BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9950
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RGN|B Chain B, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|E Chain E, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 354
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 185/316 (58%), Gaps = 11/316 (3%)
Query: 292 QTLKTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEK 351
Q K + ++++ E+++TE+ YV L ++ Y+ + + +P++LRG+ ++FGNI++
Sbjct: 5 QKKKALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQ 64
Query: 352 IYEFHSQHFLGELEQCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYGSSFFK 411
IYE+H +FL EL++C P + Q F+ HE + ++Y +Y +NKPKS+ +++E+G S+F+
Sbjct: 65 IYEWHRDYFLQELQRCLKDPDWLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGDSYFE 124
Query: 412 AKQLELADRMDLASYLLKPVQRMGKYALLLQQLMKA---SRQDVKDIKEAESMVRFQLRH 468
+ +L R+ L L+KPVQR+ KY LLL+ +K + D D+++A ++ F +
Sbjct: 125 ELRQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKR 184
Query: 469 GNDLLAMDSLRECDVNLKEQGRLLRQNEFIVSQGKGKKCL------RHVFLFEELILFSK 522
ND++ + LR + L QG+LL Q+ F V++ + L R VFLFE++I+FS+
Sbjct: 185 CNDMMTLGRLRGFEGKLTAQGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSE 244
Query: 523 ARRFPDRKNLD-LYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPN-ETFTLQSMSED 580
A R Y+YK+S+K+S +G+ + +F + R + + + LQ+
Sbjct: 245 ALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPA 304
Query: 581 IKQAWTDELSNLLWKQ 596
I QAW ++ +L Q
Sbjct: 305 ISQAWIKHVAQILESQ 320
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 179/315 (56%), Gaps = 23/315 (7%)
Query: 303 IMREMIQTERDYVKSLEYVILNYIPE----LTREDIPQALRGQRNVIFGNIEKIYEFHSQ 358
+M E++ TER YV+ L V+ Y E L I L+ ++N++FGN+E+IY FH++
Sbjct: 15 VMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNR 74
Query: 359 HFLGELEQCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYGSS-FFKAKQLEL 417
FL ELE C + P VG+CFL +F +Y Y +NKP+S++L + FF+ Q +L
Sbjct: 75 IFLRELESCIDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSDCPFFQECQKKL 134
Query: 418 ADRMDLASYLLKPVQRMGKYALLLQQLMKASR--QDVKDIKEAESMVRFQLRHGNDLLAM 475
++ L SYLLKPVQR+ KY LLL++++K S+ + +D++EA S + L+ ND + +
Sbjct: 135 DHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHL 194
Query: 476 DSLRECDVNLKEQGRLLRQNEFIV--SQGKG----------KKCLRHVFLFEELILFSKA 523
++ D NL + G+LL Q F V KG K RH+FL E+ +LF K
Sbjct: 195 IAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKK 254
Query: 524 RR--FPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDI 581
R + Y YK S+ M+ +GIT + + KFEIW+ R+ E + +Q+ + +I
Sbjct: 255 REENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNARE--EVYIIQAPTPEI 312
Query: 582 KQAWTDELSNLLWKQ 596
K AW +E+ +L Q
Sbjct: 313 KAAWVNEIRKVLTSQ 327
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 179/315 (56%), Gaps = 23/315 (7%)
Query: 303 IMREMIQTERDYVKSLEYVILNYIPE----LTREDIPQALRGQRNVIFGNIEKIYEFHSQ 358
+M E++ TER YV+ L V+ Y E L I L+ ++N++FGN+E+IY FH++
Sbjct: 15 VMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNR 74
Query: 359 HFLGELEQCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYGSS-FFKAKQLEL 417
FL ELE C + P VG+CFL +F +Y Y +NKP+S++L + FF+ Q +L
Sbjct: 75 IFLRELESCIDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSDCPFFQECQKKL 134
Query: 418 ADRMDLASYLLKPVQRMGKYALLLQQLMKASR--QDVKDIKEAESMVRFQLRHGNDLLAM 475
++ L SYLLKPVQR+ KY LLL++++K S+ + +D++EA S + L+ ND + +
Sbjct: 135 DHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHL 194
