Query psy9950
Match_columns 732
No_of_seqs 364 out of 1693
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:49:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0689|consensus 100.0 7E-51 1.5E-55 444.5 17.1 344 290-635 53-404 (448)
2 KOG2996|consensus 100.0 7.4E-47 1.6E-51 407.1 21.2 356 215-595 122-513 (865)
3 KOG4424|consensus 100.0 5.1E-40 1.1E-44 357.8 25.6 296 297-607 64-383 (623)
4 KOG4240|consensus 100.0 2.7E-41 5.8E-46 391.5 13.0 297 297-598 630-933 (1025)
5 KOG3518|consensus 100.0 1.8E-37 4E-42 317.0 19.2 313 298-623 120-463 (521)
6 KOG3521|consensus 100.0 5E-31 1.1E-35 289.2 26.1 297 294-597 172-530 (846)
7 KOG3520|consensus 100.0 1.6E-31 3.4E-36 312.6 19.0 290 294-595 385-723 (1167)
8 KOG3523|consensus 100.0 1.8E-30 4E-35 283.7 22.3 287 295-590 253-591 (695)
9 cd00160 RhoGEF Guanine nucleot 100.0 3.1E-28 6.8E-33 241.1 18.9 169 300-470 1-181 (181)
10 KOG4305|consensus 100.0 3.6E-28 7.9E-33 284.0 16.8 307 292-601 328-694 (1029)
11 KOG2070|consensus 99.9 1.8E-26 4E-31 246.4 23.8 285 296-591 98-404 (661)
12 smart00325 RhoGEF Guanine nucl 99.9 6.3E-27 1.4E-31 231.5 17.9 166 303-471 1-180 (180)
13 PF00621 RhoGEF: RhoGEF domain 99.9 4.1E-24 9E-29 210.2 20.2 166 303-471 1-180 (180)
14 COG5422 ROM1 RhoGEF, Guanine n 99.9 3.6E-22 7.9E-27 225.0 9.6 294 294-592 479-833 (1175)
15 cd01232 PH_TRIO Trio pleckstri 99.9 2.7E-21 5.8E-26 176.8 12.7 108 487-594 1-113 (114)
16 KOG3522|consensus 99.9 2.4E-21 5.3E-26 219.3 14.9 235 300-550 1-270 (925)
17 KOG3519|consensus 99.8 7.5E-20 1.6E-24 217.2 16.5 229 295-525 332-596 (756)
18 cd01227 PH_Dbs Dbs (DBL's big 99.8 1.2E-19 2.6E-24 169.5 13.5 111 489-601 1-123 (133)
19 KOG3524|consensus 99.8 3.1E-19 6.7E-24 198.3 11.0 290 294-591 379-709 (850)
20 KOG3531|consensus 99.7 2.8E-18 6E-23 193.6 5.4 279 301-593 535-844 (1036)
21 cd01222 PH_clg Clg (common-sit 99.6 2E-15 4.3E-20 134.3 12.1 95 488-593 1-95 (97)
22 cd01220 PH_CDEP Chondrocyte-de 99.5 2.7E-13 5.9E-18 121.6 12.8 96 490-594 1-98 (99)
23 cd01261 PH_SOS Son of Sevenles 99.5 6.7E-13 1.5E-17 121.1 13.1 102 489-593 2-109 (112)
24 cd01219 PH_FGD FGD (faciogenit 99.4 1.4E-12 3E-17 117.7 12.5 98 490-594 1-100 (101)
25 cd01218 PH_phafin2 Phafin2 Pl 99.4 2E-12 4.4E-17 116.7 13.0 97 489-595 2-100 (104)
26 cd01223 PH_Vav Vav pleckstrin 99.4 3.8E-12 8.2E-17 115.5 11.3 105 488-594 1-112 (116)
27 cd01228 PH_BCR-related BCR (br 99.3 3.1E-12 6.8E-17 111.0 8.0 93 489-592 1-93 (96)
28 cd01224 PH_Collybistin Collybi 99.3 5.8E-11 1.3E-15 107.0 12.8 96 490-591 1-105 (109)
29 KOG4269|consensus 99.1 2.6E-11 5.6E-16 138.7 5.1 254 290-549 323-611 (1112)
30 cd01221 PH_ephexin Ephexin Ple 99.1 5.4E-10 1.2E-14 103.5 11.3 95 490-590 2-119 (125)
31 cd01226 PH_exo84 Exocyst compl 98.8 5.6E-08 1.2E-12 86.5 11.2 93 491-593 2-98 (100)
32 PF15411 PH_10: Pleckstrin hom 98.8 4.8E-08 1E-12 90.1 11.0 104 485-589 1-116 (116)
33 PF15405 PH_5: Pleckstrin homo 98.6 7.9E-08 1.7E-12 91.2 8.3 100 491-592 1-134 (135)
34 cd01225 PH_Cool_Pix Cool (clon 98.5 6.3E-07 1.4E-11 80.6 10.5 102 484-593 5-109 (111)
35 PF00169 PH: PH domain; Inter 98.3 5.7E-06 1.2E-10 72.9 11.2 94 492-593 2-103 (104)
36 smart00233 PH Pleckstrin homol 98.2 1.7E-05 3.6E-10 68.7 10.7 94 492-593 2-101 (102)
37 cd00821 PH Pleckstrin homology 97.8 0.0001 2.2E-09 63.1 8.3 80 504-591 14-95 (96)
38 cd01233 Unc104 Unc-104 pleckst 97.5 0.00099 2.1E-08 60.0 11.2 90 492-593 3-98 (100)
39 cd01246 PH_oxysterol_bp Oxyste 97.5 0.00096 2.1E-08 58.0 10.7 89 494-592 2-91 (91)
40 cd00900 PH-like Pleckstrin hom 97.4 0.0019 4E-08 55.6 11.0 80 504-591 17-98 (99)
41 cd01255 PH_TIAM TIAM Pleckstri 97.4 0.0018 3.8E-08 60.8 10.8 109 487-595 23-156 (160)
42 KOG0931|consensus 97.4 0.002 4.4E-08 70.5 13.0 166 422-595 338-527 (627)
43 cd01247 PH_GPBP Goodpasture an 97.4 0.0019 4.2E-08 57.1 10.6 88 494-591 2-90 (91)
44 cd01264 PH_melted Melted pleck 97.2 0.0032 7E-08 56.7 10.2 75 507-592 20-100 (101)
45 cd01265 PH_PARIS-1 PARIS-1 ple 97.1 0.0032 6.9E-08 56.2 9.5 55 536-594 41-95 (95)
46 cd01244 PH_RasGAP_CG9209 RAS_G 97.0 0.0026 5.6E-08 57.1 8.0 73 507-592 22-98 (98)
47 cd01252 PH_cytohesin Cytohesin 97.0 0.0064 1.4E-07 56.9 11.0 92 494-593 3-113 (125)
48 cd01260 PH_CNK Connector enhan 97.0 0.005 1.1E-07 54.7 9.5 87 494-592 3-96 (96)
49 cd01238 PH_Tec Tec pleckstrin 96.7 0.0088 1.9E-07 54.4 9.0 76 506-591 21-105 (106)
50 cd01250 PH_centaurin Centaurin 96.6 0.022 4.7E-07 49.7 10.4 88 494-591 2-93 (94)
51 cd01229 PH_etc2 Epithelial cel 96.5 0.011 2.3E-07 53.9 7.7 90 504-593 23-127 (129)
52 cd01235 PH_SETbf Set binding f 96.4 0.024 5.3E-07 50.5 9.5 77 505-593 14-101 (101)
53 cd01251 PH_centaurin_alpha Cen 96.3 0.026 5.7E-07 51.1 9.4 76 506-593 16-100 (103)
54 cd01266 PH_Gab Gab (Grb2-assoc 96.2 0.043 9.4E-07 50.0 10.0 80 505-592 18-107 (108)
55 cd01257 PH_IRS Insulin recepto 96.2 0.044 9.5E-07 49.5 9.7 91 491-591 2-100 (101)
56 cd01241 PH_Akt Akt pleckstrin 96.1 0.054 1.2E-06 48.9 10.4 91 492-592 2-101 (102)
57 cd01236 PH_outspread Outspread 95.7 0.064 1.4E-06 48.7 9.0 75 507-591 25-102 (104)
58 KOG0930|consensus 95.3 0.11 2.4E-06 54.2 9.9 93 493-593 262-375 (395)
59 cd01230 PH_EFA6 EFA6 Pleckstri 95.1 0.25 5.5E-06 45.9 10.9 83 507-593 27-111 (117)
60 KOG3524|consensus 94.8 0.33 7.1E-06 56.5 12.8 162 291-462 386-558 (850)
61 cd01253 PH_beta_spectrin Beta- 94.8 0.23 4.9E-06 44.7 9.4 79 506-591 23-103 (104)
62 KOG0690|consensus 94.0 0.15 3.2E-06 54.8 7.3 101 490-592 14-115 (516)
63 PF15409 PH_8: Pleckstrin homo 93.9 0.96 2.1E-05 39.9 11.0 72 507-592 15-88 (89)
64 cd01245 PH_RasGAP_CG5898 RAS G 93.8 0.26 5.6E-06 44.3 7.5 50 539-591 45-97 (98)
65 cd01237 Unc112 Unc-112 pleckst 93.5 0.71 1.5E-05 42.0 9.7 82 506-592 19-102 (106)
66 KOG1729|consensus 92.3 0.07 1.5E-06 56.9 1.9 105 484-598 38-145 (288)
67 PF15413 PH_11: Pleckstrin hom 92.1 1 2.2E-05 41.4 9.1 95 494-592 2-112 (112)
68 cd01263 PH_anillin Anillin Ple 92.0 0.96 2.1E-05 42.3 8.8 81 507-592 20-122 (122)
69 cd01256 PH_dynamin Dynamin ple 90.0 2.7 5.8E-05 37.7 9.0 92 492-591 2-103 (110)
70 cd01249 PH_oligophrenin Oligop 89.6 3 6.4E-05 37.9 9.3 49 540-590 53-102 (104)
71 KOG0521|consensus 89.6 15 0.00032 45.0 18.1 36 554-593 333-368 (785)
72 PF15404 PH_4: Pleckstrin homo 89.3 3.9 8.3E-05 41.1 10.8 21 570-590 162-182 (185)
73 PF14593 PH_3: PH domain; PDB: 88.2 4.3 9.4E-05 36.9 9.5 87 491-595 13-101 (104)
74 KOG3522|consensus 88.1 1.8 3.8E-05 51.8 8.6 102 296-403 11-120 (925)
75 cd01254 PH_PLD Phospholipase D 86.9 2.9 6.3E-05 38.9 7.9 27 566-592 95-121 (121)
76 KOG2059|consensus 85.1 3.6 7.8E-05 48.4 8.9 93 487-592 560-663 (800)
77 PF12814 Mcp5_PH: Meiotic cell 84.6 13 0.00027 34.8 11.0 97 492-593 9-121 (123)
78 cd01248 PH_PLC Phospholipase C 83.9 8.1 0.00018 35.4 9.3 38 554-591 77-114 (115)
79 PTZ00267 NIMA-related protein 83.7 2.6 5.7E-05 48.4 7.3 97 492-593 378-476 (478)
80 PF15410 PH_9: Pleckstrin homo 83.6 7.5 0.00016 36.0 9.0 83 507-592 27-117 (119)
81 cd01242 PH_ROK Rok (Rho- assoc 81.2 15 0.00033 33.7 9.5 38 554-593 73-110 (112)
82 PF15277 Sec3-PIP2_bind: Exocy 80.6 17 0.00036 32.2 9.6 67 518-593 20-88 (91)
83 PF08458 PH_2: Plant pleckstri 79.9 18 0.0004 33.1 9.7 31 566-596 76-106 (110)
84 cd01243 PH_MRCK MRCK (myotonic 72.0 54 0.0012 30.7 10.6 39 554-592 77-118 (122)
85 PF00611 FCH: Fes/CIP4, and EF 69.2 39 0.00085 28.9 9.0 65 298-363 26-90 (91)
86 PLN00188 enhanced disease resi 68.5 16 0.00034 43.8 8.0 99 492-595 5-111 (719)
87 KOG3751|consensus 68.4 40 0.00087 38.8 10.7 26 570-595 401-426 (622)
88 PF15406 PH_6: Pleckstrin homo 66.5 7.5 0.00016 35.5 3.8 47 538-590 64-110 (112)
89 cd00176 SPEC Spectrin repeats, 59.9 1.1E+02 0.0024 29.7 11.5 58 24-81 73-133 (213)
90 PTZ00283 serine/threonine prot 55.0 17 0.00036 42.1 5.1 36 555-593 454-489 (496)
91 cd01239 PH_PKD Protein kinase 51.1 1.3E+02 0.0028 28.0 9.0 89 492-592 1-117 (117)
92 KOG3723|consensus 50.9 8.2 0.00018 44.4 1.6 98 485-593 729-836 (851)
93 cd01259 PH_Apbb1ip Apbb1ip (Am 45.6 68 0.0015 29.6 6.3 37 556-592 66-107 (114)
94 cd01240 PH_beta-ARK Beta adren 39.3 34 0.00075 31.3 3.4 79 506-593 20-98 (116)
95 cd01231 PH_Lnk LNK-family Plec 38.6 52 0.0011 29.8 4.3 34 555-591 73-106 (107)
96 PF15408 PH_7: Pleckstrin homo 37.8 28 0.0006 30.5 2.4 83 503-591 9-95 (104)
97 cd07652 F-BAR_Rgd1 The F-BAR ( 37.5 4.9E+02 0.011 27.0 12.5 66 300-366 24-90 (234)
98 cd01262 PH_PDK1 3-Phosphoinosi 35.6 2.5E+02 0.0055 24.9 8.1 52 535-592 36-87 (89)
99 KOG0705|consensus 34.2 41 0.00088 39.2 3.7 39 555-596 444-482 (749)
100 KOG1451|consensus 32.5 9.2E+02 0.02 28.7 21.8 100 484-590 258-364 (812)
101 KOG0517|consensus 30.5 4E+02 0.0086 35.9 11.5 54 26-79 599-655 (2473)
102 KOG0932|consensus 26.6 72 0.0016 37.1 4.0 25 568-592 592-616 (774)
103 cd07648 F-BAR_FCHO The F-BAR ( 26.0 7.8E+02 0.017 25.8 14.6 66 298-368 22-87 (261)
104 cd07653 F-BAR_CIP4-like The F- 26.0 5.5E+02 0.012 26.6 10.5 70 297-367 21-91 (251)
105 cd07647 F-BAR_PSTPIP The F-BAR 25.0 7.4E+02 0.016 25.7 11.1 66 298-368 22-87 (239)
106 cd07655 F-BAR_PACSIN The F-BAR 24.9 3.6E+02 0.0078 28.4 8.9 73 295-368 19-91 (258)
107 KOG0517|consensus 22.6 3.4E+02 0.0073 36.5 8.9 66 5-78 692-760 (2473)
108 cd07680 F-BAR_PACSIN1 The F-BA 21.2 4.1E+02 0.0089 28.2 8.3 69 298-367 22-90 (258)
109 cd07599 BAR_Rvs167p The Bin/Am 20.2 3.2E+02 0.007 27.8 7.2 25 423-447 94-118 (216)
No 1
>KOG0689|consensus
Probab=100.00 E-value=7e-51 Score=444.49 Aligned_cols=344 Identities=46% Similarity=0.770 Sum_probs=323.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhc
Q psy9950 290 GVQTLKTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCAN 369 (732)
Q Consensus 290 ~~~~~k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~ 369 (732)
.....+..+++..++.|++.||..||++|..++++|+..+...++|..++++-+.||+||.+|++||...|+.+++.|..
T Consensus 53 ~~~~~~~~~k~~~v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~~lp~~lrg~~~iifgni~~i~~~h~~~fl~e~e~~~r 132 (448)
T KOG0689|consen 53 DSSEIKALKKRSFVLDELIATEVDYVKDLKSVVENYIELLDAEDLPEDLRGKDKIIFGNIKEIYEFHKKEFLPELERCER 132 (448)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhhhccccccccccccccccCCChhccCCceeeechHHHHHHhhcccCcchHHHhhh
Confidence 45667778899999999999999999999999999999999999999999999999999999999997777999999999
Q ss_pred CCCchHHHHhhhhhhhh-hHHHhhhchHHHHHHHHHHh-HHHHHHHHHhhcCCCChhhhhhhhHhhHHhhHHHHHHHHhc
Q psy9950 370 LPLSVGQCFLNHENKFY-LYALYNKNKPKSDALMTEYG-SSFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLMKA 447 (732)
Q Consensus 370 ~~~~Ig~iFl~~~~~f~-~Y~~Y~~n~~~a~~~L~~~~-~~ffk~~~~~l~~~l~L~slLikPVQRI~rY~LLLkeLlK~ 447 (732)
.+..+|++|++|...|. +|..||.|++.+...+.+.. ..||+..+.++.++++|.+||++|||||.||+|||+++++.
T Consensus 133 ~~~~~~~~f~kh~~k~~~~y~~y~q~kp~s~~~~~~~~~~~~f~~~~~~~~~~l~l~~~l~kPiQR~~kYqlLL~~~~k~ 212 (448)
T KOG0689|consen 133 DPLELGQAFAKHERKNSVLYVTYCQNKPKSDYLLAEYDNEAFFQEYQTQLGHKLDLSSYLIKPVQRIMKYQLLLQDFLKF 212 (448)
T ss_pred CHHHHHHHHHHHHHHhhhhhhhhhcCCCCCcccceecccchhhHHHhhhcccccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999997 99999999999988888776 78999999999999999999999999999999999999999
Q ss_pred Cc---ccHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccccccccccccccEEEEeCC-CCeeEEEEEccCCeEEEEEe
Q psy9950 448 SR---QDVKDIKEAESMVRFQLRHGNDLLAMDSLRECDVNLKEQGRLLRQNEFIVSQGK-GKKCLRHVFLFEELILFSKA 523 (732)
Q Consensus 448 T~---~d~~dL~~Al~~v~~~~~~iNd~~~~~~i~~~~~~L~~~grll~~g~l~v~~~~-~kk~~r~vFLF~D~LL~~K~ 523 (732)
+. .|..+|.+|.++|..+.+++|+.+.+..+++|..+++.+|.++.+++|.|+.++ |+++.|.+|||+.++||+|.
T Consensus 213 ~~~~~~d~~~l~~a~e~m~~~~~~~~d~~~~~~l~g~e~~l~~qG~l~~qd~f~v~~~~~~~~~~R~vflFe~~v~Fse~ 292 (448)
T KOG0689|consen 213 CEKAGDDTDALCKAEEVMRFVLKRCNDMMQVGRLQGFEGDLKAQGKLRRQDEFDVSHGRAGKKKDRRVFLFERLVVFSKL 292 (448)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHhHhhhccchhcccccchHhhccccccCccceeeccccccchhhhhhhhhhhhhhhh
Confidence 98 567889999999999999999999999999999999999999999999999987 66789999999999999998
Q ss_pred eeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHHHHH-HHHhHH
Q psy9950 524 RRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLLWKQ-ALRNRA 602 (732)
Q Consensus 524 kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~q-~~~~r~ 602 (732)
... .++.+.|+||..|++++++++++.++++..|+|||+.++..++|+|+|.|.++|.+|+.+|...+|.| +..+++
T Consensus 293 ~~~--~~~~~~y~yk~~ik~~~lgle~n~~~s~~rF~i~~r~~~~~~~~vlqa~s~~~k~~W~~~i~~~l~~Q~a~~n~~ 370 (448)
T KOG0689|consen 293 RKP--ESGTETYVYKQHIKVNDLGLEENNDNSASRFEIWFRGRKKREAYVLQAGSKEIKYAWTRAISSLLWQQKALLNKL 370 (448)
T ss_pred hcC--CCCCcceeeecchhhhheeeeccCCCCCcchhhhhhcccccceeEEeeCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 753 46788999999999999999999999999999999988888999999999999999999999999999 999999
Q ss_pred HHHHHHhhcCCCCCCccCCCCC-ccccccccchh
Q psy9950 603 MRLQEMSSMGIGNKPCLDIRPS-ADQISDRSISI 635 (732)
Q Consensus 603 ~rl~e~~~~gi~~~p~~di~ps-~~~i~dr~~~~ 635 (732)
.+++++.+|+.+++++.++.|+ +..++++.++.
T Consensus 371 ~~p~~~~s~~~~~~~~~~~~~~g~~~~~~~~~n~ 404 (448)
T KOG0689|consen 371 VRPARYESMESGNKSLSDIAPLGDRTLSRLATND 404 (448)
T ss_pred hhhHHHhhhcccccccccCCCCCccccchhhccc
Confidence 9999999999999999999998 55666665554
No 2
>KOG2996|consensus
Probab=100.00 E-value=7.4e-47 Score=407.11 Aligned_cols=356 Identities=23% Similarity=0.349 Sum_probs=289.9
Q ss_pred cccccccCCCC-CCcccccccccC-CCCCCCCCCC-CCCCccc------CCCCCCCCCCCCCCcccccccccccccccCC
Q psy9950 215 QRSCTWQYPTE-NYDEEEDKVSSV-DNTTEGSDTG-KSGEECC------EEPSENSLSKPMPPVSVNSHLHYSQLSLDLD 285 (732)
Q Consensus 215 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (732)
++.||+|||++ ++++|+|+|++| |+++++.+++ +++|||+ |+.|++.++...|.+|.+...
