Query psy9948
Match_columns 203
No_of_seqs 107 out of 196
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 23:46:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9948.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9948hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t0ga_ d.120.1.2 (A:) Putativ 30.7 7.2 0.00053 27.2 0.9 15 179-193 87-101 (109)
2 d1uzca_ a.159.2.1 (A:) Hypa/FB 26.6 14 0.001 23.2 1.8 15 186-200 34-48 (69)
3 d1n6za_ d.263.1.1 (A:) Hypothe 26.0 18 0.0013 24.7 2.4 17 179-195 50-66 (105)
4 d2doda1 a.159.2.1 (A:651-719) 22.5 20 0.0015 22.4 1.9 15 186-200 31-45 (69)
5 d1o4ua2 d.41.2.1 (A:1-103) Qui 17.1 25 0.0018 23.2 1.5 19 142-160 85-103 (103)
6 d2dofa1 a.159.2.1 (A:888-959) 16.9 24 0.0017 22.2 1.3 14 186-199 31-44 (72)
7 d1iufa2 a.4.1.7 (A:76-141) Ars 15.7 30 0.0022 21.3 1.5 13 183-195 53-65 (66)
8 d2doea1 a.159.2.1 (A:784-853) 15.4 26 0.0019 21.8 1.2 15 186-200 31-45 (70)
9 d1hlva2 a.4.1.7 (A:67-131) DNA 14.9 1.2E+02 0.0089 18.1 5.5 33 141-193 32-64 (65)
10 d1m0ua1 a.45.1.1 (A:123-249) C 12.2 58 0.0042 21.2 2.4 20 181-200 49-68 (127)
No 1
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.68 E-value=7.2 Score=27.17 Aligned_cols=15 Identities=33% Similarity=0.813 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHH
Q psy9948 179 ISSVQNWYQNFERKL 193 (203)
Q Consensus 179 ~~~~~~W~~kF~~kl 193 (203)
++.+++|.++|++|+
T Consensus 87 ~~~L~~W~~~f~~kY 101 (109)
T d1t0ga_ 87 INTLNDWETKFEAKY 101 (109)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCC
Confidence 578999999999876
No 2
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.62 E-value=14 Score=23.23 Aligned_cols=15 Identities=7% Similarity=0.321 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCccc
Q psy9948 186 YQNFERKLALNPNFW 200 (203)
Q Consensus 186 ~~kF~~kl~~dP~Fl 200 (203)
|+++.+|+..||.|+
T Consensus 34 W~~~~~~~~~DpRy~ 48 (69)
T d1uzca_ 34 WEQAMKMIINDPRYS 48 (69)
T ss_dssp HHHHHHHHHTSGGGG
T ss_pred HHHHHHHhccCcchh
Confidence 668999999999987
No 3
>d1n6za_ d.263.1.1 (A:) Hypothetical protein Yml108w {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.02 E-value=18 Score=24.68 Aligned_cols=17 Identities=12% Similarity=0.860 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHhc
Q psy9948 179 ISSVQNWYQNFERKLAL 195 (203)
Q Consensus 179 ~~~~~~W~~kF~~kl~~ 195 (203)
+..++.|++||-.++.-
T Consensus 50 ~D~lN~fFDkFDE~Iai 66 (105)
T d1n6za_ 50 LDELNTWFDKFDAEICI 66 (105)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccceec
Confidence 77899999999999853
No 4
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.49 E-value=20 Score=22.42 Aligned_cols=15 Identities=13% Similarity=0.514 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCccc
Q psy9948 186 YQNFERKLALNPNFW 200 (203)
Q Consensus 186 ~~kF~~kl~~dP~Fl 200 (203)
|+++.+|+..||.|.