Query: 476 DSLRECDVNLKEQGRLLRQNEFIV--SQGKG----------KKCLRHVFLFEELILFSKA 523
++ D NL + G+LL Q F V KG K RH+FL E+ +LF K
Sbjct: 195 IAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKK 254
Query: 524 RR--FPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDI 581
R + Y YK S+ M+ +GIT + + KFEIW+ R+ E + +Q+ + +I
Sbjct: 255 REENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNARE--EVYIIQAPTPEI 312
Query: 582 KQAWTDELSNLLWKQ 596
K AW +E+ +L Q
Sbjct: 313 KAAWVNEIRKVLTSQ 327
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 179/315 (56%), Gaps = 23/315 (7%)
Query: 303 IMREMIQTERDYVKSLEYVILNYIPE----LTREDIPQALRGQRNVIFGNIEKIYEFHSQ 358
+M E++ TER YV+ L V+ Y E L I L+ ++N++FGN+E+IY FH++
Sbjct: 15 VMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNR 74
Query: 359 HFLGELEQCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYGSS-FFKAKQLEL 417
FL ELE C + P VG+CFL +F +Y Y +NKP+S++L + FF+ Q +L
Sbjct: 75 IFLRELESCIDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSDCPFFQECQKKL 134
Query: 418 ADRMDLASYLLKPVQRMGKYALLLQQLMKASR--QDVKDIKEAESMVRFQLRHGNDLLAM 475
++ L SYLLKPVQR+ KY LLL++++K S+ + +D++EA S + L+ ND + +
Sbjct: 135 DHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHL 194
Query: 476 DSLRECDVNLKEQGRLLRQNEFIV--SQGKG----------KKCLRHVFLFEELILFSKA 523
++ D NL + G+LL Q F V KG K RH+FL E+ +LF K
Sbjct: 195 IAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKK 254
Query: 524 RR--FPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDI 581
R + + YK S+ M+ +GIT + + KFEIW+ R+ E + +Q+ + +I
Sbjct: 255 REENGEGYEKAPSFSYKQSLNMTAVGITENVKGDTKKFEIWYNARE--EVYIIQAPTPEI 312
Query: 582 KQAWTDELSNLLWKQ 596
K AW +E+ +L Q
Sbjct: 313 KAAWVNEIRKVLTSQ 327
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO 1.7
A
Length = 311
Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 162/298 (54%), Gaps = 8/298 (2%)
Query: 302 FIMREMIQTERDYVKSLEYVILNYIPELTR--EDIPQALRGQRNVIFGNIEKIYEFHSQH 359
FIM E+IQTE+ YV+ L + Y+ E+T E+IP + + +IFGN+++IYEFH+
Sbjct: 12 FIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNI 71
Query: 360 FLGELEQCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYGSSFFKAKQLELAD 419
FL ELE+ LP VG CF+ +KF +Y Y KNKP S L+ E+ S+F Q
Sbjct: 72 FLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGL 131
Query: 420 RMDLASYLLKPVQRMGKYALLLQQLMKASRQDVKDIKEAESMVRFQLRHGNDLLAMDSLR 479
++SYL+KPVQR+ KY LLL++L+ + +IK+ ++ + ND + + L
Sbjct: 132 ANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLE 191
Query: 480 ECDVNLKEQGRLLRQNEFIVSQGKG---KKCLRHVFLFEELILFSKARRFPDRKNLDLYI 536
D N++ QG L+ Q F V K K RH+FLFE ++FSK + D Y+
Sbjct: 192 GFDENIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVK--DSSGRSKYL 249
Query: 537 YKHSMKMSDIGITAQIGDSSTKFEIWF-RKRKPNETFTLQSMSEDIKQAWTDELSNLL 593
YK + S++G+T + KF +W R + L++ S + KQ W + ++
Sbjct: 250 YKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVI 307
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
Length = 313
Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 162/298 (54%), Gaps = 8/298 (2%)
Query: 302 FIMREMIQTERDYVKSLEYVILNYIPELTR--EDIPQALRGQRNVIFGNIEKIYEFHSQH 359
FIM E+IQTE+ YV+ L + Y+ E+T E+IP + + +IFGN+++IYEFH+
Sbjct: 14 FIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNI 73
Query: 360 FLGELEQCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYGSSFFKAKQLELAD 419
FL ELE+ LP VG CF+ +KF +Y Y KNKP S L+ E+ S+F Q
Sbjct: 74 FLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGL 133