T Consensus 122 l~rGi~PFPteeese~D~dIY~sL~d~ide~d~~~~~diydcvp~E~~gdeiYedimk~e~~sm~~~~l~---------- 191 (865)
T KOG2996|consen 122 LNRGIRPFPTEEESENDEDIYQSLHDLIDETDPEDEIDIYDCVPEEDEGDEIYEDIMKNEKPSMPENDLK---------- 191 (865)
T ss_pred HhcCCCCCCChhhccChHHHHHhHHhhhhccCcccccchhccCccccccchHHHHHHhcCCCCCChhhcc----------
Confidence 67789999995 589999999999 7777776544 4899996 579999998887776654311
Q ss_pred CccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHH
Q psy9950 286 SASCGVQTLKTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELE 365 (732)
Q Consensus 286 ~~~~~~~~~k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le 365 (732)
+..-.||.+++.||.+||+.|++.|..|.++|+.||++.-.|. ++++||+|||+|..+| ..||.+|+
T Consensus 192 --------~te~dkRncClrEi~~TE~kY~~tL~sI~k~f~~PLk~~l~~a----d~~ivFiNieel~klH-t~ll~ei~ 258 (865)
T KOG2996|consen 192 --------MTETDKRNCCLREIQQTEEKYTQTLESIEKTFMEPLKRFLPPA----DYNIVFINIEELNKLH-TALLAEIE 258 (865)
T ss_pred --------CCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh----hhheeEecHHHHHHHH-HHHHHHhH
Confidence 1123469999999999999999999999999999998765544 5799999999999999 79999999
Q ss_pred HHhcCC--CchHHHHhhhhhhhhhHHHhhhchHHHHHHHHHHh--HHHHHHHHHh-----hcCCCChhhhhhhhHhhHHh
Q psy9950 366 QCANLP--LSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYG--SSFFKAKQLE-----LADRMDLASYLLKPVQRMGK 436 (732)
Q Consensus 366 ~~~~~~--~~Ig~iFl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~--~~ffk~~~~~-----l~~~l~L~slLikPVQRI~r 436 (732)
...... +.++++|+++.++|-+|+.||+|.+.|.++++++. +.+++.+..+ ..+++.|.++|..||||+.|
T Consensus 259 ~sv~v~~~qtl~qVFikyker~liYG~YCS~~e~a~k~ln~llktrEdv~~kleEct~r~nngkF~l~DLL~VPmQRvlK 338 (865)
T KOG2996|consen 259 YSVKVAGGQTLYQVFIKYKERLLIYGKYCSNVESARKLLNELLKTREDVSRKLEECTARANNGKFTLRDLLVVPMQRVLK 338 (865)
T ss_pred HHhhCCCcccHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCceeeceeeeeeHHHHHH
Confidence 988654 58999999999999999999999999999999886 5566554333 24789999999999999999
Q ss_pred hHHHHHHHHhcCc--ccHHHHHHHHHHHHHHhhhhhhHhh-----------hhhhccccccccccccccccccEEEEeCC
Q psy9950 437 YALLLQQLMKASR--QDVKDIKEAESMVRFQLRHGNDLLA-----------MDSLRECDVNLKEQGRLLRQNEFIVSQGK 503 (732)
Q Consensus 437 Y~LLLkeLlK~T~--~d~~dL~~Al~~v~~~~~~iNd~~~-----------~~~i~~~~~~L~~~grll~~g~l~v~~~~ 503 (732)
|+|||++|+|+|. .+...|+.|+++|++++..||+... ...|+++...|..+||.-..|++.+..-.
T Consensus 339 YhLLLkEL~kht~~a~ek~~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~SIenL~~pl~~~GRpkiDGElki~s~~ 418 (865)
T KOG2996|consen 339 YHLLLKELVKHTDEASEKRNLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLSIENLSQPLHDFGRPKIDGELKITSTQ 418 (865)
T ss_pred HHHHHHHHHHhcccCChhhhHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhHHhhcchHHHhCCCCcCceEEEeehh
Confidence 9999999999997 5677999999999999999998432 34677778888999999999999987644
Q ss_pred -CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCC----CCcEEEEEeecCCCeEEEEEcCC
Q psy9950 504 -GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDS----STKFEIWFRKRKPNETFTLQSMS 578 (732)
Q Consensus 504 -~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~----~~~F~I~~~~~~~~~~~~L~A~S 578 (732)
+++++||+|||+.++|+||.++ .+.....++++..+.+++..+.+..... ...+..++.+..+...+.|+|++
T Consensus 419 ~~tkqdRyiFLfDkvviVCKrkG--~sy~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws~~f~lI~tqg~ngl~fy~Kt 496 (865)
T KOG2996|consen 419 AHTKQDRYIFLFDKVVIVCKRKG--DSYELKEIIYLNAYKMSDDPIDDKDNKKVSTITWSYGFYLIHTQGRNGLEFYCKT 496 (865)
T ss_pred cCCccceEEeEecceEEEeeccC--cchhHHHHHHHHhhccccCCCCchhhhhccceeeeeeEEEEEEcCCcceEEEEec
Confidence 7889999999999999999984 2334445666677777666555432211 12233444455666799999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9950 579 EDIKQAWTDELSNLLWK 595 (732)
Q Consensus 579 ~eeK~~Wi~~I~~~i~~ 595 (732)
++.|+.|++++..++.+
T Consensus 497 e~~kkkWmeqfema~SN 513 (865)
T KOG2996|consen 497 EDLKKKWMEQFEMAKSN 513 (865)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988644
No 3
>KOG4424|consensus
Probab=100.00 E-value=5.1e-40 Score=357.78 Aligned_cols=296 Identities=24% Similarity=0.396 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCchH
Q psy9950 297 QKNLLFIMREMIQTERDYVKSLEYVILNYIPELTRED-IPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLPLSVG 375 (732)
Q Consensus 297 ~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~-~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~~~Ig 375 (732)
.+++.+|++||+.||+.||+.|..+.++|..+|.... ++. +.+..||+||..|+.||++.||..|+.+. ||
T Consensus 64 ~qk~~~iaqEll~tE~~Yv~~L~lLd~~F~~~L~~~~~~~~---~~v~~lf~nIssi~~fh~qfllp~l~~r~-----Ia 135 (623)
T KOG4424|consen 64 LQKLRHIAQELLDTERTYVKRLHLLDQVFCRRLLEEASIPA---DVITGLFGNISSIHNFHGQFLLPELEKRI-----IA 135 (623)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHHHHhhhHHHhhH-----HH
Confidence 6789999999999999999999999999999998554 443 67899999999999999888899998888 99
Q ss_pred HHHhhhhhhhhhHHHhhhchHHHHHHHHHHhH--HHHHH----HH-HhhcCCCChhhhhhhhHhhHHhhHHHHHHHHhcC
Q psy9950 376 QCFLNHENKFYLYALYNKNKPKSDALMTEYGS--SFFKA----KQ-LELADRMDLASYLLKPVQRMGKYALLLQQLMKAS 448 (732)
Q Consensus 376 ~iFl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~~--~ffk~----~~-~~l~~~l~L~slLikPVQRI~rY~LLLkeLlK~T 448 (732)
++|.+++++|++|..|++||+.|..+++.++. ..|+. ++ ++.++++.|.++||.|||||+||.|||+++++++
T Consensus 136 dv~qKlAPFLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~l 215 (623)
T KOG4424|consen 136 DVFQKLAPFLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYL 215 (623)
T ss_pred HHHHHhhhHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999972 33443 33 3468999999999999999999999999999999
Q ss_pred c---ccHHHHHHHHHHHHHHhhhhhhHhh-hhhhcc---------ccccc-cccccccccccEEEEeCC-CCeeEEEEEc
Q psy9950 449 R---QDVKDIKEAESMVRFQLRHGNDLLA-MDSLRE---------CDVNL-KEQGRLLRQNEFIVSQGK-GKKCLRHVFL 513 (732)
Q Consensus 449 ~---~d~~dL~~Al~~v~~~~~~iNd~~~-~~~i~~---------~~~~L-~~~grll~~g~l~v~~~~-~kk~~r~vFL 513 (732)
| +|+.|+++|+++|...+.|+|..+. |+..+. ...+| ...++||++|.+.....+ +...+||+||
T Consensus 216 p~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~e~dIV~PsreLiKEG~l~Kis~k~~~~qeRylfL 295 (623)
T KOG4424|consen 216 PPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGNEEDIVSPSRELIKEGQLQKISAKNGTTQERYLFL 295 (623)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCcHHHHhhccceeeeeccCCCcceeEEEE
Confidence 8 5889999999999999999998764 332221 23334 344678999999887766 7889999999
Q ss_pred cCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC-CCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 514 FEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD-SSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 514 F~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~-~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
|||++++|+++.. .....|.....+.+..+.+.+.... -+..|. ..+..+++.|+|.|.++|+.|++.|+.+
T Consensus 296 FNd~~lyc~~r~~---~~~~k~~~r~~~s~~~~~v~~~~~~~~~~tF~----~~G~~r~vel~a~t~~ek~eWv~~I~~~ 368 (623)
T KOG4424|consen 296 FNDILLYCKPRKR---LPGSKYEVRARCSISHMQVQEDDNEELPHTFI----LTGKKRGVELQARTEQEKKEWVQAIQDA 368 (623)
T ss_pred ehhHHHhhhhhhh---cccceeccceeeccCcchhcccccccCCceEE----EecccceEEeecCchhhHHHHHHHHHHH
Confidence 9999999998853 3456788888888888877654322 233443 3566789999999999999999999999
Q ss_pred HHHHHHHhHHHHHHH
Q psy9950 593 LWKQALRNRAMRLQE 607 (732)
Q Consensus 593 i~~q~~~~r~~rl~e 607 (732)
|.++.+.....|...
T Consensus 369 Id~~kq~~eTfr~~s 383 (623)
T KOG4424|consen 369 IDKHKQCRETFRKDS 383 (623)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999998888877553
No 4
>KOG4240|consensus
Probab=100.00 E-value=2.7e-41 Score=391.49 Aligned_cols=297 Identities=36% Similarity=0.623 Sum_probs=268.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy9950 297 QKNLLFIMREMIQTERDYVKSLEYVILNYIPELTRED---IPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLPLS 373 (732)
Q Consensus 297 ~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~---~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~~~ 373 (732)
.+++..++.|+|+||+.||++|..+.+.|+..+.... .|..+ +....||+|+++|++||++.||.+|+++...|..
T Consensus 630 arl~~~~m~ellqterayv~~L~~~l~~y~~e~d~~~~~i~~~~L-nk~~~ifgnmeeiy~fhn~~~L~eLe~y~~~pE~ 708 (1025)
T KOG4240|consen 630 ARLKRHVMRELLQTERAYVRDLEECLEGYLAEMDSPMKEILPPLL-NKKEIIFGNMEEIYEFHNDIFLSELEKYEQLPED 708 (1025)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcccccc-chHHHHHhhHHHHHHHHhhHHHHHhhhhccCHHH
Confidence 3556899999999999999999999999999987542 34444 4899999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhhhHHHhhhchHHHHHHHHHHh-HHHHHHHHHhhcCCCChhhhhhhhHhhHHhhHHHHHHHHhcCcccH
Q psy9950 374 VGQCFLNHENKFYLYALYNKNKPKSDALMTEYG-SSFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLMKASRQDV 452 (732)
Q Consensus 374 Ig~iFl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~-~~ffk~~~~~l~~~l~L~slLikPVQRI~rY~LLLkeLlK~T~~d~ 452 (732)
||+||+.+++.|.+|..||.|+|.+..++..+. -.||..+++.....+.+.+||++|||||+||.|||+++++.+.+..
T Consensus 709 Vg~~fle~~d~fqly~~Yc~nke~S~ql~~~~a~~~ff~e~qr~~~l~l~~~S~l~kpvqritkYqlllkell~~c~e~~ 788 (1025)
T KOG4240|consen 709 VGHCFLERADDFQLYAKYCQNKELSNQLIRLHAGCSFFQEIQRRHGLELSISSYLIKPVQRITKYQLLLKELLKCCCEGT 788 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcchHHHHHhcccccccHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHhhhhch
Confidence 999999999999999999999999999999887 4599999998888889999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhhhhccccccccccccccccccEEEEeCC---CCeeEEEEEccCCeEEEEEeeeCCCC
Q psy9950 453 KDIKEAESMVRFQLRHGNDLLAMDSLRECDVNLKEQGRLLRQNEFIVSQGK---GKKCLRHVFLFEELILFSKARRFPDR 529 (732)
Q Consensus 453 ~dL~~Al~~v~~~~~~iNd~~~~~~i~~~~~~L~~~grll~~g~l~v~~~~---~kk~~r~vFLF~D~LL~~K~kk~~~~ 529 (732)
.+|++|+++|-.+.+.+||.|+...|++++.+|.+.|.+|.+|.|.||..+ .|..+||+|||+-.|||||.....
T Consensus 789 ~~lkd~l~~ml~v~k~~nd~mh~~~~~~~d~nl~~lg~~~~q~~f~vw~~k~l~rk~~erhlfl~ei~ivf~K~~~~s-- 866 (1025)
T KOG4240|consen 789 GDLKDALEVMLSVPKKVNDSMHLIALEGYDGNLDELGKLIMQDSFSVWKPKALARKGMERHLFLFEISIVFCKRIEES-- 866 (1025)
T ss_pred HHHHHHHHHHHhhhhhcccccCHHHHhhhhhhHHHHHHHHhhccceeecHHHHhhhhHHHHHHHHHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999776 466799999999999999987532
Q ss_pred CCCcceEEeeeeeecceEEEEecCCCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Q psy9950 530 KNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLLWKQAL 598 (732)
Q Consensus 530 ~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~q~~ 598 (732)
++...|.+++.++++.++|++++.+++++|++|.+... ..|+++|++.+.|..|++.|++++.++..
T Consensus 867 ~~~~~~~~~~~l~~~e~gite~v~Gd~~kf~~~~g~~~--~~~~~~a~~~~~K~~W~~~ir~~~~~~~~ 933 (1025)
T KOG4240|consen 867 SERIKYVSKKKLPMSEVGITEHVEGDPCKFELWVGRTE--SVIDLKASNHETKQKWVKEIREVLQERTI 933 (1025)
T ss_pred cCCCcchhhccCCHHhhcchhhcccCceEEEEeccCCC--cceeeecCCcchhhhhccchHHHHHHHHH
Confidence 33445666666999999999999999999999986433 49999999999999999999999866543
No 5
>KOG3518|consensus
Probab=100.00 E-value=1.8e-37 Score=317.01 Aligned_cols=313 Identities=27% Similarity=0.435 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCchH
Q psy9950 298 KNLLFIMREMIQTERDYVKSLEYVILNYIPELT--REDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLPLSVG 375 (732)
Q Consensus 298 ~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~--~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~~~Ig 375 (732)
-...+|+.||++||++||.+|+.+++.|+.-+. +..++.. .+.+..+||||++|+.|+ ..++++|+.+..+...|+
T Consensus 120 ~~ldriaieildtertyvedl~aiie~yld~i~edqeklkl~-ldaisalfg~ie~ifafn-kel~n~ldaadld~v~ia 197 (521)
T KOG3518|consen 120 LHLDRIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLG-LDAISALFGCIEDIFAFN-KELLNDLDAADLDCVAIA 197 (521)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCc-HHHHHHHhhhHHHHHHHH-HHHHHHHhhcccchHHHH
Confidence 346679999999999999999999999999997 3345443 378999999999999999 699999999999999999
Q ss_pred HHHhhhhhhhhhHHHhhhchHHHHHHHHHHh-----HHHHHHHHHhhcCCCChhhhhhhhHhhHHhhHHHHHHHHhcCc-
Q psy9950 376 QCFLNHENKFYLYALYNKNKPKSDALMTEYG-----SSFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLMKASR- 449 (732)
Q Consensus 376 ~iFl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~-----~~ffk~~~~~l~~~l~L~slLikPVQRI~rY~LLLkeLlK~T~- 449 (732)
.||+.....|..|..||.||+..++.|.++. ..+|+..|..+.+.+.|.+||++|||||.||.|+|.+|+|+.+
T Consensus 198 ~cfve~s~efe~yieyctny~rmmatl~~~~q~~ilaka~qerq~al~hsl~l~ayllkpvqrilkyhlfle~i~k~l~~ 277 (521)
T KOG3518|consen 198 ECFVEKSEEFEDYIEYCTNYHRMMATLTECMQNKILAKAFQERQEALKHSLPLGAYLLKPVQRILKYHLFLEEIEKHLDK 277 (521)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999886 5788999999999999999999999999999999999999987
Q ss_pred ----ccHHHHHHHHHHHHHHhhhhhhHhh-------h----hhhcccc------ccccccccccccccEEEEeCCCCeeE
Q psy9950 450 ----QDVKDIKEAESMVRFQLRHGNDLLA-------M----DSLRECD------VNLKEQGRLLRQNEFIVSQGKGKKCL 508 (732)
Q Consensus 450 ----~d~~dL~~Al~~v~~~~~~iNd~~~-------~----~~i~~~~------~~L~~~grll~~g~l~v~~~~~kk~~ 508 (732)
+++..++.|.+.|..++.+|||..+ + ..++++. .+|...|.++.++.|.+. |.+..
T Consensus 278 ~thpeel~qvk~ahd~m~~qa~~indekkkaeh~erlgeiqs~lqkwkadeiqi~dlsaygdllleatfr~a---gak~~ 354 (521)
T KOG3518|consen 278 DTHPEELDQVKDAHDTMQRQAAHINDEKKKAEHAERLGEIQSLLQKWKADEIQIPDLSAYGDLLLEATFRIA---GAKNE 354 (521)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccCCchhhhHHHHHHHHHHHh---ccccc
Confidence 4566789999999999999998543 1 1222332 456778999999998864 35679
Q ss_pred EEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEec-CCCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHH
Q psy9950 509 RHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQI-GDSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTD 587 (732)
Q Consensus 509 r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~-~~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~ 587 (732)
|.+|||+.+|||+|.+ ...|+||..|...++.+.+.+ ...+..|.++.. ..+.-.++|+|+|.++|..|+.
T Consensus 355 rllflfdellli~kkr-------~anf~~k~~ilc~nlmlne~icpeeplsfqv~~f-dnpkaq~~fma~sme~kr~wm~ 426 (521)
T KOG3518|consen 355 RLLFLFDELLLITKKR-------DANFTCKAHILCGNLMLNEVICPEEPLSFQVFHF-DNPKAQHTFMAKSMEDKRLWML 426 (521)
T ss_pred chHHHHHhHHhheeec-------CCceeeehhhhccchhhheeccCCCCceeEEEec-CCcchhhhhhhhhhHHHHHHHH
Confidence 9999999999999986 247999999999999988876 678899998543 4566789999999999999999
Q ss_pred HHHHHHHHH-HHHhHHHHHHHHhhcCCCCCCccCCCC
Q psy9950 588 ELSNLLWKQ-ALRNRAMRLQEMSSMGIGNKPCLDIRP 623 (732)
Q Consensus 588 ~I~~~i~~q-~~~~r~~rl~e~~~~gi~~~p~~di~p 623 (732)
.|.++|-.+ +..--++..|-|.+|..-..|-|---|
T Consensus 427 elkrlildh~a~eip~kakq~il~id~~~~~~f~~sp 463 (521)
T KOG3518|consen 427 ELKRLILDHHAAEIPAKAKQAILEIDAIHHPGFCRSP 463 (521)
T ss_pred HHHHHHHhhhhccCchHHHhhHhhhcccccCCCCcCc
Confidence 999987664 444455666667776555545443333
No 6
>KOG3521|consensus
Probab=99.98 E-value=5e-31 Score=289.22 Aligned_cols=297 Identities=23% Similarity=0.295 Sum_probs=233.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhc-
Q psy9950 294 LKTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELT---REDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCAN- 369 (732)
Q Consensus 294 ~k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~---~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~- 369 (732)
..+..|.|.+||||++||-.||+.|..+.+.|.--|. +..+..+ -+-..+|+|+..|++.|...++.-|.-...
T Consensus 172 S~~~~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~d--VeaerlFsNv~~l~~~n~slW~~~l~P~lak 249 (846)
T KOG3521|consen 172 SDKSCKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKD--VEAERLFSNVPTLFNVNRSLWLQVLEPILAK 249 (846)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh--hHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999999999998887776 4444443 256899999999999994334444443332
Q ss_pred -----CCC---chHHHHhhhhhhhhhHHHhhhchHHHHHHHHHHh------HHHHHHHH-HhhcCCCChhhhhhhhHhhH
Q psy9950 370 -----LPL---SVGQCFLNHENKFYLYALYNKNKPKSDALMTEYG------SSFFKAKQ-LELADRMDLASYLLKPVQRM 434 (732)
Q Consensus 370 -----~~~---~Ig~iFl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~------~~ffk~~~-~~l~~~l~L~slLikPVQRI 434 (732)
.+. .+-.-|+.|...|..|..||..+...++.++++. .+|+..+. ++.++++.|.+.|++|+|||
T Consensus 250 sr~TgepLd~~~lq~GFl~f~s~f~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~RqkL~D~l~kPmQRL 329 (846)
T KOG3521|consen 250 SRETGEPLDPNYLQNGFLDFGSWFRPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQKNCDRQKLIDTLSKPMQRL 329 (846)
T ss_pred HHhhCCCCChHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHHHHHHhhhHHHHh
Confidence 233 4566799999999999999999999999998775 35555554 45789999999999999999
Q ss_pred HhhHHHHHHHHhcCc--ccHHHHHHHHHHHHHHhhhhhhHhh-----------hhhhccccc----------cccc----
Q psy9950 435 GKYALLLQQLMKASR--QDVKDIKEAESMVRFQLRHGNDLLA-----------MDSLRECDV----------NLKE---- 487 (732)
Q Consensus 435 ~rY~LLLkeLlK~T~--~d~~dL~~Al~~v~~~~~~iNd~~~-----------~~~i~~~~~----------~L~~---- 487 (732)
+||+|||+.++|+|+ .+.+.+.+.++.++.++.++|..+. |..|+.+++ +|+.
T Consensus 330 TKY~LLLkAVlK~t~d~~e~Eai~aMi~svEsf~~~vN~~l~qrqererL~~vm~rIe~ydvVd~~sdevdknLK~~~~~ 409 (846)
T KOG3521|consen 330 TKYPLLLKAVLKVTTDEREREAISAMIDSVESFTAHVNKELRQRQERERLAAVMRRIEGYDVVDQDSDEVDKNLKLFLNL 409 (846)
T ss_pred hhhHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccCCcHHHHHHHhhhhhhh
Confidence 999999999999998 4566788888889999999997654 455665532 1211
Q ss_pred --------------cccccccccEEEEeCCCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecC
Q psy9950 488 --------------QGRLLRQNEFIVSQGKGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIG 553 (732)
Q Consensus 488 --------------~grll~~g~l~v~~~~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~ 553 (732)
-+.|+.+|.+.+.++++.|-++|||||+|+||+||+.+. +....-+++.++-+..+.+....
T Consensus 410 ~Dl~apm~g~~~~htRqLlleGdlrmKegk~sK~DVhcfLfTDllLVcK~v~k---~~drlKVIRpPll~dklv~q~~~- 485 (846)
T KOG3521|consen 410 LDLTAPMHGRKPEHTRQLLLEGDLRMKEGKGSKADVHCFLFTDLLLVCKKVQK---KADRLKVIRPPLLMDKLVCQYLR- 485 (846)
T ss_pred hccccCCCCCChhhhhhhhhccceecccCCCcccceeeeeehhHHHHhHHHhh---hcccceeeccchhhcceeeeecC-
Confidence 267999999999999988889999999999999998753 13456788999999988776543
Q ss_pred CCCCcEEEEEee--cCCCeEEEEEcCCHHHHHHHHHHHHHHHHHHH
Q psy9950 554 DSSTKFEIWFRK--RKPNETFTLQSMSEDIKQAWTDELSNLLWKQA 597 (732)
Q Consensus 554 ~~~~~F~I~~~~--~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~q~ 597 (732)
+++.|.+++.. ......|+|+|+.++++..|++.|.+|..+..
