RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9949
(383 letters)
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 336 bits (864), Expect = e-114
Identities = 134/355 (37%), Positives = 190/355 (53%), Gaps = 6/355 (1%)
Query: 29 AWQISSYGGADELQFNDNVKTPILK-SKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQ 87
AW I YG + L+F N+ PI+ +V+V++ A SVNPIDV M GYG LN R
Sbjct: 24 AWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRD 83
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLILADS 147
++ EFPLTLGRD G ++ G V D V+ + P KQG+ S+ ++
Sbjct: 84 PLHVKIKGE-EFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSG 142
Query: 148 ALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQ 207
V KP +++ +AA + Y LTAWSA+ L KRVL+LGASGGVGT A+Q
Sbjct: 143 NEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQ 202
Query: 208 LLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHSIAGAGPYDVILDAAGIPLDQ 267
++KAWD V CS DA +LV L + VIDY + P+D ILD G
Sbjct: 203 VMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGG--ST 260
Query: 268 INSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNAFDLLKSNFESGELCKTNTIR 327
FLK + +VTL +PFL N D LG+ G+++ + + K R
Sbjct: 261 ETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKH--FWKGVHYR 318
Query: 328 WGFFMPIPYAVKEINKFIERGQIKPVIDSKYNFCELPTAFEKVQQGHLRGKIILN 382
W FFM + +I + ++ G+I+PVI+ + F ++P AF KV++GH RGK ++N
Sbjct: 319 WAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVIN 373
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 229 bits (586), Expect = 5e-73
Identities = 81/355 (22%), Positives = 139/355 (39%), Gaps = 45/355 (12%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQL 88
A Q +G L+ D TP + +L+++ A S+NPID G G V
Sbjct: 9 AIQFDQFGPPKVLKLVD-TPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAK------ 61
Query: 89 ETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQ-PHKQGSFSKLILADS 147
+ P LG DF G+++ G V ++NI D V G+ P +++ + A
Sbjct: 62 -----KLKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASP 116
Query: 148 ALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQ 207
+ +K +S +AA + GLTA AL A + + VL+ +GGVG +A+Q
Sbjct: 117 DTIIQKLEKLSFLQAASLPTAGLTALQALN-QAEVK----QGDVVLIHAGAGGVGHLAIQ 171
Query: 208 LLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHSIAGAGPYDVILDAAGIPLDQ 267
L K V+TT S + +L I+Y+E + + +I + P D ++D G D
Sbjct: 172 LAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAI--STPVDAVIDLVG--GDV 227
Query: 268 INSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNAFDLLKSNFESGELCKTNTIR 327
+ LK V++ + +
Sbjct: 228 GIQSIDCLKET--GCIVSVPTITAGRVIEVAKQKHR---------------------RAF 264
Query: 328 WGFFMPIPYAVKEINKFIERGQIKPVIDSKYNFCELPTAFEKVQQGHLRGKIILN 382
+ + K + +++ I + E TA E ++ GH+RGK++
Sbjct: 265 GLLKQFNIEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFK 319
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 208 bits (533), Expect = 3e-65
Identities = 64/355 (18%), Positives = 118/355 (33%), Gaps = 45/355 (12%)
Query: 29 AWQISSYGG-ADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQ 87
Q+ +Y + N V P L + D+LV+ +A+ +NP+D +
Sbjct: 4 QHQVWAYQTKTHSVTLNS-VDIPALAADDILVQNQAIGINPVDWKFIKANP--------- 53
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLILADS 147
G D G IV G +V + V + GSF++ + ++
Sbjct: 54 -------INWSNGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFAEFTVLNT 106
Query: 148 ALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQ 207
V P N+S E AA + LTAW A + + L + + VL++G G V + Q
Sbjct: 107 DRVMTLPDNLSFERAAALPCPLLTAWQAFEK---IPL--TKQREVLIVGF-GAVNNLLTQ 160
Query: 208 LLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHSIAGAGPYDVILDAAGIPLDQ 267
+L V + ++ L + Y I DA
Sbjct: 161 MLNNAGYVVDLVSASLSQALAAKRGVRHLYREPSQV-------TQKYFAIFDAVNS--QN 211
Query: 268 INSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNAFDLLKSNFESGELCKTNTIR 327
+ +P LK + ++ + P + +
Sbjct: 212 AAALVPSLKAN--GHIICIQDR-----IPAPIDPAFTRTIS--YHEIALGALHDFGDRQD 262
Query: 328 WGFFMPIPYAVKEINKFIERGQIKPVIDSKYNFCELPTAFEKVQQGHLRGKIILN 382
W M + + I +G+++ + F ++ A + +Q L+ + LN
Sbjct: 263 WQILMQQ---GEALLTLIAQGKMEIAAPDIFRFEQMIEALDHSEQTKLKTVLTLN 314
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 209 bits (533), Expect = 8e-65
Identities = 71/370 (19%), Positives = 144/370 (38%), Gaps = 54/370 (14%)
Query: 29 AWQISSYGGADE---LQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSL 85
A + + + + P K ++LV+++++SVNP+D
Sbjct: 5 AIGFEQPFKLSDGNLFKTFN-LDIPEPKVHEILVKIQSISVNPVDTKQRLMD-------- 55
Query: 86 RQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLILA 145
V + P LG D G + + G VT N D+VY P + GS ++ L
Sbjct: 56 ----------VSKAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLI 105
Query: 146 DSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRD--KRVLVLGASGGVGT 203
+ LV K P NIS E+A + TG+TA+ L + + K +L++ +GGVG+
Sbjct: 106 NERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGS 165
Query: 204 MAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP--EAMHSIAGAGPYDVILDA 260
+A Q+ KA+ + V+TT S + + + ++V+++ E + D +
Sbjct: 166 IATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIEL-VDYVFCT 224
Query: 261 AGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNA-----FDLLKSNF 315
+ + +K T+ + + L K+ F +
Sbjct: 225 FNTD-MYYDDMIQLVK--PRGHIATIVAF----ENDQDLNALKPKSLSFSHEFMFARPLN 277
Query: 316 ESGELCKTNTIRWGFFMPIPYAVKEINKFIERGQIKPVID---SKYNFCELPTAFEKVQQ 372
++ ++ K + +++I +E+ +P + A + ++
Sbjct: 278 QTDDMIKHHEY-----------LEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILES 326
Query: 373 GHLRGKIILN 382
+ GK+++N
Sbjct: 327 NTMIGKLVIN 336
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 198 bits (506), Expect = 1e-60
Identities = 76/368 (20%), Positives = 143/368 (38%), Gaps = 51/368 (13%)
Query: 29 AWQISSYGGADE-LQFND-NVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLR 86
A + + D + P D+LVE+KAVSVNP+D +
Sbjct: 25 AVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTP-------- 76
Query: 87 QLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLILAD 146
P +G D G + A GP VT D V+ + G+ ++ L D
Sbjct: 77 --------PDGTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVD 128
Query: 147 SALVHKKPSNISDEEAAGVLYTGLTAWSALQITAAL-GLVYPRDKRVLVLGASGGVGTMA 205
+V +KP + EAA + T +TAW A + V +L++G +GGVG++A
Sbjct: 129 ERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIA 188
Query: 206 VQLLKAW-DIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP--EAMHSIAGAGPYDVILDAA 261
VQ+ + D+ V+ T S + V SL + VID+++P + ++ P V
Sbjct: 189 VQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH 248
Query: 262 GIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNA-----FDLLKSNFE 316
+ +F + P + ++ K + F
Sbjct: 249 TD--KHAAEIADLIA--PQGRFCLIDDP-----SAFDIMLFKRKAVSIHHELMFTRPMFG 299
Query: 317 SGELCKTNTIRWGFFMPIPYAVKEINKFIERGQIKPVIDSKY---NFCELPTAFEKVQQG 373
+ ++ + + + ++++ ++ G+++ + ++ N L A V+ G
Sbjct: 300 TPDMSEQGRL-----------LNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESG 348
Query: 374 HLRGKIIL 381
RGK+++
Sbjct: 349 TARGKVVI 356
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 192 bits (489), Expect = 3e-58
Identities = 81/362 (22%), Positives = 139/362 (38%), Gaps = 47/362 (12%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQL 88
A + G L+ + P VLV+++A NP+D + G
Sbjct: 10 AAVVEEANGPFVLR---KLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPH-------- 58
Query: 89 ETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVI--QPHKQGSFSKLILAD 146
P LG D G +VA GP V + D V+G+ QG+ ++ D
Sbjct: 59 ------AQQPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVD 112
Query: 147 SALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAV 206
+ L+ KP+ ++ +A+ + +TAW L A + + VL+ G GGVG +A+
Sbjct: 113 ARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQ----DGQTVLIQGGGGGVGHVAI 168
Query: 207 QLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPE--AMHSIAGAGPYDVILDAAGIP 264
Q+ A V T G + V L + EPE A AG G +D++ D G
Sbjct: 169 QIALARGARVFATARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQG-FDLVYDTLG-- 225
Query: 265 LDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNAFDLLKSNFESGELCKTN 324
+++ +K V+ + L P K A SG
Sbjct: 226 GPVLDASFSAVKRF--GHVVSCLGW-----GTHKLAPLSFKQA-------TYSGVFTLHT 271
Query: 325 TIRWGFFMPIPYAVKEINKFIERGQIKPVIDSK-YNFCELPTAFEKV----QQGHLRGKI 379
+ ++E + ++ G++ P +D + ++ E+ +A++ V RGKI
Sbjct: 272 LLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKI 331
Query: 380 IL 381
+
Sbjct: 332 AI 333
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 191 bits (486), Expect = 1e-57
Identities = 80/381 (20%), Positives = 127/381 (33%), Gaps = 69/381 (18%)
Query: 28 AAWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQ 87
A ++ + P+L V V ++AV++NP D +M G +
Sbjct: 13 TALTVNDHDEVTVWN---AAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFA--------- 60
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQP-----HKQGSFSKL 142
LG D+ G +VA G VT + + D VYG QG+FS+
Sbjct: 61 ----------TPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQY 110
Query: 143 ILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYP-----------RDKR 191
+ + K P +S E+AA + TA A++ LGL P +
Sbjct: 111 TVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMK---LLGLPLPSPSADQPPTHSKPVY 167
Query: 192 VLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHSI--A 249
VLV G S T+ +Q+L+ + TCS DL S V DY P +I
Sbjct: 168 VLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTY 227
Query: 250 GAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNAFD 309
LD + + G +V+L +V +
Sbjct: 228 TKNNLRYALDCITNVESTTFCFAAIGRAG--GHYVSLNPF-----PEHAATRKMVTTDWT 280
Query: 310 LLKSNFESGELCKTNTIRWGFFMPIPYA----------VKEINKFIERGQIKPVIDSKY- 358
L + F G W P + + + +E G++
Sbjct: 281 LGPTIFGEG-------STWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQ 333
Query: 359 -NFCELPTAFEKVQQGHLRGK 378
F + E V++G L G+
Sbjct: 334 GGFDHIKQGMELVRKGELSGE 354
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 168 bits (427), Expect = 4e-49
Identities = 79/383 (20%), Positives = 138/383 (36%), Gaps = 75/383 (19%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAML-GGYGNVVLNSLRQ 87
A + + GG + L+ D + P K+V V +KA ++N +DV + G
Sbjct: 3 AVVMRARGGPEVLEVAD-LPVPEPGPKEVRVRLKAAALNHLDVWVRKGVAS--------- 52
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV-------------------- 127
P L P LG D G + A GP V D V
Sbjct: 53 -------PKLPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDN 105
Query: 128 ----YGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALG 183
Y ++ H+ G++++ ++ A + KP N+S EEAA + T LTAW + +
Sbjct: 106 LCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVR 165
Query: 184 LVYPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP 242
VLV+ A GV A+Q+ K + V+ T + K +L + ++Y P
Sbjct: 166 ----PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHP 221
Query: 243 ---EAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKT-GKFSKFVTLRSPFLKNTDSLG 298
+ + + G D ++D G + G+ + +L
Sbjct: 222 DWPKEVRRLTGGKGADKVVDHTG--ALYFEGVIKATANGGRIAIAGASSGY----EGTLP 275
Query: 299 LVPGLVKNAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIERGQIKPVIDSKY 358
+ +I G M + I +F+E G++KPV+
Sbjct: 276 FAHVFYRQL-----------------SIL-GSTMASKSRLFPILRFVEEGKLKPVVGQVL 317
Query: 359 NFCELPTAFEKVQQGHLRGKIIL 381
+++ + GK++L
Sbjct: 318 PLEAAAEGHRLLEERRVFGKVVL 340
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 165 bits (420), Expect = 3e-47
Identities = 79/398 (19%), Positives = 128/398 (32%), Gaps = 75/398 (18%)
Query: 32 ISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQLETC 91
++ L+ + V P L +VLV + A S+N V + L+Q
Sbjct: 41 VADKDVRKSLRLGE-VPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQ 99
Query: 92 SVEPV--LEFPLTLGRDFCGKIVAKGPRVTDLNI-DDVVY-------------------- 128
+ LG D G +V G V D V+
Sbjct: 100 GGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGT 159
Query: 129 ---GVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLV 185
G ++ + ++ + KP++++ EEAA TA+ L ++ +
Sbjct: 160 EQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRML-VSDRGAQM 218
Query: 186 YPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNE--- 241
D VL+ GASGG+G+ A+Q +K V S K V +L +LVI+ E
Sbjct: 219 KQGD-IVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGI 277
Query: 242 ------------------PEAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKF 283
+ + AG P D++ + G + + G
Sbjct: 278 TDDIADDPRRVVETGRKLAKLVVEKAGREP-DIVFEHTG--RVTFGLSVIVARRG--GTV 332
Query: 284 VTLRSPFLKNTDSLGLVPGLVKNAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINK 343
VT G G + FD K I G + N+
Sbjct: 333 VT-----------CGSSSG-YLHTFDNRYLWM------KLKKIV-GSHGANHEEQQATNR 373
Query: 344 FIERGQIKPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
E G + P + + Y E A VQ GK+ +
Sbjct: 374 LFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAV 411
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 163 bits (414), Expect = 4e-47
Identities = 73/407 (17%), Positives = 128/407 (31%), Gaps = 94/407 (23%)
Query: 9 SKVPVQLNKINHLKYSTRTAAWQISSYGGADE-LQFNDNVKTPILKSKDVLVEMKAVSVN 67
S V + + R A +G + ++ + ++ ++ DV V+M A +N
Sbjct: 9 SGVDLGTENLYFQSMPARVRALVYGHHGDPAKVVELKN-LELAAVRGSDVRVKMLAAPIN 67
Query: 68 PIDVAML-GGYGNVVLNSLRQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDV 126
P D+ M+ G YG + P E P G + ++VA G VT L D
Sbjct: 68 PSDINMIQGNYG--------------LLP--ELPAVGGNEGVAQVVAVGSNVTGLKPGDW 111
Query: 127 VYGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVY 186
V G++ + + + PS+I + AA + TA+ L L
Sbjct: 112 VIPANAGL--GTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQL---- 165
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK-----DLVTSLNPNLVIDYNE 241
V+ ++ GVG +Q+ A + + D + SL VI E
Sbjct: 166 QPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEE 225
Query: 242 ---PEAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLG 298
PE + + L+ G GK + L
Sbjct: 226 LRRPEMKNFFKDMPQPRLALNCVG---------------GKS---------STELLRQLA 261
Query: 299 -----LVPGLVKNAFDLLKSNFESGE---------LCKTNTIRWGFFMPIPY-------- 336
+ G + + + K +R GF++
Sbjct: 262 RGGTMVTYG------------GMAKQPVVASVSLLIFKDLKLR-GFWLSQWKKDHSPDQF 308
Query: 337 --AVKEINKFIERGQIKPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
+ + I RGQ+ S+ + +A E + + K IL
Sbjct: 309 KELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSKQIL 355
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 162 bits (413), Expect = 5e-47
