RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9948
         (203 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 39/231 (16%), Positives = 65/231 (28%), Gaps = 85/231 (36%)

Query: 2    FAILVSGRLVQTNYELVAEN----RFLFTIPEADTI--NHIAVFMTGTTPFPEGTGGMVY 55
            F+IL          ++V  N       F   +   I  N+ A  M   T           
Sbjct: 1659 FSIL----------DIVINNPVNLTIHFGGEKGKRIRENYSA--MIFETI---------- 1696

Query: 56   FNWPEPDSPSNWKLLGVIANEKPSS-IFKISN--LKSTENT---LVNGCTSVALY----N 105
                  D     + +    NE  +S  F+     L +T+ T   L       A +    +
Sbjct: 1697 -----VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT--LMEKAAFEDLKS 1749

Query: 106  PFGQQPISRNAQIG---------------ISVEP-IEVVN------QHLASKSNESLSNF 143
                   +  A  G               +S+E  +EVV       Q    +     SN+
Sbjct: 1750 KGLIPADATFA--GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807

Query: 144  -----------VQFCQKMVTSFVNYISSFSTTQASMVPN---PNETYVPIS 180
                         F Q+ +   V  +   +     +V N    N+ YV  +
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-NYNVENQQYV-AA 1856



 Score = 31.9 bits (72), Expect = 0.15
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 27/93 (29%)

Query: 119 GIS---VEP-IEVVNQHLASKSNESLS------NFVQFCQKMVTSFVNYISSFSTT--QA 166
            ++   V+  +   N HL +     +S      N V      V+     +   + T  +A
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV------VSGPPQSLYGLNLTLRKA 396

Query: 167 SMVPNPNETYVPISSVQNWYQNFERKLALNPNF 199
                 +++ +P S         ERKL  +  F
Sbjct: 397 KAPSGLDQSRIPFS---------ERKLKFSNRF 420


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.9 bits (79), Expect = 0.007
 Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 16/44 (36%)

Query: 76  EKPSSIFKISNLKSTENTLVNGCTSVALYNPFGQQP-ISRNAQI 118
           EK +       LK  + +L        LY      P ++  A +
Sbjct: 18  EKQA-------LKKLQASL-------KLYAD-DSAPALAIKATM 46


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.0 bits (82), Expect = 0.008
 Identities = 30/228 (13%), Positives = 66/228 (28%), Gaps = 84/228 (36%)

Query: 28  PEADTIN--HIAVFMTGTTPFPEGTGGMVYFNWPEPDSPSNWKLLGVIANEKPSSIFKIS 85
            E  T N   +++               +        +  NWK +     +K ++I + S
Sbjct: 320 REVLTTNPRRLSII-----------AESIR---DGLATWDNWKHVN---CDKLTTIIESS 362

Query: 86  --NLKSTENTLVNGCTSVALYNPFGQQPISRNAQIGISV-----------EPIEVVNQHL 132
              L+  E           +++     P   +A I   +           + + VVN+ L
Sbjct: 363 LNVLEPAEYR--------KMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNK-L 411

Query: 133 ASKS--------------------NESLSNFVQFCQKMVTSFVNYISSFSTTQASMVPNP 172
              S                       L N     + +V  + N   +F +    ++P  
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSD--DLIPPY 468

Query: 173 NETYV---------------PISSVQNWYQNF---ERKLALNPNFWQS 202
            + Y                 ++  +  + +F   E+K+  +   W +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516


>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate
           pathway, isopentenyl phsophate kinase, beta-alpha
           sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A
           {Thermoplasma acidophilum} PDB: 3lkk_A*
          Length = 249

 Score = 27.2 bits (61), Expect = 3.3
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 26  TIPEADTINHIAVFMTGTTPFPEGTGGMV 54
             P+A  +  I   +T      + TGG+ 
Sbjct: 179 RNPDAVLLRDIDTNITFDRVQNDVTGGIG 207


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0759    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,896,389
Number of extensions: 151262
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 10
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)