T Consensus 486 -dpnsf~lVhLtEFh~a~~ayt~hcs~p~d~~~W~D~l~~Aq~~~Q 530 (846)
T KOG3521|consen 486 -DPNSFLLVHLTEFHTAQAAYTMHCSGPEDTLRWTDMLKMAQDELQ 530 (846)
T ss_pred -CCCceEEEeechhhhhhhhheeecCChhhHHHHHHHHHHHHHHHH
Confidence 44566655433 23456899999999999999999999876543
No 7
>KOG3520|consensus
Probab=99.97 E-value=1.6e-31 Score=312.64 Aligned_cols=290 Identities=19% Similarity=0.346 Sum_probs=239.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCC-
Q psy9950 294 LKTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLPL- 372 (732)
Q Consensus 294 ~k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~~- 372 (732)
.+...|||.||+||+.||+..|+.|+++..+|+.+|.+..+.+ .+.+..||.|+++|+++| ..|+..|..+...+.
T Consensus 385 k~~~iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q~m~~e~~~~--~~~l~~LFP~LdeL~eiH-~~f~~~lk~rr~e~~~ 461 (1167)
T KOG3520|consen 385 KKDVVKRQEVIYELFQTERHHVRTLKILDRVFYQPMMEELLFP--QEELNKLFPCLDELIEIH-SSFLQRLKERRKESLV 461 (1167)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHhcccHHHHHHHH-HHHHHHHHHHHHhccc
Confidence 4556799999999999999999999999999999999877655 478999999999999999 599999999887654
Q ss_pred ---chHHHHhhhh-----hhh-hhHHHhhhchHHHHHHHHHHh------HHHHHHHH-HhhcCCCChhhhhhhhHhhHHh
Q psy9950 373 ---SVGQCFLNHE-----NKF-YLYALYNKNKPKSDALMTEYG------SSFFKAKQ-LELADRMDLASYLLKPVQRMGK 436 (732)
Q Consensus 373 ---~Ig~iFl~~~-----~~f-~~Y~~Y~~n~~~a~~~L~~~~------~~ffk~~~-~~l~~~l~L~slLikPVQRI~r 436 (732)
.||++++.++ +.| +.|+.||.++..|.+.++.+. ..|++.+. ...|+++.|.++++.-+|||+|
T Consensus 462 vI~~IGDlLl~~FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p~cRRL~lkd~I~~v~QRLTK 541 (1167)
T KOG3520|consen 462 VIKRIGDLLLDQFSGENAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNPVCRRLGLKDCILLVTQRLTK 541 (1167)
T ss_pred hHHHHHHHHHHHcCchHHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcchHHHhhcchHHHHHHHHHHhh
Confidence 7999999887 456 899999999999999998875 34555543 3478999999999999999999
Q ss_pred hHHHHHHHHhcCc---ccHHHHHHHHHHHHHHhhhhhhHhh----hhhhcccc-------------------cccccccc
Q psy9950 437 YALLLQQLMKASR---QDVKDIKEAESMVRFQLRHGNDLLA----MDSLRECD-------------------VNLKEQGR 490 (732)
Q Consensus 437 Y~LLLkeLlK~T~---~d~~dL~~Al~~v~~~~~~iNd~~~----~~~i~~~~-------------------~~L~~~gr 490 (732)
|||||+.|+|+|. .|+++|+.|++.++.++.+||..++ ..+++++. .+| ..++
T Consensus 542 YPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~~s~~~~~~~~~F~kldL-t~rk 620 (1167)
T KOG3520|consen 542 YPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDAKSLSKYKNGEEFRKLDL-TRRK 620 (1167)
T ss_pred chHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhccccchhhhhhh-hhhh
Confidence 9999999999997 6899999999999999999998654 11222221 111 1478
Q ss_pred ccccccEEEEeCCCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEee------eeeecceEEEEecCCCCCcEEEEEe
Q psy9950 491 LLRQNEFIVSQGKGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKH------SMKMSDIGITAQIGDSSTKFEIWFR 564 (732)
Q Consensus 491 ll~~g~l~v~~~~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~------~i~l~~i~v~e~~~~~~~~F~I~~~ 564 (732)
||+.|.+++...+||.++.|++||+|+|||..++. +.|+|+. .|+|..+ |+..+..+...|-|++.
T Consensus 621 LihdG~Ltwk~~~gk~~dv~vlLLtD~LvlLqeqD-------~Kyifksl~~~spVisL~~l-ivRevAtd~ka~FlIs~ 692 (1167)
T KOG3520|consen 621 LIHDGPLTWKTARGKTKDVHVLLLTDILVLLQEKD-------QKYIFKSLDKKSPVISLQKL-IVREVATDEKAFFLISM 692 (1167)
T ss_pred eeccCceEEeeccCchhhhHHHHHHHHHHHhhhcC-------ceeEeeccccCCCceehHHH-HHHHHhccccceEEEec
Confidence 99999999998899999999999999999987652 2677763 4677777 44445555666666665
Q ss_pred ecCCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q psy9950 565 KRKPNETFTLQSMSEDIKQAWTDELSNLLWK 595 (732)
Q Consensus 565 ~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~ 595 (732)
...+.+.|.|.|.|.++|+.|++.|.+++..
T Consensus 693 s~~~pqmYEL~a~T~serntW~~li~~~v~s 723 (1167)
T KOG3520|consen 693 SDQGPEMYELVAQSKSERNTWIQLIQDAVAS 723 (1167)
T ss_pred CCCCCeeEEEecCCHHHHHHHHHHHHHHHHh
Confidence 5556789999999999999999999999744
No 8
>KOG3523|consensus
Probab=99.97 E-value=1.8e-30 Score=283.73 Aligned_cols=287 Identities=19% Similarity=0.292 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC---
Q psy9950 295 KTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLP--- 371 (732)
Q Consensus 295 k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~--- 371 (732)
-.++|+|+++.|+|++|..|+++|++++++|+..-.-.+... ..+...+|+||.++.+.. +.||.+|+.+..++
T Consensus 253 ~eerklQEa~FEviTSEaSYl~SLnllv~hF~~s~~l~~~Ls--~~d~~~LFSni~~V~~~S-erfl~dLE~r~e~ni~i 329 (695)
T KOG3523|consen 253 PEERKLQEAKFEVITSEASYLRSLNLLVDHFMNSKELRSTLS--ASDRHHLFSNIQDVREVS-ERFLCDLEARLEENIFI 329 (695)
T ss_pred HHHHHHHhhhheeehhhHHHHHHHHHHHHHHhhhHHHHHhcC--hHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHhCchh
Confidence 356899999999999999999999999999998744222222 467899999999999999 89999999999765
Q ss_pred CchHHHHhhhhhh-hhhHHHhhhchHHHHHHHHHHh--HHHHHHHHH-----hhcCCCChhhhhhhhHhhHHhhHHHHHH
Q psy9950 372 LSVGQCFLNHENK-FYLYALYNKNKPKSDALMTEYG--SSFFKAKQL-----ELADRMDLASYLLKPVQRMGKYALLLQQ 443 (732)
Q Consensus 372 ~~Ig~iFl~~~~~-f~~Y~~Y~~n~~~a~~~L~~~~--~~ffk~~~~-----~l~~~l~L~slLikPVQRI~rY~LLLke 443 (732)
..|+||..+|++. |.+|..||.|.-+...+++.+. +.-|+.... +.|.+++|.+|||.|||||+||+|||+.
T Consensus 330 ~dicDiv~~ha~~~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p~C~~Lpl~SFLiLPmQRITRL~LLl~n 409 (695)
T KOG3523|consen 330 DDICDIVEDHAAKHFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSPKCQGLPLRSFLILPMQRITRLPLLLDN 409 (695)
T ss_pred hHHHHHHHHhcccccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCccccCCCchhhhhchHHHHHHHHHHHHH
Confidence 4899999999965 6999999999999999999987 444554432 3588999999999999999999999999
Q ss_pred HHhcCcc---cHHHHHHHHHHHHHHhhhhhhHhh-hhhhccc-------cc-c------ccccccccccccEEEEeCC--
Q psy9950 444 LMKASRQ---DVKDIKEAESMVRFQLRHGNDLLA-MDSLREC-------DV-N------LKEQGRLLRQNEFIVSQGK-- 503 (732)
Q Consensus 444 LlK~T~~---d~~dL~~Al~~v~~~~~~iNd~~~-~~~i~~~-------~~-~------L~~~grll~~g~l~v~~~~-- 503 (732)
|++.|.+ +++.-.+|+..++.+++.+|+... |...+++ .. . +...+.|+++|+++-....
T Consensus 410 Il~rt~~~ser~~~a~~Al~av~klVr~CNe~a~rMertEeli~i~~~leF~kvK~~PLiS~sRwLvk~GELt~l~~~~~ 489 (695)
T KOG3523|consen 410 ILKRTEEGSERYETATKALKAVSKLVRDCNEGARRMERTEELIRISRQLEFKKVKAFPLVSQSRWLVKRGELTQLVERRA 489 (695)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeeeccchhhhhhccccceeecccc
Confidence 9999984 455667778889999999998442 3222211 11 1 2235778899999643322
Q ss_pred -------CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEec------CCC------CCcEEEEEe
Q psy9950 504 -------GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQI------GDS------STKFEIWFR 564 (732)
Q Consensus 504 -------~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~------~~~------~~~F~I~~~ 564 (732)
...+..|+|||||+|||||+|. ...|.+...-+...+.+.... ++. ++-|.+.+.
T Consensus 490 s~~l~~k~~~~~vylfLFnD~Llitk~k~------~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl 563 (695)
T KOG3523|consen 490 SPLLFSKRLSKTVYLFLFNDLLLITKKKS------EGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLL 563 (695)
T ss_pred cchhhcccccceeeeeeecceeeEeeecC------CCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehh
Confidence 2345889999999999999983 223444443333333332211 111 245776654
Q ss_pred ec--CCCeEEEEEcCCHHHHHHHHHHHH
Q psy9950 565 KR--KPNETFTLQSMSEDIKQAWTDELS 590 (732)
Q Consensus 565 ~~--~~~~~~~L~A~S~eeK~~Wi~~I~ 590 (732)
.+ .....+.|.|.|..+++.|+.++.
T Consensus 564 ~N~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 564 SNHQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred hccCCCceeeeecCCchHHHHHHHHhcC
Confidence 43 344689999999999999998875
No 9
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.96 E-value=3.1e-28 Score=241.07 Aligned_cols=169 Identities=34% Similarity=0.576 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC----CchH
Q psy9950 300 LLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLP----LSVG 375 (732)
Q Consensus 300 Rq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~----~~Ig 375 (732)
|+.||+||++||+.||++|+.+++.|+.||...... ....++..||+||++|+++| +.|+.+|+.+..++ ..||
T Consensus 1 r~~vi~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~-~~~~~~~~iF~~i~~i~~~h-~~~l~~l~~~~~~~~~~~~~i~ 78 (181)
T cd00160 1 RQEVIKELLQTERNYVRDLKLLVEVFLKPLDKELLP-LSPEEVELLFGNIEEIYEFH-RIFLKSLEERVEEWDKSGPRIG 78 (181)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHhccCcccchHH
Confidence 688999999999999999999999999999876542 22477899999999999999 69999999998764 5899
Q ss_pred HHHhhhhhhhhhHHHhhhchHHHHHHHHHHh--HHHHHHHHHhh---cCCCChhhhhhhhHhhHHhhHHHHHHHHhcCc-
Q psy9950 376 QCFLNHENKFYLYALYNKNKPKSDALMTEYG--SSFFKAKQLEL---ADRMDLASYLLKPVQRMGKYALLLQQLMKASR- 449 (732)
Q Consensus 376 ~iFl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~--~~ffk~~~~~l---~~~l~L~slLikPVQRI~rY~LLLkeLlK~T~- 449 (732)
++|+++.+.|..|..||.|++.+.+.++.+. +.+|+...... .++++|.+||++|||||+||+|||++|+|+|+
T Consensus 79 ~~f~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~l~~~L~~PvQRl~rY~lLL~~l~k~t~~ 158 (181)
T cd00160 79 DVFLKLAPFFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAESECGRLKLESLLLKPVQRLTKYPLLLKELLKHTPD 158 (181)
T ss_pred HHHHHhhhHHHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHHhcccCCHHHHhhhhHHHhchHHHHHHHHHHhCCC
Confidence 9999999988999999999999999999986 55666654433 68899999999999999999999999999998
Q ss_pred --ccHHHHHHHHHHHHHHhhhhh
Q psy9950 450 --QDVKDIKEAESMVRFQLRHGN 470 (732)
Q Consensus 450 --~d~~dL~~Al~~v~~~~~~iN 470 (732)
+|+..|++|++.++.++.++|
T Consensus 159 ~~~d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 159 GHEDREDLKKALEAIKEVASQVN 181 (181)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 577889999999999999887
No 10
>KOG4305|consensus
Probab=99.95 E-value=3.6e-28 Score=284.02 Aligned_cols=307 Identities=22% Similarity=0.334 Sum_probs=221.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-Cchhhh-hhHHHHhCCHHHHHHHHHHHHHHHHHHHhc
Q psy9950 292 QTLKTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTRED-IPQALR-GQRNVIFGNIEKIYEFHSQHFLGELEQCAN 369 (732)
Q Consensus 292 ~~~k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~-~p~~l~-~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~ 369 (732)
.-.+++.|||.+|.||+.||+.||++|+++.+.|++||.+.. +|...+ +.+..||+|+++|+.+| ..||..|..+.+
T Consensus 328 ~ls~rEikRQe~I~Eli~tE~d~v~dLel~re~y~kpl~~S~iipE~~~~~Fi~~vF~n~~~ii~ln-~~LL~aL~~r~k 406 (1029)
T KOG4305|consen 328 SLSPREIKRQEAIFELIYTEEDFVADLELAREIYRKPLLESSIIPEQERAEFIAHVFGNIEEIIQLN-EKLLKALRVRQK 406 (1029)
T ss_pred hcCHHHhhhhheeEEEEeehhHHHHHHHHHHHHHhChHhhhccCccchhHHHHHHHHhhHHHHHHHH-HHHHHHHHHhhc
Confidence 346789999999999999999999999999999999998774 554332 45999999999999999 799999998886
Q ss_pred CC---CchHHHHhhhhhhhhhHHHhhhchHHHHHHHHHHh------HHHHHHHHH-hhcCCCChhhhhhhhHhhHHhhHH
Q psy9950 370 LP---LSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYG------SSFFKAKQL-ELADRMDLASYLLKPVQRMGKYAL 439 (732)
Q Consensus 370 ~~---~~Ig~iFl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~------~~ffk~~~~-~l~~~l~L~slLikPVQRI~rY~L 439 (732)
.. ..||++|+.|.+.|+.|..||++++.|.++++... +.|++.++. ..+.+++|.+||.+|+||+.||+|
T Consensus 407 ~~G~V~~IGdIll~~lp~~~~yi~Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~sp~~rkl~L~~FL~kp~sRl~RYpL 486 (1029)
T KOG4305|consen 407 LSGVVEGIGDILLAWLPKAEPYISYGANQAYAKALIEQKKKQNPRFARFLKECESSPESRKLDLVSFLTKPTSRLQRYPL 486 (1029)
T ss_pred cCCccchHHHHHHHHhhhhhHHHHHHhhhHHHHHHHHHHhccCchHHHHHHHHHhChhhhccchhhhhccccchhheeeH
Confidence 53 48999999999999999999999999999998774 455666554 467899999999999999999999
Q ss_pred HHHHHHhcC-c---ccHHHHHHHHHHHHHHhhhhhhHhhh----hhhccc------------cccccc-cccccccccEE
Q psy9950 440 LLQQLMKAS-R---QDVKDIKEAESMVRFQLRHGNDLLAM----DSLREC------------DVNLKE-QGRLLRQNEFI 498 (732)
Q Consensus 440 LLkeLlK~T-~---~d~~dL~~Al~~v~~~~~~iNd~~~~----~~i~~~------------~~~L~~-~grll~~g~l~ 498 (732)
||++|||+| | +|+..|+.|+++++.++.++|....- ..++.. ...+.. .+.++..|-+.
T Consensus 487 llr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~~g~aen~~~l~~l~~qllfe~~e~~~L~l~d~~R~l~fkgil~ 566 (1029)
T KOG4305|consen 487 LLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQGSGEAENRCRLEELSQQLLFEPGEAVNLGLNDPERKLIFKGILK 566 (1029)
T ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChhhccchhhhhHHHHHHHhhccccccccccccChhhhcceeeeee
Confidence 999999999 5 67888999999999999999964321 111111 111222 23444455443
Q ss_pred EEeCC-CCeeE-EEEEccCCeEEEEEeeeCCCCCCCcceE-----------------------EeeeeeecceEEE--Ee
Q psy9950 499 VSQGK-GKKCL-RHVFLFEELILFSKARRFPDRKNLDLYI-----------------------YKHSMKMSDIGIT--AQ 551 (732)
Q Consensus 499 v~~~~-~kk~~-r~vFLF~D~LL~~K~kk~~~~~~~~~y~-----------------------~K~~i~l~~i~v~--e~ 551 (732)
-.... .+... -|.|||.|.+|++++.+... +....-+ |+.++++..+.+. +.
T Consensus 567 ~~~~~~~~~~~~~~~fLl~d~lLLt~~~k~~~-~~~~~kvf~RPiPl~lL~~~~~~dn~~~k~Y~sp~~~~~~~v~l~~~ 645 (1029)
T KOG4305|consen 567 RKELSKTDGTKEDYIFLLLDNLLLTRKVKQNN-KRHRHKVFSRPIPLDLLSLSPSEDNPSYKSYKSPIPLASVTVALPDK 645 (1029)
T ss_pred eccccccCCCccceeehhhhhhhhhhhhhhcc-ccccceeeccCcchhhhcccccccchhhhccCCCCcchhhhhhcccC
Confidence 22111 11122 58899999888887654322 2222333 4444444443322 11
Q ss_pred cCCCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHHHHHHHHhH
Q psy9950 552 IGDSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLLWKQALRNR 601 (732)
Q Consensus 552 ~~~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~q~~~~r 601 (732)
...+...|.+++ ...-+..|+|++.+..+++.|+++|.++-.....+++
T Consensus 646 ~~s~~~~~~~~~-~ga~~~~ftly~~s~~~r~~w~ekI~~aq~~~le~~~ 694 (1029)
T KOG4305|consen 646 PTSNVKNFFLYL-GGARGASFTLYAESLNGRDQWVEKIKQAQKRSLERND 694 (1029)
T ss_pred CCCCccchhhee-ccccceEEEeeccchHHhhhHHhhhhHHHHhhhhhhc
Confidence 111212233332 2445679999999999999999999988544444443
No 11
>KOG2070|consensus
Probab=99.95 E-value=1.8e-26 Score=246.37 Aligned_cols=285 Identities=22% Similarity=0.430 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCC---
Q psy9950 296 TQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLPL--- 372 (732)
Q Consensus 296 ~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~~--- 372 (732)
.+..|.-|++.||+||++|++.|..+...|+.||....+.. ..++..+.||+++|+.|| +.++..||+|.+.+.
T Consensus 98 ~~~Yr~vVLk~~lesEkey~~eLq~lL~t~L~Plq~s~iLs--~~ey~~LmgNfeeI~t~~-qdL~~qlEec~~~~~~q~ 174 (661)
T KOG2070|consen 98 NKSYRNVVLKNILESEKEYSKELQTLLSTYLRPLQTSEILS--SAEYSYLMGNFEEICTFQ-QDLVQQLEECTKLPEAQQ 174 (661)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc--hHHHHHHhcchHHhHhHH-HHHHHHHHHhhcCchhhh
Confidence 44678999999999999999999999999999999877765 468999999999999999 899999999998765
Q ss_pred chHHHHhhhhhhh-hhHHHhhhchHHHHHHHHHHhH---HHHHHHHHhhcCCCChhhhhhhhHhhHHhhHHHHHHHHhcC
Q psy9950 373 SVGQCFLNHENKF-YLYALYNKNKPKSDALMTEYGS---SFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLMKAS 448 (732)
Q Consensus 373 ~Ig~iFl~~~~~f-~~Y~~Y~~n~~~a~~~L~~~~~---~ffk~~~~~l~~~l~L~slLikPVQRI~rY~LLLkeLlK~T 448 (732)
+||.||+..++.| .+|..||.|+|.|...|.++.+ .|.+.......+-+-|..=|.+|.-|+-||.-||++|-++.
T Consensus 175 RVGg~fln~ap~mkt~~~aYcanHP~AV~VL~k~~dELek~me~Qgasspg~lvLttgLSkPfrrldkY~~lLQELERhm 254 (661)
T KOG2070|consen 175 RVGGCFLNLAPQMKTLYLAYCANHPSAVNVLTKHSDELEKFMETQGASSPGILVLTTGLSKPFRRLDKYPTLLQELERHM 254 (661)
T ss_pred hhhhHHHhhhHHHHHHHHHHHhcCchhhhHHHHhHHHHHHHHHhcCCCCCCeEEEecccchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 7999999999999999998863 44444444445567788889999999999999999999999
Q ss_pred c---ccHHHHHHHHHHHHHHhhhhhhHhhhh---------hhcccccc-ccccccccccccEEEEeCCCCeeEEEEEccC
Q psy9950 449 R---QDVKDIKEAESMVRFQLRHGNDLLAMD---------SLRECDVN-LKEQGRLLRQNEFIVSQGKGKKCLRHVFLFE 515 (732)
Q Consensus 449 ~---~d~~dL~~Al~~v~~~~~~iNd~~~~~---------~i~~~~~~-L~~~grll~~g~l~v~~~~~kk~~r~vFLF~ 515 (732)
+ +|+.|++.+..+.+++...+.++.+.+ .|+++.+. +...|.+|..|.+.|..+....++||+.||.
T Consensus 255 e~~HpDrgD~qrs~avfk~~~~~Cq~lRkqKEleLqiLt~~i~~w~g~d~s~lG~iiymg~v~Vqy~~ad~~dRy~~LF~ 334 (661)
T KOG2070|consen 255 EDYHPDRGDIQRSMAVFKNLSAQCQELRKQKELELQILTEPIRNWEGDDISTLGNIIYMGQVLVQYAGADEKDRYLLLFP 334 (661)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccchhhhccceEeeeehhhhhcCcchhhheeeecc
Confidence 8 899999999999998887777765543 34455444 8888999999999886665344599999999
Q ss_pred CeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC--CCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHH
Q psy9950 516 ELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD--SSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSN 591 (732)
Q Consensus 516 D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~--~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ 591 (732)
.+|||....+ ....|+|.+.|+++.+.|+...+. ..+.|+|. ...-+.+...|..+.+-++|++.++.