Query: 420 RMDLASYLLKPVQRMGKYALLLQQLMKASRQDVKDIKEAESMVRFQLRHGNDLLAMDSLR 479
++SYL+KPVQR+ KY LLL++L+ + +IK+ ++ + ND + + L
Sbjct: 134 ANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLE 193
Query: 480 ECDVNLKEQGRLLRQNEFIVSQGKG---KKCLRHVFLFEELILFSKARRFPDRKNLDLYI 536
D N++ QG L+ Q F V K K RH+FLFE ++FSK + D Y+
Sbjct: 194 GFDENIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVK--DSSGRSKYL 251
Query: 537 YKHSMKMSDIGITAQIGDSSTKFEIWF-RKRKPNETFTLQSMSEDIKQAWTDELSNLL 593
YK + S++G+T + KF +W R + L++ S + KQ W + ++
Sbjct: 252 YKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVI 309
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 173/315 (54%), Gaps = 23/315 (7%)
Query: 303 IMREMIQTERDYVKSLEYVILNYIPE----LTREDIPQALRGQRNVIFGNIEKIYEFHSQ 358
+ E++ TER YV+ L V+ Y E L I L+ ++N++FGN E+IY FH++
Sbjct: 15 VXNELLDTERAYVEELLCVLEGYAAEXDNPLXAHLISTGLQNKKNILFGNXEEIYHFHNR 74
Query: 359 HFLGELEQCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYGSS-FFKAKQLEL 417
FL ELE C + P VG+CFL +F +Y Y +NKP+S++L + FF+ Q +L
Sbjct: 75 IFLRELESCIDCPELVGRCFLERXEEFQIYEKYCQNKPRSESLWRQCSDCPFFQECQKKL 134
Query: 418 ADRMDLASYLLKPVQRMGKYALLLQQLMKASR--QDVKDIKEAESMVRFQLRHGNDLLAM 475
++ L SYLLKPVQR+ KY LLL++ +K S+ + +D++EA S + L+ ND +
Sbjct: 135 DHKLSLDSYLLKPVQRITKYQLLLKEXLKYSKHCEGAEDLQEALSSILGILKAVNDSXHL 194
Query: 476 DSLRECDVNLKEQGRLLRQNEFIV--SQGKG----------KKCLRHVFLFEELILFSKA 523
++ D NL + G+LL Q F V KG K RH+FL E+ +LF K
Sbjct: 195 IAITGYDGNLGDLGKLLXQGSFSVWTDHKKGHTKVKELARFKPXQRHLFLHEKAVLFCKK 254
Query: 524 RR--FPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDI 581
R + Y YK S+ + +GIT + + KFEIW+ R+ E + +Q+ + +I
Sbjct: 255 REENGEGYEKAPSYSYKQSLNXTAVGITENVKGDTKKFEIWYNARE--EVYIIQAPTPEI 312
Query: 582 KQAWTDELSNLLWKQ 596
K AW + + +L Q
Sbjct: 313 KAAWVNAIRKVLTSQ 327
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure
Length = 190
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 302 FIMREMIQTERDYVKSLEYVILNYIPELTR--EDIPQALRGQRNVIFGNIEKIYEFHSQH 359
FIM E++QTE+ YV+ L + Y+ E+T E+IP + + ++IFGNI++IY+FH+
Sbjct: 15 FIMAELLQTEKAYVRDLHECLETYLWEMTSGVEEIPPGILNKEHIIFGNIQEIYDFHNNI 74
Query: 360 FLGELEQCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYGSSFFKAKQLELAD 419
FL ELE+ LP VG CF+ +KF +Y Y KNKP S+ L+ E+ +FF Q
Sbjct: 75 FLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSNQLILEHAGTFFDEIQQRHGL 134
Query: 420 RMDLASYLLKPVQRMGKYALLLQQLMKASRQDVKDIKEAESMVRFQLRHGNDLL 473
++SYL+KPVQR+ KY LLL++L+ + ++K+ ++ + ND +
Sbjct: 135 ANSISSYLIKPVQRVTKYQLLLKELLTCCEEGKGELKDGLEVMLSVPKKANDAM 188
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 33/274 (12%)
Query: 303 IMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLG 362
++ E++ TERDY+K L + Y+ + R+ Q IFGNIE IY + F+
Sbjct: 122 VINEILSTERDYIKHLRDICEGYVRQ-CRKRADMFSEEQLRTIFGNIEDIYRCQ-KAFVK 179
Query: 363 ELEQCANLPL----SVGQCFLNHENKFYLYALYNKNKPKSDA------LMTEYGSSFFKA 412
LEQ N +G CFL H+ F +Y+ Y N P + +++Y F
Sbjct: 180 ALEQRFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEAC 239
Query: 413 KQLELADRMDLASYLLKPVQRMGKYALLLQQLMKAS---RQDVKDIKEAESMVRFQLRHG 469
+ L+ + L +LL PVQ++ KY L L +L+K + +D KD++ A ++ +
Sbjct: 240 RLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLI 299
Query: 470 ND----LLAMDSLRECDVNLKE---QGRLLRQNEFI-------VSQGKGKKCLRHVFLFE 515
N+ L +D + + ++++ + L+R +E I V+Q + K R FLF+
Sbjct: 300 NERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFD 359
Query: 516 ELILFSKARRFPDRKNLDLYIYKHSMKMSDIGIT 549