Identities = 78/370 (21%), Positives = 135/370 (36%), Gaps = 69/370 (18%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAM-LGGYGNVVLNSLRQ 87
A ++ +GG + L+ ++ PI K VL+++ A VNP++ + G Y
Sbjct: 32 AVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYS--------- 82
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLILADS 147
P T G D G I A G + D V+ G +++ LA
Sbjct: 83 -------RKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTIS--GGYAEYALAAD 133
Query: 148 ALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQ 207
V+K P + ++ A + TA+ AL +A + + VLV GASGGVG A Q
Sbjct: 134 HTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVK----AGESVLVHGASGGVGLAACQ 189
Query: 208 LLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP---EAMHSIAGAGPYDVILDAAGI 263
+ +A+ ++++ T + +V + V ++ E + + G D+I++
Sbjct: 190 IARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA- 248
Query: 264 PLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSL---------GLVPGLVKNAFDLLKSN 314
N L K+ L G + N D +
Sbjct: 249 -----NVNLS------------------KDLSLLSHGGRVIVVGSRGTIEINPRDTMAKE 285
Query: 315 FESGELCKTNTIRWGFFMPIPYA--VKEINKFIERGQIKPVIDSKYNFCELPTAFEKV-Q 371
+ + + +E G +KPVI S+Y ++ A E +
Sbjct: 286 ------SSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIH 339
Query: 372 QGHLRGKIIL 381
GK+IL
Sbjct: 340 GSGATGKMIL 349
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 161 bits (410), Expect = 2e-46
Identities = 91/400 (22%), Positives = 140/400 (35%), Gaps = 80/400 (20%)
Query: 13 VQLNKINHLKYSTRTA---AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPI 69
V L N S + W + +L+ + P D++V AVS+N
Sbjct: 11 VDLGTENLYFQSMMSKWMQEWSTET-VAPHDLKLAE-RPVPEAGEHDIIVRTLAVSLNYR 68
Query: 70 DVAML-GGYGNVVLNSLRQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV- 127
D +L G G L FP D G + A G VT D V
Sbjct: 69 DKLVLETGMG----------------LDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVI 112
Query: 128 --------------------YGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLY 167
Y + G S+ ++ P ++ EA+ +
Sbjct: 113 STFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPC 172
Query: 168 TGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK-D 226
GLTAW AL L RV+V G GGV +Q+ KA EV+ T S K D
Sbjct: 173 AGLTAWFALVEKGHLR----AGDRVVVQGT-GGVALFGLQIAKATGAEVIVTSSSREKLD 227
Query: 227 LVTSLNPNLVIDYNEP----EAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKT-GKFS 281
+L + I+ E G D IL+ AG + L + G+ S
Sbjct: 228 RAFALGADHGINRLEEDWVERVYALTGDRGA-DHILEIAGG--AGLGQSLKAVAPDGRIS 284
Query: 282 KFVTLRSPFLKNTDSLGLVPGLVKNAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEI 341
L S + P L+K+ ++ G + A++++
Sbjct: 285 VIGVLEGF----EVSGPVGPLLLKSP-----------------VVQ-GISVGHRRALEDL 322
Query: 342 NKFIERGQIKPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
++R +KPVID +Y F E+P A + +G GK+++
Sbjct: 323 VGAVDRLGLKPVIDMRYKFTEVPEALAHLDRGPF-GKVVI 361
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 159 bits (404), Expect = 7e-45
Identities = 73/401 (18%), Positives = 124/401 (30%), Gaps = 74/401 (18%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDV-AMLGGYGNVVLNSLRQ 87
A + + D+V P L + LV + A SVN V + + R
Sbjct: 45 AGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY 104
Query: 88 LETCSVEPVLEFPL-TLGRDFCGKIVAKGPRVTDLNI-DDVV------------------ 127
+ + P +G D G ++ GP V D+VV
Sbjct: 105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTM 164
Query: 128 -----YGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAAL 182
G +++ L S + KP ++S EEAA TA+ L ++
Sbjct: 165 LDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQL-VSRNG 223
Query: 183 GLVYPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNE 241
+ D VL+ GASGG+G+ A Q A + S K ++ ++ +ID N
Sbjct: 224 AGMKQGD-NVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNA 282
Query: 242 P---------------------EAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKF 280
G D++ + G + + + + G
Sbjct: 283 EGYRFWKDENTQDPKEWKRFGKRIRELTGGEDI-DIVFEHPGR--ETFGASVFVTRKG-- 337
Query: 281 SKFVTLRSPFLKNTDSLGLVPGLVKNAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKE 340
T G + +D I G E
Sbjct: 338 GTITT-----------CASTSGYMH-EYDNRYLWM------SLKRII-GSHFANYREAWE 378
Query: 341 INKFIERGQIKPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
N+ I +G+I P + Y+ + A V + +GK+ +
Sbjct: 379 ANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGV 419
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 155 bits (395), Expect = 2e-44
Identities = 69/383 (18%), Positives = 122/383 (31%), Gaps = 80/383 (20%)
Query: 24 STRTAAWQISSYGGADE-LQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGG-YGNVV 81
S Q +G + LQ LK +V V M +NP D+ + G Y
Sbjct: 2 SLHGKLIQFHKFGNPKDVLQVEY-KNIEPLKDNEVFVRMLVRPINPSDLIPITGAYA--- 57
Query: 82 LNSLRQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSK 141
+ P G + G + G V+ I V + G++ +
Sbjct: 58 -------------HRIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLPLRGE---GTWQE 101
Query: 142 LILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGV 201
+ + V P +I D AA + LTAW T L R+ +LV +
Sbjct: 102 YVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNL----QRNDVLLVNACGSAI 157
Query: 202 GTMAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNE---PEAMHSI-AGAGPYDV 256
G + QL + + ++ + + + L VID + E + + G G D
Sbjct: 158 GHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGA-DA 216
Query: 257 ILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSL---------GLVPGLVKNA 307
+D+ G G + SL GL+ G+ N
Sbjct: 217 AIDSIG---------------GPD---------GNELAFSLRPNGHFLTIGLLSGIQVNW 252
Query: 308 FDLLKSNFESGELCKTNTIRWGFFMPIPY-------AVKEINKFIERGQIKPV-IDSKYN 359
+++ I + + + +E Q++ + + S Y
Sbjct: 253 AEIVTKA------KVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMKVHSTYE 306
Query: 360 FCELPTAFEKVQQG-HLRGKIIL 381
++ A + VQ +GK+ L
Sbjct: 307 LADVKAAVDVVQSAEKTKGKVFL 329
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 150 bits (381), Expect = 2e-42
Identities = 77/376 (20%), Positives = 137/376 (36%), Gaps = 82/376 (21%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAML-GGYGNVVLNSLRQ 87
A Q S G + L + D V+TP V+V++KA V D M G Y
Sbjct: 24 AIQAQSLSGPEGLVYTD-VETPGAGPNVVVVDVKAAGVCFPDYLMTKGEY---------- 72
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLILADS 147
+ +E P G + G + + + + D V G +++ +
Sbjct: 73 ------QLKMEPPFVPGIETAGVVRSAPE-GSGIKPGDRVMAFNF---IGGYAERVAVAP 122
Query: 148 ALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQ 207
+ + P + D EA ++ T + A L + VLVLGA+GG+GT A+Q
Sbjct: 123 SNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLR----AGETVLVLGAAGGIGTAAIQ 178
Query: 208 LLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNE--PEAMHSIAGAGPYDVILDAAGIP 264
+ K +V+ + A + V S+ ++V+ E +A+ G D+++D G
Sbjct: 179 IAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIG-- 236
Query: 265 LDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNAFD--LLKSNFESGE--- 319
G F +L A + LL F +G
Sbjct: 237 -------------GPA---------FDDAVRTL---------ASEGRLLVVGFAAGGIPT 265
Query: 320 ------LCKTNTI---RWGFFMP-----IPYAVKEINKFIERGQIKPVIDSKYNFCELPT 365
L + ++ WG F+ + + K + G ++P + ++ E
Sbjct: 266 IKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQ 324
Query: 366 AFEKVQQGHLRGKIIL 381
A + G + GK++L
Sbjct: 325 ALQDFADGKVYGKMVL 340
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 150 bits (380), Expect = 3e-42
Identities = 72/371 (19%), Positives = 130/371 (35%), Gaps = 54/371 (14%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAM-LGGYGNVVLNSLRQ 87
A ++ +GG ++L+ P + ++ + +KA +N ID+ + G
Sbjct: 6 AVVLAGFGGLNKLRLFR-KAMPEPQDGELKIRVKACGLNFIDLMVRQGNID--------- 55
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLILADS 147
+ PL G + G + A G V I D V + ++++++
Sbjct: 56 -------NPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVN---YNAWAEVVCTPV 105
Query: 148 ALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQ 207
V+K P ++S EAA +TA+ L A L VLV A GGVG Q
Sbjct: 106 EFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLR----EGMSVLVHSAGGGVGQAVAQ 161
Query: 208 LLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNE--PEAMHSIAGAGPYDVILDAAGIPL 265
L V + K + + D N + + I+ G D++LD
Sbjct: 162 LCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNADYVQEVKRISAEG-VDIVLDCLC--- 217
Query: 266 DQINSYLP-----------FLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNAFDLLKSN 314
++ G + F S V + N L + N
Sbjct: 218 ---GDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKV--NPIKLYEEN 272
Query: 315 FESGELCKTNTIRWGFFMPIPYAVKEINK----FIERGQIKPVIDSKYNFCELPTAFEKV 370
+ + + F ++ + + + +IKPV+DS + E+ A +++
Sbjct: 273 ---KVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRI 329
Query: 371 QQGHLRGKIIL 381
GK+IL
Sbjct: 330 HDRGNIGKLIL 340
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 148 bits (376), Expect = 1e-41
Identities = 85/377 (22%), Positives = 138/377 (36%), Gaps = 80/377 (21%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAM-LGGYGNVVLNSLRQ 87
+ S+GG D + P+ +VLV +A+ VN D+A G Y
Sbjct: 31 FVDLKSFGGPDVMVIGK-RPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYP--------- 80
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLILADS 147
P + LG + G+IV GP V+ + D V G+ G++++ L +
Sbjct: 81 -------PPKDASPILGLELSGEIVGVGPGVSGYAVGDKVCGLAN---GGAYAEYCLLPA 130
Query: 148 ALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQ 207
+ P +AA + T T W+ L A L + VL+ G + G+GT A+Q
Sbjct: 131 GQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLT----EGESVLIHGGTSGIGTTAIQ 186
Query: 208 LLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP---EAMHSIAGAGPYDVILDAAGI 263
L +A+ EV T K + L I+Y + + G G D+ILD G
Sbjct: 187 LARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGV-DIILDMIG- 244
Query: 264 PLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSL---------GLVPGLVKNAFDLLKSN 314
+Y +N SL + G V +L
Sbjct: 245 -----AAYFE------------------RNIASLAKDGCLSIIAFLGGAVAEKVNLSPI- 280
Query: 315 FESGELCKTNTIRWGFFM---PIPY-------AVKEINKFIERGQIKPVIDSKYNFCELP 364
+ K T+ G M + E+ +E G + PVI + F ++
Sbjct: 281 -----MVKRLTVT-GSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVA 334
Query: 365 TAFEKVQQGHLRGKIIL 381
A +++G GK++L
Sbjct: 335 DAHRLLEEGSHVGKVML 351
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 146 bits (370), Expect = 9e-41
Identities = 55/391 (14%), Positives = 109/391 (27%), Gaps = 94/391 (24%)
Query: 29 AWQISSYGGADELQFND-----------NVKTPILKSKDVLVEMKAVSVNPIDVAML-GG 76
A + G + + P VL+++ S+NP DVA + G
Sbjct: 13 ALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQ 72
Query: 77 YGNVVLNSLRQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRV-TDLNIDDVVYGVIQPHK 135
YG G + G IVA G + V
Sbjct: 73 YG----------------QPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSN 116
Query: 136 QGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVL 195
GS+++ +A++A + DE+ A ++ LTA + +K ++
Sbjct: 117 WGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFD-IVKQ----EGEKAFVMT 171
Query: 196 GASGGVGTMAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP---EAMHSIAGA 251
+ + + + L K + T D + L+ + V++ P + + A
Sbjct: 172 AGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKA 231
Query: 252 GPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLG----LV------- 300
+ LDA G +++ +
Sbjct: 232 EQPRIFLDAVT---------------GPL---------ASAIFNAMPKRARWIIYGRLDP 267
Query: 301 -PGLVKNAFDLLKSNFESGELCKTNTIRWGFFMP---------IPYAVKEINKFIERGQI 350
+++ L+ + I GF++ A+ E K G+
Sbjct: 268 DATVIREPGQLIF---------QHKHIE-GFWLSEWMRQFKERRGPAILEAQKRFSDGRW 317
Query: 351 KPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
+ + E GK+ +
Sbjct: 318 STDVTAVVPLAEAIAWVPAELTKPN-GKVFI 347
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 132 bits (335), Expect = 6e-36
Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 33/241 (13%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGG-YGNVVLNSLRQ 87
Q S+ GG + L++ D + + V+V KA+ +N ID G Y
Sbjct: 4 RIQFSTVGGPEVLEYVD-FEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLY---------- 52
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNI-DDVVYGVIQPHKQGSFSKLILAD 146
P P LG + G + A G VT + D V YG G++S++ +
Sbjct: 53 -------PAPFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPL---GAYSEVHVLP 102
Query: 147 SALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAV 206
A + K ++S E+AA ++ GLT L+ T + + +L A+GGVG++A
Sbjct: 103 EANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVK----PGEIILFHAAAGGVGSLAC 158
Query: 207 QLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP----EAMHSIAGAGPYDVILDAA 261
Q KA +++ T S K +L IDY+ + G V+ D
Sbjct: 159 QWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKC-PVVYDGV 217
Query: 262 G 262
G
Sbjct: 218 G 218
Score = 29.1 bits (66), Expect = 2.4
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 337 AVKEINKFIERGQIKPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
E+ + G++K +Y + A ++ G IL
Sbjct: 279 MADELFDMLASGKLKVDGIEQYALKDAAKAQIELSARRTTGSTIL 323
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 132 bits (335), Expect = 1e-35
Identities = 75/387 (19%), Positives = 134/387 (34%), Gaps = 88/387 (22%)
Query: 29 AWQISSYG--GADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVA-MLGGYGNVVLNSL 85
++ + + + + P+ D+LV + V VN D+ G Y
Sbjct: 26 KLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRY-------- 77
Query: 86 RQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVT-DLNIDDVVYGVIQPHKQGSFSKLIL 144
+P ++ P +G + G++VA G + + V + GSF++ +
Sbjct: 78 --------DPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYM----APGSFAEYTV 125
Query: 145 ADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAAL--GLVYPRDKRVLVLGASGGVG 202
+++ PS E +L +G TA+ +L+ L G K+VLV A+GG G
Sbjct: 126 VPASIATPVPS--VKPEYLTLLVSGTTAYISLKELGGLSEG------KKVLVTAAAGGTG 177
Query: 203 TMAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP---EAMHSIAGAGPYDVIL 258
A+QL K V+ TCS D K + SL + I+Y + G DV+
Sbjct: 178 QFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGV-DVVY 236
Query: 259 DAAGIPLDQINSYLPFLKT-----------GKFSKFVTLRSPFLKNTDSLGLVPGLVKNA 307
++ G + + L T G + L L K+A
Sbjct: 237 ESVG--GAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKL-----LKKSA 289
Query: 308 FDLLKSNFESGELCKTNTIRWGFFMP-----IPYAVKEINKFIERGQIKPVIDSKYNFC- 361
+++ GFF+ A+ + + G + +D
Sbjct: 290 -----------------SVQ-GFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPE 331
Query: 362 -------ELPTAFEKVQQGHLRGKIIL 381
+ A + G GKI++
Sbjct: 332 GRFTGLESIFRAVNYMYMGKNTGKIVV 358