T Consensus 335 ~~llflsvs~-----rMs~fIyegKlp~tG~iV~klEdte~~~nafeis---~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 335 NVLLFLSVSP-----RMSGFIYEGKLPTTGMIVTKLEDTENHRNAFEIS---GSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred ceeeeeEecc-----ccchhhhccccccceeEEeehhhhhccccccccc---ccchhheeeccCChHHHHHHHHHhhh
Confidence 9999987652 456899999999999988865433 34567764 23346788999999999999999975
No 12
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.95 E-value=6.3e-27 Score=231.53 Aligned_cols=166 Identities=36% Similarity=0.614 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC----CchHHH
Q psy9950 303 IMREMIQTERDYVKSLEYVILNYIPELTRED-IPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLP----LSVGQC 377 (732)
Q Consensus 303 iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~-~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~----~~Ig~i 377 (732)
||+||++||+.||++|+.+.+.|+.||.... +.. ..++..||+||++|+.+| ..|+.+|+++..++ ..||++
T Consensus 1 ii~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~--~~~~~~iF~~i~~i~~~h-~~~l~~l~~~~~~~~~~~~~i~~~ 77 (180)
T smart00325 1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLLS--PNELETLFGNIEEIYEFH-RDFLDELEERIEEWDDSPERIGDV 77 (180)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHhcCHHHHHHHH-HHHHHHHHHHHhcccccccHHHHH
Confidence 6899999999999999999999999999764 222 478999999999999999 69999999998764 589999
Q ss_pred HhhhhhhhhhHHHhhhchHHHHHHHHHHh-----HHHHHHHHHh-hcCCCChhhhhhhhHhhHHhhHHHHHHHHhcCc--
Q psy9950 378 FLNHENKFYLYALYNKNKPKSDALMTEYG-----SSFFKAKQLE-LADRMDLASYLLKPVQRMGKYALLLQQLMKASR-- 449 (732)
Q Consensus 378 Fl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~-----~~ffk~~~~~-l~~~l~L~slLikPVQRI~rY~LLLkeLlK~T~-- 449 (732)
|+++.+.|..|..||.+++.+.+.+..+. ..|++.+... .+.+++|.+||++|||||+||+|||++|+|+|+
T Consensus 78 f~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~lll~~l~k~t~~~ 157 (180)
T smart00325 78 FLKLEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCRRLTLESLLLKPVQRLTKYPLLLKELLKHTPED 157 (180)
T ss_pred HHHhhHHHHHHHHHHHhHHHHHHHHHHhhcChhHHHHHHHHhCChhhccCCHHHHHhHHHHHhccHHHHHHHHHHhCCCC
Confidence 99998888999999999999999998843 3445544432 245689999999999999999999999999999
Q ss_pred -ccHHHHHHHHHHHHHHhhhhhh
Q psy9950 450 -QDVKDIKEAESMVRFQLRHGND 471 (732)
Q Consensus 450 -~d~~dL~~Al~~v~~~~~~iNd 471 (732)
+|+..|++|++.++.++.++|+
T Consensus 158 ~~d~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 158 HEDREDLKKALKAIKELANQVNE 180 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCC
Confidence 6778899999999999999996
No 13
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.92 E-value=4.1e-24 Score=210.23 Aligned_cols=166 Identities=31% Similarity=0.551 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC---CchHHHH
Q psy9950 303 IMREMIQTERDYVKSLEYVILNYIPELTR-EDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLP---LSVGQCF 378 (732)
Q Consensus 303 iI~ELi~TE~~YV~~L~~l~~~y~~pL~~-~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~---~~Ig~iF 378 (732)
||+||++||+.||++|+.+.+.|+.+|.. ..... ..++..||+|+++|+++| +.|+..|+.....+ ..||++|
T Consensus 1 vi~ELi~tE~~y~~~L~~l~~~~~~~l~~~~~~l~--~~~~~~lf~~i~~l~~~h-~~ll~~L~~~~~~~~~~~~i~~if 77 (180)
T PF00621_consen 1 VINELIETERSYVEDLEILVEVFLKPLRKRSPLLS--EDEIKSLFGNIEELIEIH-QQLLESLEERMKEWSNIQSIGDIF 77 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTSSH--HHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHTTSSGGGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC--HHHHHHHhcchhhhhhHH-HHHHHHHHHHHHhhhccchhhhhh
Confidence 79999999999999999999999999987 44333 366899999999999999 79999999975443 4899999
Q ss_pred hhhhhhhhhHHHhhhchHHHHHHHHHHh------HHHHHHHHH-hhcCCCChhhhhhhhHhhHHhhHHHHHHHHhcCc--
Q psy9950 379 LNHENKFYLYALYNKNKPKSDALMTEYG------SSFFKAKQL-ELADRMDLASYLLKPVQRMGKYALLLQQLMKASR-- 449 (732)
Q Consensus 379 l~~~~~f~~Y~~Y~~n~~~a~~~L~~~~------~~ffk~~~~-~l~~~l~L~slLikPVQRI~rY~LLLkeLlK~T~-- 449 (732)
+++.+.+..|..||.+++.+...++.+. ..|++.... .....+++.+||++|+|||+||+++|++|+++|+
T Consensus 78 ~~~~~~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~~~ 157 (180)
T PF00621_consen 78 LKFEPFLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSPESKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTPPD 157 (180)
T ss_dssp HHHTTGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHCTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred hhccccccceeccchheechhhhhhHHHhhccccccccccccccccccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCCCC
Confidence 9977777999999999999999998765 234444443 3457889999999999999999999999999999
Q ss_pred -ccHHHHHHHHHHHHHHhhhhhh
Q psy9950 450 -QDVKDIKEAESMVRFQLRHGND 471 (732)
Q Consensus 450 -~d~~dL~~Al~~v~~~~~~iNd 471 (732)
+|+..|+.|+..++.+..++|+
T Consensus 158 ~~d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 158 HPDYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCc
Confidence 4667799999999999999985
No 14
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-22 Score=225.00 Aligned_cols=294 Identities=23% Similarity=0.360 Sum_probs=218.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-Cchhhh-hhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC
Q psy9950 294 LKTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTRED-IPQALR-GQRNVIFGNIEKIYEFHSQHFLGELEQCANLP 371 (732)
Q Consensus 294 ~k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~-~p~~l~-~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~ 371 (732)
++++.|||.+|.|++-||++||++|+++.+.|++||.... +|...+ +.+..+|.||-+|+.++ ..|++.|..++...
T Consensus 479 ~~qe~kRqe~I~evi~ter~FVk~le~lRD~~~K~L~~sn~Ip~n~r~~Fik~vf~~i~~i~avn-~k~~~AL~~rQ~ls 557 (1175)
T COG5422 479 PKQEIKRQEAIYEVIYTERDFVKDLEYLRDTWIKPLEESNIIPENARRNFIKHVFANINEIYAVN-SKLLKALTNRQCLS 557 (1175)
T ss_pred cHHHHhhhhhhhheeeeccchhhhhHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHHHhh-HHHHHHHhhccccc
Confidence 6788999999999999999999999999999999998655 666654 56999999999999999 59999999887643
Q ss_pred ---CchHHHHhhhhhhhhhHHHhhhchHHHHHHHHHHh---HHHHHH--HHH--hhcCCCChhhhhhhhHhhHHhhHHHH
Q psy9950 372 ---LSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYG---SSFFKA--KQL--ELADRMDLASYLLKPVQRMGKYALLL 441 (732)
Q Consensus 372 ---~~Ig~iFl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~---~~ffk~--~~~--~l~~~l~L~slLikPVQRI~rY~LLL 441 (732)
..|||+|+.|.+.|+.+..|.++.+.|...++..+ ..|++. ... ....++.+..||-+|+-|++||+||+
T Consensus 558 Piv~~I~DifL~~vP~Fepfiky~a~~~yaky~~erekS~np~fa~Fd~~v~rl~~s~k~~ld~yLtk~~tr~~Ry~lL~ 637 (1175)
T COG5422 558 PIVNGIADIFLDYVPKFEPFIKYGASQPYAKYEFEREKSVNPNFARFDHEVERLDESRKLELDGYLTKPTTRLARYPLLL 637 (1175)
T ss_pred ccccchHHHHHhhhhhhhHHHHhhcccchhheeeeeccccCcchhhhhHHHHhcchhhhhcccceecCCcccchhhHHHH
Confidence 48999999999999999999999999998887765 233322 122 34567899999999999999999999
Q ss_pred HHHHhcCcc---cHHHHHHHHHHHHHHhhhhhhHhh-------hhhh--------cccccc-ccccccccccccEEEEeC
Q psy9950 442 QQLMKASRQ---DVKDIKEAESMVRFQLRHGNDLLA-------MDSL--------RECDVN-LKEQGRLLRQNEFIVSQG 502 (732)
Q Consensus 442 keLlK~T~~---d~~dL~~Al~~v~~~~~~iNd~~~-------~~~i--------~~~~~~-L~~~grll~~g~l~v~~~ 502 (732)
++++|+|.+ |+++|-++++|++++..++|-.-. +..+ +-.+.. ..+.+.++..|.+.+...
T Consensus 638 e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~~~~l~qql~fk~e~~~lgl~D~~rkii~kgvlk~ka~ 717 (1175)
T COG5422 638 EEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDLFHLNQQLLFKPEYVNLGLNDEYRKIIFKGVLKRKAK 717 (1175)
T ss_pred hhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhhcccccchhhhhhhhhhccCchhhcccccchhHHHHHhhhhhhhhh
Confidence 999999985 555566999999999888874211 0000 111122 234566777887766433
Q ss_pred C---C-CeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecC---------CC--------------
Q psy9950 503 K---G-KKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIG---------DS-------------- 555 (732)
Q Consensus 503 ~---~-kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~---------~~-------------- 555 (732)
. + -..+.++|||+.++|+||.|... +....-++..+||+.-+-+....+ +.
T Consensus 718 ~~td~s~~~di~f~llDn~ll~~Kak~vn--kw~~hkvfqrpipl~ll~i~~~eDsp~~~~y~~~~~s~~~l~pa~nt~~ 795 (1175)
T COG5422 718 SKTDGSLRGDIQFFLLDNMLLFCKAKAVN--KWRQHKVFQRPIPLELLFISPDEDSPDRAEYLKPAPSADVLDPAYNTKP 795 (1175)
T ss_pred ccCCcccccceeeeehhhHHHHhcccchh--hhhhceeecCCCcchhhccccccCCchhhhccCCCCcccccChhhhcCC
Confidence 2 1 23378999999999999988531 122234556677765443321100 00
Q ss_pred -C--CcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 556 -S--TKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 556 -~--~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
. ..|+.. ..+..+.++|+|.+..-++.|++.|.+.
T Consensus 796 P~~a~~F~~~--~~~~ry~itlYa~~~~g~d~~lE~i~nq 833 (1175)
T COG5422 796 PKNAYGFELY--GNGQRYQITLYAETHAGRDTWLEHIKNQ 833 (1175)
T ss_pred ccccceeeee--cccccccccccccccchHHHHHHhhhhh
Confidence 0 114443 3445589999999999999999999774
No 15
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.86 E-value=2.7e-21 Score=176.77 Aligned_cols=108 Identities=31% Similarity=0.555 Sum_probs=97.3
Q ss_pred ccccccccccEEEEeCC----CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEEE
Q psy9950 487 EQGRLLRQNEFIVSQGK----GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIW 562 (732)
Q Consensus 487 ~~grll~~g~l~v~~~~----~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~ 562 (732)
++|+||+||.|+||.++ .|+++||||||+++|||||+++.+...+...|+||..|+++++++++.+++++++|+||
T Consensus 1 ~qG~Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~ 80 (114)
T cd01232 1 AQGKLLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALW 80 (114)
T ss_pred CCCceEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCCCceEEEE
Confidence 47999999999999987 36789999999999999999765444467899999999999999999999999999999
Q ss_pred EeecC-CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q psy9950 563 FRKRK-PNETFTLQSMSEDIKQAWTDELSNLLW 594 (732)
Q Consensus 563 ~~~~~-~~~~~~L~A~S~eeK~~Wi~~I~~~i~ 594 (732)
++.+. +.++|+|+|+|.++|+.|+++|+++++
T Consensus 81 ~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 81 SGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred eCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 98765 668999999999999999999999874
No 16
>KOG3522|consensus
Probab=99.86 E-value=2.4e-21 Score=219.31 Aligned_cols=235 Identities=22% Similarity=0.303 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCC---chHH
Q psy9950 300 LLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLPL---SVGQ 376 (732)
Q Consensus 300 Rq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~~---~Ig~ 376 (732)
|.+++.+|+.+|++||..|+.+++.|++||.......+ ...++.||.||.+|+++| ..||..|+.+..+|. .+|+
T Consensus 1 r~~v~~~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~~-~~~~~eif~~i~ell~~h-e~fl~~l~s~~~~w~~qq~vga 78 (925)
T KOG3522|consen 1 RRYVLLQLIDREQSYVESLHTGVDRYVQPLKERKVLID-PRDVDEIFQNIPELLEIH-EDFLEQLCSRDQQWDEQQKVGA 78 (925)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhccccccccccC-CchHHHHHHhhHHHHHHH-HHHHHHHHhhhhhhHHHHHHHH
Confidence 56789999999999999999999999999987333222 357899999999999999 799999999998874 8999
Q ss_pred HHhhhhhh---hhhHHHhhhchHHHHHHHHHHh-HHHHHHHHHhhcCCCChhhhhhhhHhhHHhhHHHHHHHHhcCc---
Q psy9950 377 CFLNHENK---FYLYALYNKNKPKSDALMTEYG-SSFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQLMKASR--- 449 (732)
Q Consensus 377 iFl~~~~~---f~~Y~~Y~~n~~~a~~~L~~~~-~~ffk~~~~~l~~~l~L~slLikPVQRI~rY~LLLkeLlK~T~--- 449 (732)
.|..++.. +.+|..||+|+..|...+.... .+|.+... ++++| |+|+|.|||+ |+||||
T Consensus 79 ~~v~~fSk~~v~~~Y~~y~nn~~~A~~~l~~~~rpaf~~Fl~-----------l~~kP--r~P~y~lll~-mlkhtp~~H 144 (925)
T KOG3522|consen 79 SFVYSFSKTAVLAAYSKYVNNFKRAKCALRNKKRPAFSKFLE-----------LMIKP--RFPRYELLLQ-MLKHTPLDH 144 (925)
T ss_pred HHHHhhhHHHHHHHHHHHHhchhHHHHHHHHhcchHHHHHHH-----------HHhcc--CCchHHHHHH-HhhcCCcCC
Confidence 99988754 3899999999999999998765 44444433 99999 9999999999 999999
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhHhhh-----------hhhccc---cccc-cccccccccccEEEEeCCCCeeEEEEEcc
Q psy9950 450 QDVKDIKEAESMVRFQLRHGNDLLAM-----------DSLREC---DVNL-KEQGRLLRQNEFIVSQGKGKKCLRHVFLF 514 (732)
Q Consensus 450 ~d~~dL~~Al~~v~~~~~~iNd~~~~-----------~~i~~~---~~~L-~~~grll~~g~l~v~~~~~kk~~r~vFLF 514 (732)
+|+.-|+.|+..+..++.++|+.... ..|+.. ...| ...+++++++.+......+.++++-.|+|
T Consensus 145 pdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~el~e~L~ag~r~lLl~dl~se~vy~~rk~d~~~~~~ 224 (925)
T KOG3522|consen 145 PDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVRSELMEDLGAGRRQLLLQDLVSETVYTGRKKDRKAFLF 224 (925)
T ss_pred CchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHhhhhhhccccchhhheee
Confidence 45566999999999999888875432 122211 1122 34567778776654333457789999999
Q ss_pred CCeEEEEEeeeCCCCCCCc----------ceEEeeeeeecceEEEE
Q psy9950 515 EELILFSKARRFPDRKNLD----------LYIYKHSMKMSDIGITA 550 (732)
Q Consensus 515 ~D~LL~~K~kk~~~~~~~~----------~y~~K~~i~l~~i~v~e 550 (732)
+|.|+.++.++........ +|.+++.+++....+.+
T Consensus 225 rd~i~~~~Lk~~sg~~r~~~t~as~vdt~ky~~lw~~~L~~~~vvk 270 (925)
T KOG3522|consen 225 RDLIVNTDLKRASGSSRKPSTAASVVDTAKYKLLWKDPLVFADVVK 270 (925)
T ss_pred eeeeeeeeeeeeeceecCCccccccccccceeeeeccccchhheee
Confidence 9999998876543333333 79999999998877665
No 17
>KOG3519|consensus
Probab=99.82 E-value=7.5e-20 Score=217.21 Aligned_cols=229 Identities=27% Similarity=0.439 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC---
Q psy9950 295 KTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLP--- 371 (732)
Q Consensus 295 k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~--- 371 (732)
....+|..+|.|+++||+.||++|..+.+.|+.++.+. .-....+++..+|+||++|+.|| ..||+.|+.+....
T Consensus 332 ~~~~~~~~vi~E~l~tE~~Yv~~L~~~~~~yl~~~~k~-~~~~~~~~~~~~f~ni~~i~~f~-~~fl~~L~~~~~~~~~~ 409 (756)
T KOG3519|consen 332 SLDKKRTKVIKELLDTEKNYVKDLNALCEGYLPPQNKR-ARGLSVNQLDLLFGNIEDILRFQ-KEFLKTLEQQINPELIP 409 (756)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhh-hccccHHHHHHHccCHHHHHHHH-HHHHHHHHHhcchhhcc
Confidence 45688999999999999999999999999999996422 12223477899999999999999 79999999998633
Q ss_pred ---CchHHHHhhhhhhhhhHHHhhhchHHHHHHHHHHh-----HHHHHHHHHhhcC-CCChhhhhhhhHhhHHhhHHHHH
Q psy9950 372 ---LSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYG-----SSFFKAKQLELAD-RMDLASYLLKPVQRMGKYALLLQ 442 (732)
Q Consensus 372 ---~~Ig~iFl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~-----~~ffk~~~~~l~~-~l~L~slLikPVQRI~rY~LLLk 442 (732)
..||.+|+.+.+.|.+|..||++++.+...+..+. ..|+..+...... ..+|.+||++|||||.||+|||+
T Consensus 410 ~~~~~ig~~fL~~~~~f~~ys~yc~~h~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~L~s~l~~pvqri~kYPLll~ 489 (756)
T KOG3519|consen 410 PSLSEIGPVFLEQLDVFKIYSEYCNNHPKAQKKLSKLKKKKKVKEFLEACNLLQQHSNSSLSSFLLKPVQRICKYPLLLN 489 (756)
T ss_pred hhHhHHHHHHHHhcccceeechhhhccchHHHHHHHHhhhhhhhhhhhhhhhhhccccCCchhhhccHHHHhccCchhhh
Confidence 48999999999999999999999999999998886 4666666543322 28999999999999999999999
Q ss_pred HHHhcCc---ccHHHHHHHHHHHHHHhhhhhhHhhhh--------hhcccccc----ccccccccc--------cccEEE
Q psy9950 443 QLMKASR---QDVKDIKEAESMVRFQLRHGNDLLAMD--------SLRECDVN----LKEQGRLLR--------QNEFIV 499 (732)
Q Consensus 443 eLlK~T~---~d~~dL~~Al~~v~~~~~~iNd~~~~~--------~i~~~~~~----L~~~grll~--------~g~l~v 499 (732)
++++.|+ .||..+.+|+.+++.+...||+..... .+...... ..-.|++++ .+....
T Consensus 490 elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~Ss~l~~~~~~~~ 569 (756)
T KOG3519|consen 490 ELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYSSFLDKIAAEQSGSNSLELSEGELLLDNSSELLLSGPSLK 569 (756)
T ss_pred hhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchhHHHHHhhhhhccchhhhccCCCcccccccceeeccchhh
Confidence 9999998 577889999999999999999865421 11111111 111233332 222221
Q ss_pred Ee-CCCCeeEEEEEccCCeEEEEEeee
Q psy9950 500 SQ-GKGKKCLRHVFLFEELILFSKARR 525 (732)
Q Consensus 500 ~~-~~~kk~~r~vFLF~D~LL~~K~kk 525 (732)
.. ..+....++.|||+..+++||...
T Consensus 570 ~~q~~~~~~~~~~~l~~~~~~~c~~~~ 596 (756)
T KOG3519|consen 570 IRQFQSDSQQRQFFLFDNQLVYCKRSS 596 (756)
T ss_pred hhhhhcchhhhhheecccceeEeeccc
Confidence 11 112346789999999999999764
No 18
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.82 E-value=1.2e-19 Score=169.54 Aligned_cols=111 Identities=35% Similarity=0.608 Sum_probs=96.9
Q ss_pred ccccccccEEEEeCC-----------CCeeEEEEEccCCeEEEEEeeeCCC-CCCCcceEEeeeeeecceEEEEecCCCC
Q psy9950 489 GRLLRQNEFIVSQGK-----------GKKCLRHVFLFEELILFSKARRFPD-RKNLDLYIYKHSMKMSDIGITAQIGDSS 556 (732)
Q Consensus 489 grll~~g~l~v~~~~-----------~kk~~r~vFLF~D~LL~~K~kk~~~-~~~~~~y~~K~~i~l~~i~v~e~~~~~~ 556 (732)
|+||+||.|+||++. .|+++||||||+.+|||||+++.++ ..+...|.||..|+|+++++++++++++
T Consensus 1 G~ll~Qd~f~Vw~~~~~~~~~k~~~r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~ 80 (133)
T cd01227 1 GKLLMQGSFSVWTDHKKGHTKKELARFKPMQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDT 80 (133)
T ss_pred CCceEecceEEEEccccccchhhhhccCCceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCc
Confidence 789999999999874 2567999999999999999885332 2356789999999999999999999999
Q ss_pred CcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHHHHHHHHhH
Q psy9950 557 TKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLLWKQALRNR 601 (732)
Q Consensus 557 ~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~q~~~~r 601 (732)
++|+||++. +.+.|+|+|+|++.|+.|+++|+++||+|+..-+
T Consensus 81 ~kFeiw~~~--~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~~~lk 123 (133)
T cd01227 81 KKFEIWYNA--REEVYILQAPTPEIKAAWVNEIRKVLTSQLQACK 123 (133)
T ss_pred cEEEEEeCC--CCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999964 4689999999999999999999999999865444
No 19
>KOG3524|consensus
Probab=99.79 E-value=3.1e-19 Score=198.35 Aligned_cols=290 Identities=20% Similarity=0.274 Sum_probs=213.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9950 294 LKTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELT---REDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANL 370 (732)
Q Consensus 294 ~k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~---~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~ 370 (732)
.++.+.|-.+-.++..||..||.-|+.+++.|..+|. ....|..-++++..||+|+++|..+| +.....|.+...+
T Consensus 379 psk~s~r~~~~~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh-~k~~D~l~~l~~n 457 (850)
T KOG3524|consen 379 PSKLSLRVKFKEALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVH-KKNDDKLLDLAQN 457 (850)
T ss_pred chhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhh-ccchHHHHHHHHh
Confidence 4556678889999999999999999999999988876 33455555789999999999999999 7999999888877
Q ss_pred CCchHHHHhhhhhhh-hhHHHhhhchHHHHHHHHHHh------HHHHHHHHH-hhcCCCChhhhhhhhHhhHHhhHHHHH
Q psy9950 371 PLSVGQCFLNHENKF-YLYALYNKNKPKSDALMTEYG------SSFFKAKQL-ELADRMDLASYLLKPVQRMGKYALLLQ 442 (732)
Q Consensus 371 ~~~Ig~iFl~~~~~f-~~Y~~Y~~n~~~a~~~L~~~~------~~ffk~~~~-~l~~~l~L~slLikPVQRI~rY~LLLk 442 (732)
|...- +.+ +.|-.|++-++.....++.+- .+|.+..+. ..++++.|.+++++||||++--.|||+
T Consensus 458 w~e~k-------~el~kayppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlpsvillln 530 (850)
T KOG3524|consen 458 WIEAK-------EELKKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVILLLN 530 (850)
T ss_pred hHHHH-------HHHHHhccchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhHHHHHHH
Confidence 74333 233 667777777777777776653 455555543 358899999999999999999999999
Q ss_pred HHHhcCc-ccHHHHHHHHHHHHHHhhhhhhHhh-----------hhhhccccccccc-cccccccccEE--EEe-CCCCe
Q psy9950 443 QLMKASR-QDVKDIKEAESMVRFQLRHGNDLLA-----------MDSLRECDVNLKE-QGRLLRQNEFI--VSQ-GKGKK 506 (732)
Q Consensus 443 eLlK~T~-~d~~dL~~Al~~v~~~~~~iNd~~~-----------~~~i~~~~~~L~~-~grll~~g~l~--v~~-~~~kk 506 (732)
+|.|... +++..+++|...++.+..+||+... ...|++|+..|.+ .|-++..=+.. +.. +-++.