+++ K D D+ YK + M + +
Sbjct: 360 HQLIYCK----KDLLRRDVLYYKGRLDMDGLEVV 389
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 29/247 (11%)
Query: 303 IMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLG 362
++ E++ TERDY+K L + Y+ + R+ Q IFGNIE IY + F+
Sbjct: 159 VINEILSTERDYIKHLRDICEGYVRQ-CRKRADXFSEEQLRTIFGNIEDIYRCQ-KAFVK 216
Query: 363 ELEQCANLPL----SVGQCFLNHENKFYLYALYNKNKPKSDA------LMTEYGSSFFKA 412
LEQ N +G CFL H+ F +Y+ Y N P + +++Y F
Sbjct: 217 ALEQRFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEAC 276
Query: 413 KQLELADRMDLASYLLKPVQRMGKYALLLQQLMKASRQDVKDIKEAES----------MV 462
+ L+ + L +LL PVQ++ KY L L +L+K + +D K+ E+ ++
Sbjct: 277 RLLQKXIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAXKNVAQLI 336
Query: 463 RFQLRHGNDLLAMDSLRECDVNLKEQGRLLRQNEFI-------VSQGKGKKCLRHVFLFE 515
+ R ++ + + + + + L+R +E I V+Q + K R FLF+
Sbjct: 337 NERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRXFFLFD 396
Query: 516 ELILFSK 522
+++ K
Sbjct: 397 HQLIYCK 403
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 16/166 (9%)
Query: 303 IMREMIQTERDYVKSLEYVILNYIPEL-TREDIPQALRGQRNVIFGNIEKIYEFHSQHFL 361
++ E++ TER Y+K L+ + Y+ + R D+ Q VIFGNIE IY F F+
Sbjct: 45 VINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSD--EQLKVIFGNIEDIYRF-QMGFV 101
Query: 362 GELEQCANLP---LS-VGQCFLNHENKFYLYALYNKNKPK-----SDALMTEYGSSFFKA 412
+LE+ N LS +G CFL H++ F++Y+ Y N S + FF+A
Sbjct: 102 RDLEKQYNNDDPHLSEIGPCFLEHQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEA 161
Query: 413 KQLELADRMDLA--SYLLKPVQRMGKYALLLQQLMKASRQDVKDIK 456
+L L +D+A +LL PVQ++ KY L L +L+K + QD D +
Sbjct: 162 CRL-LQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYR 206
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 121/276 (43%), Gaps = 52/276 (18%)
Query: 304 MREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGE 363
+RE+ QTE Y +L + +++ L R PQ + +IF NIE + H+ HFL E
Sbjct: 202 LREIQQTEEKYTDTLGSIQQHFLKPLQRFLKPQDI----EIIFINIEDLLRVHT-HFLKE 256
Query: 364 LEQCANLP--LSVGQCFLNHENKFYLYALY-------NKNKPKSDALMTEYGSSFFKAKQ 414
+++ P ++ Q F+ ++ +F +Y Y +K+ + A + + Q
Sbjct: 257 MKEALGTPGAANLYQVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQ 316
Query: 415 LELADRMDLASYLLKPVQRMGKYALLLQQLMKASRQDVKDIKEAESMVRFQLRHGNDLLA 474
R L L+ P+QR+ KY LLLQ+L+K ++ E+M + LR D A
Sbjct: 317 RANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ---------EAMEKENLRLALD--A 365
Query: 475 MDSLRECDVNLKEQGRLLRQ-----------NEFIVSQGKGK--------------KCLR 509
M L +C +K LRQ ++ + G+ K K R
Sbjct: 366 MRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLAHYGRPKIDGELKITSVERRSKMDR 425
Query: 510 HVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSD 545
+ FL ++ +L K R D +L ++ HS ++ D
Sbjct: 426 YAFLLDKALLICKRR--GDSYDLKDFVNLHSFQVRD 459
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 52/276 (18%)
Query: 304 MREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGE 363
+RE+ QTE Y +L + +++ L R PQ + +IF NIE + H+ HFL E
Sbjct: 11 LREIQQTEEKYTDTLGSIQQHFLKPLQRFLKPQDI----EIIFINIEDLLRVHT-HFLKE 65
Query: 364 LEQCANLP--LSVGQCFLNHENKFYLYALY-------NKNKPKSDALMTEYGSSFFKAKQ 414
+++ P ++ Q F+ ++ +F +Y Y +K+ + A + + Q
Sbjct: 66 MKEALGTPGAANLYQVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQ 125
Query: 415 LELADRMDLASYLLKPVQRMGKYALLLQQLMKASRQDVKDIKEAESMVRFQLRHGNDLLA 474
R L L+ P+QR+ KY LLLQ+L+K ++ E+M + LR D A
Sbjct: 126 RANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ---------EAMEKENLRLALD--A 174