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 130 bits (329), Expect = 4e-35
Identities = 60/241 (24%), Positives = 92/241 (38%), Gaps = 33/241 (13%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGG-YGNVVLNSLRQ 87
+ +GG + LQ + ++ VE KA+ +N ID + G Y
Sbjct: 4 RIEFHKHGGPEVLQAVE-FTPADPAENEIQVENKAIGINFIDTYIRSGLY---------- 52
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDD-VVYGVIQPHKQGSFSKLILAD 146
P P LG + G + G V + D VVY G++S +
Sbjct: 53 -------PPPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSAL---GAYSSVHNII 102
Query: 147 SALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAV 206
+ P+ IS E+AA GLT + L+ T + D++ L A+GGVG +A
Sbjct: 103 ADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIK----PDEQFLFHAAAGGVGLIAC 158
Query: 207 QLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNE---PEAMHSI-AGAGPYDVILDAA 261
Q KA +++ T K VI+Y E E + I G V+ D+
Sbjct: 159 QWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKV-RVVYDSV 217
Query: 262 G 262
G
Sbjct: 218 G 218
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 129 bits (327), Expect = 5e-35
Identities = 75/372 (20%), Positives = 126/372 (33%), Gaps = 93/372 (25%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAML-GGYGNVVLNSLRQ 87
AW + GG EL ++ P + +V++ ++AV +N D M G Y
Sbjct: 3 AWVLKRLGGPLELV---DLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAY---------- 49
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLILADS 147
L P G + G + G R L QG ++ +
Sbjct: 50 ------LTRLHPPFIPGMEVVGVVE--GRRYAALV------------PQGGLAERVAVPK 89
Query: 148 ALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQ 207
+ P +S EEAA + LTA+ AL+ A ++VLV A+G +GT AVQ
Sbjct: 90 GALLPLPEGLSPEEAAAFPVSFLTAYLALK-RAQAR----PGEKVLVQAAAGALGTAAVQ 144
Query: 208 LLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEPEAMHSIAGAGPYDVILDAAGIPLD 266
+ +A + V+ S K L +L Y E G D++L+ G
Sbjct: 145 VARAMGLRVLAAASRPEKLALPLALGAEEAATYA--EVPERAKAWGGLDLVLEVRG---- 198
Query: 267 QINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNAFD--LLKSNFESGE----- 319
+ ++ L A L+ GE
Sbjct: 199 ---KEVE------------------ESLGLL---------AHGGRLVYIGAAEGEVAPIP 228
Query: 320 ----LCKTNTIR--WGFFMPI-PYAVKEINKFIER---GQIKPVIDSKYNFCELPTAFEK 369
+ + + W + V+E F+ +++PV+ + F E AF
Sbjct: 229 PLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRA 288
Query: 370 VQQGHLRGKIIL 381
+ GK+++
Sbjct: 289 LLDRGHTGKVVV 300
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 130 bits (328), Expect = 1e-34
Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 30/240 (12%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAM-LGGYGNVVLNSLRQ 87
A GG + L + V P +VL+++ A ++N D+ G Y
Sbjct: 25 AVHFDKPGGPENLYVKE-VAKPSPGEGEVLLKVAASALNRADLMQRQGQYD--------- 74
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRV-TDLNIDDVVYGVIQPHKQGSFSKLILAD 146
P LG + G + GP I D ++ G ++ +
Sbjct: 75 -------PPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMALLP---GGGQAQYVTVP 124
Query: 147 SALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAV 206
L+ P ++ +AA + LTA+ L + + VL+ GVGT A+
Sbjct: 125 EGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQ----AGDYVLIHAGLSGVGTAAI 180
Query: 207 QLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP---EAMHSIAGAGPYDVILDAAG 262
QL + + T K + L +Y + EA ++ILD G
Sbjct: 181 QLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIG 240
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 128 bits (324), Expect = 3e-34
Identities = 71/375 (18%), Positives = 126/375 (33%), Gaps = 75/375 (20%)
Query: 31 QISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAM-LGGYGNVVLNSLRQLE 89
I GG D + + VK V + A+ VN +D G +
Sbjct: 6 VIHKKGGPDNFVWEE-VKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPL--------- 55
Query: 90 TCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLILADSAL 149
V E P+ +G + + GP VTD + + V + P G++S+ L +
Sbjct: 56 -----VVGEPPIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPL--GAYSQERLYPAEK 108
Query: 150 VHKKPSNISDEEA--AGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQ 207
+ K P ++ ++ AG++ G+TA L T + VL+ A+GG+G + V
Sbjct: 109 LIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVK----PGDYVLIHAAAGGMGHIMVP 164
Query: 208 LLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP----EAMHSIAGAGPYDVILDAAG 262
+ V+ T S + K + L + I+Y+ G G DV+ D+ G
Sbjct: 165 WARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGV-DVVYDSIG 223
Query: 263 IPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSL-------------GLVPGLVKNAFD 309
+ K+ D L G+
Sbjct: 224 ------------------------KDTLQKSLDCLRPRGMCAAYGHASGVAD-----PIR 254
Query: 310 LLKSNFESGELCKTNTIRWGFFMP---IPYAVKEINKFIERGQIKPVIDSKYNFCELPTA 366
+++ G L T W + I K + ++ G + + + E A
Sbjct: 255 VVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAAA 314
Query: 367 FEKVQQGHLRGKIIL 381
+ + G I+L
Sbjct: 315 HKYMGGRQTIGSIVL 329
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 128 bits (324), Expect = 5e-34
Identities = 59/409 (14%), Positives = 113/409 (27%), Gaps = 108/409 (26%)
Query: 29 AWQISSYGGADE---LQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAML-GGYGNVVLNS 84
A + +G + Q + + L +V+V+ VNP D+ + G Y +
Sbjct: 6 AVLYTQHGEPKDVLFTQSFE-IDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPS----- 59
Query: 85 LRQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKLIL 144
+ + E G + +++ G V+ L D V G++ L
Sbjct: 60 --KPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNF--GTWRTHAL 115
Query: 145 ADSALVHK-----------KPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVL 193
+ K KP+ ++ + A + LTA+ L L K
Sbjct: 116 GNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKL----TPGKDWF 171
Query: 194 VL-GASGGVGTMAVQLLKAWDIEVVTTCSGDA-----KDLVTSLNPNLVIDYNEPE---- 243
+ G + VG A Q+ K + ++ + L VI ++
Sbjct: 172 IQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREF 231
Query: 244 -----AMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLG 298
+G + L+ G GK L
Sbjct: 232 GPTIKEWIKQSGGEA-KLALNCVG---------------GKS---------STGIARKLN 266
Query: 299 -----LVPGLVKNAFDLLKSNFESGE---------LCKTNTIRWGFFMPIPY-------- 336
L G S + + K T GF++
Sbjct: 267 NNGLMLTYG------------GMSFQPVTIPTSLYIFKNFTSA-GFWVTELLKNNKELKT 313
Query: 337 -AVKEINKFIERGQIKPVIDSKYNF---CELPTAFEKVQQGHLRGKIIL 381
+ +I + E G++ + + L ++ GK ++
Sbjct: 314 STLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLI 362
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 126 bits (317), Expect = 4e-33
Identities = 57/388 (14%), Positives = 115/388 (29%), Gaps = 50/388 (12%)
Query: 27 TAAWQISSY---GGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAML-GGYG---- 78
+A Q+ S G EL + + TP +VL+ ++A +NP D+ +L G
Sbjct: 3 HSALQLRSRIKSSGELELSLDS-IDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTA 61
Query: 79 --------NVVLNSLRQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGV 130
+V + + S+ L+ + +G + G +V G +
Sbjct: 62 KASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAA 121
Query: 131 IQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDK 190
I +S+ + P + + A LTA ++ G
Sbjct: 122 IGG---AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMRLEG-----HS 173
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP----EAM 245
++ A+ +G M Q+ I++V + DL+ + V + P +
Sbjct: 174 ALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLT 233
Query: 246 HSIAGAGPYDVILDAAGIP--LDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGL 303
++ G + DA G QI + + ++ S K G +
Sbjct: 234 EALVSTGA-TIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTS 292
Query: 304 VKNAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIER------GQIKPVIDSK 357
F + N +R +
Sbjct: 293 PTEFNRNFGMA-------WGMGGWLLFPFLQKIGRERANALKQRVVAELKTTFASHYSKE 345
Query: 358 YNFCELPTAFEKVQQGHLR---GKIILN 382
+ E+ + + + R K ++N
Sbjct: 346 ISLAEVLDL-DMIAVYNKRATGEKYLIN 372
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 124 bits (314), Expect = 9e-33
Identities = 73/386 (18%), Positives = 140/386 (36%), Gaps = 76/386 (19%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDV-AMLGGYGNVVLNSLRQ 87
A ++ G LQ + P K VL++++A V DV G +GN+ +
Sbjct: 3 AVRLVEIGKPLSLQ---EIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVE--- 56
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQP-------------- 133
+ ++ P+TLG + GKI G V + D+V + P
Sbjct: 57 ------DLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLV--AVNPWQGEGNCYYCRIGE 108
Query: 134 ------------HKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAA 181
+ G++++ ++ K ++ EAA + +G+T + A++ +
Sbjct: 109 EHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKAS- 167
Query: 182 LGLVYPRDKRVLVLGASGGVGTMAVQLLKA-WDIEVVTTCSGDAK-DLVTSLNPNLVIDY 239
+ P +LV+GA GG+GTMAVQ+ KA ++ + + + VI+
Sbjct: 168 ---LDPTK-TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINA 223
Query: 240 NEP---EAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDS 296
+ + I + D ++D ++ Y L K+V
Sbjct: 224 SMQDPLAEIRRITESKGVDAVIDLNNSE-KTLSVYPKALAKQ--GKYVM----------- 269
Query: 297 LGLVPGLVK-NAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIERGQIKPVID 355
+GL + +A + G + I + E G++KP+I
Sbjct: 270 VGLFGADLHYHAPLITL---------SEIQFV-GSLVGNQSDFLGIMRLAEAGKVKPMIT 319
Query: 356 SKYNFCELPTAFEKVQQGHLRGKIIL 381
E A + ++ G+ +L
Sbjct: 320 KTMKLEEANEAIDNLENFKAIGRQVL 345
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 127 bits (321), Expect = 3e-32
Identities = 88/374 (23%), Positives = 132/374 (35%), Gaps = 75/374 (20%)
Query: 24 STRTAAWQISSYGGADELQFN-DNVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVL 82
+ + G D L + T L +V + M+A VN D + G
Sbjct: 207 DGTGWRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALG------ 260
Query: 83 NSLRQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHKQGSFSKL 142
+ +LG + G +V GP VT L D V G+I +F L
Sbjct: 261 -------------MYPGVASLGSEGAGVVVETGPGVTGLAPGDRVMGMIP----KAFGPL 303
Query: 143 ILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVG 202
+AD +V + P+ S AA V LTA+ AL A L + +LV A+GGVG
Sbjct: 304 AVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLR----PGESLLVHSAAGGVG 359
Query: 203 TMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYN----EPEAMHSIAGAGPYDVIL 258
A+QL + EV T S D V L+ + E + + + G G DV+L
Sbjct: 360 MAAIQLARHLGAEVYATASEDKWQAV-ELSREHLASSRTCDFEQQFLGATGGRG-VDVVL 417
Query: 259 DA-AGIPLDQINSYLP----FLKTGKFSKFVTLR-SPFLKNT-----DSLGLVPGLVKNA 307
++ AG D LP FL+ GK + + D++ P +
Sbjct: 418 NSLAGEFADASLRMLPRGGRFLELGKTDVRDPVEVADAHPGVSYQAFDTVEAGPQRIGEM 477
Query: 308 FDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIERGQIKPVIDSKYNFCELPTAF 367
L FE L P+P ++ + P A
Sbjct: 478 LHELVELFEGRVL-----------EPLPVTA-------------------WDVRQAPEAL 507
Query: 368 EKVQQGHLRGKIIL 381
+ Q GK++L
Sbjct: 508 RHLSQARHVGKLVL 521
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 116 bits (294), Expect = 4e-30
Identities = 62/244 (25%), Positives = 93/244 (38%), Gaps = 38/244 (15%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGG-YGNVVLNSLRQ 87
I GG D +++ D P + +++L++ K VN I+ G Y
Sbjct: 11 VILIDEIGGYDVIKYED-YPVPSISEEELLIKNKYTGVNYIESYFRKGIYP--------- 60
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDD-VVYGVIQPHKQGSFSKLILAD 146
E P LGR+ G +VAKG VT+ + D V Y +SK+
Sbjct: 61 ---------CEKPYVLGREASGTVVAKGKGVTNFEVGDQVAYISNSTF--AQYSKISSQG 109
Query: 147 SALVHKKPSNISDEE---AAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGT 203
+ K P SDEE A L LTA S + + VL+ A+GGVG
Sbjct: 110 PVM--KLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVK----KGDYVLLFAAAGGVGL 163
Query: 204 MAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEP----EAMHSIAGAGPYDVIL 258
+ QLLK + S D K + +I+ ++ + + G G D
Sbjct: 164 ILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGV-DASF 222
Query: 259 DAAG 262
D+ G
Sbjct: 223 DSVG 226
Score = 29.9 bits (68), Expect = 1.5
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 337 AVKEINKFIERGQIKPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
E + ++ I Y + TA ++ GK++L
Sbjct: 286 YSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVGKLVL 330
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 90.0 bits (224), Expect = 3e-20
Identities = 63/385 (16%), Positives = 126/385 (32%), Gaps = 80/385 (20%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDV-AMLGGYGNVVLNSLRQ 87
A + + ++ +V P + ++VL+ + V D+ G
Sbjct: 6 AALLKKFSEPLSIE---DVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFR---- 58
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPH------------- 134
P+ LG + G IV G + + D V V+
Sbjct: 59 -----------LPIILGHENAGTIVEVGE-LAKVKKGDNV--VVYATWGDLTCRYCREGK 104
Query: 135 -------------KQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAA 181
G FS+ +L S+ K +++S EAA + G T+ A++
Sbjct: 105 FNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALP 164
Query: 182 LGLVYPRDKRVLVLGASGGVGTMAVQLLKA--WDIEVVTTCSGDAK-DLVTSLNPNLVID 238
+ V+++ GG+ +Q+LKA +I +V D L + V +
Sbjct: 165 FISKFAEP--VVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSE 222
Query: 239 YNEP-EAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSL 297
+ ++ + + +D G + + L + +
Sbjct: 223 MKDAESLINKLTDGLGASIAIDLVGTE-ETTYNLGKLLAQE--GAIIL-----------V 268
Query: 298 GLVPGLVK-NAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIERGQIKPVIDS 356
G+ V AFD + G ++++ + E G+IKP I
Sbjct: 269 GMEGKRVSLEAFDTAV---------WNKKLL-GSNYGSLNDLEDVVRLSESGKIKPYI-I 317
Query: 357 KYNFCELPTAFEKVQQGHLRGKIIL 381
K ++ AF + +G + G+ ++
Sbjct: 318 KVPLDDINKAFTNLDEGRVDGRQVI 342
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 90.7 bits (225), Expect = 1e-19
Identities = 61/348 (17%), Positives = 113/348 (32%), Gaps = 68/348 (19%)
Query: 52 LKSKDVLVEMKAVSVNPIDVAM-LGGYGNVVLNSLRQLETCSVEPVLEFPLTLGRDFCGK 110
+D L + S+N DV + G P ++ + +
Sbjct: 1557 ASCQDRLCSVYYTSLNFRDVMLATGKLS---------------------PDSIPGKWLTR 1595
Query: 111 IVAKG-PRVTDLNIDDVVYGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTG 169
G V G++ + +L + PS + EEAA V
Sbjct: 1596 DCMLGMEFSGRDASGRRVMGMVP---AEGLATSVLLLQHATWEVPSTWTLEEAASVPIVY 1652
Query: 170 LTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK-DLV 228
TA+ +L + + + VL+ SGGVG A+ + + V TT K +
Sbjct: 1653 TTAYYSLVVRGRMQ----PGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYL 1708
Query: 229 TSLNPNLVIDY-------NEPEAMHSIAGAGPYDVILDA-AGIPLDQINSYLP----FLK 276
+ P L + + + D++L++ A L L FL+
Sbjct: 1709 QARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLE 1768
Query: 277 TGKFSKFVTLRSPFLKNTDSLG---LVPGLVKNAFDLLKSNFESGELCKTNTIRWGFFMP 333