T Consensus 531 dl~k~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~diegcpa~lvssnrsfi~~lev~i~l~~~~~~rg 610 (850)
T KOG3524|consen 531 DMAKKSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGCPAILVSSNRSFIRELEVSIALTSPGLQRG 610 (850)
T ss_pred HHHhhccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcCchhheeccchHHHHhhhhhhhcCcccccc
Confidence 9999444 7899999999999999999998543 3567888777654 44454433321 111 11455
Q ss_pred eEEEEEccCCeEEEEEeee-------CCCCCCCcceEEeeeeeecceEEEEe---cCCCCCcEEEEEeecCCCeE--EEE
Q psy9950 507 CLRHVFLFEELILFSKARR-------FPDRKNLDLYIYKHSMKMSDIGITAQ---IGDSSTKFEIWFRKRKPNET--FTL 574 (732)
Q Consensus 507 ~~r~vFLF~D~LL~~K~kk-------~~~~~~~~~y~~K~~i~l~~i~v~e~---~~~~~~~F~I~~~~~~~~~~--~~L 574 (732)
....+|||+|+++|||.+- .+.+.....|.+-..|+|+.|...-. .++.++.|.+.++.++.+-. ..|
T Consensus 611 ~~~~l~lf~dvlei~k~r~~~~~tF~S~hs~tr~p~KhI~li~LntIr~V~dIrE~~~cpnAF~lllr~~~EQ~~v~~~F 690 (850)
T KOG3524|consen 611 AKMKLFLFHDVLEITKIRLARHASFASLHSRQRRPYKHIDLIQLNTIRSVFDIREIAKCPNAFVLLLRHRDEQGGIDTVF 690 (850)
T ss_pred cceeeehhhhHHHHHHHhHhhhccccCCCCCCCCcccceeeccHHHHHHHhhhhhhccCccceEEEEeCchhhcCeeEEE
Confidence 6788999999999999761 11222223477777888887753322 24568899998887654433 347
Q ss_pred EcCCHH-HHH-HHHHHHHH
Q psy9950 575 QSMSED-IKQ-AWTDELSN 591 (732)
Q Consensus 575 ~A~S~e-eK~-~Wi~~I~~ 591 (732)
+..+.| -++ .|++.|..
T Consensus 691 q~tdDE~p~e~~y~K~LC~ 709 (850)
T KOG3524|consen 691 ESNDDEDPSDMRYFKNLCG 709 (850)
T ss_pred EecccccchhhHHHHHHhh
Confidence 777766 444 49999983
No 20
>KOG3531|consensus
Probab=99.72 E-value=2.8e-18 Score=193.62 Aligned_cols=279 Identities=18% Similarity=0.315 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC---------
Q psy9950 301 LFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANLP--------- 371 (732)
Q Consensus 301 q~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~~--------- 371 (732)
..+++||..||+.|.++|+.+...|...+-..+..+ ......+|.|++-|.++| +.||++++.++..|
T Consensus 535 yF~~kel~~tERty~kdleV~tt~Frst~v~~dam~--~~~~s~l~~~~~pl~k~h-~~fLk~ieeria~weGrsnani~ 611 (1036)
T KOG3531|consen 535 YFIVKELSDTERTYLKDLEVITTWFRSTVVKEDAMP--NALKSLLFHNSTPLTKFH-EGFLKEIEERIALWEGRSNANIV 611 (1036)
T ss_pred eeeecccccccccchhccceeeeeecceeecCcccc--cchhhhhccCCChhhHHH-HHHHHHHHHHHHhccCCCCCcee
Confidence 578999999999999999999877776665544332 134678999999999999 79999999998755
Q ss_pred --CchHHHHhhhhhhhhhHHHhhhchHHHHHHHHHHh------HHHHHHHHHhhcCCCChhhhhhhhHhhHHhhHHHHHH
Q psy9950 372 --LSVGQCFLNHENKFYLYALYNKNKPKSDALMTEYG------SSFFKAKQLELADRMDLASYLLKPVQRMGKYALLLQQ 443 (732)
Q Consensus 372 --~~Ig~iFl~~~~~f~~Y~~Y~~n~~~a~~~L~~~~------~~ffk~~~~~l~~~l~L~slLikPVQRI~rY~LLLke 443 (732)
.+|||+.++++..+++|..|...+......++.-. .++++.........+.+..||.+|++|+..|.++|+.
T Consensus 612 ~~~~igDVmLk~m~~l~i~~~~~q~h~~~l~~~t~~~k~~~r~~~v~kefelqkvcyLP~~~fllkpL~rllhyq~~LeR 691 (1036)
T KOG3531|consen 612 IEQRIGDVMLKNMRSLKITTTTTQRHAETLTTLTTTSKVLTRLEAVYKEFELQKVCYLPLNTFLLKPLSRLLHYQLALER 691 (1036)
T ss_pred eeeccCCcchhhhhccchhhhhHHhHHHHHHHHhhcchhhhhHHhhhccHHhhhccccccchhhhccccHHHHHHHHHHH
Confidence 25999999999999999999999999888887543 2334444444556789999999999999999999999
Q ss_pred HHhcCcccHHHHHHHHHHHHHHhhh----------hhhHhhh-hhhccccccccccccccccccEEEEeCCCCeeEEEEE
Q psy9950 444 LMKASRQDVKDIKEAESMVRFQLRH----------GNDLLAM-DSLRECDVNLKEQGRLLRQNEFIVSQGKGKKCLRHVF 512 (732)
Q Consensus 444 LlK~T~~d~~dL~~Al~~v~~~~~~----------iNd~~~~-~~i~~~~~~L~~~grll~~g~l~v~~~~~kk~~r~vF 512 (732)
|..+-+++|.+++++..+..-+.+. +..+..+ ..+.+....+...++++++|.+....++ +-++|.+|
T Consensus 692 Lc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m~~~e~l~Elkrdl~s~e~LV~p~rE~ir~g~llK~skk-gLqqrmfF 770 (1036)
T KOG3531|consen 692 LCGHYSPTHEDFADCKAKPNPITEPTKPLQSVMIRTEKLRELKRDLASIENLVHPGREFIRSGCLLKLSKK-GLQQRMFF 770 (1036)
T ss_pred hhcccCCCccchHHHhhcccccccccccccccchhHHHHHHHHHhhhccccccCcchhhhhcCCchhhccc-cchhhhhh
Confidence 9999998888887765543322211 1111111 1233344556777889999999887766 56789999
Q ss_pred ccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC---CCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHH
Q psy9950 513 LFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD---SSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDEL 589 (732)
Q Consensus 513 LF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~---~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I 589 (732)
||+|++|++.+.- .....|.+...+|+. +.+. +.++ -+++|.| ...+..++..|++.++.++|..++
T Consensus 771 Lfsdillytsk~~----~~~~~fri~g~lP~~-l~~e-n~en~~s~p~~~ti----~~~qk~i~vsast~~~sk~~~~~r 840 (1036)
T KOG3531|consen 771 LFSDILLYTSKGP----DVQKCFRINGDLPLT-LTME-NSENEWSVPHCFTI----SGAQKQIYVSASTRRESKKWEFDR 840 (1036)
T ss_pred hhhhhheeccCCC----ChhheeEeccCCceE-eeee-cccccccCCceEEE----eccceEEEEeccchhhhhhhhhcc
Confidence 9999999997541 234578899999998 5444 3333 2466665 366789999999999999999999
Q ss_pred HHHH
Q psy9950 590 SNLL 593 (732)
Q Consensus 590 ~~~i 593 (732)
+.+|
T Consensus 841 ~~~i 844 (1036)
T KOG3531|consen 841 RKAI 844 (1036)
T ss_pred chhh
Confidence 9887
No 21
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.64 E-value=2e-15 Score=134.32 Aligned_cols=95 Identities=23% Similarity=0.431 Sum_probs=83.5
Q ss_pred cccccccccEEEEeCCCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEEEEeecC
Q psy9950 488 QGRLLRQNEFIVSQGKGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRK 567 (732)
Q Consensus 488 ~grll~~g~l~v~~~~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~ 567 (732)
.|.||++|.|.++.. +++||||||+++|||||+++ ..|.||..|.++++.|++++.+++++|.|+.. ..
T Consensus 1 ~geLlleg~l~~~~~---~~eR~vFLFe~~ll~~K~~~-------~~y~~K~~i~~~~l~i~e~~~~d~~~F~v~~~-~~ 69 (97)
T cd01222 1 LGDLLLEGRFREHGG---GKPRLLFLFQTMLLIAKPRG-------DKYQFKAYIPCKNLMLVEHLPGEPLCFRVIPF-DD 69 (97)
T ss_pred CCceeeeceEEeecC---CCceEEEEecccEEEEEecC-------CeeEEEEEEEecceEEecCCCCCCcEEEEEec-CC
Confidence 488999999997653 46899999999999999863 26999999999999999999988999999654 24
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 568 PNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 568 ~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
+...|+|+|+|.++|+.|+++|+++|
T Consensus 70 p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 70 PKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CceEEEEEecCHHHHHHHHHHHHHHh
Confidence 55799999999999999999999987
No 22
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.50 E-value=2.7e-13 Score=121.62 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=80.0
Q ss_pred cccccccEEEEeCCCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC--CCCcEEEEEeecC
Q psy9950 490 RLLRQNEFIVSQGKGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD--SSTKFEIWFRKRK 567 (732)
Q Consensus 490 rll~~g~l~v~~~~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~--~~~~F~I~~~~~~ 567 (732)
++|++|.++...++ ..++|++|||||+||+|.+.. .+...|.++..|+|.++.|.+..++ .++.|.|. +
T Consensus 1 ~~ikEG~L~K~~~k-~~~~R~~FLFnD~LlY~~~~~----~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~----~ 71 (99)
T cd01220 1 EFIRQGCLLKLSKK-GLQQRMFFLFSDLLLYTSKSP----TDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIF----G 71 (99)
T ss_pred CeeeEEEEEEEeCC-CCceEEEEEccceEEEEEeec----CCCceEEEEEEEEcCceEEeeccCCcCCceeEEEE----c
Confidence 47899999987777 578899999999999998863 2334689999999999998875542 35677775 6
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q psy9950 568 PNETFTLQSMSEDIKQAWTDELSNLLW 594 (732)
Q Consensus 568 ~~~~~~L~A~S~eeK~~Wi~~I~~~i~ 594 (732)
++++|+|+|+|+++|..|+++|+++|.
T Consensus 72 ~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 72 GQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999973
No 23
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=6.7e-13 Score=121.05 Aligned_cols=102 Identities=22% Similarity=0.342 Sum_probs=80.0
Q ss_pred ccccccccEEEEeC-CCCeeEEEEEccCCeEEEEEeeeCC---CCCCCcceEEeeeeeecceEEEEecCCC--CCcEEEE
Q psy9950 489 GRLLRQNEFIVSQG-KGKKCLRHVFLFEELILFSKARRFP---DRKNLDLYIYKHSMKMSDIGITAQIGDS--STKFEIW 562 (732)
Q Consensus 489 grll~~g~l~v~~~-~~kk~~r~vFLF~D~LL~~K~kk~~---~~~~~~~y~~K~~i~l~~i~v~e~~~~~--~~~F~I~ 562 (732)
.+||++|.++.... +++.++||+|||||+||+||++... .+.....|.||..|.|..+.|.+..+.+ .+.|.|.
T Consensus 2 ~elI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~ 81 (112)
T cd01261 2 NEFIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEII 81 (112)
T ss_pred ccccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEE
Confidence 46899999987654 3577899999999999999985321 1112237999999999999999776555 4667775
Q ss_pred EeecCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 563 FRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 563 ~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
- ..+.+++|+|.|+++|+.|+++|..++
T Consensus 82 ~---~~~~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 82 L---KDGNSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred c---CCCCEEEEEECCHHHHHHHHHHHHHHh
Confidence 2 235689999999999999999999886
No 24
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.43 E-value=1.4e-12 Score=117.69 Aligned_cols=98 Identities=16% Similarity=0.341 Sum_probs=78.4
Q ss_pred cccccccEEEEeCC-CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecC-CCCCcEEEEEeecC
Q psy9950 490 RLLRQNEFIVSQGK-GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIG-DSSTKFEIWFRKRK 567 (732)
Q Consensus 490 rll~~g~l~v~~~~-~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~-~~~~~F~I~~~~~~ 567 (732)
+||++|.++....+ ++.++||+|||+|+||+|+++.. .....|.++..|++.++.|.+..+ ..++.|.| ..
T Consensus 1 e~ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~---~~~~~y~~~~~i~l~~~~v~~~~~~~~~~~F~I----~~ 73 (101)
T cd01219 1 ELLKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKM---IGGSKFKVRARIDVSGMQVCEGDNLERPHSFLV----SG 73 (101)
T ss_pred CcccceEEEEEecCCCCceeEEEEEeCCEEEEEEcccc---cCCCcEEEEEEEecccEEEEeCCCCCcCceEEE----ec
Confidence 47889999876654 35678999999999999997632 234579999999999999987532 23556666 34
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q psy9950 568 PNETFTLQSMSEDIKQAWTDELSNLLW 594 (732)
Q Consensus 568 ~~~~~~L~A~S~eeK~~Wi~~I~~~i~ 594 (732)
.+.+|+|+|.|+++|++|+++|+++|.
T Consensus 74 ~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 74 KQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 558999999999999999999999974
No 25
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.42 E-value=2e-12 Score=116.66 Aligned_cols=97 Identities=16% Similarity=0.314 Sum_probs=79.5
Q ss_pred ccccccccEEEEeCCCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCC--CCcEEEEEeec
Q psy9950 489 GRLLRQNEFIVSQGKGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDS--STKFEIWFRKR 566 (732)
Q Consensus 489 grll~~g~l~v~~~~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~--~~~F~I~~~~~ 566 (732)
+.+|++|.++..+.+ +.++|++|||||+||+++..- +...|.+...++|..+.|.+..++. .+.|.|.
T Consensus 2 R~li~eG~L~K~~rk-~~~~R~ffLFnD~LvY~~~~~-----~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~---- 71 (104)
T cd01218 2 RVLVGEGVLTKMCRK-KPKQRQFFLFNDILVYGNIVI-----SKKKYNKQHILPLEGVQVESIEDDGIERNGWIIK---- 71 (104)
T ss_pred CEEEecCcEEEeecC-CCceEEEEEecCEEEEEEeec-----CCceeeEeeEEEccceEEEecCCcccccceEEEe----
Confidence 457889999887766 677899999999999998741 2346999999999999998765433 3566664
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q psy9950 567 KPNETFTLQSMSEDIKQAWTDELSNLLWK 595 (732)
Q Consensus 567 ~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~ 595 (732)
.+.++|+++|.|+++|.+|+++|+++|..
T Consensus 72 ~~~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 72 TPTKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred cCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999854
No 26
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.37 E-value=3.8e-12 Score=115.52 Aligned_cols=105 Identities=22% Similarity=0.377 Sum_probs=82.4
Q ss_pred cccccccccEEEEeCC-CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCC----CcEE--
Q psy9950 488 QGRLLRQNEFIVSQGK-GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSS----TKFE-- 560 (732)
Q Consensus 488 ~grll~~g~l~v~~~~-~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~----~~F~-- 560 (732)
.||++..|++.|.... +++++||+|||+.+||+||++... .+...|.||..+.|.+++|++....+. ..|.
T Consensus 1 yGR~~~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~--~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~ 78 (116)
T cd01223 1 YGRPLLDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDN--TGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYG 78 (116)
T ss_pred CCccccCCceEEeEeccCCCceeEEEEecceEEEEEecCCC--CCCccEEhHHhhhhheeeeEecCccCcccCCcceEEE
Confidence 4899999999887653 678899999999999999987532 235679999999999999998642221 1333
Q ss_pred EEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q psy9950 561 IWFRKRKPNETFTLQSMSEDIKQAWTDELSNLLW 594 (732)
Q Consensus 561 I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~ 594 (732)
+++.+..+...++|+|.|+++|+.|+++|..|+.
T Consensus 79 f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~s 112 (116)
T cd01223 79 FYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMS 112 (116)
T ss_pred EEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHh
Confidence 3333445557899999999999999999999864
No 27
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.34 E-value=3.1e-12 Score=111.00 Aligned_cols=93 Identities=22% Similarity=0.465 Sum_probs=73.7
Q ss_pred ccccccccEEEEeCCCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEEEEeecCC
Q psy9950 489 GRLLRQNEFIVSQGKGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKP 568 (732)
Q Consensus 489 grll~~g~l~v~~~~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~ 568 (732)
++|+.+|-++-.+ +|+++.||+|||+|+||+++.++... .....|.+++.|||.++.+.... |.+. .++
T Consensus 1 r~Lv~eg~lvel~-~~~rK~R~~FLFnDlLvc~~ik~~~~-~k~~kY~~~w~IPL~dl~~~~~~------~~~~---~~~ 69 (96)
T cd01228 1 RQLVKDSFLVELV-EGSRKLRHLFLFTDVLLCAKLKKTSR-GKHQQYDCKWYIPLADLSFPSEP------FRIH---NKN 69 (96)
T ss_pred Ccccccceeeeeh-hCCCcceEEEeeccEEEEEEeeeccC-ccccccceeEEEEhHHheecchh------hhcc---ccC
Confidence 4677777665444 56889999999999999999875322 33378999999999999887542 3332 456
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 569 NETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 569 ~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
+++|++.|+|..||.+|++.|+++
T Consensus 70 ~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 70 GKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred CceEEEEecCHHHHHHHHHHHHHH
Confidence 899999999999999999999886
No 28
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.27 E-value=5.8e-11 Score=106.98 Aligned_cols=96 Identities=18% Similarity=0.289 Sum_probs=77.2
Q ss_pred cccccccEEEEeCC-CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCC--------CcEE
Q psy9950 490 RLLRQNEFIVSQGK-GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSS--------TKFE 560 (732)
Q Consensus 490 rll~~g~l~v~~~~-~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~--------~~F~ 560 (732)
++|++|++.+.... |++++|++|||+..||+||+.. ...+.|.||..|.|..+.|++..++.. +.|.
T Consensus 1 eli~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~----~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafk 76 (109)
T cd01224 1 ELFLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDL----IRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLK 76 (109)
T ss_pred CceEeeeEEEEecccCCcccEEEEEecceEEEEeccc----ccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEE
Confidence 47899999987653 6788999999999999999753 234589999999999999998765531 3344
Q ss_pred EEEeecCCCeEEEEEcCCHHHHHHHHHHHHH
Q psy9950 561 IWFRKRKPNETFTLQSMSEDIKQAWTDELSN 591 (732)
Q Consensus 561 I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ 591 (732)
|.- ...+..|+|+|.|+++|..|+++|..
T Consensus 77 l~~--~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 77 IYS--ESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEE--cCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 432 45568999999999999999999864
No 29
>KOG4269|consensus
Probab=99.15 E-value=2.6e-11 Score=138.70 Aligned_cols=254 Identities=20% Similarity=0.292 Sum_probs=191.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHH
Q psy9950 290 GVQTLKTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTRE---DIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQ 366 (732)
Q Consensus 290 ~~~~~k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~---~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~ 366 (732)
+.+..|....|+.+...+...|..|...|+.+.- -+.|++.. .-|.....+++.||..+..|+.+| ..|...|..
T Consensus 323 ~~~~ek~~~~rkl~dS~f~~~d~~~~~s~d~l~l-~~~p~~al~~tsqp~~~~~~~~t~~~k~s~i~~~h-k~~~~~l~p 400 (1112)
T KOG4269|consen 323 KIPDEKGLEMRKLVDSGFLASDEHYSQSLDALLL-PMKPLKALATTSQPVLTKQQIETIFNKFSPIYEIH-KEFYDNLHP 400 (1112)
T ss_pred CCchhhhHHHHHHHhcccccccchhhcccchhhc-ccccccccCCCCCCCccccccccccccCCCchhhh-hhhccccCc
Confidence 4567788889999999999999999999987753 44555532 233444578999999999999999 799999988
Q ss_pred HhcCC---CchHHHHhhhhhhhhhHHHhhhc--hHHHHHHHHHHh--HHHHHHHHHhh-----------cCCCChhhhhh
Q psy9950 367 CANLP---LSVGQCFLNHENKFYLYALYNKN--KPKSDALMTEYG--SSFFKAKQLEL-----------ADRMDLASYLL 428 (732)
Q Consensus 367 ~~~~~---~~Ig~iFl~~~~~f~~Y~~Y~~n--~~~a~~~L~~~~--~~ffk~~~~~l-----------~~~l~L~slLi 428 (732)
..++| ...|..|.+....+..|..|+.| |..|...-..+. ...|+....++ ....+..-+|.
T Consensus 401 k~q~~~sqs~~~~~~~~L~S~l~n~~af~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~~~n~~s~~sst~~~~~~~l~ 480 (1112)
T KOG4269|consen 401 KVQQWKSQSNSGGLFQKLASQLGNYLAFVDNESYLVALEMAEKCASSSPQFQCISEQLVVGVNKDSKDSSTWKDEEWLLY 480 (1112)
T ss_pred hhhhhhhhhccCccchhhhhhcchhhhhhcchhhhhhcccccchhhcchhhhhhhhhheecccccccccCCccchhhhhc
Confidence 77766 47999999999999999999999 777666555554 33344443332 12357889999
Q ss_pred hhHhhHHhhHHHHHHHHhcCc---ccHH----------HHHHHHHHHHHHhhhhhhHhhhhhhcccccccc-cccccccc
Q psy9950 429 KPVQRMGKYALLLQQLMKASR---QDVK----------DIKEAESMVRFQLRHGNDLLAMDSLRECDVNLK-EQGRLLRQ 494 (732)
Q Consensus 429 kPVQRI~rY~LLLkeLlK~T~---~d~~----------dL~~Al~~v~~~~~~iNd~~~~~~i~~~~~~L~-~~grll~~ 494 (732)
+||-|.++..+-|.++||++| +|+. .|++|++.....+..+|+-+.. ++-....-. +.++++ .