Query: 475 MDSLRECDVNLKEQGRLLRQ-NEF------------------------IVSQGKGKKCLR 509
M L +C +K LRQ F I S + K R
Sbjct: 175 MRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLAHYGRPKIDGELKITSVERRSKMDR 234
Query: 510 HVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSD 545
+ FL ++ +L K R D +L ++ HS ++ D
Sbjct: 235 YAFLLDKALLICKRR--GDSYDLKDFVNLHSFQVRD 268
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 17/174 (9%)
Query: 303 IMREMIQTERDYVKSLEYVILNYI-PELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFL 361
+++ +++TE +Y K L+ V+ Y+ P T E + A + + GN+E+I F Q +
Sbjct: 17 VLQNILETENEYSKELQTVLSTYLRPLQTSEKLSSA---NISYLMGNLEEICSFQ-QMLV 72
Query: 362 GELEQCANLPLS---VGQCFLNHENKF-YLYALYNKNKPKSDALMTEYG---SSFFKAKQ 414
LE+C LP + VG CFLN + LY Y N P + ++TE+ F + K
Sbjct: 73 QSLEECTKLPEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTEHSEELGEFMETKG 132
Query: 415 LELADRMDLASYLLKPVQRMGKYALLLQQL---MKASRQDVKDIKEAESMVRFQ 465
+ L + L KP R+ KY LL++L M+ D +DI+ +SM F+
Sbjct: 133 ASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQ--KSMAAFK 184
>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|C Chain C, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|E Chain E, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|G Chain G, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 377
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 24/164 (14%)
Query: 303 IMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLG 362
++ E+++TER YVK L + Y+ L +E + + +V+FGN+ + EF + FL
Sbjct: 15 VICELLETERTYVKDLNCLXERYLKPLQKETF--LTQDELDVLFGNLTEXVEFQVE-FLK 71
Query: 363 ELE----------------QCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYG 406
LE Q + S+G FL + ++F LY+ + + K ++ +
Sbjct: 72 TLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKVLVKAK 131
Query: 407 S-----SFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLM 445
+ +F A+ L SYL+KP+QR+ KY LLL++L
Sbjct: 132 TDTAFKAFLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRELF 175
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 54/277 (19%)
Query: 304 MREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGE 363
+RE+ QTE Y +L + +++ L R PQ + IF NIE+++ H+ HFL E
Sbjct: 30 LREIQQTEEKYTDTLGSIQQHFMKPLQRFLKPQDM----ETIFVNIEELFSVHT-HFLKE 84
Query: 364 LEQCANLP--LSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYGSSFFKAKQLELAD-- 419
L+ P ++ Q F+ ++ +F +Y Y + + + ++ + Q++L +
Sbjct: 85 LKDALAGPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAR-EDVQMKLEECS 143
Query: 420 ------RMDLASYLLKPVQRMGKYALLLQQLMKASRQDVKDIKEAESMVRFQLRHGNDLL 473
R L L+ P+QR+ KY LLLQ+L+K + +D E E+ LR D
Sbjct: 144 QRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT----QDATEKEN-----LRLALD-- 192
Query: 474 AMDSLRECDVNLKEQGRLLRQ-----------NEFIVSQGKGK--------------KCL 508
AM L +C +K LRQ ++ + + G+ K K
Sbjct: 193 AMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLANYGRPKIDGELKITSVERRSKTD 252
Query: 509 RHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSD 545
R+ FL ++ +L K R D +L + HS ++ D
Sbjct: 253 RYAFLLDKALLICKRR--GDSYDLKASVNLHSFQVRD 287
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 30/187 (16%)
Query: 304 MREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGE 363
+RE+ QTE Y +L + +++ L R PQ + IF NIE+++ H+ HFL E
Sbjct: 32 LREIQQTEEKYTDTLGSIQQHFMKPLQRFLKPQDM----ETIFVNIEELFSVHT-HFLKE 86
Query: 364 LEQCANLP--LSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYGSSFFKAKQLELAD-- 419
L+ P ++ Q F+ ++ +F +Y Y + + + ++ + Q++L +
Sbjct: 87 LKDALAGPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAR-EDVQMKLEECS 145
Query: 420 ------RMDLASYLLKPVQRMGKYALLLQQLMKASRQDVKDIKEAESMVRFQLRHGNDLL 473
R L L+ P+QR+ KY LLLQ+L+K + +D E E++ L
Sbjct: 146 QRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT----QDATEKENL----------RL 191
Query: 474 AMDSLRE 480
A+D++R+
Sbjct: 192 ALDAMRD 198
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 136/365 (37%), Gaps = 88/365 (24%)
Query: 309 QTERDYVKSLEYVILNYIPELT------REDIPQ--ALRGQRNV--IFGNIEKIYEFHSQ 358
QT D VK+ I YI EL RE L +V IF I I+E S
Sbjct: 2 QTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHEL-SV 60
Query: 359 HFLGELEQCANL-------PLSVGQCF--LNHENKFYLYALYNKN--------------- 394
LG +E + PL VG CF L E F Y Y ++
Sbjct: 61 KLLGHIEDTVEMTDEGSPHPL-VGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 119
Query: 395 KPKSDALMTEYGSSFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLMKAS--RQDV 452
KP + + G F +A Q L LL PV Y LL+QL + S ++D
Sbjct: 120 KPGAALYLQSIGEGFKEAVQ------YVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDK 173
Query: 453 KDIKEA-------------------------ESMVRF--QLRHGNDLLAMDSLRECDVNL 485
+ +K+A ES RF Q G L A+ + E N+
Sbjct: 174 ECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQL-AIKKMNEIQKNI 232
Query: 486 KE-QGRLLRQ--NEFIVS---QGKGKKCLRHVFLFEELILFSKAR----RFPDRKNLDLY 535
+G+ + Q NEFI+ G K RH+FLF+ L++ K+ R P N + Y
Sbjct: 233 DGWEGKDIGQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAE-Y 291
Query: 536 IYKHSMKMSDIGITAQIGDSSTK--FEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593
K M + I + + K FEI K + + S + K W L +L
Sbjct: 292 RLKEKFFMRKVQINDKDDTNEYKHAFEIIL---KDENSVIFSAKSAEEKNNWMAALISLQ 348
Query: 594 WKQAL 598
++ L
Sbjct: 349 YRSTL 353
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 136/365 (37%), Gaps = 88/365 (24%)
Query: 309 QTERDYVKSLEYVILNYIPELT------REDIPQ--ALRGQRNV--IFGNIEKIYEFHSQ 358
QT D VK+ I YI EL RE L +V IF I I+E S
Sbjct: 199 QTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHEL-SV 257
Query: 359 HFLGELEQCANL-------PLSVGQCF--LNHENKFYLYALYNKN--------------- 394
LG +E + PL VG CF L E F Y Y ++
Sbjct: 258 KLLGHIEDTVEMTDEGSPHPL-VGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 316
Query: 395 KPKSDALMTEYGSSFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLMKAS--RQDV 452
KP + + G F +A Q L LL PV Y LL+QL + S ++D
Sbjct: 317 KPGAALYLQSIGEGFKEAVQ------YVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDK 370
Query: 453 KDIKEA-------------------------ESMVRF--QLRHGNDLLAMDSLRECDVNL 485
+ +K+A ES RF Q G L A+ + E N+
Sbjct: 371 ECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQL-AIKKMNEIQKNI 429
Query: 486 KE-QGRLLRQ--NEFIVS---QGKGKKCLRHVFLFEELILFSKAR----RFPDRKNLDLY 535
+G+ + Q NEFI+ G K RH+FLF+ L++ K+ R P N + Y
Sbjct: 430 DGWEGKDIGQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAE-Y 488
Query: 536 IYKHSMKMSDIGITAQIGDSSTK--FEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593
K M + I + + K FEI K + + S + K W L +L
Sbjct: 489 RLKEKFFMRKVQINDKDDTNEYKHAFEIIL---KDENSVIFSAKSAEEKNNWMAALISLQ 545
Query: 594 WKQAL 598
++ L
Sbjct: 546 YRSTL 550
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 136/365 (37%), Gaps = 88/365 (24%)
Query: 309 QTERDYVKSLEYVILNYIPELT------REDIPQ--ALRGQRNV--IFGNIEKIYEFHSQ 358
QT D VK+ I YI EL RE L +V IF I I+E S
Sbjct: 2 QTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHEL-SV 60