GKF L + +LG + + + L E G
Sbjct: 1769 IGKF----DLSNN-----HALGMAVFLKNVTFHGILLDSLFEEGGAT------------- 1806
Query: 334 IPYAVKEINKFIERGQIKPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
+ + I+ G ++P+ + + ++ AF + QG GK+++
Sbjct: 1807 WQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIGKVVI 1854
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 83.0 bits (206), Expect = 8e-18
Identities = 67/374 (17%), Positives = 115/374 (30%), Gaps = 90/374 (24%)
Query: 46 NVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQLETCSVEPVLEFPLTLGR 105
NV P D+LV+++A + D +L G E P+TLG
Sbjct: 39 NVGIPEPGPDDLLVKVEACGICGTDRHLLHG-----------------EFPSTPPVTLGH 81
Query: 106 DFCGKIVAKGPRVTDLNIDDVVYGVIQP--------------------------HKQGSF 139
+FCG +V G V D+ + P H+ G F
Sbjct: 82 EFCGIVVEAGSAVRDIAPGARI--TGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGF 139
Query: 140 SKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASG 199
++ +L + P + A G V +LG G
Sbjct: 140 AEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAG------STVAILGG-G 192
Query: 200 GVGTMAVQLLK---AWDIEVVTTCSGDAKDLVTSLNPNLVIDYNE---PEAMHSIAGAGP 253
+G + VQL + A + +++T + L + +D + EA+ G P
Sbjct: 193 VIGLLTVQLARLAGATTV-ILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVP 251
Query: 254 Y--DVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVKNAFDLL 311
DV+++ AG+ + + K G V LG++P K +
Sbjct: 252 GGVDVVIECAGVA-ETVKQSTRLAKAG--GTVVI-----------LGVLPQGEKVEIEPF 297
Query: 312 KSNFESGELCKTNTIR--WGFFMPIPYAVKEINKFIERGQI--KPVIDSKYNFCELPTAF 367
F EL + + A + G I +I + + E P
Sbjct: 298 DILFR--EL----RVLGSFINPFVHRRAA----DLVATGAIEIDRMISRRISLDEAPDVI 347
Query: 368 EKVQQGHLRGKIIL 381
K+++
Sbjct: 348 SNPAAAG-EVKVLV 360
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 75.7 bits (187), Expect = 2e-15
Identities = 63/329 (19%), Positives = 117/329 (35%), Gaps = 73/329 (22%)
Query: 94 EPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV------------------------YG 129
+P+TLG +F G I A G V DL+ D V Y
Sbjct: 48 NGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYD 107
Query: 130 VIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGV--LYTGLTAWSALQITAALGLVYP 187
I + G F++ I+ V P+++ E+ A + + GL A+ Q
Sbjct: 108 FIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCE------- 160
Query: 188 RDKRVLVLGASGGVGTMAVQLLKAWDIE--VVTTCSGDAKDLVTSLNPNLVIDYNE---P 242
+K V+++GA G +G +A+Q A + S + L S + +E P
Sbjct: 161 -NKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAP 218
Query: 243 EAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPG 302
+ + +IL+ AG+P + + ++ + G
Sbjct: 219 QMQSVLRELRFNQLILETAGVP-QTVELAVEIAGPH--AQLALV---------------G 260
Query: 303 LVKNAFDLLKSNFE---SGELCKTNTIRWGFFM--PIPYAVKEINK---FIERGQI--KP 352
+ L + F EL T+ G +M P+ +E + ++ +P
Sbjct: 261 TLHQDLHLTSATFGKILRKEL----TVI-GSWMNYSSPWPGQEWETASRLLTERKLSLEP 315
Query: 353 VIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
+I + +F A + + + GK++L
Sbjct: 316 LIAHRGSFESFAQAVRDIARNAMPGKVLL 344
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 75.7 bits (187), Expect = 2e-15
Identities = 71/320 (22%), Positives = 121/320 (37%), Gaps = 77/320 (24%)
Query: 99 FPLTLGRDFCGKIVAKGPRVTDLNIDDVV----------------------------YGV 130
PL G + G + GP VT L + D V G
Sbjct: 55 LPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGY 114
Query: 131 IQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAAL-GLVYPRD 189
G +++ A + V K P N+S EEAA + G+T + AL++T A G
Sbjct: 115 ---SVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPG------ 165
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEPEAMHSI 248
+ V + G GG+G +AVQ KA + VV GD K +L L +LV++ + +A +
Sbjct: 166 EWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFM 224
Query: 249 -AGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVK-N 306
G + A S ++ G V +GL P +
Sbjct: 225 KEKVGGVHAAVVTAVSKPA-FQSAYNSIRRG--GACVL-----------VGLPPEEMPIP 270
Query: 307 AFDLLKSNFE-----SGELCKTNTIRWGFFMPIPYAVKEINKFIERGQIKPVIDSKYNFC 361
FD + + + G T + ++E +F G++K +I
Sbjct: 271 IFDTVLNGIKIIGSIVG------TRK---------DLQEALQFAAEGKVKTII-EVQPLE 314
Query: 362 ELPTAFEKVQQGHLRGKIIL 381
++ F+++ +G + G+++L
Sbjct: 315 KINEVFDRMLKGQINGRVVL 334
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 75.7 bits (187), Expect = 2e-15
Identities = 75/392 (19%), Positives = 134/392 (34%), Gaps = 95/392 (24%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDV-AMLGGYGNVVLNSLRQ 87
G +L++ D + P K+ ++L+ +K V D+ A G + V
Sbjct: 8 GVIFYESHG--KLEYKD-IPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPV------ 58
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV-------------------- 127
+ PL G + G +V G V I D
Sbjct: 59 ----------KLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNE 108
Query: 128 ----------YGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQ 177
Y GSF + AD+ P + A +L G+T + AL+
Sbjct: 109 SNCPHADLSGYTH-----DGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALK 163
Query: 178 ITAAL-GLVYPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNL 235
+ G V + GA+GG+G++AVQ KA V+ G+ K +L S+ +
Sbjct: 164 SANLMAG------HWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEV 217
Query: 236 VIDYNEPEAMHSI---AGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLK 292
ID+ + + + A G +++ + I + +++ V
Sbjct: 218 FIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAA-IEASTRYVRAN--GTTVL------- 267
Query: 293 NTDSLGLVPG--LVKNAFDL-LKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIERGQ 349
+G+ G + F+ +KS G +E F RG
Sbjct: 268 ----VGMPAGAKCCSDVFNQVVKSISIVGSY--VGNRA---------DTREALDFFARGL 312
Query: 350 IKPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
+K I LP +EK+++G + G+ ++
Sbjct: 313 VKSPI-KVVGLSTLPEIYEKMEKGQIVGRYVV 343
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 75.3 bits (186), Expect = 3e-15
Identities = 70/394 (17%), Positives = 125/394 (31%), Gaps = 106/394 (26%)
Query: 35 YGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPI---DVAML--GGYGNVVLNSLRQLE 89
+ L D P ++LV ++A S I D+ + +
Sbjct: 7 LAPEEGLTLVD-RPVPEPGPGEILVRVEAAS---ICGTDLHIWKWDAWA----------- 51
Query: 90 TCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPHK-------------- 135
+ PL G +F G + A GP V + D V ++ H
Sbjct: 52 ----RGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHV--SLESHIVCHACPACRTGNYH 105
Query: 136 ------------QGSFSKLILADSALVHKKPSNISDEEAA-----GVLYTGLTAWSALQI 178
G F++ ++ + P ++ E AA G +
Sbjct: 106 VCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGN-----AVHTVYAG 160
Query: 179 TAALGLVYPRDKRVLVLGASGGVGTMAVQLLK---AWDIEVVTTCSGD----AKDLVTS- 230
+ G K VL+ GA G +G MA +++ A I +V+ + A+
Sbjct: 161 SGVSG------KSVLITGA-GPIGLMAAMVVRASGAGPI-LVSDPNPYRLAFARPYADRL 212
Query: 231 LNPNLVIDYNEPEAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPF 290
+NP + + E + + G+G +V+L+ +G I+ L L G + L P
Sbjct: 213 VNPL---EEDLLEVVRRVTGSGV-EVLLEFSGNE-AAIHQGLMALIPG--GEARILGIP- 264
Query: 291 LKNTDSLGLVPGLVKNAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIERGQI 350
+ L LV L +T W + G++
Sbjct: 265 -SDPIRFDLAGELVMRGITAFGIA--GRRLWQT----W------MQGT----ALVYSGRV 307
Query: 351 --KPVIDSKYNFCELPTAFEKVQQGHLRGKIILN 382
P++ + AF + G K+IL+
Sbjct: 308 DLSPLLTHRLPLSRYREAFGLLASGQ-AVKVILD 340
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 74.9 bits (185), Expect = 4e-15
Identities = 50/218 (22%), Positives = 87/218 (39%), Gaps = 43/218 (19%)
Query: 98 EFPLTLGRDFCGKIVAKGPRVTDLNIDDVV-----------------------------Y 128
+P+ G + G++V G V+ + D+V Y
Sbjct: 62 NYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSY 121
Query: 129 GVIQPHK---QGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLV 185
+ + QG F+K + V K P ++ E+AA +L G+T +S L GL
Sbjct: 122 NDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLS---HFGLK 178
Query: 186 YPRDKRVLVLGASGGVGTMAVQLLKAWDIEVV--TTCSGDAKDLVTSLNPNLVIDYNEPE 243
P R +LG GGVG M V++ KA V ++ + ++ + L + + ++
Sbjct: 179 QP-GLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQA 236
Query: 244 AMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKT-GKF 280
M +A + D ++D + + YL LK GK
Sbjct: 237 KMSELADS--LDYVIDTVPVHHA-LEPYLSLLKLDGKL 271
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 74.9 bits (185), Expect = 4e-15
Identities = 63/313 (20%), Positives = 114/313 (36%), Gaps = 63/313 (20%)
Query: 99 FPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGV---------------------IQP---- 133
P G + G + A G V+ + D V GV +
Sbjct: 57 LPFIPGHEGVGYVSAVGSGVSRVKEGDRV-GVPWLYSACGYCEHCLQGWETLCEKQQNTG 115
Query: 134 -HKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAAL-GLVYPRDKR 191
G + + ++AD V P + E A +L G+T + L++T G +
Sbjct: 116 YSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDTRPG------QW 169
Query: 192 VLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEPEAMHSI-A 249
V++ G GG+G +AVQ +A + V DAK +L L + ++ + + +
Sbjct: 170 VVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQK 228
Query: 250 GAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGLVK-NAF 308
G +L A P + + ++ G GL PG F
Sbjct: 229 EIGGAHGVLVTAVSPKA-FSQAIGMVRRG--GTIAL-----------NGLPPGDFGTPIF 274
Query: 309 DLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIERGQIKPVIDSKYNFCELPTAFE 368
D+ + K TIR G + ++E F G +K + S ++ F
Sbjct: 275 DV---------VLKGITIR-GSIVGTRSDLQESLDFAAHGDVKATV-STAKLDDVNDVFG 323
Query: 369 KVQQGHLRGKIIL 381
++++G + G+++L
Sbjct: 324 RLREGKVEGRVVL 336
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 74.6 bits (184), Expect = 6e-15
Identities = 70/391 (17%), Positives = 134/391 (34%), Gaps = 89/391 (22%)
Query: 29 AWQISSYGGADELQFNDNVKTP-ILKSKDVLVEMKAVSVNPIDV-AMLGGYGNVVLNSLR 86
A ++ Y ++ +V P + DV+V + V D+ + G + ++ L
Sbjct: 18 AARLHEYNKPLRIE---DVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKL- 73
Query: 87 QLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPH------------ 134
P TLG + G I V L D V ++ P
Sbjct: 74 -------------PYTLGHENVGYIEEVAEGVEGLEKGDPV--ILHPAVTDGTCLACRAG 118
Query: 135 --------------KQGSFSKLILADSALVHKKPSNISDE---EAAGVLYTGLTAWSALQ 177
G F++ + V K P +IS E E A + G+TA+ A++
Sbjct: 119 EDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVK 178
Query: 178 ITAALGLVYPRDKRVLVLGASGGVGTMAVQLLKAW-DIEVVTTCSGDAK-DLVTSLNPNL 235
A +YP V ++G GG+G +AVQLLK V+ + K L L +
Sbjct: 179 KAART--LYPGA-YVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH 234
Query: 236 VIDYNE--PEAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKN 293
V+D + + + +V +D G ++ L + +
Sbjct: 235 VVDARRDPVKQVMELTRGRGVNVAMDFVGSQ-ATVDYTPYLLGRM--GRLII-------- 283
Query: 294 TDSLGLVPGLVKNAFDLLKSNFESGELCKTNTIR---WGFFMPIPYAVKEINKFIERGQI 350
+G L ++ + G ++ + V +G++
Sbjct: 284 ---VGYGGELRFPTIRVIS---------SEVSFEGSLVGNYVELHELV----TLALQGKV 327
Query: 351 KPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
+ + + E+ E++++G + G+ +L
Sbjct: 328 RVEV-DIHKLDEINDVLERLEKGEVLGRAVL 357
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 74.3 bits (183), Expect = 6e-15
Identities = 56/392 (14%), Positives = 103/392 (26%), Gaps = 95/392 (24%)
Query: 37 GADELQFNDNVKTPILKSKDVLVEMKAVSVNPI---DV-AMLGGYGNVVLNSLRQLETCS 92
G D + P +S + LV V + D + GG+G
Sbjct: 9 GEDRPVVIE-KPRPEPESGEALVRTLRVG---VCGTDHEVIAGGHGG------------- 51
Query: 93 VEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV------------------------- 127
P E L LG + G +V T+L D+V
Sbjct: 52 -FPEGEDHLVLGHEAVGVVVDPN--DTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAP 108
Query: 128 ----YGVIQPHKQGSFSKLILADSALVHKKPSNISDE----EAAGVLYTGLTAWSALQIT 179
+ G S+ + + + P + ++ E + A +
Sbjct: 109 DGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQAELGFLIEPISI---TEKALEHAYAS 165
Query: 180 AALGLVYPRDKRVLVLGASGGVGTMAVQLLKAWDI---EVVTTCSGD----AKDLVTSLN 232
+ P VLG G +G + + +LK D + D D++ L+
Sbjct: 166 RSAFDWDP--SSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD 222
Query: 233 PNLVIDYNEPEAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLK 292
V P D I +A G P + L L
Sbjct: 223 ATYVDSRQTPVEDVPDVYEQM-DFIYEATGFP-KHAIQSVQALAPN--GVGALL------ 272
Query: 293 NTDSLGLVPGLVKNAFDLLKSNFESGELCKTN-TIRWGFFMPIPYAVKEINKFIERGQI- 350
G+ + + + E+ N + + + F + +
Sbjct: 273 ---------GVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVEHFEAATVTFTKLPKWF 323
Query: 351 -KPVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
+ ++ + E AF+ K +
Sbjct: 324 LEDLVTGVHPLSEFEAAFDDDDTT---IKTAI 352
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 74.2 bits (183), Expect = 6e-15
Identities = 62/390 (15%), Positives = 126/390 (32%), Gaps = 86/390 (22%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQL 88
A Q + G + ++ TP ++L+++ A + D+ ++
Sbjct: 3 AVQYTEIGSEPVVV---DIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQY------- 52
Query: 89 ETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV--------------------- 127
PLTLG + G + G VT + D V
Sbjct: 53 -------AYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENY 105
Query: 128 --------YGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQIT 179
GS ++ ++ DSA ++ AA + GLT + A+
Sbjct: 106 CTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRV 165
Query: 180 AALGLVYPRDKRVLVLGASGGVGTMAVQLLKAW-DIEVVTTCSGDAK-DLVTSLNPNLVI 237
L+ P +V+G GG+G + +Q+L+A V+ D + L + + +
Sbjct: 166 LP--LLGP-GSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAV 221
Query: 238 DYNE--PEAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTD 295
+A+ + G + D G I++ +
Sbjct: 222 KSGAGAADAIRELTGGQGATAVFDFVGAQ-STIDTAQQVVAVD--GHISV---------- 268
Query: 296 SLGLVPG-LVKNAFDLLKSNFESGELCKTNTIR---WGFFMPIPYAVKEINKFIERGQIK 351
+G+ G K F ++ ++ WG + V G++
Sbjct: 269 -VGIHAGAHAKVGFFMIP---------FGASVVTPYWGTRSELMEVV----ALARAGRLD 314
Query: 352 PVIDSKYNFCELPTAFEKVQQGHLRGKIIL 381
+ E P A+ ++++G +RG+ ++
Sbjct: 315 IHT-ETFTLDEGPAAYRRLREGSIRGRGVV 343
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 73.8 bits (182), Expect = 7e-15
Identities = 54/268 (20%), Positives = 94/268 (35%), Gaps = 68/268 (25%)
Query: 37 GADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAML--GGYGNVVLNSLRQLETCSVE 94
++L+ + P K +VL++M V + DV G +
Sbjct: 12 KQNDLRL-EQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIAD--------------- 55
Query: 95 PVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV--------------------------- 127
+++ P+ +G + G +V G V L D V
Sbjct: 56 FIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF 115
Query: 128 YGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGV--LYTGLTAWSALQITAALGLV 185