T Consensus 481 rpi~~~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~--~r~~~f~ks~~~rq~L-~ 557 (1112)
T KOG4269|consen 481 RPIDRVTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEP--RRLLEFLKSGELRQLL-K 557 (1112)
T ss_pred cchhhhhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccch--hhhhhhcccchhHhhh-h
Confidence 999999999999999999998 5655 6889999999988888875443 222221112 223444 4
Q ss_pred ccEEEEeCCCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEE
Q psy9950 495 NEFIVSQGKGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGIT 549 (732)
Q Consensus 495 g~l~v~~~~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~ 549 (732)
+.|.+-...+.++.|++|||.+.++++|.++.++ .....|.+++.|++.+..+.
T Consensus 558 d~f~~~v~~~~~~~~~~~~~~~~ll~tk~~~~k~-~~nq~y~~~~~Ipl~d~~v~ 611 (1112)
T KOG4269|consen 558 DVFFVEVEEAQRKLRHVFLFTNSLLCTKLKKLKD-GKNQQYDCKWYIPLKDLQVN 611 (1112)
T ss_pred hheeeccccccccchhhHHHhhccchhhhhhhcc-cccccCceeEEEeccccccC
Confidence 5565544445677899999999999999887544 45678999999999887643
No 30
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.11 E-value=5.4e-10 Score=103.49 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=71.8
Q ss_pred cccccccEEEEeCCC---------CeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC------
Q psy9950 490 RLLRQNEFIVSQGKG---------KKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD------ 554 (732)
Q Consensus 490 rll~~g~l~v~~~~~---------kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~------ 554 (732)
-|+++|+++.....+ +++.+|+|||||+||+||+| ....|.++...+.+.+.|......
T Consensus 2 wLvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK------~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~ 75 (125)
T cd01221 2 WLVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKK------LGSTFVVFDYAPRSFLRVEKIEPDNQKIPL 75 (125)
T ss_pred ceEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEec------CCCeEEEEeeccccceEEeecccccccccc
Confidence 467889888765431 34689999999999999987 245788988888888877754322
Q ss_pred ------CCCcEEEEEeec--CCCeEEEEEcCCHHHHHHHHHHHH
Q psy9950 555 ------SSTKFEIWFRKR--KPNETFTLQSMSEDIKQAWTDELS 590 (732)
Q Consensus 555 ------~~~~F~I~~~~~--~~~~~~~L~A~S~eeK~~Wi~~I~ 590 (732)
.++.|.+.+..+ +....++|+|.|+.||..|+.+|.
T Consensus 76 ~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 76 GSNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred cccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 345687766544 344689999999999999999883
No 31
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.79 E-value=5.6e-08 Score=86.55 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=71.6
Q ss_pred ccccccEEEEeCC-CCe-eEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCC--CcEEEEEeec
Q psy9950 491 LLRQNEFIVSQGK-GKK-CLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSS--TKFEIWFRKR 566 (732)
Q Consensus 491 ll~~g~l~v~~~~-~kk-~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~--~~F~I~~~~~ 566 (732)
+|.+|.+.-.+.+ .+. +.+++|||||+||++.... ...|.+...++|.++.|.+..+.++ +.|.|.
T Consensus 2 ~i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~------~~ky~~~~~~~L~~i~V~ni~D~~~~kNafki~---- 71 (100)
T cd01226 2 VILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINA------AGKYVMESTYSLNSVAVVNVKDRENAKKVLKLL---- 71 (100)
T ss_pred EEEcCcEEEechhhCCccceEEEEEeccEEEEEEecc------cceEEEEEEEehHHeEEEecCCCcCcCceEEEE----
Confidence 5677877765544 222 3457999999999998863 1269999999999999987655443 445553
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 567 KPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 567 ~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
...++++++|.|+++|.+|++.|+++.
T Consensus 72 t~~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 72 IFPESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred eCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence 566899999999999999999999985
No 32
>PF15411 PH_10: Pleckstrin homology domain
Probab=98.78 E-value=4.8e-08 Score=90.10 Aligned_cols=104 Identities=22% Similarity=0.331 Sum_probs=79.4
Q ss_pred ccccccccccccEEEEeCCCCeeEEEEEccCCeEEEEEeeeCCCC-----------CCCcceEEeeeeeecceEEE-Eec
Q psy9950 485 LKEQGRLLRQNEFIVSQGKGKKCLRHVFLFEELILFSKARRFPDR-----------KNLDLYIYKHSMKMSDIGIT-AQI 552 (732)
Q Consensus 485 L~~~grll~~g~l~v~~~~~kk~~r~vFLF~D~LL~~K~kk~~~~-----------~~~~~y~~K~~i~l~~i~v~-e~~ 552 (732)
+..+|+|+++|.+.|.... ..++++||||+.+|||||.++.... .....+.+|+.|.+.++.-+ ...
T Consensus 1 i~~fG~Lll~g~~~V~k~~-~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s 79 (116)
T PF15411_consen 1 IERFGELLLHGTLTVGKDD-SEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSS 79 (116)
T ss_pred CCcccceEEccEEEEEeCC-cceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccC
Confidence 3568999999999998764 6789999999999999997653321 23456889999999977433 233
Q ss_pred CCCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHH
Q psy9950 553 GDSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDEL 589 (732)
Q Consensus 553 ~~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I 589 (732)
..+.+...|+++.......|+|.+.+++..+.|..+|
T Consensus 80 ~~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 80 KPGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CCCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 2344566777754556689999999999999998764
No 33
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=98.65 E-value=7.9e-08 Score=91.20 Aligned_cols=100 Identities=18% Similarity=0.390 Sum_probs=58.1
Q ss_pred ccccccEEEEeCCC-CeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecC----------------
Q psy9950 491 LLRQNEFIVSQGKG-KKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIG---------------- 553 (732)
Q Consensus 491 ll~~g~l~v~~~~~-kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~---------------- 553 (732)
||.+|.+.-..+.+ ...+.|+|||+++||++|.|.. ++...+.+|+.+|||.-+.+....+
T Consensus 1 Li~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k~~--~k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~~~~r~s~s~~ 78 (135)
T PF15405_consen 1 LIYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPKKV--NKREQYKVYRRPIPLELLVLESMDDPPPQRSIAKRPSSSLI 78 (135)
T ss_dssp ----------------S-EEEEEEESSEEEEEEEEEE--TTEEEEEESS--EEGGG-EEEE--TTTS---------S---
T ss_pred CccccccccccccccccceeEEEeeccEEEEEEEEec--CCeEEEEEEECCcCHHHeeeecccCCCcccCcccccccCcc
Confidence 35566665433321 2348999999999999999853 2344577899999998887764211
Q ss_pred ----------------CCCCcEEEEEeec-CCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 554 ----------------DSSTKFEIWFRKR-KPNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 554 ----------------~~~~~F~I~~~~~-~~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
++...|.|.|++- ..+..|+|+|+|+..|+.|++.|.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 79 SSSSSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp ----SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCccCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 1234577777663 34567999999999999999999874
No 34
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.54 E-value=6.3e-07 Score=80.63 Aligned_cols=102 Identities=21% Similarity=0.316 Sum_probs=81.4
Q ss_pred cccccccccccccEEEEeCC-CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEE--ecCCCCCcEE
Q psy9950 484 NLKEQGRLLRQNEFIVSQGK-GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITA--QIGDSSTKFE 560 (732)
Q Consensus 484 ~L~~~grll~~g~l~v~~~~-~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e--~~~~~~~~F~ 560 (732)
.++..|..+....+.+..+. ....+||++||...|+|.... .+...|+|++.+||..+.|+. ..++..+.|+
T Consensus 5 ~i~~lG~vi~mS~V~~~~~~~qe~~eRyLvLFp~~LlilS~s-----~r~sGf~yqGkLPL~~i~v~~lEd~e~~~~aFe 79 (111)
T cd01225 5 DIKTLGNVIHMSQVAVQYGAGEEKRERYLVLFPNVLLMLSAS-----PRMSGFIYQGKLPLTGIIVTRLEDTEALKNAFE 79 (111)
T ss_pred chhhcCceEEEEEEEEecCCccccceeEEEEcCceEEEEEcC-----CCccceEEeeeecccccEEechHhccCccceEE
Confidence 45667888888888876543 457799999999999999874 234579999999999999994 3444557888
Q ss_pred EEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 561 IWFRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 561 I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
|. +.--+.+++.|.+.+|.++|+..|++.+
T Consensus 80 I~---G~li~~i~v~C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 80 IS---GPLIERIVVVCNNPQDAQEWVELLNANN 109 (111)
T ss_pred Ee---ccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 85 3445899999999999999999998753
No 35
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.32 E-value=5.7e-06 Score=72.87 Aligned_cols=94 Identities=15% Similarity=0.259 Sum_probs=74.0
Q ss_pred cccccEEEEe-CCCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC-------CCCcEEEEE
Q psy9950 492 LRQNEFIVSQ-GKGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD-------SSTKFEIWF 563 (732)
Q Consensus 492 l~~g~l~v~~-~~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~-------~~~~F~I~~ 563 (732)
+++|.+.... ..++.+.||++|+++.|++.+... .......+..|+|.++.+...... ..+.|.|.+
T Consensus 2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~-----~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~ 76 (104)
T PF00169_consen 2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSK-----DKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITT 76 (104)
T ss_dssp EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTT-----TTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEE
T ss_pred EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCc-----cccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEe
Confidence 5678887776 335778999999999999998763 133566788999999988876554 346677764
Q ss_pred eecCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 564 RKRKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 564 ~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
. ....|.|.|.|++++..|+++|+.++
T Consensus 77 ~---~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 77 P---NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp T---TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred C---CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 3 33799999999999999999999875
No 36
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.18 E-value=1.7e-05 Score=68.73 Aligned_cols=94 Identities=23% Similarity=0.341 Sum_probs=70.5
Q ss_pred cccccEEEEeC--CCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC----CCCcEEEEEee
Q psy9950 492 LRQNEFIVSQG--KGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD----SSTKFEIWFRK 565 (732)
Q Consensus 492 l~~g~l~v~~~--~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~----~~~~F~I~~~~ 565 (732)
+++|.+..... .+..+.+|++|+++.|.+++.... .........|++.++.+....+. ....|.|...
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~- 75 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKA-----KKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTA- 75 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCc-----cccCCCceEEECCcCEEEeCCCCccCCCceEEEEEec-
Confidence 56777777664 456789999999999999987632 11256677899999987766553 3455666532
Q ss_pred cCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 566 RKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 566 ~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
....+.|.|.|++++..|+..|+.++
T Consensus 76 --~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 76 --DRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 23699999999999999999998875
No 37
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.79 E-value=0.0001 Score=63.12 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=61.6
Q ss_pred CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC--CCCcEEEEEeecCCCeEEEEEcCCHHH
Q psy9950 504 GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD--SSTKFEIWFRKRKPNETFTLQSMSEDI 581 (732)
Q Consensus 504 ~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~--~~~~F~I~~~~~~~~~~~~L~A~S~ee 581 (732)
+..+.+|++|+++.|++++.... ...+..+..|+|.++.+....+. ..+.|.|... ....+.|.|.|+++
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~-----~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~---~~~~~~~~~~s~~~ 85 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSS-----KKSYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTP---DGRSYLLQAESEEE 85 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCC-----CcCCCCcceEEcCCCEEEECCCcCCCCcEEEEecC---CCcEEEEEeCCHHH
Confidence 35678999999999999986531 11456777889999888776555 3567777643 23899999999999
Q ss_pred HHHHHHHHHH
Q psy9950 582 KQAWTDELSN 591 (732)
Q Consensus 582 K~~Wi~~I~~ 591 (732)
+..|++.|+.
T Consensus 86 ~~~W~~~l~~ 95 (96)
T cd00821 86 REEWIEALQS 95 (96)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 38
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.54 E-value=0.00099 Score=59.95 Aligned_cols=90 Identities=10% Similarity=0.175 Sum_probs=63.7
Q ss_pred cccccEEEEeCC-CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC-----CCCcEEEEEee
Q psy9950 492 LRQNEFIVSQGK-GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD-----SSTKFEIWFRK 565 (732)
Q Consensus 492 l~~g~l~v~~~~-~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~-----~~~~F~I~~~~ 565 (732)
+++|.+....+. +.-+.|++.|-+..|.+-|..+. -..+..|+|.++.+....+. .++.|.|.
T Consensus 3 ~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~--------~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~--- 71 (100)
T cd01233 3 SKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKD--------PVERGVINLSTARVEHSEDQAAMVKGPNTFAVC--- 71 (100)
T ss_pred ceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCC--------ccEeeEEEecccEEEEccchhhhcCCCcEEEEE---
Confidence 456666654443 23467899999888888886531 23356788888776644332 35677773
Q ss_pred cCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 566 RKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 566 ~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
.+.++|.|+|.|+++++.|+++|+..+
T Consensus 72 -t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 72 -TKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred -CCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 567899999999999999999997653
No 39
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.53 E-value=0.00096 Score=58.03 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=61.5
Q ss_pred cccEEEEeCC-CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEEEEeecCCCeEE
Q psy9950 494 QNEFIVSQGK-GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETF 572 (732)
Q Consensus 494 ~g~l~v~~~~-~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~~~~~ 572 (732)
+|.+....+. +.-+.|+|+|.++.|.+.+.... .. ......|.|..+.+... ...++.|.|.. ..+.+|
T Consensus 2 ~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~---~~---~~~~~~i~l~~~~~~~~-~~~~~~F~i~~---~~~~~~ 71 (91)
T cd01246 2 EGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSS---MR---GKPRGTILLSGAVISED-DSDDKCFTIDT---GGDKTL 71 (91)
T ss_pred eEEEEEecccCCCceeeEEEEECCEEEEEecCcc---CC---CCceEEEEeceEEEEEC-CCCCcEEEEEc---CCCCEE
Confidence 4555443322 34568999999999999887531 11 34566788888765543 33456777752 333899
Q ss_pred EEEcCCHHHHHHHHHHHHHH
Q psy9950 573 TLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 573 ~L~A~S~eeK~~Wi~~I~~~ 592 (732)
.|+|.|.+++..|+.+|+.|
T Consensus 72 ~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 72 HLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999763
No 40
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=97.41 E-value=0.0019 Score=55.57 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=57.2
Q ss_pred CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecC--CCCCcEEEEEeecCCCeEEEEEcCCHHH
Q psy9950 504 GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIG--DSSTKFEIWFRKRKPNETFTLQSMSEDI 581 (732)
Q Consensus 504 ~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~--~~~~~F~I~~~~~~~~~~~~L~A~S~ee 581 (732)
+..+.++++|+++.|++.+.+... .... ..+++..+.+..... +....|.|..... ....+.|+|.|.++
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~---~~~~----~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~-~~~~~~~~~~~~~~ 88 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKK---EIKP----GSIPLSEISVEEDPDGSDDPNCFAIVTKDR-GRRVFVFQADSEEE 88 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCC---cCCC----CEEEccceEEEECCCCCCCCceEEEECCCC-CcEEEEEEcCCHHH
Confidence 356789999999999999886321 1110 567777777555433 2456777753321 36899999999999
Q ss_pred HHHHHHHHHH
Q psy9950 582 KQAWTDELSN 591 (732)
Q Consensus 582 K~~Wi~~I~~ 591 (732)
++.|+.+|++
T Consensus 89 ~~~W~~al~~ 98 (99)
T cd00900 89 AQEWVEALQQ 98 (99)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 41
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=97.38 E-value=0.0018 Score=60.77 Aligned_cols=109 Identities=17% Similarity=0.339 Sum_probs=76.0
Q ss_pred ccccccccccEEEEeCC---C---CeeEEEEEccCCeEEE-EEee----e-CCC------CCCCcceEEeeeeeecceEE
Q psy9950 487 EQGRLLRQNEFIVSQGK---G---KKCLRHVFLFEELILF-SKAR----R-FPD------RKNLDLYIYKHSMKMSDIGI 548 (732)
Q Consensus 487 ~~grll~~g~l~v~~~~---~---kk~~r~vFLF~D~LL~-~K~k----k-~~~------~~~~~~y~~K~~i~l~~i~v 548 (732)
..|.|+.++........ | |.-+..+|.|...+|| ||.. + ... ....+.+.|+..||+..+.|
T Consensus 23 smgdLL~h~~v~WLNp~~slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQV 102 (160)
T cd01255 23 SPGDLLYHGGVEWLNPSDSLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQV 102 (160)
T ss_pred CHHHhhhhcceeeecCChhhccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeee
Confidence 34778887766543222 2 3346789999998876 4421 1 100 12235688999999999999
Q ss_pred EEecCC---CCCcEEEEEeec----CCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q psy9950 549 TAQIGD---SSTKFEIWFRKR----KPNETFTLQSMSEDIKQAWTDELSNLLWK 595 (732)
Q Consensus 549 ~e~~~~---~~~~F~I~~~~~----~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~ 595 (732)
...... ....|+|.+.+. .++..|.|+++++|.|+..++.|+.+|.+
T Consensus 103 R~~n~ad~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 103 RASSAADMESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred ecCCCcCcccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 875432 345688776543 36679999999999999999999999854
No 42
>KOG0931|consensus
Probab=97.38 E-value=0.002 Score=70.51 Aligned_cols=166 Identities=17% Similarity=0.214 Sum_probs=102.2
Q ss_pred ChhhhhhhhHhhHHhhHHHHHHHHhcCc-----cc--HHHHHHHHHHHHHHhhhhhh-Hhh-h----hhhccccc-cc-c
Q psy9950 422 DLASYLLKPVQRMGKYALLLQQLMKASR-----QD--VKDIKEAESMVRFQLRHGND-LLA-M----DSLRECDV-NL-K 486 (732)
Q Consensus 422 ~L~slLikPVQRI~rY~LLLkeLlK~T~-----~d--~~dL~~Al~~v~~~~~~iNd-~~~-~----~~i~~~~~-~L-~ 486 (732)
++-+==+||=++| .|.+++|+.- +| .+.|.-.++.|+.-.-+.|| .+. + ..|.+... .| .
T Consensus 338 DmySPnVKperkM-----~leDFikNLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVsqVqkVer~IVGkk~~vLs~ 412 (627)
T KOG0931|consen 338 DMYSPNVKPERKM-----KLEDFIKNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVSQVQKVERAIVGKKPPVLSL 412 (627)
T ss_pred cccCCCCCHHHhh-----hHHHHHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHhcCCCccccc
Confidence 3444446676665 4678888875 22 33455566666543322332 221 1 23434332 22 3
Q ss_pred ccccccccccEE-EEeCC----CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEE
Q psy9950 487 EQGRLLRQNEFI-VSQGK----GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEI 561 (732)
Q Consensus 487 ~~grll~~g~l~-v~~~~----~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I 561 (732)
..+||+.--.+. |.+.. ....+|-||||||+||++|.-.. ++...+|.|++.+.|-.+.+... ....+.|.|
T Consensus 413 phRRLVC~crL~eV~Dpnk~Qk~~ahqReVFLFNDllVV~K~~~k--kk~s~TYtf~qs~~Llgmhv~lF-qn~yY~fGi 489 (627)
T KOG0931|consen 413 PHRRLVCYCRLFEVPDPNKPQKLGAHQREVFLFNDLLVVTKIFQK--KKTSVTYTFRQSFLLLGMHVQLF-QNGYYEFGI 489 (627)
T ss_pred CCceEEEEEeeeecCCCCchhhcccccceeeeecchhhhhhhhcc--CcceeEeehhhhhhHHHHHHHHH-hhccccCce
Confidence 457777755544 33333 12358999999999999996432 23445899999999987766543 233456666
Q ss_pred EEeec--CCC--eEEEEEcCCHHHHHHHHHHHHHHHHH
Q psy9950 562 WFRKR--KPN--ETFTLQSMSEDIKQAWTDELSNLLWK 595 (732)
Q Consensus 562 ~~~~~--~~~--~~~~L~A~S~eeK~~Wi~~I~~~i~~ 595 (732)
.+... ++. ..+.|.|.+.+++..+++++++-|.+
T Consensus 490 tltsp~~g~e~k~~ihFnA~n~~dr~kFv~Dl~ESIaE 527 (627)
T KOG0931|consen 490 TLTSPVPGSEKKVLIHFNAPNFQDRCKFVADLRESIAE 527 (627)
T ss_pred EEeccCCCCceeEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 55432 222 36789999999999999999998866
No 43
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.36 E-value=0.0019 Score=57.12 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=61.2
Q ss_pred cccEEEEeCC-CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEEEEeecCCCeEE
Q psy9950 494 QNEFIVSQGK-GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETF 572 (732)
Q Consensus 494 ~g~l~v~~~~-~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~~~~~ 572 (732)
.|.+..+... ..-+.|+++|=+..|.+.|.+.. . ....++.|+|..+.+... +.+.+.|+|.. .+.++|
T Consensus 2 ~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~---~---~~~~~G~I~L~~~~i~~~-~~~~~~F~i~~---~~~r~~ 71 (91)
T cd01247 2 NGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAE---K---SHGCRGSIFLKKAIIAAH-EFDENRFDISV---NENVVW 71 (91)
T ss_pred ceEEEEeccccCCCceEEEEEECCEEEEEecCcc---C---cCCCcEEEECcccEEEcC-CCCCCEEEEEe---CCCeEE
Confidence 3444444333 23467899997777778776521 1 114678999998877754 33457788752 344899
Q ss_pred EEEcCCHHHHHHHHHHHHH
Q psy9950 573 TLQSMSEDIKQAWTDELSN 591 (732)
Q Consensus 573 ~L~A~S~eeK~~Wi~~I~~ 591 (732)
.|.|.|+++++.|+++|++
T Consensus 72 ~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 72 YLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999964
No 44
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.20 E-value=0.0032 Score=56.74 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=52.0
Q ss_pred eEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCC------CCcEEEEEeecCCCeEEEEEcCCHH
Q psy9950 507 CLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDS------STKFEIWFRKRKPNETFTLQSMSED 580 (732)
Q Consensus 507 ~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~------~~~F~I~~~~~~~~~~~~L~A~S~e 580 (732)
+-|++.|=+..|.+-|.... .. .....|.|.++..+...++. +++|+|. .+.++|.|+|.|++
T Consensus 20 krRwF~L~~~~L~y~K~~~~---~~----~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~----tp~rt~~l~A~se~ 88 (101)
T cd01264 20 KTRYFTLSGAQLLFQKGKSK---DD----PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIF----TADKTYILKAKDEK 88 (101)
T ss_pred eeEEEEEeCCEEEEEeccCc---cC----CCCceEEcccceEEeeccccccccccCcEEEEE----cCCceEEEEeCCHH
Confidence 45777777777665554321 00 11467888888766554432 2567774 56789999999999
Q ss_pred HHHHHHHHHHHH
Q psy9950 581 IKQAWTDELSNL 592 (732)
Q Consensus 581 eK~~Wi~~I~~~ 592 (732)
+++.|++.|+.|
T Consensus 89 e~e~WI~~i~~a 100 (101)
T cd01264 89 NAEEWLQCLNIA 100 (101)
T ss_pred HHHHHHHHHHhh
Confidence 999999999876
No 45
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.13 E-value=0.0032 Score=56.15 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=43.0
Q ss_pred EEeeeeeecceEEEEecCCCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q psy9950 536 IYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLLW 594 (732)
Q Consensus 536 ~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~ 594 (732)
..+..|+|..+.++...++..+.|.|. .+..+|.|+|.|+++++.|+++|+.+.|
T Consensus 41 ~p~G~I~L~~~~~~~~~~~~~~~F~i~----t~~r~y~l~A~s~~e~~~Wi~al~~~~~ 95 (95)
T cd01265 41 KPLGRVDLSGAAFTYDPREEKGRFEIH----SNNEVIALKASSDKQMNYWLQALQSKRW 95 (95)
T ss_pred cccceEECCccEEEcCCCCCCCEEEEE----cCCcEEEEECCCHHHHHHHHHHHHhhcC
Confidence 366788888887765554446677774 4568999999999999999999988643
No 46
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.04 E-value=0.0026 Score=57.14 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=56.6
Q ss_pred eEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCC----CcEEEEEeecCCCeEEEEEcCCHHHH
Q psy9950 507 CLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSS----TKFEIWFRKRKPNETFTLQSMSEDIK 582 (732)
Q Consensus 507 ~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~----~~F~I~~~~~~~~~~~~L~A~S~eeK 582 (732)
+.|++.|=+..|.+.|... -.-+..|+|+++..++.+++.. +.|.|. .+..+|.|+|.|++++
T Consensus 22 KkRwF~Lt~~~L~Y~k~~~---------~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqiv----t~~r~~yi~a~s~~E~ 88 (98)
T cd01244 22 KKRYFQLTTTHLSWAKDVQ---------CKKSALIKLAAIKGTEPLSDKSFVNVDIITIV----CEDDTMQLQFEAPVEA 88 (98)
T ss_pred ceeEEEECCCEEEEECCCC---------CceeeeEEccceEEEEEcCCcccCCCceEEEE----eCCCeEEEECCCHHHH
Confidence 5788888888888887542 2467799999999888766543 345654 3557999999999999
Q ss_pred HHHHHHHHHH
Q psy9950 583 QAWTDELSNL 592 (732)
Q Consensus 583 ~~Wi~~I~~~ 592 (732)
+.|+++|+++
T Consensus 89 ~~Wi~al~k~ 98 (98)
T cd01244 89 TDWLNALEKQ 98 (98)
T ss_pred HHHHHHHhcC
Confidence 9999999863
No 47
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.03 E-value=0.0064 Score=56.91 Aligned_cols=92 Identities=8% Similarity=0.174 Sum_probs=61.9
Q ss_pred cccEEEEeCC-CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecC-CCCCcEEEEEeec-----
Q psy9950 494 QNEFIVSQGK-GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIG-DSSTKFEIWFRKR----- 566 (732)
Q Consensus 494 ~g~l~v~~~~-~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~-~~~~~F~I~~~~~----- 566 (732)
+|.+....+. +.-+.|+|.|-++.|.+-|.... -..+..|+|.++.|..... ...++|+|.....