Query: 359 HFLGELEQCANL-------PLSVGQCF--LNHENKFYLYALYNKN--------------- 394
LG +E + PL VG CF L E F Y Y ++
Sbjct: 61 KLLGHIEDTVEMTDEGSPHPL-VGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 119
Query: 395 KPKSDALMTEYGSSFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLMKAS--RQDV 452
KP + + G F +A Q L LL PV Y LL+QL + S ++D
Sbjct: 120 KPGAALYLQSIGEGFKEAVQ------YVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDK 173
Query: 453 KDIKEA-------------------------ESMVRF--QLRHGNDLLAMDSLRECDVNL 485
+ +K+A ES RF Q G L A+ + E N+
Sbjct: 174 ECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQL-AIKKMNEIQKNI 232
Query: 486 KE-QGRLLRQ--NEFIVS---QGKGKKCLRHVFLFEELILFSKAR----RFPDRKNLDLY 535
+G+ + Q NEFI+ G K RH+FLF+ L++ K+ R P N + Y
Sbjct: 233 DGWEGKDIGQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAE-Y 291
Query: 536 IYKHSMKMSDIGITAQIGDSSTK--FEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593
K M + I + + K FEI K + + S + K W L +L
Sbjct: 292 RLKEKFFMRKVQINDKDDTNEYKHAFEIIL---KDENSVIFSAKSAEEKNNWMAALISLQ 348
Query: 594 WKQAL 598
++ L
Sbjct: 349 YRSTL 353
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 119/281 (42%), Gaps = 38/281 (13%)
Query: 343 NVIFGNIEKIYEFHSQHF--LGELEQCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDA 400
N IFG ++ + H + L ++ + VG + Y Y N+ + A
Sbjct: 61 NQIFGTLDSLIPLHEELLSQLRDVRKPDGSTEHVGPILVGWLPCLSSYDSYCSNQVAAKA 120
Query: 401 LM----TEYGSSFFKAKQLE--LADRMDLASYLLKPVQRMGKYALLLQQLMKASRQDVKD 454
L+ ++ F + LE + ++DL ++L P R+ KY LLL+++++ + D D
Sbjct: 121 LLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPD 180
Query: 455 ---IKEAESMVRFQLRHGNDLLAMDSLRECDVNL--KEQGR---LLRQNEFIVSQGKGKK 506
++EA ++++ + N R L E+G+ L+ + + G+ K
Sbjct: 181 QQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQKDSLIDSSRVLCCHGELKN 240
Query: 507 ---CLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGI------TAQIGDS-- 555
HVFLF+E+++ ++A + L +Y+ + + D+ + ++G S
Sbjct: 241 NRGVKLHVFLFQEVLVITRA--VTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLR 298
Query: 556 ---------STKFEIWFRKRKPNETFTLQSMSEDIKQAWTD 587
F + F+ ++T +LQ+ KQ W +
Sbjct: 299 GAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLN 339
>pdb|1FHO|A Chain A, Solution Structure Of The Ph Domain From The C. Elegans
Muscle Protein Unc-89
Length = 119
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 489 GRLLRQNEFIVSQGKGKKCLRHVFLFEELILFSK 522
GR++R + F V +G LR+VFLF I+F++
Sbjct: 8 GRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTE 41
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 276 HYSQLSLDLDSASCGVQTLK-------TQKNLLFIMREMIQTERDYVKSLEYVI------ 322
+Y +L+ D+D + L T++ + E+I TE +YV L+ V
Sbjct: 52 NYVKLTTDMDPSQQWCSDLHLLDMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKP 111
Query: 323 LNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLPLSVGQCFLNHE 382
L LT +++ + +I NI+ + + + + + + L H
Sbjct: 112 LTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHM 171
Query: 383 NKFYLYALYNKNKPKSDALMTEYGSSFFK-AKQLELADR---MDLASYLLKPVQRMGKYA 438
+ + N T+ F + K+L + R M L+S++LKP+QR+ +Y
Sbjct: 172 QPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYP 231
Query: 439 LLLQQLMKASRQDVKD 454
L+++ +++ + ++ D
Sbjct: 232 LIIKNILENTPENHPD 247
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 412 AKQLELADR---MDLASYLLKPVQRMGKYALLLQQLMKASRQDVKD 454
K+LE+ R M L+S++LKP+QR+ +Y L+++ +++ + ++ D
Sbjct: 129 VKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPD 174