P G+ ++ + + HK P N+S EE A + L G+ A +
Sbjct: 116 CAT--PPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLG---- 169
Query: 186 YPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK---------DLVTSLNPNLV 236
VLV+GA G +G ++V KA+ VV T + D+ ++P
Sbjct: 170 ----TTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKE 224
Query: 237 IDYNEPEAMHSIAGAGPYDVILDAAGIP 264
+ + E + S G P +V +D +G
Sbjct: 225 EESSIIERIRSAIGDLP-NVTIDCSGNE 251
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 73.8 bits (182), Expect = 9e-15
Identities = 72/382 (18%), Positives = 131/382 (34%), Gaps = 101/382 (26%)
Query: 46 NVKTPILKSKDVLVEMKAVSVNPI---DVAML--GGYGNVVLNSLRQLETCSVEPVLEFP 100
V P +VL+++ A S I D+ + + ++ P
Sbjct: 21 EVDVPKPGPGEVLIKVLATS---ICGTDLHIYEWNEWAQ---------------SRIKPP 62
Query: 101 LTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQPH-------------------------- 134
+G + G++V GP V + + D V ++ H
Sbjct: 63 QIMGHEVAGEVVEIGPGVEGIEVGDYV--SVETHIVCGKCYACRRGQYHVCQNTKIFGVD 120
Query: 135 KQGSFSKLILADSALVHKKPSNISDEEAA-----GVLYTGLTAWSALQITAALGLVYPRD 189
G F++ + + + K P +I E A G A + G
Sbjct: 121 TDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGN------AVDTVLAGPISG------ 168
Query: 190 KRVLVLGASGGVGTMAVQLLK---AWDIEVVTTCSGDAKDLVTSLNPNLVIDYNE---PE 243
K VL+ GA G +G + + + K A+ + +V+ S ++L + + VI+ E +
Sbjct: 169 KSVLITGA-GPLGLLGIAVAKASGAYPV-IVSEPSDFRRELAKKVGADYVINPFEEDVVK 226
Query: 244 AMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGL 303
+ I DV L+ +G P + L + + LGL PG
Sbjct: 227 EVMDITDGNGVDVFLEFSGAP-KALEQGLQAVTPA--GRVSL-----------LGLYPGK 272
Query: 304 VKNAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIERGQI--KPVIDSKY-NF 360
V D L TI + +++ ++ G++ P+I KY F
Sbjct: 273 V--TIDFNNLII-FKAL----TIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGF 325
Query: 361 CELPTAFEKVQQGHLRGKIILN 382
+ AFE ++ G GK++
Sbjct: 326 DKYEEAFELMRAGK-TGKVVFM 346
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 72.6 bits (179), Expect = 2e-14
Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 43/217 (19%)
Query: 99 FPLTLGRDFCGKIVAKGPRVTDLNIDDVV-----------------------------YG 129
+PL G + G++ G +V +N+ D V Y
Sbjct: 70 YPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYA 129
Query: 130 VIQPHK---QGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVY 186
I G +S ++A+ + + P N+ + A +L G+T +S L+ GL
Sbjct: 130 SIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLK---YFGLDE 186
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKAWDIEVV--TTCSGDAKDLVTSLNPNLVIDYNEPEA 244
P K + ++G GG+G +AV+ KA+ +V +T ++ + + + + + E
Sbjct: 187 P-GKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQ 244
Query: 245 MHSIAGAGPYDVILDAAGIPLDQINSYLPFLKT-GKF 280
M + AG D I+D + LK+ GK
Sbjct: 245 MQAAAGT--LDGIIDTVSAVHP-LLPLFGLLKSHGKL 278
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 68.4 bits (168), Expect = 8e-14
Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 26/195 (13%)
Query: 147 SALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAV 206
S LV P ++D EAA LTAW +L L +RVL+ A+GGVG AV
Sbjct: 1 SDLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLS----PGERVLIHSATGGVGMAAV 56
Query: 207 QLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYN----EPEAMHSIAGAGPYDVILDA- 260
+ K + TT DAK ++++ L V D E + G G DV+L++
Sbjct: 57 SIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYG-VDVVLNSL 115
Query: 261 AGIPLDQINSYLP----FLKTGKFSKFVTLR---SPFLKNT-----DSLGLV---PGLVK 305
AG + + L F++ GK + + K+ D + P +
Sbjct: 116 AGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYR 175
Query: 306 NAFDLLKSNFESGEL 320
+ + G+L
Sbjct: 176 QLLQHILQHVADGKL 190
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 69.5 bits (171), Expect = 3e-13
Identities = 51/271 (18%), Positives = 88/271 (32%), Gaps = 75/271 (27%)
Query: 37 GADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAML--GGYGNVVLNSLRQLETCSVE 94
G +L+ + P +VL+ M +V + DV G GN
Sbjct: 15 GPGDLRLEN-YPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGN--------------- 58
Query: 95 PVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV--------------------------- 127
+++ P+ LG + G + G V L D V
Sbjct: 59 FIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF 118
Query: 128 YGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAA-----GVLYTGLTAWSALQITAAL 182
P G+ + ++A +K P N++ EE A V +
Sbjct: 119 CAT--PPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSV---------GIHACRRG 167
Query: 183 GLVYPRDKRVLVLGASGGVGTMAVQLLK---AWDIEVVTTCSGDAKDLVTSLNPNLVIDY 239
G+ +VLV GA G +G + + + K A + VVT S + +LV+
Sbjct: 168 GV--TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQV-VVTDLSATRLSKAKEIGADLVLQI 223
Query: 240 NEP------EAMHSIAGAGPYDVILDAAGIP 264
++ + G P +V ++ G
Sbjct: 224 SKESPQEIARKVEGQLGCKP-EVTIECTGAE 253
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 69.2 bits (170), Expect = 3e-13
Identities = 48/272 (17%), Positives = 78/272 (28%), Gaps = 75/272 (27%)
Query: 37 GADELQFNDNVKTPILKSKDVLVEMKAVSVNPI---DVAML--GGYGNVVLNSLRQLETC 91
K LK +V V +++ I DV G G
Sbjct: 23 SEASPSLESVQKGEELKEGEVTVAVRSTG---ICGSDVHFWKHGCIG------------- 66
Query: 92 SVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV------------------------ 127
++E LG + G+++A P V + + D V
Sbjct: 67 --PMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCER 124
Query: 128 ---YGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGV--LYTGLTAWSALQITAAL 182
P G + + + HK N+S E A + L L + L
Sbjct: 125 VDFLST--PPVPGLLRRYVNHPAVWCHKIG-NMSYENGAMLEPLSVAL--AGLQRAGVRL 179
Query: 183 GLVYPRDKRVLVLGASGGVGTMAVQLLK---AWDIEVVTTCSGDAKDLVTSLNPNLVIDY 239
G VL+ GA G +G + + K A + V+T + P +V
Sbjct: 180 G------DPVLICGA-GPIGLITMLCAKAAGACPL-VITDIDEGRLKFAKEICPEVVTHK 231
Query: 240 NEP-------EAMHSIAGAGPYDVILDAAGIP 264
E + + G V L+ G+
Sbjct: 232 VERLSAEESAKKIVESFGGIEPAVALECTGVE 263
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 68.4 bits (168), Expect = 6e-13
Identities = 45/218 (20%), Positives = 80/218 (36%), Gaps = 45/218 (20%)
Query: 99 FPLTLGRDFCGKIVAKGPRVTDLNIDDVV-----------------------------YG 129
+P G + G++VA G +V D+V Y
Sbjct: 76 YPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYN 135
Query: 130 VIQPHK----QGSFSKLILADSALVHKKPSNISDEEAAG-VLYTGLTAWSALQITAALGL 184
P + G +S+ I+ V + A +L G+T +S L+ G
Sbjct: 136 SPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLR-HWQAG- 193
Query: 185 VYPRDKRVLVLGASGGVGTMAVQLLKAWDIEV-VTTCSGDAKDLVTSLNPNLVIDYNEPE 243
K+V V+G GG+G M ++L A V T S ++ +L + V++ +
Sbjct: 194 ---PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNAD 249
Query: 244 AMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKT-GKF 280
M + + +D IL+ P + ++ + LK G
Sbjct: 250 EMAAHLKS--FDFILNTVAAPHN-LDDFTTLLKRDGTM 284
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 67.8 bits (166), Expect = 1e-12
Identities = 35/258 (13%), Positives = 71/258 (27%), Gaps = 49/258 (18%)
Query: 56 DVLVEMKAVSVNPIDVAML-GGYGNVVLNSLRQLETCSVEPVLEFPLTLGRDFCGKIVAK 114
+ + + D ++ G L P + L LG + G +
Sbjct: 28 KIKIRTIYNGICGADREIVNGKLTLSTL------------PKGKDFLVLGHEAIGVVEES 75
Query: 115 GP------RVT-DLNI-----------------DDVVYGVIQPHKQGSFSKLILADSALV 150
V G + D +
Sbjct: 76 YHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYL 135
Query: 151 HKKPSNISDE----EAAGV----LYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVG 202
K P +I D + + L + + +VLV+G G +G
Sbjct: 136 VKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCR-KVLVVGT-GPIG 193
Query: 203 TMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHSI--AGAGPYDVILDA 260
+ L + + +EV + ++ ++ +Y + G +DVI+DA
Sbjct: 194 VLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDA 253
Query: 261 AGIPLDQINSYLPFLKTG 278
G ++ + + +P L
Sbjct: 254 TGADVNILGNVIPLLGRN 271
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 67.0 bits (164), Expect = 2e-12
Identities = 57/383 (14%), Positives = 112/383 (29%), Gaps = 92/383 (24%)
Query: 51 ILKSKDVLVEMKAVSVNPI---DVAMLGGYGNVVLNSLRQLETCSVEPVLEFPLTLGRDF 107
I K ++++++KA I DV M + + FP+TLG +F
Sbjct: 52 IEKPTEIIIKVKACG---ICGSDVHMAQTDEEGYIL---------YPGLTGFPVTLGHEF 99
Query: 108 CGKIVAKGPRVTDLNIDDVV------------------------------YGVIQPHKQG 137
G +V GP + + + + G
Sbjct: 100 SGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDG 159
Query: 138 SFSKLILADSALVHKKP-------SNISDEEAAGV--LYTGLTAWSALQITAALGLVYPR 188
+F++ + D+ + + V A G
Sbjct: 160 AFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPG----- 214
Query: 189 DKRVLVLGASGGVGTMAVQLLKAW---DIEVVTTCSGDAKDLVTSLNPNLVIDYNE---P 242
V++LG G +G AV +LK + +++ S ++L L + VID +
Sbjct: 215 -DNVVILGG-GPIGLAAVAILKHAGASKV-ILSEPSEVRRNLAKELGADHVIDPTKENFV 271
Query: 243 EAMHSI-AGAGPYDVILDAAGIP--LDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGL 299
EA+ G G + L+A G+P + + + G + +
Sbjct: 272 EAVLDYTNGLGA-KLFLEATGVPQLVWPQIEEVIWRARGINATVAIV------------- 317
Query: 300 VPGLVKNAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIERG-QIKPVIDSKY 358
L F+ I + + G + +I
Sbjct: 318 --ARADAKIPLTGEVFQVRRA----QIVGSQGHSGHGTFPRVISLMASGMDMTKIISKTV 371
Query: 359 NFCELPTAFEKVQQGHLRGKIIL 381
+ E+P +++Q K+ +
Sbjct: 372 SMEEIPEYIKRLQTDKSLVKVTM 394
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 64.1 bits (157), Expect = 1e-11
Identities = 47/227 (20%), Positives = 69/227 (30%), Gaps = 68/227 (29%)
Query: 99 FPLTLGRDFCGKIVAKGPRVTDLNIDDVV-----------------------------YG 129
+P+ G + G I G V I DVV Y
Sbjct: 58 YPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYD 117
Query: 130 VIQPHK-----QGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGL 184
+ G +S I+ D V N E+ A +L G+T +S L+ + +
Sbjct: 118 CLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLK-FSKVT- 175
Query: 185 VYPRDKRVLVLGASGGVGTMAVQLLKAWDIEVV--TTCSG---DAKDL-----VTSLNPN 234
+ +V V G GG+G+MAV+ A EV DA + T
Sbjct: 176 ---KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTD---- 227
Query: 235 LVIDYNEPEAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKT-GKF 280
P+ D I+ D + YL L G
Sbjct: 228 -------PKQC-----KEELDFIISTIPTHYD-LKDYLKLLTYNGDL 261
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 58.1 bits (141), Expect = 1e-09
Identities = 52/195 (26%), Positives = 77/195 (39%), Gaps = 24/195 (12%)
Query: 52 LKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQLETCSVEPVLEFPLTLGRDFCGKI 111
L VL+++ +N D GN+V R+ +PL LG D G +
Sbjct: 29 LPKDGVLIKVAYSGINYKDGLAGKAGGNIV----RE-----------YPLILGIDAAGTV 73
Query: 112 VAKGPRVTDLNIDDVV----YGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLY 167
V+ D V Y + G S+ + P N+S +EA
Sbjct: 74 VS--SNDPRFAEGDEVIATSYELGVSR-DGGLSEYASVPGDWLVPLPQNLSLKEAMVYGT 130
Query: 168 TGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVT-TCSGDAKD 226
G TA ++ GL P VLV GA+GGVG +AV +L +VV T + +A D
Sbjct: 131 AGFTAALSVHRLEQNGLS-PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD 189
Query: 227 LVTSLNPNLVIDYNE 241
+ L + VI +
Sbjct: 190 YLKQLGASEVISRED 204
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 57.9 bits (141), Expect = 1e-09
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 32/159 (20%)
Query: 136 QGSFSKLILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVL 195
QG ++ + V P NI AA +L GLT +S L G K+V ++
Sbjct: 132 QGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLV-RNGCG----PGKKVGIV 186
Query: 196 GASGGVGTMAVQLLKAWDIEVV--TTCSG---DAKDL------VTSLNPNLVIDYNEPEA 244
G GG+G+M + KA E + S DA + T E +
Sbjct: 187 GL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATL---------EEGDW 236
Query: 245 MHSIAGAGPYDVILD--AAGIPLDQINSYLPFLKT-GKF 280
+D+I+ ++ +D N +K G+
Sbjct: 237 GEKYFDT--FDLIVVCASSLTDID-FNIMPKAMKVGGRI 272
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 56.6 bits (137), Expect = 4e-09
Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 25/218 (11%)
Query: 29 AWQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQL 88
A + G ++ L + DV V++ S+N D + G G ++ R
Sbjct: 3 ALILEQQDGKTLASVQH-LEESQLPAGDVTVDVHWSSLNYKDALAITGKGKII----RH- 56
Query: 89 ETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV----YGVIQPHKQGSFSKLIL 144
FP+ G DF G + A + V +GV + H G ++
Sbjct: 57 ----------FPMIPGIDFAGTVHA--SEDPRFHAGQEVLLTGWGVGENH-WGGLAERAR 103
Query: 145 ADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTM 204
+ P+ +S A + G TA + G + P+D V+V GASGGVG+
Sbjct: 104 VKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAG-IRPQDGEVVVTGASGGVGST 162
Query: 205 AVQLLKAWDIEVV-TTCSGDAKDLVTSLNPNLVIDYNE 241
AV LL +V + + SL N ++ +E
Sbjct: 163 AVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDE 200
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 6e-09
Identities = 85/436 (19%), Positives = 143/436 (32%), Gaps = 169/436 (38%)
Query: 41 LQFND----------NVKTPILKSKDVL---VEMKAVSVNPID----------------- 70
L+ ND T ++K+K+++ + + ++ P D
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 71 -VAMLGGYGN--VVLNSLRQL-ET--CSVEPVLEF------PLTLGRDFCGKIVAKGPRV 118
VA+ GG GN LR L +T V +++F L K+ +G
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG--- 212
Query: 119 TDLNIDDVVYGVIQPHKQGSFSKLILADSALVHKKPSNISDEEA-AGVLYT----GLTAW 173
LNI + + + PSN D++ + + G+
Sbjct: 213 --LNILEWL------------------------ENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 174 SALQITA-ALGLVYPRDKRVLVLGASG---GVGT-MAVQLLKAWD------IEVVTT--- 219
+ +TA LG P + R + GA+G G+ T +A+ +W+ + +T
Sbjct: 247 AHYVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 220 ----CSGDAKDLVTSLNPNLVIDYNE-----PEAMHSIAGAGPYDVILDAAGIPLDQINS 270
C TSL P+++ D E P M SI+ + + D +++ NS
Sbjct: 306 IGVRCYEAYP--NTSLPPSILEDSLENNEGVPSPMLSISNL-TQEQVQDY----VNKTNS 358
Query: 271 YLPFLKTGKFSKFVTLRSPFLKNTD----------SL-GLVPGLVKNA-----------F 308
+LP K + S L N SL GL L K F
Sbjct: 359 HLPAGKQVEIS---------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 309 DLLKSNFESGELCKTNTIRWGFFMPI--PY-------AVKEINKFIERGQIK-------- 351
K F + F+P+ P+ A INK + + +
Sbjct: 410 SERKLKFSNR------------FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 352 PVIDSK--YNFCELPT 365
PV D+ + L
Sbjct: 458 PVYDTFDGSDLRVLSG 473
Score = 47.7 bits (113), Expect = 4e-06
Identities = 56/309 (18%), Positives = 90/309 (29%), Gaps = 99/309 (32%)
Query: 23 YSTRTAA---WQISSYGGADELQFNDNVKTPILKSKDVLVEMKAVSVNPIDVAML-GGYG 78
Y T AA W AD F D IL D+ V NP+++ + GG
Sbjct: 1636 YKTSKAAQDVWN-----RADN-HFKDTYGFSIL---DI------VINNPVNLTIHFGGEK 1680
Query: 79 NVVLNSLRQL------ETCS-----VEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVV 127
+R+ ET E + + + + +
Sbjct: 1681 G---KRIRENYSAMIFETIVDGKLKTEKIFK---EINEHST-SYTFRSEK---------- 1723