T Consensus 3 ~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~--------~~~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~ 74 (125)
T cd01252 3 EGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTTD--------KEPRGIIPLENVSIREVEDPSKPFCFELFSPSDKQQIK 74 (125)
T ss_pred EEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCCC--------CCceEEEECCCcEEEEcccCCCCeeEEEECCccccccc
Confidence 4555433322 34578999998888877764321 1356788898877665422 2445687754222
Q ss_pred ------------CCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 567 ------------KPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 567 ------------~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
.....|.|+|.|++++..|+++|+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~ 113 (125)
T cd01252 75 ACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASI 113 (125)
T ss_pred cccccccccccccCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 123688899999999999999999986
No 48
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=97.00 E-value=0.005 Score=54.67 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=58.9
Q ss_pred cccEEEEeCC-C----CeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecC-CCCCcEEEEEeecC
Q psy9950 494 QNEFIVSQGK-G----KKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIG-DSSTKFEIWFRKRK 567 (732)
Q Consensus 494 ~g~l~v~~~~-~----kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~-~~~~~F~I~~~~~~ 567 (732)
+|.+....+. | .-+.|++.|-++.|.+-|.... -..+..|+|..+.+....+ ...+.|.|. .
T Consensus 3 ~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~--------~~~~~~I~L~~~~v~~~~~~~k~~~F~I~----~ 70 (96)
T cd01260 3 DGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQD--------EKAEGLIFLSGFTIESAKEVKKKYAFKVC----H 70 (96)
T ss_pred eeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCC--------CccceEEEccCCEEEEchhcCCceEEEEC----C
Confidence 4555554333 2 3567899999888888876531 1235678888876654322 234456653 3
Q ss_pred CC-eEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 568 PN-ETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 568 ~~-~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
+. .+|.|+|.|+++.+.|+++|+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 34 89999999999999999999764
No 49
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=96.73 E-value=0.0088 Score=54.45 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=53.4
Q ss_pred eeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCC---------CCcEEEEEeecCCCeEEEEEc
Q psy9950 506 KCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDS---------STKFEIWFRKRKPNETFTLQS 576 (732)
Q Consensus 506 k~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~---------~~~F~I~~~~~~~~~~~~L~A 576 (732)
-+.|++.|=+..|.+-+.... ..-..++.|+|..+...+...+. .+.|.|. .+..+|.|+|
T Consensus 21 wKkRwFvL~~~~L~Yyk~~~~------~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~----t~~r~~yl~A 90 (106)
T cd01238 21 YKERLFVLTKSKLSYYEGDFE------KRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV----HDEGTLYVFA 90 (106)
T ss_pred ceeEEEEEcCCEEEEECCCcc------cccCcceeEECCcceEEEEecCCcCcccccccCccEEEE----eCCCeEEEEc
Confidence 357888887777777775421 01236778999988776644332 3456554 3456899999
Q ss_pred CCHHHHHHHHHHHHH
Q psy9950 577 MSEDIKQAWTDELSN 591 (732)
Q Consensus 577 ~S~eeK~~Wi~~I~~ 591 (732)
.|++++++|+++|++
T Consensus 91 ~s~~er~~WI~ai~~ 105 (106)
T cd01238 91 PTEELRKRWIKALKQ 105 (106)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999975
No 50
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.60 E-value=0.022 Score=49.73 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=56.9
Q ss_pred cccEEEEeCC--CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC--CCCcEEEEEeecCCC
Q psy9950 494 QNEFIVSQGK--GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD--SSTKFEIWFRKRKPN 569 (732)
Q Consensus 494 ~g~l~v~~~~--~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~--~~~~F~I~~~~~~~~ 569 (732)
+|.+....+. +.-+.|||.|-++.|++-+..... .......|.+..+.+...... ..+.|.|. .+.
T Consensus 2 ~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~------~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~----~~~ 71 (94)
T cd01250 2 QGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDY------DNAHVKEIDLRRCTVRHNGKQPDRRFCFEVI----SPT 71 (94)
T ss_pred cceEEEECCCcCCCceEEEEEEeCCeEEEEcCCccc------ccccceEEeccceEEecCccccCCceEEEEE----cCC
Confidence 4666554432 345688999988888877644210 122334577766655544333 34556664 334
Q ss_pred eEEEEEcCCHHHHHHHHHHHHH
Q psy9950 570 ETFTLQSMSEDIKQAWTDELSN 591 (732)
Q Consensus 570 ~~~~L~A~S~eeK~~Wi~~I~~ 591 (732)
.+|.|+|.|+++.++|+.+|+.
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhc
Confidence 8999999999999999999964
No 51
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.51 E-value=0.011 Score=53.94 Aligned_cols=90 Identities=22% Similarity=0.307 Sum_probs=62.8
Q ss_pred CCeeEEEEEccCCeEEEEEeeeC-------CCC--CCCcceEEeeeeeecceEEEEecCCC---CCcEEEEEeecCC--C
Q psy9950 504 GKKCLRHVFLFEELILFSKARRF-------PDR--KNLDLYIYKHSMKMSDIGITAQIGDS---STKFEIWFRKRKP--N 569 (732)
Q Consensus 504 ~kk~~r~vFLF~D~LL~~K~kk~-------~~~--~~~~~y~~K~~i~l~~i~v~e~~~~~---~~~F~I~~~~~~~--~ 569 (732)
|+.....+|||+|.|=+||++.. +.. .-...|..-..++|+.|..+.++.|. .+.|.+.++..+. +
T Consensus 23 grGe~~tlFLfsD~lEi~kkR~kv~~~~KSP~~~~~~~~~~KHi~lmpLs~IkrVvdI~DtE~c~~aF~L~~R~p~d~~~ 102 (129)
T cd01229 23 DRGEQVTLFLFNDCLEIARKRHKVIGTFKSPHGSTRPPASLKHIHLMPLSQIKKVLDIRDTEDCHNAFALLVRPPTEQAN 102 (129)
T ss_pred CCCCeEEEEEecchHHHhhhcccccCCcCCCCCCCCCCcccceEEEeEhHHeEEEEeeeccccccceeEEEEeCCccchh
Confidence 56778999999999999997631 000 11224555567888888766555554 7889998875432 3
Q ss_pred eEEEEEcCC-HHHHHHHHHHHHHHH
Q psy9950 570 ETFTLQSMS-EDIKQAWTDELSNLL 593 (732)
Q Consensus 570 ~~~~L~A~S-~eeK~~Wi~~I~~~i 593 (732)
.-|.|+..+ +.+|..|++.|.+.+
T Consensus 103 ~L~sF~l~~Ee~~K~~~Lk~Lcr~~ 127 (129)
T cd01229 103 VLLSFQMTSEELPKEVWLKMLCRHV 127 (129)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHh
Confidence 456666655 568999999998875
No 52
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=96.39 E-value=0.024 Score=50.48 Aligned_cols=77 Identities=9% Similarity=0.159 Sum_probs=49.9
Q ss_pred CeeEEEEEccCC--eEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC---------CCCcEEEEEeecCCCeEEE
Q psy9950 505 KKCLRHVFLFEE--LILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD---------SSTKFEIWFRKRKPNETFT 573 (732)
Q Consensus 505 kk~~r~vFLF~D--~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~---------~~~~F~I~~~~~~~~~~~~ 573 (732)
.-+.|++.|-.+ .|.+-+... ....++.|+|..+.......+ ....|.| ..+.++|.
T Consensus 14 ~WkkRwFvL~~~~~~L~Yy~~~~--------~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i----~t~~r~~~ 81 (101)
T cd01235 14 GWKPRWFVLDPDKHQLRYYDDFE--------DTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDL----KTSKRTYN 81 (101)
T ss_pred CccceEEEEECCCCEEEEecCCC--------CCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEE----EeCCceEE
Confidence 445788888744 566665331 123457788887654433111 1122333 34568999
Q ss_pred EEcCCHHHHHHHHHHHHHHH
Q psy9950 574 LQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 574 L~A~S~eeK~~Wi~~I~~~i 593 (732)
|.|.|++++..|+++|+.+|
T Consensus 82 ~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 82 FLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EECCCHHHHHHHHHHHHhhC
Confidence 99999999999999998864
No 53
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=96.33 E-value=0.026 Score=51.05 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=48.5
Q ss_pred eeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceE----EEEecC-----CCCCcEEEEEeecCCCeEEEEEc
Q psy9950 506 KCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIG----ITAQIG-----DSSTKFEIWFRKRKPNETFTLQS 576 (732)
Q Consensus 506 k~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~----v~e~~~-----~~~~~F~I~~~~~~~~~~~~L~A 576 (732)
-+.|++.|=++.|.+-|.... ..-++.|+|..+. |.+... ...+.|.| ..+..+|.|.|
T Consensus 16 wkkRwFvL~~~~L~Yyk~~~d--------~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i----~t~~Rty~l~a 83 (103)
T cd01251 16 FKKRWFTLDDRRLMYFKDPLD--------AFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTL----VTPERKFLFAC 83 (103)
T ss_pred ceeEEEEEeCCEEEEECCCCC--------cCcCcEEEeeccccceeEeccCCccccccccceEEE----EeCCeEEEEEC
Confidence 356777776667776664321 1244556665432 322111 11125555 35678999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy9950 577 MSEDIKQAWTDELSNLL 593 (732)
Q Consensus 577 ~S~eeK~~Wi~~I~~~i 593 (732)
.|++++..|+++|+.+|
T Consensus 84 ~s~~e~~~Wi~ai~~v~ 100 (103)
T cd01251 84 ETEQDRREWIAAFQNVL 100 (103)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999999986
No 54
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=96.17 E-value=0.043 Score=49.99 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=50.7
Q ss_pred CeeEEEEEccCCeE-------EEEEeeeCCCCCCCcceEEeeeeeecceEEEEec---CCCCCcEEEEEeecCCCeEEEE
Q psy9950 505 KKCLRHVFLFEELI-------LFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQI---GDSSTKFEIWFRKRKPNETFTL 574 (732)
Q Consensus 505 kk~~r~vFLF~D~L-------L~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~---~~~~~~F~I~~~~~~~~~~~~L 574 (732)
.-+.|++.|-++-+ .+-|... ....++.|.|..+.+.+.. ......+.+.|....+.++|.|
T Consensus 18 ~WkrRwFvL~~~~l~~~~~~L~Yyk~~~--------~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l 89 (108)
T cd01266 18 KWVRRYFVLHCGDRERNLFALEYYKTSR--------KFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYL 89 (108)
T ss_pred CcEEEEEEEeccccCCCcceEEEECCCC--------CCccceEEECCccEEEcccccccccCcccceEEEEEeCCccEEE
Confidence 34678888876643 4444321 1245677888887655421 1122233333333456789999
Q ss_pred EcCCHHHHHHHHHHHHHH
Q psy9950 575 QSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 575 ~A~S~eeK~~Wi~~I~~~ 592 (732)
.|.|+++.+.|+.+|+++
T Consensus 90 ~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 90 VAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EECCHHHHHHHHHHHHhh
Confidence 999999999999999874
No 55
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=96.15 E-value=0.044 Score=49.54 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=56.3
Q ss_pred ccccccEEEEeCCCCeeEEEEEccCC------eEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCC--CcEEEE
Q psy9950 491 LLRQNEFIVSQGKGKKCLRHVFLFEE------LILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSS--TKFEIW 562 (732)
Q Consensus 491 ll~~g~l~v~~~~~kk~~r~vFLF~D------~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~--~~F~I~ 562 (732)
++++|.+... + ..+-|+++|=.+ .|-+-+..+. .....-.-+..|.|.++..+....+.. +.|+|.
T Consensus 2 v~k~GyL~K~--K-~~kkRwFVLr~~~~~~p~~Leyyk~ek~---~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~ 75 (101)
T cd01257 2 VRKSGYLRKQ--K-SMHKRFFVLRAESSGGPARLEYYENEKK---FLQKGSAPKRVIPLESCFNINKRADAKHRHLIALY 75 (101)
T ss_pred ccEEEEEeEe--c-CcEeEEEEEecCCCCCCceEEEECChhh---ccccCCCceEEEEccceEEEeeccccccCeEEEEE
Confidence 3456666543 2 334577777766 4555554421 000012356678888887554443333 345553
Q ss_pred EeecCCCeEEEEEcCCHHHHHHHHHHHHH
Q psy9950 563 FRKRKPNETFTLQSMSEDIKQAWTDELSN 591 (732)
Q Consensus 563 ~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ 591 (732)
.+..+|.|.|.|+++++.|++.|.+
T Consensus 76 ----t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 76 ----TRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred ----eCCceEEEEeCCHHHHHHHHHHHhh
Confidence 4567999999999999999999965
No 56
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.15 E-value=0.054 Score=48.88 Aligned_cols=91 Identities=9% Similarity=0.055 Sum_probs=51.3
Q ss_pred cccccEEEEeCC-CCeeEEEEEccC-CeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEE-----ecCCCCCcEEEEEe
Q psy9950 492 LRQNEFIVSQGK-GKKCLRHVFLFE-ELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITA-----QIGDSSTKFEIWFR 564 (732)
Q Consensus 492 l~~g~l~v~~~~-~kk~~r~vFLF~-D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e-----~~~~~~~~F~I~~~ 564 (732)
+++|.+....+. +.-+.||+.|-+ ..|++-+.+.. .. . ...+++..+.+.+ ......+.|.|.+.
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~----~~--~--~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~ 73 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPE----DG--D--PFLPPLNNFSVAECQLMKTERPRPNTFIIRCL 73 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCC----cc--C--ccccccCCeEEeeeeeeeccCCCcceEEEEec
Confidence 456666554333 345688988884 45665654421 11 1 2355555555322 12223456777532
Q ss_pred e-c-CCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 565 K-R-KPNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 565 ~-~-~~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
. . .... +|+|.|++++++|+++|+.+
T Consensus 74 ~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 74 QWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred cCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1 1 1122 56799999999999999875
No 57
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.75 E-value=0.064 Score=48.72 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=50.3
Q ss_pred eEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC---CCCcEEEEEeecCCCeEEEEEcCCHHHHH
Q psy9950 507 CLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD---SSTKFEIWFRKRKPNETFTLQSMSEDIKQ 583 (732)
Q Consensus 507 ~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~---~~~~F~I~~~~~~~~~~~~L~A~S~eeK~ 583 (732)
+.|++.|.++-+|+....+.+ ...-++.|.|+.+..+....+ ..+.|.| ..+.++|.|.|.|+++++
T Consensus 25 krRWFvL~~~~~L~y~~d~~~------~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I----~tp~R~f~l~Aete~E~~ 94 (104)
T cd01236 25 QRRWFILYDHGLLTYALDEMP------TTLPQGTIDMNQCTDVVDAEARTGQKFSICI----LTPDKEHFIKAETKEEIS 94 (104)
T ss_pred cceEEEEeCCCEEEEeeCCCC------CcccceEEEccceEEEeecccccCCccEEEE----ECCCceEEEEeCCHHHHH
Confidence 457777777777766543211 122356788888765543322 2245555 367789999999999999
Q ss_pred HHHHHHHH
Q psy9950 584 AWTDELSN 591 (732)
Q Consensus 584 ~Wi~~I~~ 591 (732)
.|++.|..
T Consensus 95 ~Wi~~l~~ 102 (104)
T cd01236 95 WWLNMLMV 102 (104)
T ss_pred HHHHHHHh
Confidence 99999864
No 58
>KOG0930|consensus
Probab=95.33 E-value=0.11 Score=54.15 Aligned_cols=93 Identities=10% Similarity=0.200 Sum_probs=63.9
Q ss_pred ccccEEEEeCCC--CeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC-CCCcEEEEEeec---
Q psy9950 493 RQNEFIVSQGKG--KKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD-SSTKFEIWFRKR--- 566 (732)
Q Consensus 493 ~~g~l~v~~~~~--kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~-~~~~F~I~~~~~--- 566 (732)
++|+++...+.+ .-+.|+++|-+++|-+-..... -.-++.|+|.+++|.+..+. .+++|+++.-..
T Consensus 262 REGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTD--------KEPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq 333 (395)
T KOG0930|consen 262 REGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTD--------KEPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQ 333 (395)
T ss_pred ccceeeeecCCcccchhheeEEeecceeeeeeeccC--------CCCCcceeccccceeeccCCCCCCeEEEecCCCCcC
Confidence 466666554431 2345777777777777665432 12456899999999875433 467899874322
Q ss_pred ---------------CCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 567 ---------------KPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 567 ---------------~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
+....|.+.|.++|+|++|++.|+.+|
T Consensus 334 ~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~i 375 (395)
T KOG0930|consen 334 VIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAI 375 (395)
T ss_pred eeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 112469999999999999999998876
No 59
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.13 E-value=0.25 Score=45.86 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=55.3
Q ss_pred eEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCC--CCcEEEEEeecCCCeEEEEEcCCHHHHHH
Q psy9950 507 CLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDS--STKFEIWFRKRKPNETFTLQSMSEDIKQA 584 (732)
Q Consensus 507 ~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~--~~~F~I~~~~~~~~~~~~L~A~S~eeK~~ 584 (732)
+.+|+.|-...|.|.|-.+... .+...-.+..+|.|.........+.. .+.|.|. ...+..|.|+|.+.++.+.
T Consensus 27 k~~y~vL~g~~L~~yKDe~~~~-~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~---~~~g~~~lfqA~~~ee~~~ 102 (117)
T cd01230 27 KMFYGILRGLVLYLQKDEHKPG-KSLSETELKNAISIHHALATRASDYSKKPHVFRLR---TADWREFLFQTSSLKELQS 102 (117)
T ss_pred eEEEEEEECCEEEEEccCcccc-cccccccccceEEeccceeEeeccccCCCcEEEEE---cCCCCEEEEECCCHHHHHH
Confidence 4789999999999988664211 11111245678888776533333322 3334443 2345899999999999999
Q ss_pred HHHHHHHHH
Q psy9950 585 WTDELSNLL 593 (732)
Q Consensus 585 Wi~~I~~~i 593 (732)
|+..|+.+.