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 345 IFGNIEKIYEFHSQHF--LGELEQCANLPLSVGQCFLNHENKFYLYALYNKNKPKSDALM 402
IFG+++ H +GE + +G ++ + Y Y N+ + AL+
Sbjct: 76 IFGDLDSYIPLHEDLLTRIGEATKPDGTVEQIGHILVSWLPRLNAYRGYCSNQLAAKALL 135
Query: 403 TEYGSS----FFKAKQLE--LADRMDLASYLLKPVQRMGKYALLLQQLMKASRQDVKDIK 456
+ F + LE + ++DL S+L P R+ KY LLL++++K + ++ D++
Sbjct: 136 DQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQ 195
Query: 457 EAESMV 462
E +
Sbjct: 196 LLEDAI 201
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 303 IMREMIQTERDYVKSLEYVILNYIPELTREDI--PQALRGQRNVIFGNIEKIYEFHSQHF 360
++ E+ TER +V++L+ + + ++RE I P LR IF N+E I + H
Sbjct: 28 VINELFYTERAHVRTLKVLDQVFYQRVSREGILSPSELRK----IFSNLEDILQLH---- 79
Query: 361 LGELEQC--------ANLPLSVGQCFLN------HENKFYLYALYNKNKPKSDALM---- 402
+G EQ ++ +G+ L E + A + N+P + ++
Sbjct: 80 IGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQ 139
Query: 403 ---TEYGSSFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLMK 446
+ + + A+ L R+ L + +QR+ KY LLL + K
Sbjct: 140 KKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAK 186
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 22/26 (84%)
Query: 421 MDLASYLLKPVQRMGKYALLLQQLMK 446
M L+S+LLKP+QR+ +Y LL++ +++
Sbjct: 159 MPLSSFLLKPMQRITRYPLLIRSILE 184
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 22/26 (84%)
Query: 421 MDLASYLLKPVQRMGKYALLLQQLMK 446
M L+S+LLKP+QR+ +Y LL++ +++
Sbjct: 230 MPLSSFLLKPMQRITRYPLLIRSILE 255
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 25/34 (73%)
Query: 421 MDLASYLLKPVQRMGKYALLLQQLMKASRQDVKD 454
M L+ ++LKP+QR+ +Y L+++ +++ + ++ D
Sbjct: 141 MPLSEFILKPMQRVTRYPLIIKNILENTPENHPD 174
>pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains From Hsos1
Length = 354
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 133/366 (36%), Gaps = 90/366 (24%)
Query: 309 QTERDYVKSLEYVILNYIPELT------REDIPQ--ALRGQRNV--IFGNIEKIYEFHSQ 358
QT D VK+ I YI EL RE L +V IF I I+E S
Sbjct: 2 QTYYDLVKAFXAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHEL-SV 60
Query: 359 HFLGELEQCANL-------PLSVGQCF--LNHENKFYLYALYNKN--------------- 394
LG +E PL VG CF L E F Y Y ++
Sbjct: 61 KLLGHIEDTVEXTDEGSPHPL-VGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 119
Query: 395 KPKSDALMTEYGSSFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLMKAS--RQDV 452
KP + + G F +A Q L LL PV Y LL+QL + S ++D
Sbjct: 120 KPGAALYLQSIGEGFKEAVQ------YVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDK 173
Query: 453 KDIKEA-------------------------ESMVRF--QLRHGNDLLAMDSLRECDVNL 485
+ +K+A ES RF Q G L A+ E N+
Sbjct: 174 ECLKQAITALLNVQSGXEKICSKSLAKRRLSESACRFYSQQXKGKQL-AIKKXNEIQKNI 232
Query: 486 KE-QGRLLRQ--NEFIVSQGK----GKKCLRHVFLFEELILFSKAR----RFPDRKNLDL 534
+G+ + Q NEFI +G G K RH+FLF+ L + K+ R P N +
Sbjct: 233 DGWEGKDIGQCCNEFI-XEGTLTRVGAKHERHIFLFDGLXICCKSNHGQPRLPGASNAE- 290
Query: 535 YIYKHSMKMSDIGITAQIGDSSTK--FEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNL 592
Y K + I + + K FEI K + + S + K W L +L
Sbjct: 291 YRLKEKFFXRKVQINDKDDTNEYKHAFEIIL---KDENSVIFSAKSAEEKNNWXAALISL 347
Query: 593 LWKQAL 598
++ L
Sbjct: 348 QYRSTL 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,383,259
Number of Sequences: 62578
Number of extensions: 747993
Number of successful extensions: 1873
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1795
Number of HSP's gapped (non-prelim): 39
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)