Query: 128 YGVI------QPHKQGSFSKLILADS-ALVH--KKPSNISDEEA-AG-VL--YTGLTAWS 174
G++ QP + A K I + AG L Y L + +
Sbjct: 1724 -GLLSATQFTQP--------ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 175 -ALQITAALGLVY----------PRDKRVLVLGASGGV--GTMAVQLLKAWDIEVVTTCS 221
+ I + + +V+ PRD+ + G +A + VV
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 222 GDAKDLVTSLNPNLVIDYNEPEAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFS 281
LV +N YN + AG D LD + + L F+K K
Sbjct: 1835 KRTGWLVEIVN------YNVENQQYVAAG--------DLRA--LDTVTNVLNFIKLQKI- 1877
Query: 282 KFVTLRSPF 290
+ L+
Sbjct: 1878 DIIELQKSL 1886
Score = 32.3 bits (73), Expect = 0.31
Identities = 47/264 (17%), Positives = 78/264 (29%), Gaps = 109/264 (41%)
Query: 38 ADELQFNDNVKTPILKSKDVL---VEMKAVSVN-------PIDVAMLGGYGNVVL----N 83
D L+ N+ V +P+L ++ V+ N ++++++ G N+V+
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 84 SLRQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNIDDVVYGVIQ---PHKQ--GS 138
SL L LTL R AK P D Q P +
Sbjct: 385 SLYGLN-----------LTL-RK------AKAPSGLD-----------QSRIPFSERKLK 415
Query: 139 FSKLILADSALVHK---KPSN---ISDEEAAGVLYTGLTAWSALQITAALGLVYP----R 188
FS L ++ H P++ D V + +QI VY
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA----KDIQIP-----VYDTFDGS 466
Query: 189 DKR-------------------------------VLVLGASG--GVGTMAVQLLKAWDIE 215
D R +L G G G+G + + +
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Query: 216 VVTTCSGDAKDLVTSLNPNLVIDY 239
V+ + +L+ N DY
Sbjct: 527 VI---------VAGTLDINPDDDY 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 1e-08
Identities = 56/371 (15%), Positives = 93/371 (25%), Gaps = 107/371 (28%)
Query: 21 LKYSTRTAAWQISSYGGADELQFNDNV---------KTPILKSKDVLVEMKA---VSVNP 68
+K R + Y + +NDN P LK + L+E++ V ++
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID- 156
Query: 69 IDVAMLGGYGNVVLNSLRQLETCSVEPVLE-FP-----LTLGRDFCGKIVAKGPRVTDLN 122
+ G G + L+ C V L L P
Sbjct: 157 ---GV-LGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNS-------PETVLEM 201
Query: 123 IDDVVYGVIQPHKQGSFSKLILADSALVHKKPSNISD--EEAAGVLYTGLTAWSALQITA 180
+ ++Y + S SNI L L +
Sbjct: 202 LQKLLYQIDPNWTSRSDH-------------SSNIKLRIHSIQAELRRLLKSKP------ 242
Query: 181 ALGLVYPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYN 240
Y +LVL V + + + K L+T+ V D
Sbjct: 243 -----YENC--LLVLL---NV----------QNAKAWNAFNLSCKILLTTRFKQ-VTD-- 279
Query: 241 EPEAMHSIAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLV 300
++ A + LD + L K++ R L
Sbjct: 280 ------FLSAATTTHISLDHHSMTLTPDEV------KSLLLKYLDCR------PQDL--- 318
Query: 301 PGLVKNAFDLLKSNFESGELCKTNTIRWGFFMPIPYAVKEINKFIERG--QIKPVIDSKY 358
P V S E + W + ++ IE ++P K
Sbjct: 319 PREVLTTNPRRLSII--AESIRDGLATWDNWK--HVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 359 NFCELPTAFEK 369
F L + F
Sbjct: 375 -FDRL-SVFPP 383
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 52.7 bits (127), Expect = 7e-08
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 24/195 (12%)
Query: 52 LKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQLETCSVEPVLEFPLTLGRDFCGKI 111
L DVLV + SVN D G +V + +P G D G +
Sbjct: 28 LPEGDVLVRVHYSSVNYKDGLASIPDGKIV----KT-----------YPFVPGIDLAGVV 72
Query: 112 VAKGPRVTDLNIDDVV----YGVIQPHKQGSFSKLILADSALVHKKPSNISDEEAAGVLY 167
V+ + D V Y + H G +S+ + P ++ +EA +
Sbjct: 73 VS--SQHPRFREGDEVIATGYEIGVTH-FGGYSEYARLHGEWLVPLPKGLTLKEAMAIGT 129
Query: 168 TGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVT-TCSGDAKD 226
G TA ++ GL P VLV GA+GGVG++AV +L V T D
Sbjct: 130 AGFTAALSIHRLEEHGLT-PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD 188
Query: 227 LVTSLNPNLVIDYNE 241
+ L V+ +
Sbjct: 189 YLRVLGAKEVLARED 203
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 51.9 bits (125), Expect = 2e-07
Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 62/205 (30%)
Query: 47 VKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQLETCSVEPVLEFPLTLGRD 106
+ + +LVE+ + V DV M G +P + P+ LG +
Sbjct: 35 FEISDIPRGSILVEILSAGVCGSDVHMFRG----------------EDPRVPLPIILGHE 78
Query: 107 FCGKIVAKGPRVTDLNIDDV---------------------------------VYGV--- 130
G++V DLN + + VYG+
Sbjct: 79 GAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRG 138
Query: 131 --IQPHKQGSFSK--LILADSALVHKKPSNISDEEAAGVLYTGLTAWSALQITAALGLVY 186
PH +G +S ++ ++ ++ K + A + +G TA+ A +
Sbjct: 139 CSEYPHLRGCYSSHIVLDPETDVL-KVSEKDDLDVLAMAMCSGATAYHAFDEYPE---SF 194
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKA 211
K V++ GA G +G V + ++
Sbjct: 195 A-GKTVVIQGA-GPLGLFGVVIARS 217
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 44.1 bits (105), Expect = 4e-05
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 149 LVHKKPSNISDEEAAGVL-YTGLTAWSALQITAALGLVYPRD-KRVLVLGASGGVGTMAV 206
L+ + P + A G + GLTA+ L + + VLV A+G VG++
Sbjct: 109 LLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCG-----VKGGETVLVSAAAGAVGSVVG 163
Query: 207 QLLKAWDIEVVTTCSGDAK-DLVTSLNPNLVIDYNEPEAMHS-IAGAGP--YDV------ 256
Q+ K +VV D K + + + +Y ++ + A P YD
Sbjct: 164 QIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG 223
Query: 257 --ILDAAGIPLDQINSY 271
L+ L Q+ +
Sbjct: 224 GEFLNTV---LSQMKDF 237
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 43.3 bits (103), Expect = 7e-05
Identities = 53/307 (17%), Positives = 80/307 (26%), Gaps = 94/307 (30%)
Query: 45 DNVKTPILKSKDVLVEMKAVSVNPIDVAMLGGYGNVVLNSLRQLETCSVEPVLEFPLTLG 104
+ P D +V AV+ D+ + + LG
Sbjct: 15 IEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEG----------------AIGERHNMILG 58
Query: 105 RDFCGKIVAKGPRVTDLNIDDVV---------------------------YGVIQPHKQG 137
+ G++V G V D D V K G
Sbjct: 59 HEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDG 118
Query: 138 SFSKLI---LADSALVHKKPSNISDEEA---AGVLYTGLTAWSALQITAALGLVYPRDKR 191
F + AD L P I E A ++ TG A L + D
Sbjct: 119 VFGEFFHVNDADMNLA-HLPKEIPLEAAVMIPDMMTTGFHG-------AELANIKLGDT- 169
Query: 192 VLVLGASGGVGTMAV---QLLKAWDIEVVTTCSGDAK--DLVTSLNPNLVIDYNEPEAMH 246
V V+G G VG M+V L A + D+ +I+Y + +
Sbjct: 170 VCVIGI-GPVGLMSVAGANHLGA---GRIFAVGSRKHCCDIALEYGATDIINYKNGDIVE 225
Query: 247 SI----AGAGPYDVILDAAGIP--LDQ-------------INSY-------LPFLKTGKF 280
I G G D ++ A G Q +N +P + G
Sbjct: 226 QILKATDGKGV-DKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVG 284
Query: 281 SKFVTLR 287
+
Sbjct: 285 MGHKHIH 291
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 40.2 bits (95), Expect = 7e-04
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
Query: 145 ADSALVHKKPSNISDEEAAGVL-YTGLTAWSALQITAALGLVYPRD-KRVLVLGASGGVG 202
A + +++ G+L G+TA++ + P++ + V V ASG VG
Sbjct: 115 MTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCS-----PKEGETVYVSAASGAVG 169
Query: 203 TMAVQLLKAWDIEVVTTCSGDAK-DLVTS-LNPNLVIDY-NEPEAMHSIAGAGP--YDV- 256
+ QL K VV + K DL+ + + +Y E + ++ P D+
Sbjct: 170 QLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIY 229
Query: 257 -------ILDAAGIPLDQINSY 271
+LDA L +N +
Sbjct: 230 FENVGGKMLDAV---LVNMNMH 248
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 39.9 bits (94), Expect = 0.001
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 25/139 (17%)
Query: 150 VHKKPSNISDEEAAGVL-YTGLTAWSALQITAALGLVYPR---DKRVLVLGASGGVGTMA 205
V + + G + GLT+ +Q +K ++V GA+G G++A
Sbjct: 123 VDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGH-----ITAGSNKTMVVSGAAGACGSVA 177
Query: 206 VQLLKAWD-IEVVTTCSGDAK--DLVTSLNPNLVIDYNEPEAMHSIAGAGP--YDV---- 256
Q+ VV C K L + L + I+Y + + + P DV
Sbjct: 178 GQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN 237
Query: 257 ----ILDAAGIPLDQINSY 271
I D + Q+N
Sbjct: 238 VGGNISDTV---ISQMNEN 253
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 36.3 bits (84), Expect = 0.009
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVI---DYNEPEAM- 245
K VL+LGA G + + L T + + N I D A+
Sbjct: 24 KNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALK 83
Query: 246 HSIAGAGPYDVILDAAGIP 264
++ G D++
Sbjct: 84 QAMQGQ---DIVYANLTGE 99
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 36.2 bits (84), Expect = 0.009
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVVTTC---SGDAKDLVTSLNPNLVIDYNEPEAM-H 246
RVLV+GA+G V + LK E + + + + ++ N E H
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEP--VAMVRNEEQGPELRERGASDIVVANLEEDFSH 80
Query: 247 SIAGAGPYDVILDAAGI 263
+ A D ++ AAG
Sbjct: 81 AFASI---DAVVFAAGS 94
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 35.7 bits (82), Expect = 0.020
Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 190 KRVLVLGASGGVGTMAVQLL-KAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHSI 248
+VL+LGA G +G L +D+ + + + + + P L +D + + + +
Sbjct: 17 MKVLILGA-GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATP-LKVDASNFDKLVEV 74
Query: 249 AGAGPYDVILDAA 261
+++++ A
Sbjct: 75 --MKEFELVIGAL 85
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 170
Score = 34.7 bits (79), Expect = 0.024
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 204 MAVQLLKAWDIEVVTTCSG-----DAKDLVTSLNPNLVIDYNEPEAMHSIAGAGPYDVIL 258
V++ KA +I + T S D +N +++ Y + G G YD+I+
Sbjct: 53 RVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMII 112
Query: 259 DAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTD 295
G IN L K K + + +++N
Sbjct: 113 -TIGFKKFYINQVLSAAKNFSNLKTIAIERGYIQNAT 148
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis,
NADH binding specificity, TB structural genomics
consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A
1yl7_A* 1yl6_A*
Length = 245
Score = 34.8 bits (81), Expect = 0.028
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 191 RVLVLGASGGVGTMAVQL-LKAWDIEVVTTC-SGDAKDLVTSLNPNLVIDYNEPEA 244
RV VLGA G VGT V+ A D+ + +GD L+T N +VID+ P+
Sbjct: 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDV 57
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 34.6 bits (80), Expect = 0.033
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVVTTC---SGDAKDLVTSLNPNLVIDYNEPEAM-H 246
++ ++G++G VG ++ L D ++ + ++ PE M
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQI--YAGARKVEQVPQYNNVKAVHFDVDWTPEEMAK 59
Query: 247 SIAGAGPYDVILDAAG 262
+ G D I++ +G
Sbjct: 60 QLHGM---DAIINVSG 72
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 34.6 bits (79), Expect = 0.034
Identities = 16/151 (10%), Positives = 45/151 (29%), Gaps = 11/151 (7%)
Query: 191 RVLVLGASGGVGTMAV-QLLKAWDIEVVTTC--SGDAKDLVTSLNPNLVI---DYNEPEA 244
+ +LGA+G + LL D+ + + + + + P
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGX 66
Query: 245 MHS-IAGAGPYDVILDAAGIPLDQINSYLPFLKTGKFSKFVTLRSPFLKNTDSLGLVPGL 303
+ + A +V+ A + S + L + + + L + L
Sbjct: 67 LEQAVTNA---EVVFVGAMESGSDMASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWT 123
Query: 304 VKNAF-DLLKSNFESGELCKTNTIRWGFFMP 333
N ++ ++ + + + + +
Sbjct: 124 FDNLPISYVQGERQARNVLRESNLNYTILRL 154
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 34.5 bits (80), Expect = 0.040
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 191 RVLVLGASGGVGTMAVQLLKA----------WDIEVVTTCSGDAKDLVTSLNPNLVIDYN 240
+V VLGA+GG+G LLK +DI VT G A DL + ++
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT--PGVAVDLSHIPTAVKIKGFS 59
Query: 241 EPEAMHSIAGAGPYDVILDAAGIP 264
+A ++ GA DV+L +AG+
Sbjct: 60 GEDATPALEGA---DVVLISAGVA 80
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 33.8 bits (78), Expect = 0.048
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHS-I 248
++L++GASG +G+ + L+ EV+T + D + +D +++
Sbjct: 4 MKILLIGASGTLGSAVKERLEK-KAEVITA-GRHSGD--------VTVDITNIDSIKKMY 53
Query: 249 AGAGPYDVILDAAGI----PLDQI 268
G D I+ A G PL ++
Sbjct: 54 EQVGKVDAIVSATGSATFSPLTEL 77
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 32.5 bits (74), Expect = 0.058
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNL---VIDYNEPEAMH 246
+ V+GA G +G M LLK VT D L + +D + +
Sbjct: 6 WNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLA 64
Query: 247 S-------IAGAGPYDV---ILDAA 261
+ A P+ + I AA
Sbjct: 65 KALGGFDAVISAAPFFLTPIIAKAA 89
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 33.3 bits (76), Expect = 0.091
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTC----SGDAKDLVTSLNPNLVIDYNEPEAM 245
VLV GASG G + + LK + V + + + + + D + +++
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADV-FIGDITDADSI 63
Query: 246 -HSIAGAGPYDVILDAAG 262
+ G D ++
Sbjct: 64 NPAFQGI---DALVILTS 78
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 33.4 bits (75), Expect = 0.12
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTC--SGDAKDLVTSLNPN--LVIDYNEPEAM 245
K VL+LG+ G V + +L I+V C AK L + + + +D N+ A+
Sbjct: 4 KSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAAL 62
Query: 246 HSIAGAGPYDVILDA 260
+ +D+++
Sbjct: 63 DAE--VAKHDLVISL 75
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 32.7 bits (75), Expect = 0.12
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTC---SGDAKDLVTSLNPNLVI-DYNEPEAM 245
K++ + GA+G G + EV T ++V+ D + +
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEV--TVLVRDSSRLPSEGPRPAHVVVGDVLQAADV 61
Query: 246 -HSIAGAGPYDVILDAAGIP 264
++AG D ++ G
Sbjct: 62 DKTVAGQ---DAVIVLLGTR 78
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 33.0 bits (75), Expect = 0.13
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 190 KRVLVLGASGGVGTMAVQ-LLKA-WDIEVVTTCSGDAKDLVTSLNPNLVI----DYNEPE 243
++L+ G +G +G V+ LK V T + L+ I + +E E
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHE 71
Query: 244 AMHS-IAGAGPYDVILDAAGIP--LDQIN 269
+ + DV++ A P LDQ
Sbjct: 72 KLVELMKK---VDVVISALAFPQILDQFK 97
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 33.0 bits (76), Expect = 0.14
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 188 RDKRVLVLGASGGVGTMAVQLLKA---------WDIEVVTTCSGDAKDLVTSLNPNLVID 238
+V +LGA+GG+G L+K +D+ V G D+ +V
Sbjct: 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDV--VNAP-GVTADISHMDTGAVVRG 63
Query: 239 YNEPEAMHS-IAGAGPYDVILDAAGIP 264
+ + + + + G D+I+ AG+P
Sbjct: 64 FLGQQQLEAALTGM---DLIIVPAGVP 87
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 32.4 bits (75), Expect = 0.16
Identities = 14/83 (16%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 189 DKRVLVLGASGGVG-TMAVQLLKA-WDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAM- 245
+++ LV G S G+G +A L+ + + + + +A + ++ ++ ++P+ +
Sbjct: 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLV 61
Query: 246 -HSIAGAGPYDVILDAAGIPLDQ 267
++ G V++ AA + + +
Sbjct: 62 KRALEALGGLHVLVHAAAVNVRK 84
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 32.6 bits (75), Expect = 0.16
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHSIA 249