T Consensus 31 W~~~~~k~~~DpRy~ 45 (69)
T d2doda1 31 WEKELHKIVFDPRYL 45 (69)
T ss_dssp HHHHHHHHHTCSGGG
T ss_pred HHHHHHHhccCcccc
Confidence 678999999999984
No 5
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=17.12 E-value=25 Score=23.21 Aligned_cols=19 Identities=5% Similarity=0.088 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhHhhhhhc
Q psy9948 142 NFVQFCQKMVTSFVNYISS 160 (203)
Q Consensus 142 ~~~~~A~ki~~nlfNyl~S 160 (203)
...-.++|++.||.-+|||
T Consensus 85 ~~iL~~ER~~LN~Lq~lS~ 103 (103)
T d1o4ua2 85 YKLLVAERTLLNVLSVMFS 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 5667899999999999986
No 6
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.87 E-value=24 Score=22.16 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCcc
Q psy9948 186 YQNFERKLALNPNF 199 (203)
Q Consensus 186 ~~kF~~kl~~dP~F 199 (203)
|+.|.++|..||-|
T Consensus 31 W~~~~~~l~~DpRy 44 (72)
T d2dofa1 31 WSDTRRTLRKDHRW 44 (72)
T ss_dssp HHHHHHHHHHSSTH
T ss_pred HHHHHHHhcCCcch
Confidence 67999999999988
No 7
>d1iufa2 a.4.1.7 (A:76-141) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=15.65 E-value=30 Score=21.26 Aligned_cols=13 Identities=23% Similarity=0.808 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhc
Q psy9948 183 QNWYQNFERKLAL 195 (203)
Q Consensus 183 ~~W~~kF~~kl~~ 195 (203)
.-|.+||++|...
T Consensus 53 ~GWL~rFK~Rh~l 65 (66)
T d1iufa2 53 NGWLEGFRKRHIL 65 (66)
T ss_dssp SHHHHHHHHHTSC
T ss_pred hHHHHHHHHHhcc
Confidence 3699999999753
No 8
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.39 E-value=26 Score=21.77 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCccc
Q psy9948 186 YQNFERKLALNPNFW 200 (203)
Q Consensus 186 ~~kF~~kl~~dP~Fl 200 (203)
|+++..++..||-|.
T Consensus 31 W~~~~~~~~~DpRy~ 45 (70)
T d2doea1 31 WSKVKDKVESDPRYK 45 (70)
T ss_dssp HHHHHHHHTTSTHHH
T ss_pred HHHHHHHhccCHHHH
Confidence 669999999999884
No 9
>d1hlva2 a.4.1.7 (A:67-131) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.91 E-value=1.2e+02 Score=18.09 Aligned_cols=33 Identities=12% Similarity=0.376 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHhHhhhhhcccCCCCCCCCCCCceeeehhHHHHHHHHHHHHH
Q psy9948 141 SNFVQFCQKMVTSFVNYISSFSTTQASMVPNPNETYVPISSVQNWYQNFERKL 193 (203)
Q Consensus 141 ~~~~~~A~ki~~nlfNyl~SF~~~~~~~~~~~~~~~VP~~~~~~W~~kF~~kl 193 (203)
....+-|+.+++.| .+..|.. =.-|.++|.+|.
T Consensus 32 ~~i~~kA~~~a~~l--~~~~F~a------------------S~GWL~rFK~Rh 64 (65)
T d1hlva2 32 IILKEKALRIAEEL--GMDDFTA------------------SNGWLDRFRRRR 64 (65)
T ss_dssp HHHHHHHHHHHHHH--TCTTCCC------------------CHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh--CCCCCCC------------------CHHHHHHHHHhc
Confidence 45666777777776 2344432 247999999985
No 10
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=12.25 E-value=58 Score=21.19 Aligned_cols=20 Identities=10% Similarity=0.214 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhcCCccc
Q psy9948 181 SVQNWYQNFERKLALNPNFW 200 (203)
Q Consensus 181 ~~~~W~~kF~~kl~~dP~Fl 200 (203)
.+-+|...|++.|+.+..|+
T Consensus 49 ~l~~~l~~le~~L~~~~~fl 68 (127)
T d1m0ua1 49 VIPFYLEKLEQTVKDNDGHL 68 (127)
T ss_dssp HHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHhcCCCcc
Confidence 55689999999998776665
Done!