RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9948
         (203 letters)



>d1iwga6 d.225.1.1 (A:725-812) Multidrug efflux transporter AcrB
           TolC docking domain; DN and DC subdomains {Escherichia
           coli [TaxId: 562]}
          Length = 88

 Score = 26.1 bits (57), Expect = 1.1
 Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 1/68 (1%)

Query: 116 AQIGISVEPI-EVVNQHLASKSNESLSNFVQFCQKMVTSFVNYISSFSTTQASMVPNPNE 174
             +G+S+  I   +             +  +  +  V S   Y           V   + 
Sbjct: 13  QALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADG 72

Query: 175 TYVPISSV 182
             VP S+ 
Sbjct: 73  QMVPFSAF 80


>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 62

 Score = 24.3 bits (53), Expect = 3.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 173 NETYVPISSVQNWYQNFERKL 193
            +T + +  V NW+ N  R++
Sbjct: 40  AQTNLTLLQVNNWFINARRRI 60


>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 729

 Score = 25.9 bits (57), Expect = 4.6
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 2   FAIL--VSGRLVQTNYELVAENRFLFTIPEADTINHIA 37
             IL  + GR +Q ++E V E R    I   + + H  
Sbjct: 384 LGILVDIYGRKMQADFEGVLERRIHDFINYGEGLWHTG 421


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 717,536
Number of extensions: 30355
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 5
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)