+RVLV GA+G +G + + + V A+ + + + A+H I
Sbjct: 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQV------NLLDSNAVHHII 56
Query: 250 GAGPYDVILDAA 261
VI+ A
Sbjct: 57 HDFQPHVIVHCA 68
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD PG4; 2.27A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.3
Length = 228
Score = 32.2 bits (74), Expect = 0.19
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHSIA 249
+ ++G SG +G ++ E+V + + + +P++VID++ PEA+
Sbjct: 14 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEELD--SPDVVIDFSSPEALPKTV 70
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 32.7 bits (75), Expect = 0.19
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLV-IDYNEPEAMHSI 248
KR+L+LG +G + K I + +A +L + +D + P+ +
Sbjct: 8 KRLLILG-AGRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQK 66
Query: 249 A 249
Sbjct: 67 V 67
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 32.0 bits (73), Expect = 0.20
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVI---DYNEPEAMH 246
K+++++GASG VG+ + EV + + N +L + D + + +
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAV-VRHPEKI-KIENEHLKVKKADVSSLDEVC 62
Query: 247 S-IAGAGPYDVILDAAGIPLDQINSYLPFLK 276
GA D ++ A + + Y +K
Sbjct: 63 EVCKGA---DAVISAFNPGWNNPDIYDETIK 90
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 32.5 bits (73), Expect = 0.21
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 190 KRVLVLGASGGVGTMAVQLL---KAWDIEVVTTCSGDAKDLVTSLNPN-LVIDYNEPEAM 245
K VL+LG+ G V + L ++ V +A+ L + +D + A+
Sbjct: 24 KNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSAL 82
Query: 246 HSIAGAGPYDVILDA 260
+ DV++
Sbjct: 83 DKV--LADNDVVISL 95
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function,
NPPSFA, national PROJ protein structural and functional
analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Length = 121
Score = 31.0 bits (70), Expect = 0.21
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 198 SGGVGTMAVQLLKAWDIEVVTTCSGDAKDLV 228
+ G+G A++ + I VVT G D++
Sbjct: 69 TYGIGRRAIEYFNSLGISVVTGVYGRISDVI 99
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics,
joint center for structu genomics, JCSG, protein
structure initiative; NMR {Thermotoga maritima} SCOP:
c.55.5.1
Length = 116
Score = 30.9 bits (70), Expect = 0.21
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 198 SGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSL 231
+ VG A + LKA ++V G ++ + +
Sbjct: 68 ASNVGRNAFETLKAAGVKVYRFEGGTVQEAIDAF 101
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 31.9 bits (72), Expect = 0.34
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 190 KRVLVLGASGGVGTMAVQ-LLKA-WDIEVVT---TCSGDAKDLVTSLNPNLVI----DYN 240
RVL+ GA+G +G L A ++ S + +L I N
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLIN 70
Query: 241 EPEAMHSIAGAGPYDVILDAAGIP--LDQIN 269
E EAM I D+++ G LDQI
Sbjct: 71 EQEAMEKILKEHEIDIVVSTVGGESILDQIA 101
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 31.7 bits (73), Expect = 0.37
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDA--------KDLVTSLNPNLVI 237
++L+ GA+G +G + LK ++EV+ T D PN+VI
Sbjct: 14 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVI 68
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 31.5 bits (72), Expect = 0.39
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVI---DYNEPEAM 245
+++ GA+G +GT A I+ + + + + + DY E+M
Sbjct: 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESM 59
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 31.3 bits (72), Expect = 0.42
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDA--------KDLVTSLNPNLVI 237
+RV++ GA+G +G + L + ++ + +V + P+++I
Sbjct: 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIII 61
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet,
strand order 321456; NMR
{Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Length = 124
Score = 30.2 bits (68), Expect = 0.49
Identities = 5/49 (10%), Positives = 16/49 (32%)
Query: 198 SGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMH 246
+ G A ++L I++ ++ + + + P +
Sbjct: 71 ASSPGPNAFEVLNELGIKIYRATGTSVEENLKLFTEGNLEEIRSPGSGR 119
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
{Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Length = 457
Score = 31.4 bits (72), Expect = 0.52
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 176 LQITAALGLVYPRDKRVLVLGASGGVGTMAVQLLKAWDIEV 216
L + A PR +V ++ +GG G + L +++
Sbjct: 280 LSMARAFSQPLPRGNKVAIMTNAGGPGVLTADELDKRGLKL 320
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 31.2 bits (71), Expect = 0.53
Identities = 6/47 (12%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 166 LYTGLTAWSALQITAALGLVYPRDKRVLVLGASGGVGTMAVQLLKAW 212
+ + A A I + +VL + G + + +
Sbjct: 143 AMSPMMANPAQLIAQLVNENKIEPLKVLDIS--ASHGLFGIAVAQHN 187
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY,
structural genomics, structural genomics consortium,
SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A*
3c6m_A*
Length = 364
Score = 31.0 bits (70), Expect = 0.55
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 21/103 (20%)
Query: 182 LGLVYPRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTC-----------------SGDA 224
G K VL+LG GG G + +++K ++VT GD
Sbjct: 182 SGKEDYTGKDVLILG--GGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 238
Query: 225 KDLVTSLNPNLVIDYNEPEAMHSIAGAGPYDVIL-DAAGIPLD 266
D + ++I+ P +D ++ D +P+
Sbjct: 239 LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPIS 281
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 31.0 bits (71), Expect = 0.56
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 190 KRVLVLGASGGVG-TMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAM--H 246
+ VLV G + G+G +A A D +T SG+ + ++ + + D + E
Sbjct: 22 RSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFLAVKCD-ITDTEQVEQAYKE 80
Query: 247 SIAGAGPYDVILDAAGI 263
GP +V++ AG+
Sbjct: 81 IEETHGPVEVLIANAGV 97
>1w25_A Stalked-cell differentiation controlling protein; two-component
system, ggdef domain, cyclic dinucleotide, cyclic-digmp;
HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1
c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Length = 459
Score = 30.9 bits (70), Expect = 0.63
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVVTTCSG-DAKDLVTSLNPNLVI-DYNEPEA 244
R+LV+ + L A EV T G A + P++++ D P
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGM 58
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 31.0 bits (71), Expect = 0.65
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 28/118 (23%)
Query: 187 PRDKRVLVLGASGGVGTMAVQLLK--AWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEA 244
KR+LV+GA GG + LL A I++ A+ LV + ++ EA
Sbjct: 139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEA 198
Query: 245 MHSIAGAGPYDVI-----------LDAAGIPLDQINSYL------------PFLKTGK 279
+A D+I ++ + L+++ + +LK K
Sbjct: 199 ETRLAEY---DIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETKWLKEAK 253
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 30.7 bits (70), Expect = 0.69
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVV 217
R+LV GA+GGVG+ L EV
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVR 30
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 30.6 bits (70), Expect = 0.81
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMH 246
+DK +++ GA G +A +L K +I + A+ L + L + E
Sbjct: 126 VKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS 185
Query: 247 SIAGAGP-YDVILDA 260
+ D+I++A
Sbjct: 186 GLDVDLDGVDIIINA 200
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 30.3 bits (68), Expect = 0.83
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 191 RVLVLGASGGVGTMAVQLLKA 211
++ ++GA+G G+ ++ K
Sbjct: 2 KIGIIGATGRAGSRILEEAKN 22
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 30.4 bits (69), Expect = 0.86
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 190 KRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTS--LNPN---LVIDYNEPEA 244
KR+LV GA+G +G + + L + DL PN + D + A
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEILRLA------DLSPLDPAGPNEECVQCDLADANA 57
Query: 245 MHSIAGAGPYDVILDAAGIPLD 266
+++ AG D I+ GI ++
Sbjct: 58 VNA-MVAGC-DGIVHLGGISVE 77
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 30.0 bits (67), Expect = 0.97
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHSIAG 250
++ VLGA+G G+ V + E V D + L + EP +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHE-VLAVVRDPQKAADRLGATVATLVKEPLVLTEADL 60
Query: 251 AGPYDVILDAAGIPLD 266
D ++DA +P
Sbjct: 61 DSV-DAVVDALSVPWG 75
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 30.2 bits (69), Expect = 0.98
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 189 DKRVLVLGASGGVG-TMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAM-- 245
+ VLV G + G+G +A +L VT A + + + V D + +
Sbjct: 15 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVD-VTDSDAVDRAFT 73
Query: 246 HSIAGAGPYDVILDAAGI 263
GP +V++ AG+
Sbjct: 74 AVEEHQGPVEVLVSNAGL 91
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase/dihydropteroate...; folate, TIM
barrel, synthase, HPPK, DHPS; 2.20A {Francisella
tularensis subsp} PDB: 3mcn_A* 3mco_A*
Length = 442
Score = 30.0 bits (68), Expect = 1.2
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 22/75 (29%)
Query: 81 VLNSLRQLETCSVEPVLEFPLTLGRDFCGKIVAKGPRVTDLNI---DDVVYG---VIQPH 134
+L L+ +E L +GRD A PRV DL+I +D++ + PH
Sbjct: 95 LLVLLKDIE-----------LKIGRDL--NAPAWSPRVIDLDILAAEDLILETDKLTIPH 141
Query: 135 K---QGSFSKLILAD 146
K SF+ L +
Sbjct: 142 KELINRSFALAPLLE 156
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 29.4 bits (67), Expect = 1.5
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 189 DKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGD--AKDLVTSLNPN---LVIDYNEPE 243
K L+ GAS G+G+ +LL +V+ + S + K L +L N V + E
Sbjct: 14 GKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKE 73
Query: 244 AMHS-IAGAGPYDVILDAAGIPLDQI 268
+ I+ D+++ AGI D +
Sbjct: 74 ECSNLISKTSNLDILVCNAGITSDTL 99
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 29.6 bits (67), Expect = 1.6
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 189 DKRVLVLGASGGVGTMAVQLLKA--WDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMH 246
+RVLV G G +G+ VQ +A W + + + + + + + +
Sbjct: 7 ARRVLVYGGRGALGSRCVQAFRARNWWV-ASIDVVENEEASASVIVKMTDSFTEQADQVT 65
Query: 247 ----SIAGAGPYDVILDAAGI 263
+ G D IL AG
Sbjct: 66 AEVGKLLGDQKVDAILCVAGG 86
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 29.7 bits (66), Expect = 1.7
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 190 KRVLVLGASGGVGTMAVQLLKA 211
L++G +G +G ++L
Sbjct: 2 SVALIVGVTGIIGNSLAEILPL 23
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 29.5 bits (67), Expect = 1.8
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 191 RVLVLGASGGVGTMAVQLLKA---------WDIEVVTTCSGDAKDLVTSLNPNLVIDYNE 241
+V VLGASGG+G LLK +DI G A DL V Y
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP---GVAADLSHIETRATVKGYLG 58
Query: 242 PEAMHS-IAGAGPYDVILDAAGIP 264
PE + + G DV++ AG+P
Sbjct: 59 PEQLPDCLKGC---DVVVIPAGVP 79
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 29.6 bits (67), Expect = 1.8
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 192 VLVLGASGGVGTMAVQLL----KAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAM 245
+ + GA+G +G ++ L A I + A+ L DY + A+
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAAL 59
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 29.5 bits (66), Expect = 1.8
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 188 RDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDL 227
+ K+ +VL +G VG + LL A + V C
Sbjct: 118 KGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKA 156
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 29.5 bits (67), Expect = 1.8
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 15/86 (17%)
Query: 188 RDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMHS 247
+K+VLVLG G A +LL V D K + N E +
Sbjct: 8 ENKKVLVLGL-ARSGEAAARLLAKLGAIVTVN---DGKP----FDENPTAQSLLEEGIKV 59
Query: 248 IAGAGPYDVILDAA-------GIPLD 266
+ G+ P +++ + GIP +
Sbjct: 60 VCGSHPLELLDEDFCYMIKNPGIPYN 85
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger,
transferase, viral protein; HET: SAM; 2.00A {Sars
coronavirus}
Length = 344
Score = 29.3 bits (65), Expect = 1.8
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 184 LVYPRDKRVLVLGASGGVGTM-AVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYN 240
L P + RV+ GA G +L+ W D D V+ + L+ D
Sbjct: 105 LAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCA 162
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 29.3 bits (66), Expect = 2.0
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 19/92 (20%)
Query: 190 KRVLVLGASGGVG-TMAVQLLK--AWDIEVVTTC-----SGDAKDLVTSLNPNLVI---D 238
+L+ G + G+G + LL + TTC + + +DL + + N+ I D
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-HSNIHILEID 80
Query: 239 YNEPEAMHSIA-------GAGPYDVILDAAGI 263
+A + +V+ + AGI
Sbjct: 81 LRNFDAYDKLVADIEGVTKDQGLNVLFNNAGI 112
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold,
iron-molybdenum cofactor, ST genomics; HET: MSE PG4;
1.70A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 2kla_A
Length = 105
Score = 28.1 bits (63), Expect = 2.0
Identities = 3/31 (9%), Positives = 7/31 (22%), Gaps = 1/31 (3%)
Query: 198 SGGVGTMAVQLLKAWDIEVVTTCSGDAKDLV 228
+ + IE+ D +
Sbjct: 62 CKNISEENYKKFSK-KIEIYHAEGDDVDKNI 91
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 29.6 bits (66), Expect = 2.1
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSG 222
++ + V SG ++A+ +L+ + +
Sbjct: 423 NKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNE 458
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis,
transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Length = 187
Score = 28.8 bits (64), Expect = 2.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 84 SLRQLETCSVEPVLEFP--LTLGRDFCGKIVAKGP-RVTDLNIDDVV 127
S+ L + E T+GR G I +G +T+LN+DD+V
Sbjct: 53 SMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIV 99
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 29.2 bits (66), Expect = 2.2
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 189 DKRVLVLGASGGVGTMAVQLLKA--WDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAMH 246
K +LVLG SG +G V+ K+ W+ + D ++ E +++
Sbjct: 22 SKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIK---DSGEEEIKSVI 78
Query: 247 SIAGA--GPYDVILDAAGI 263
+ D + AAG
Sbjct: 79 EKINSKSIKVDTFVCAAGG 97
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 28.8 bits (65), Expect = 2.4
Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 190 KRVLVLGASGGVGT-MAVQLLKAWDIEVVTTCS---GDAKDLVTSLNPNLVI---DYNEP 242
V+V GA+ G+G + QL+K +I + + A +L + + + +
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCD 63
Query: 243 EAMHSIA-------GAGPYDVILDAAGI 263
+++ + G+ ++++ AG+
Sbjct: 64 KSLDTFVSKVGEIVGSDGLSLLINNAGV 91
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center
for eukaryotic structural genomics, CESG, structural
genomics; 2.79A {Cyanidioschyzon merolae}
Length = 281
Score = 29.0 bits (64), Expect = 2.4
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 8/89 (8%)
Query: 168 TGLTAWSALQITAALGLVYP---RDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDA 224
WS + A P K V LGA G+ ++ L A V
Sbjct: 56 WTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQ---VVATDYPD 112
Query: 225 KDLVTSLNPNLVIDYNEPEAMHSIAGAGP 253
+++ SL N I + + S
Sbjct: 113 PEILNSLESN--IREHTANSCSSETVKRA 139
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics,
PSI, protein structure initiative; 1.80A {Pyrococcus
furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Length = 281
Score = 28.8 bits (65), Expect = 2.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTC 220
P+ KRVLV+G GG G ++L+ D++ V
Sbjct: 74 PKPKRVLVIG--GGDGGTVREVLQ-HDVDEVIMV 104
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis,
precursor, protein transport; 1.90A {Homo sapiens} PDB:
2q5y_A 3tkn_C
Length = 155
Score = 28.2 bits (63), Expect = 2.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 84 SLRQLETCSVEPVLEFP--LTLGRDFCGKIVAKGP-RVTDLNIDDVVY 128
S+ L + E T+GR G I +G +T+LN+DD+V+
Sbjct: 14 SMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVH 61
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 28.9 bits (65), Expect = 2.6
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 190 KRVLVLGASGGVGTMAVQLL---KAWDIEVVT--TCSGDAKDLVTSLNPNLVI-DYNEPE 243
K V+V G +G G + L + + VVT AK+L +V D ++
Sbjct: 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKEL-RLQGAEVVQGDQDDQV 64
Query: 244 AMHSIAGAGPYDVIL 258
M A G Y +
Sbjct: 65 IMEL-ALNGAYATFI 78
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 28.9 bits (65), Expect = 2.8
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 159 DEEAAGVLYTGLTAWSALQITAALGLV-YPRDKRVLVLGASGGVGTMAVQLLKAW 212
D A + S + L + R + V+ L GG GT Q+L+
Sbjct: 149 DTRARDAFNDAMVRLSQPMVDVVSELGVFARARTVIDLA--GGHGTYLAQVLRRH 201
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 28.3 bits (64), Expect = 3.1
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAKDLVTSLNPN-LVIDYNEPEAMHS-I 248
RVL+ GA+GG+G + LK D+ + +G +L + L D + + +
Sbjct: 2 RVLITGATGGLGGAFARALKGHDLLLSGRRAGALAELAREVGARALPADLADELEAKALL 61
Query: 249 AGAGPYDVILDAAGI 263
AGP D+++ A G
Sbjct: 62 EEAGPLDLLVHAVGK 76
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 28.7 bits (65), Expect = 3.2
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 37/119 (31%)
Query: 187 PRDKRVLVLGASGGVGT---MAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPE 243
++ +VLG+ GG ++ A DI VVT ++ VI Y+E
Sbjct: 120 IKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK---VISYDELS 175
Query: 244 AMHSIAGAGPYDVI-----------LDAAGIPLDQINSYL------------PFLKTGK 279
+ DVI + + + + + FLK +
Sbjct: 176 NL-------KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVETLFLKYAR 227
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 28.7 bits (65), Expect = 3.5
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 187 PRDKRVLVLGASGGVGT-MAVQLLKA 211
+ V+ +GA GGVG +A L+
Sbjct: 125 AKLDSVVQVGA-GGVGNAVAYALVTH 149
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 28.7 bits (65), Expect = 3.5
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 187 PRDKRVLVLGASGGVGT-MAVQLLK--AWDIEVV--TTCSGD-AKDLVTSLNPN 234
R K +++LGA GG T + Q +I++ + A +N N
Sbjct: 146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNEN 198
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp,
NSR437I, NESG, structural genomics, PSI-2, protein
structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Length = 106
Score = 27.2 bits (61), Expect = 3.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKA 211
+ + + V GA + AV LL++
Sbjct: 50 EKSRDIYVYGAGDEQTSQAVNLLRS 74
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 28.4 bits (63), Expect = 3.6
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 21/93 (22%)
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDAK---------DLVTSLNPNLVI 237
R+ LG GG TMA + T DA+ D+ + + +
Sbjct: 88 ASKLRITHLG--GGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRV 145
Query: 238 DYNEPEAMHSIAGA--GPYDVIL----DAAGIP 264
D +A DVI+ A P
Sbjct: 146 D----DARMVAESFTPASRDVIIRDVFAGAITP 174
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 28.4 bits (64), Expect = 3.6
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 192 VLVLGASGGVGTMAVQLL--KAWDIEVVTTCSGDAKDLVTSLNPNLV----IDYNEPEAM 245
+ V GA+G +G + +Q L K +++ K ++L V DYN+PE++
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK--ASTLADQGVEVRHGDYNQPESL 60
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 28.6 bits (63), Expect = 3.8
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 177 QI--TAALGLVYPRDKRVLVLGASGGVGTMAVQLLKAWD 213
QI T A G+ K+VLV+GAS G G +A ++ A+
Sbjct: 47 QIAATRARGVRNDGPKKVLVIGASSGYG-LASRITAAFG 84
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 28.4 bits (64), Expect = 4.2
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGD---AKDLVTSLNPNLVIDYNEPE 243
+++L+LG SG +G + +EVV A + + + V + + +
Sbjct: 17 DSAQKILLLG-SGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVA---HRSYVGNMMDKD 72
Query: 244 AMHSIAGAGPYDVI 257
+ S+ D I
Sbjct: 73 FLWSVVEREKPDAI 86
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 28.3 bits (64), Expect = 4.2
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 25/102 (24%)
Query: 191 RVLVLGASGGVGT-MAVQLLKAWDIEVVTTCSGDA----------KDLVTSLNPNLVID- 238
+L+ G +G VG + L ++ + S + + V L P+++++
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNA 61
Query: 239 --Y-------NEPEAMHSIAGAGPYDVILDAA---GIPLDQI 268
+ +EPE + + I AA G +
Sbjct: 62 AAHTAVDKAESEPELAQLLNATSV-EAIAKAANETGAWVVHY 102
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 28.1 bits (63), Expect = 4.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 190 KRVLVLGASGGVGTMAVQLL 209
KRVL+ GA+G G + +
Sbjct: 6 KRVLLAGATGLTGEHLLDRI 25
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural
genomics, protein structure initiative, northeast
structural genomics consortium; 2.26A {Nostoc SP} PDB:
2kl3_A
Length = 141
Score = 27.4 bits (61), Expect = 4.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKA 211
+ + + V GA + AV LL++
Sbjct: 54 EKSRDIYVYGAGDEQTSQAVNLLRS 78
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 28.1 bits (63), Expect = 4.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 190 KRVLVLGA-SGGVGTMAVQLLKA---WDIEVV 217
K V+V+G GG+ A L I ++
Sbjct: 3 KHVVVIGGGVGGI-ATAYNLRNLMPDLKITLI 33
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 28.0 bits (63), Expect = 4.8
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 187 PRDKRVLVLGASGGVGT-MAVQLLKA 211
K++ + GA GG T + +Q
Sbjct: 152 IIGKKMTICGA-GGAATAICIQAALD 176
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 28.4 bits (63), Expect = 4.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSG 222
PRD V V +GG +A LL+A + V G
Sbjct: 425 PRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVG 460
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 28.0 bits (63), Expect = 4.9
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 188 RDKRVLVLGASGGVG-TMAVQLLKA 211
+ K+V+V GAS G+G MA L K
Sbjct: 27 QGKKVIVTGASKGIGREMAYHLAKM 51
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 27.0 bits (60), Expect = 5.1
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 88 LETCSVEPVLEFPLTLGRDFCGKIVAKGPRV 118
++ SV ++ C ++ ++ R
Sbjct: 52 IKGYSVRMAPHLRRDSKKESCFELTSQDRRT 82
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, ,
structural genomics, protein structure initiative; 2.60A
{Helicobacter pylori}
Length = 475
Score = 28.3 bits (64), Expect = 5.1
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 175 ALQITAALGLVYPRDKRVLVL---GASGGVG-TMAVQLLKAWDIEVV---TTCSGDAKD- 226
A+ + A+ +V++L G +GG G +A +L+ + + V T S +
Sbjct: 32 AMALERAVLQNASLGAKVIILCGSGDNGGDGYALARRLVGRFRVLVFEMKLTKSPMCQLQ 91
Query: 227 LVTSLNPNLVIDYNEPEAMHSIAGAGPYDVILDA 260
+ +VI E A++ DV++D
Sbjct: 92 KERAKKAGVVIKTYEENALNQNL---ECDVLIDC 122
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper
sulphide cluster, alpha and beta protein, biosynthetic
protein; 2.00A {Desulfovibrio gigas}
Length = 120
Score = 27.1 bits (60), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 198 SGGVGTMAVQLLKAWDIEVVTTCSGD 223
+G VG A Q L+A I+V G
Sbjct: 73 TGYVGPKAFQALQAAGIKVGQDLEGL 98
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 27.8 bits (63), Expect = 5.5
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 189 DKRVLVLGASGGVG-TMAVQLLKA-WDIEVVTTCSGDAKDLVTSLNPN---LVIDYNEPE 243
+RVLV GA G+G L + V + + D + P + +D + E
Sbjct: 7 GRRVLVTGAGKGIGRGTVQALHATGARV-VAVSRTQADLDSLVRECPGIEPVCVDLGDWE 65
Query: 244 AMHS-IAGAGPYDVILDAAGIPLDQINSYLPFLKT 277
A + GP D++++ A + L Q PFL+
Sbjct: 66 ATERALGSVGPVDLLVNNAAVALLQ-----PFLEV 95
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 28.1 bits (63), Expect = 5.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVV 217
V + G+ G VG L+ EV+
Sbjct: 149 TVAITGSRGLVGRALTAQLQTGGHEVI 175
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 28.0 bits (63), Expect = 5.7
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 158 SDEEAAGVLYTGLTAWSALQITAALGLVYP-RDKRVLVLGASGGVGTMAVQLLKAW 212
+A + A + + + R + + +G GG G + +L+A
Sbjct: 138 RCPDAGRRFLLAMKASNL--AFHEIPRLLDFRGRSFVDVG--GGSGELTKAILQAE 189
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 27.9 bits (62), Expect = 5.9
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 190 KRVLVLGASGGVGTMAV-QLLKAWDIEVVTTCSGDAKDLVTSLNPNL---VIDYNEPEAM 245
K V +LGASG G + + ++L+ VT N+ V+D+ + +
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDY 78
Query: 246 HSIAGAGPYDVILDAAGIPLDQINS 270
S +DV G + +
Sbjct: 79 ASA--FQGHDVGFCCLGTTRGKAGA 101
>3eq2_A Probable two-component response regulator; adaptor sigmas,
signaling protein; 3.40A {Pseudomonas aeruginosa} PDB:
3f7a_A
Length = 394
Score = 27.9 bits (62), Expect = 6.2
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 187 PRDKRVLVLGASGGVGTMAVQLLKAWDIEVVTTCSG-DAKDLVTSLNPNLVI-DYNEPE 243
+L++ V L+ + +V+ +G + S P+LVI D P+
Sbjct: 3 KVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDLRMPQ 61
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 27.7 bits (62), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 190 KRVLVLGASGGVGTMAVQLL 209
K+ VLGA+G VG + LL
Sbjct: 20 KKAGVLGATGSVGQRFILLL 39
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 27.7 bits (62), Expect = 6.5
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 189 DKRVLVLGASGGVGTMAVQLLKA--WDIEVVTTCSGDAKDLVTSLNPNLVIDYNEPEAM- 245
+V+V G G +G+ ++ K + + + S + + L + +++
Sbjct: 3 SGKVIVYGGKGALGSAILEFFKKNGYTV-LNIDLSANDQADSNILVDGNKNWTEQEQSIL 61
Query: 246 ---HSIAGAGPYDVILDAAGI 263
S D + AG
Sbjct: 62 EQTASSLQGSQVDGVFCVAGG 82
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 27.6 bits (62), Expect = 6.7
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 191 RVLVLGASGGVGTM-AVQLLKAWDIEVVTTCSGDAKDL------VTSLNPNLVIDYNEPE 243
R+ ++GA G +G L ++ +V D + + V S+N + + +
Sbjct: 4 RIAIVGA-GALGLYYGALLQRS-GEDVHFLLRRDYEAIAGNGLKVFSINGDFTLP--HVK 59
Query: 244 AMHSIAGAGPYDVIL 258
+ GP D++L
Sbjct: 60 GYRAPEEIGPMDLVL 74
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 27.5 bits (62), Expect = 6.9
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 182 LGLVYPRDKRVLVLGASGGVG-TMAVQLLK--AWDIEVVTTCSGDAKDLVTSLNPNLVID 238
LG+ RDK VLVL AS G+G +A L + A VT C+ + + L S + +V D
Sbjct: 15 LGI---RDKGVLVLAASRGIGRAVADVLSQEGA----EVTICARNEELLKRSGHRYVVCD 67
Query: 239 YNEPEAMHSIAGAGPYDVILDAAGIPLD 266
+ + D+++ AG P
Sbjct: 68 LRKDLDLL-FEKVKEVDILVLNAGGPKA 94
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 27.5 bits (62), Expect = 7.0
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 186 YPRDKRVLVLGASGGVGTMAVQLLKA 211
++ +V+V G+ G + +
Sbjct: 116 LNKNAKVIVHGSGGMAKAVVAAFKNS 141
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 27.5 bits (61), Expect = 7.2
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 189 DKRVLVLGASGGVGTMAVQLLKA--WDIEVVT--TCSGDAKDLVTSLNPNLVI--DYNEP 242
K + V+GA+G G +++ A + A++L N L N
Sbjct: 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNV 64
Query: 243 EAMHS-IAGA 251
M + GA
Sbjct: 65 PLMDTLFEGA 74
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 27.1 bits (61), Expect = 7.7
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 189 DKRVLVLGASGGVGT-MAVQLLKAWDIEVVTTCSGDAKDLVTSLNPN-LVIDYNEPEAMH 246
K +V GA+GG+G + L + + + L + D +
Sbjct: 5 KKIAVVTGATGGMGIEIVKDLSRDHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEE 64
Query: 247 SIAGA----GPYDVILDAAGI 263
D ++ AA +
Sbjct: 65 GGVDKLKNLDHVDTLVHAAAV 85
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 27.3 bits (61), Expect = 8.2
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 192 VLVLGASGGVGT-MAVQLLKAWDIEVVTTCSGDAKDLVTSLNPNL---VIDYNEPEAMHS 247
+LV G+SG +GT + L + + + V A D+V + +D + + +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVI-----ASDIVQRDTGGIKFITLDVSNRDEIDR 56
Query: 248 IAGAGPYDVILDAAGI 263
D I AGI
Sbjct: 57 AVEKYSIDAIFHLAGI 72
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 27.2 bits (61), Expect = 8.2
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 14/61 (22%)
Query: 191 RVLVLGASGGVGTMAVQLLKAWDIEVVTTCSGDA--------------KDLVTSLNPNLV 236
R L+ GASG +G +LL + S + +D + P+++
Sbjct: 2 RTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVI 61
Query: 237 I 237
I
Sbjct: 62 I 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.407
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,878,516
Number of extensions: 363463
Number of successful extensions: 1465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1309
Number of HSP's successfully gapped: 225
Length of query: 383
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 288
Effective length of database: 4,049,298
Effective search space: 1166197824
Effective search space used: 1166197824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)