T Consensus 103 Wi~~I~~~~ 111 (117)
T cd01230 103 WIERINVVA 111 (117)
T ss_pred HHHHHHHHH
Confidence 999998874
No 60
>KOG3524|consensus
Probab=94.83 E-value=0.33 Score=56.49 Aligned_cols=162 Identities=10% Similarity=-0.103 Sum_probs=107.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-C--chhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHH
Q psy9950 291 VQTLKTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTRED-I--PQALRGQRNVIFGNIEKIYEFHSQHFLGELEQC 367 (732)
Q Consensus 291 ~~~~k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~-~--p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~ 367 (732)
.+-.+....+...-.+|+.|+-+|+..+-..+..+..||.... + +-.....|..||+.+.+++.-| .....+++
T Consensus 386 ~~~~~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l-~~nw~e~k-- 462 (850)
T KOG3524|consen 386 VKFKEALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDL-AQNWIEAK-- 462 (850)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHH-HHhhHHHH--
Confidence 3455666778888999999999999988888888888887432 1 1111245789999998888777 34555555
Q ss_pred hcCCCchHHHHhh-hhhhhhhHHHhhhchHHHHHHHHHHh------HHHHHHHHHh-hcCCCChhhhhhhhHhhHHhhHH
Q psy9950 368 ANLPLSVGQCFLN-HENKFYLYALYNKNKPKSDALMTEYG------SSFFKAKQLE-LADRMDLASYLLKPVQRMGKYAL 439 (732)
Q Consensus 368 ~~~~~~Ig~iFl~-~~~~f~~Y~~Y~~n~~~a~~~L~~~~------~~ffk~~~~~-l~~~l~L~slLikPVQRI~rY~L 439 (732)
.+++.|.. +.+.|+.|..++...+.....+..+. .+|-+..+.. .++....-..++.|+|+|++ +
T Consensus 463 -----~el~kayppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlpsvilllndl~k--~ 535 (850)
T KOG3524|consen 463 -----EELKKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVILLLNDMAK--K 535 (850)
T ss_pred -----HHHHHhccchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhHHHHHHHHHHh--h
Confidence 34454443 34455666666655554444444332 4555555444 45677788889999999999 7
Q ss_pred HHHHHHhcCcccHHHHHHHHHHH
Q psy9950 440 LLQQLMKASRQDVKDIKEAESMV 462 (732)
Q Consensus 440 LLkeLlK~T~~d~~dL~~Al~~v 462 (732)
+...+-+++.+...++++.+..|
T Consensus 536 s~N~dk~~leea~kaikev~khI 558 (850)
T KOG3524|consen 536 SDNKDKNNLEEAAKAIKEVLKHI 558 (850)
T ss_pred ccCcchhhHHHhhhhHHHHHHHh
Confidence 77788777776655555554443
No 61
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.76 E-value=0.23 Score=44.68 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=49.9
Q ss_pred eeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecC--CCCCcEEEEEeecCCCeEEEEEcCCHHHHH
Q psy9950 506 KCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIG--DSSTKFEIWFRKRKPNETFTLQSMSEDIKQ 583 (732)
Q Consensus 506 k~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~--~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~ 583 (732)
-+.|++.|-...|+|.|..+... ... .--.+|.+....+....+ ...+.|.|.. ..+..|.|+|.|+++..
T Consensus 23 Wk~r~~vL~~~~L~~ykd~~~~~-~~~---~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~---~~~~~~~f~a~s~e~~~ 95 (104)
T cd01253 23 WDNVYGVLCGQSLSFYKDEKMAA-ENV---HGEPPVDLTGAQCEVASDYTKKKHVFRLRL---PDGAEFLFQAPDEEEMS 95 (104)
T ss_pred cceEEEEEeCCEEEEEecCcccc-cCC---CCCCcEeccCCEEEecCCcccCceEEEEEe---cCCCEEEEECCCHHHHH
Confidence 45789999999998888543110 011 000145555444433222 2345566642 35589999999999999
Q ss_pred HHHHHHHH
Q psy9950 584 AWTDELSN 591 (732)
Q Consensus 584 ~Wi~~I~~ 591 (732)
.|+.+|+.
T Consensus 96 ~Wi~aL~~ 103 (104)
T cd01253 96 SWVRALKS 103 (104)
T ss_pred HHHHHHhc
Confidence 99999964
No 62
>KOG0690|consensus
Probab=94.02 E-value=0.15 Score=54.79 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=55.1
Q ss_pred cccccccEEEEeCC-CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEEEEeecCC
Q psy9950 490 RLLRQNEFIVSQGK-GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKP 568 (732)
Q Consensus 490 rll~~g~l~v~~~~-~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~ 568 (732)
.++++|++...-.. ..-.+||++||+|--++--+.+ +... ...-..-+-+.+.++.+.......++.|.|--.-=..
T Consensus 14 ~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~k-P~~~-~~~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTT 91 (516)
T KOG0690|consen 14 DVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSK-PKEV-QPTPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTT 91 (516)
T ss_pred hhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccC-CccC-CCCcccccchhhhhhhhhhccCCCCceEEEEeeeeee
Confidence 34556655432111 2456899999999888875443 1111 1111111223333443333333345666653111111
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 569 NETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 569 ~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
.-.-+|.+.|+++|++|+++|+.+
T Consensus 92 VIERTF~ves~~eRq~W~~AIq~v 115 (516)
T KOG0690|consen 92 VIERTFYVESAEERQEWIEAIQAV 115 (516)
T ss_pred eeeeeeecCCHHHHHHHHHHHHHH
Confidence 224478999999999999999876
No 63
>PF15409 PH_8: Pleckstrin homology domain
Probab=93.89 E-value=0.96 Score=39.90 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=50.1
Q ss_pred eEEEEEc-cCCeEE-EEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEEEEeecCCCeEEEEEcCCHHHHHH
Q psy9950 507 CLRHVFL-FEELIL-FSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDIKQA 584 (732)
Q Consensus 507 ~~r~vFL-F~D~LL-~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~ 584 (732)
..|++.| |++-+| +.+... . . .+++.|++....|..+ .....+.| ..+...|.|.|.|+++.+.
T Consensus 15 ~kRyFvL~~~~G~LsYy~~~~-----~--~-~~rGsi~v~~a~is~~--~~~~~I~i----dsg~~i~hLKa~s~~~f~~ 80 (89)
T PF15409_consen 15 HKRYFVLDFEKGTLSYYRNQN-----S--G-KLRGSIDVSLAVISAN--KKSRRIDI----DSGDEIWHLKAKSQEDFQR 80 (89)
T ss_pred eeEEEEEEcCCcEEEEEecCC-----C--C-eeEeEEEccceEEEec--CCCCEEEE----EcCCeEEEEEcCCHHHHHH
Confidence 4678888 787666 443221 1 1 6788888877755432 23445554 3567899999999999999
Q ss_pred HHHHHHHH
Q psy9950 585 WTDELSNL 592 (732)
Q Consensus 585 Wi~~I~~~ 592 (732)
|+.+|+.+
T Consensus 81 Wv~aL~~a 88 (89)
T PF15409_consen 81 WVSALQKA 88 (89)
T ss_pred HHHHHHhc
Confidence 99999875
No 64
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.81 E-value=0.26 Score=44.33 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=35.4
Q ss_pred eeeeecceEEEEecC---CCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHH
Q psy9950 539 HSMKMSDIGITAQIG---DSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSN 591 (732)
Q Consensus 539 ~~i~l~~i~v~e~~~---~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ 591 (732)
..|++.++.|....+ +-+++|+|....+ ...|.+.|++ +++++||+.|++
T Consensus 45 gli~l~~~~V~~v~ds~~~r~~cFel~~~~~--~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 45 GLIDLSDAYLYPVHDSLFGRPNCFQIVERAL--PTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ceeeccccEEEEccccccCCCeEEEEecCCC--CeEEEEeCCH-HHHHHHHHHHhc
Confidence 467788886665322 3358888864321 2588888888 999999999975
No 65
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.49 E-value=0.71 Score=41.98 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=50.4
Q ss_pred eeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEEEEeec--CCCeEEEEEcCCHHHHH
Q psy9950 506 KCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKR--KPNETFTLQSMSEDIKQ 583 (732)
Q Consensus 506 k~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~--~~~~~~~L~A~S~eeK~ 583 (732)
.-.++.|.|.|..|+.=+.+. ...+... ..|.+..+.|+..+.-+..+|.|-+... .+..+|.|.|.|++++.
T Consensus 19 ~~KrrwF~lk~~~L~YyK~ke-e~~~~p~----i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya 93 (106)
T cd01237 19 GYKQYWFTFRDTSISYYKSKE-DSNGAPI----GQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYA 93 (106)
T ss_pred hheeEEEEEeCCEEEEEccch-hcCCCCe----EEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHH
Confidence 356778888888886653321 1011111 1234444555443322455687766532 34479999999999999
Q ss_pred HHHHHHHHH
Q psy9950 584 AWTDELSNL 592 (732)
Q Consensus 584 ~Wi~~I~~~ 592 (732)
.|+++++.|
T Consensus 94 ~Wmaa~rla 102 (106)
T cd01237 94 KWMAACRLA 102 (106)
T ss_pred HHHHHHHHh
Confidence 999999765
No 66
>KOG1729|consensus
Probab=92.33 E-value=0.07 Score=56.94 Aligned_cols=105 Identities=19% Similarity=0.356 Sum_probs=66.3
Q ss_pred ccccccccc-ccccEEEEeCCCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCc--EE
Q psy9950 484 NLKEQGRLL-RQNEFIVSQGKGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTK--FE 560 (732)
Q Consensus 484 ~L~~~grll-~~g~l~v~~~~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~--F~ 560 (732)
.+...|+++ .+|.+ |...+++.+.|.+|||+|+++++..... ...|.-...+++..+.+....++.... +.
T Consensus 38 ~~~~~grv~~~q~~~-~k~~rk~~q~r~~~l~~D~~~~~~~~~~-----~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~ 111 (288)
T KOG1729|consen 38 PCRECGRVLCRQGTL-VKRCRKKLQSRSFFLFNDILVYGNIVSD-----NKLLNKNHIIPLEGVSQESRSDNERVRNGWQ 111 (288)
T ss_pred cccccchhhhhhhhh-HHHHhcccccccccccccchhhcccccC-----HHHHhHHhcccccchhhhhhccccccccchh
Confidence 344556544 46665 3333346788999999999999987631 114444455565444433332222111 22
Q ss_pred EEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Q psy9950 561 IWFRKRKPNETFTLQSMSEDIKQAWTDELSNLLWKQAL 598 (732)
Q Consensus 561 I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~q~~ 598 (732)
| ....+.+.+.+.+..+|..|+..|.++......
T Consensus 112 ~----~S~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~ 145 (288)
T KOG1729|consen 112 I----LSALKSFTVLAASQTEKNEWQNHITECVEDLLS 145 (288)
T ss_pred h----hcccchhhhhcchhhhhHHHHHHHHHHHHHHHH
Confidence 2 355678999999999999999999998655433
No 67
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=92.14 E-value=1 Score=41.39 Aligned_cols=95 Identities=20% Similarity=0.186 Sum_probs=46.1
Q ss_pred cccEEEEeCC-CC-eeEEEEEcc-CCeEEEEEeeeCCCCCC-----CcceEEeee----eeecceEEEE--ecCC--CCC
Q psy9950 494 QNEFIVSQGK-GK-KCLRHVFLF-EELILFSKARRFPDRKN-----LDLYIYKHS----MKMSDIGITA--QIGD--SST 557 (732)
Q Consensus 494 ~g~l~v~~~~-~k-k~~r~vFLF-~D~LL~~K~kk~~~~~~-----~~~y~~K~~----i~l~~i~v~e--~~~~--~~~ 557 (732)
+|.+..|..+ ++ -+.|++.|- +.+|.+-|.-....... ......+.. .....+.... ...+ ...
T Consensus 2 ~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (112)
T PF15413_consen 2 EGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLK 81 (112)
T ss_dssp EEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSE
T ss_pred CceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCC
Confidence 4666666554 33 368899898 88888888621100000 001111111 1112222111 1111 112
Q ss_pred cEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 558 KFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 558 ~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
.|.| ..+.++|.|.|.+.+|+..|+++|.++
T Consensus 82 ~~~i----~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 82 VFSI----FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEEE----E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CcEE----ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 2333 356789999999999999999999764
No 68
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.99 E-value=0.96 Score=42.33 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=45.9
Q ss_pred eEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEec------CCCCCcEEEEEeecC-------------
Q psy9950 507 CLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQI------GDSSTKFEIWFRKRK------------- 567 (732)
Q Consensus 507 ~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~------~~~~~~F~I~~~~~~------------- 567 (732)
+.|++.|. +.+|+..... .. ...-...+.|.|.++.+.... -.-++.|.|-...-.
T Consensus 20 ~RRWFvL~-g~~L~y~k~p--~d--~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~ 94 (122)
T cd01263 20 HRRWCALE-GGEIKYWKYP--DD--EKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCR 94 (122)
T ss_pred eEEEEEEe-CCEEEEEcCC--Cc--cccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccC
Confidence 45666666 5555444331 11 112334567888887665442 112455776432211
Q ss_pred CC--e-EEEEEcCCHHHHHHHHHHHHHH
Q psy9950 568 PN--E-TFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 568 ~~--~-~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
.. . -+.|.|.|.+++++|+++|+++
T Consensus 95 ~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 95 RGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred CceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 01 1 2678899999999999999763
No 69
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.97 E-value=2.7 Score=37.66 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=64.2
Q ss_pred cccccEEEEeC---CCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC---CCCcEEEEEee
Q psy9950 492 LRQNEFIVSQG---KGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD---SSTKFEIWFRK 565 (732)
Q Consensus 492 l~~g~l~v~~~---~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~---~~~~F~I~~~~ 565 (732)
|+.|.+.+... +|-.+++.++|-.+.|-.-|-... .. -|..|||.++.+.+...+ .+++|+++-..
T Consensus 2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~ee----KE----~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd 73 (110)
T cd01256 2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEE----KE----KKYMLPLDGLKLRDIEGGFMSRNHKFALFYPD 73 (110)
T ss_pred eeeeeEEeeccceecCCCcceEEEEecceeeeeccccc----cc----ccceeeccccEEEeecccccCCCcEEEEEcCc
Confidence 66777776432 255678888898888888775421 11 234789999999886542 35778886322
Q ss_pred c----CCCeEEEEEcCCHHHHHHHHHHHHH
Q psy9950 566 R----KPNETFTLQSMSEDIKQAWTDELSN 591 (732)
Q Consensus 566 ~----~~~~~~~L~A~S~eeK~~Wi~~I~~ 591 (732)
. +.-+++.|.|.|.++-+.|...+=+
T Consensus 74 ~rnvykd~k~lel~~~~~e~vdswkasflr 103 (110)
T cd01256 74 GRNVYKDYKQLELGCETLEEVDSWKASFLR 103 (110)
T ss_pred ccccccchheeeecCCCHHHHHHHHHHHHh
Confidence 1 2336899999999999999987744
No 70
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.65 E-value=3 Score=37.91 Aligned_cols=49 Identities=14% Similarity=0.323 Sum_probs=32.6
Q ss_pred eeeecceEEEEecC-CCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHH
Q psy9950 540 SMKMSDIGITAQIG-DSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELS 590 (732)
Q Consensus 540 ~i~l~~i~v~e~~~-~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~ 590 (732)
.|.|..+.+..... |-..+|+|... ....+++|||.|+.++..|++++.
T Consensus 53 ~~~l~sc~~r~~~~~dRRFCFei~~~--~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 53 TLTLKSCSRRKTESIDKRFCFDVEVE--EKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred EEeeeeccccccCCccceeeEeeeec--CCCCeEEEEecCHHHHHHHHHhhc
Confidence 34444454444333 34567887643 222579999999999999999874
No 71
>KOG0521|consensus
Probab=89.58 E-value=15 Score=45.02 Aligned_cols=36 Identities=36% Similarity=0.533 Sum_probs=31.0
Q ss_pred CCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 554 DSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 554 ~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
+..++|+|. .+.++|+|||.|+.+...|+..|+..|
T Consensus 333 drr~CF~ii----S~tks~~lQAes~~d~~~Wi~~i~nsi 368 (785)
T KOG0521|consen 333 DRRFCFEII----SPTKSYLLQAESEKDCQDWISALQNSI 368 (785)
T ss_pred cceeeEEEe----cCCcceEEecCchhHHHHHHHHHHHHH
Confidence 455778875 377899999999999999999999987
No 72
>PF15404 PH_4: Pleckstrin homology domain
Probab=89.26 E-value=3.9 Score=41.08 Aligned_cols=21 Identities=10% Similarity=0.347 Sum_probs=18.8
Q ss_pred eEEEEEcCCHHHHHHHHHHHH
Q psy9950 570 ETFTLQSMSEDIKQAWTDELS 590 (732)
Q Consensus 570 ~~~~L~A~S~eeK~~Wi~~I~ 590 (732)
++++|.|.|..||+.|+-.|.
T Consensus 162 ks~VF~ARSRqERD~WV~~I~ 182 (185)
T PF15404_consen 162 KSMVFMARSRQERDLWVLAIN 182 (185)
T ss_pred cEEEEEeccHHHHHHHHHHHH
Confidence 367999999999999999885
No 73
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=88.17 E-value=4.3 Score=36.91 Aligned_cols=87 Identities=17% Similarity=0.312 Sum_probs=53.3
Q ss_pred ccccccEEEEeCCCCeeEEEEEccCC-eEEEEEeeeCCCCCCCcceEEeeeeeecce-EEEEecCCCCCcEEEEEeecCC
Q psy9950 491 LLRQNEFIVSQGKGKKCLRHVFLFEE-LILFSKARRFPDRKNLDLYIYKHSMKMSDI-GITAQIGDSSTKFEIWFRKRKP 568 (732)
Q Consensus 491 ll~~g~l~v~~~~~kk~~r~vFLF~D-~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i-~v~e~~~~~~~~F~I~~~~~~~ 568 (732)
++.+|.+....|- -.+.|.++|=+. -|++..+.+ -+.|+.|+++.. .+... +...|.|. .+
T Consensus 13 Il~~g~v~K~kgl-~~kkR~liLTd~PrL~Yvdp~~---------~~~KGeI~~~~~l~v~~k---~~~~F~I~----tp 75 (104)
T PF14593_consen 13 ILKQGYVKKRKGL-FAKKRQLILTDGPRLFYVDPKK---------MVLKGEIPWSKELSVEVK---SFKTFFIH----TP 75 (104)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEETTTEEEEEETTT---------TEEEEEE--STT-EEEEC---SSSEEEEE----ET
T ss_pred EEEEEEEEEeece-EEEEEEEEEccCCEEEEEECCC---------CeECcEEecCCceEEEEc---cCCEEEEE----CC
Confidence 3345554443332 345777777777 788887752 368899999844 44332 33456664 56
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHHH
Q psy9950 569 NETFTLQSMSEDIKQAWTDELSNLLWK 595 (732)
Q Consensus 569 ~~~~~L~A~S~eeK~~Wi~~I~~~i~~ 595 (732)
.++|.|...+. ....|++.|++++..
T Consensus 76 ~RtY~l~d~~~-~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 76 KRTYYLEDPEG-NAQQWVEAIEEVKKQ 101 (104)
T ss_dssp TEEEEEE-TTS--HHHHHHHHHHHHHH
T ss_pred CcEEEEECCCC-CHHHHHHHHHHHHHH
Confidence 78999888554 467799999998744
No 74
>KOG3522|consensus
Probab=88.09 E-value=1.8 Score=51.82 Aligned_cols=102 Identities=11% Similarity=0.054 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHhcC---
Q psy9950 296 TQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTR--EDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCANL--- 370 (732)
Q Consensus 296 ~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~--~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~~~--- 370 (732)
+++-+-+++.-+++.+..|++. + ....|-.++.. ..+|..+ ++...|----.+..-+ ..+-+.+-...-.
T Consensus 11 ~Eq~yv~sL~t~vd~y~qpL~~-~-~~l~~~~~~~eif~~i~ell--~~he~fl~~l~s~~~~-w~~qq~vga~~v~~fS 85 (925)
T KOG3522|consen 11 REQSYVESLHTGVDRYVQPLKE-R-KVLIDPRDVDEIFQNIPELL--EIHEDFLEQLCSRDQQ-WDEQQKVGASFVYSFS 85 (925)
T ss_pred HHHHHHHHHHHHHHHhhccccc-c-ccccCCchHHHHHHhhHHHH--HHHHHHHHHHHhhhhh-hHHHHHHHHHHHHhhh
Confidence 4566778888888888888876 2 22222222221 1244432 3555564444444444 3444444443332
Q ss_pred CCchHHHHhhhhhhh---hhHHHhhhchHHHHHHHH
Q psy9950 371 PLSVGQCFLNHENKF---YLYALYNKNKPKSDALMT 403 (732)
Q Consensus 371 ~~~Ig~iFl~~~~~f---~~Y~~Y~~n~~~a~~~L~ 403 (732)
...|+++|.+|.+.| +.|..|.+ .+...+.++
T Consensus 86 k~~v~~~Y~~y~nn~~~A~~~l~~~~-rpaf~~Fl~ 120 (925)
T KOG3522|consen 86 KTAVLAAYSKYVNNFKRAKCALRNKK-RPAFSKFLE 120 (925)
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHhc-chHHHHHHH
Confidence 246999999999887 56777766 444444444
No 75
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.88 E-value=2.9 Score=38.95 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 566 RKPNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 566 ~~~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
..+..+|.|.|.|+.++++|++.|+.|
T Consensus 95 ~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 95 TNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 577899999999999999999999764
No 76
>KOG2059|consensus
Probab=85.13 E-value=3.6 Score=48.41 Aligned_cols=93 Identities=15% Similarity=0.284 Sum_probs=66.5
Q ss_pred ccccccccccEEEEeCCCC-------eeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCC----
Q psy9950 487 EQGRLLRQNEFIVSQGKGK-------KCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDS---- 555 (732)
Q Consensus 487 ~~grll~~g~l~v~~~~~k-------k~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~---- 555 (732)
.+...++.|.+++...+|+ -+.||+-|=+..|.+.|... .... ..||+++|...+..++.
T Consensus 560 p~~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~-----~q~~----~~Ipl~nI~avEklee~sF~~ 630 (800)
T KOG2059|consen 560 PQEPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPG-----KQPI----YTIPLSNIRAVEKLEEKSFKM 630 (800)
T ss_pred CCCCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCc-----cCcc----cceeHHHHHHHHHhhhhccCC
Confidence 4445566666655443322 35799999999999999763 2223 37899999877655543
Q ss_pred CCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 556 STKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 556 ~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
.+.|.|... ..+..|+|++-.|-+.|+++|+++
T Consensus 631 knv~qVV~~----drtly~Q~~n~vEandWldaL~kv 663 (800)
T KOG2059|consen 631 KNVFQVVHT----DRTLYVQAKNCVEANDWLDALRKV 663 (800)
T ss_pred CceEEEEec----CcceeEecCCchHHHHHHHHHHHH
Confidence 456766543 259999999999999999999886
No 77
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=84.65 E-value=13 Score=34.78 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=54.4
Q ss_pred cccccEEEEeCC-C------CeeEEEEEccCCeEEEE--EeeeCCCCCCCcceEEeeeeeecceEEEEecCC-C------
Q psy9950 492 LRQNEFIVSQGK-G------KKCLRHVFLFEELILFS--KARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD-S------ 555 (732)
Q Consensus 492 l~~g~l~v~~~~-~------kk~~r~vFLF~D~LL~~--K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~-~------ 555 (732)
++.|+.+....+ + +...|+++|=.+..-+. ..+ +...+ ..-.....+.+.++........ +
T Consensus 9 ~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~--p~~~~-~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~ 85 (123)
T PF12814_consen 9 LMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSN--PKSEN-PSESKAKSIRIESVTEVKDGNPSPPGLKKP 85 (123)
T ss_pred hhcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCC--CCccc-cccccccceEEeeeEEecCCCCCCcccccc
Confidence 456666654333 3 66788888765543332 221 11111 1112223456665543322111 1
Q ss_pred CCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 556 STKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 556 ~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
...+.|. ...+.+++.|.|.+.++.+.|++.|+-++
T Consensus 86 ~~~~si~--i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 86 DHNKSII--IVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred ccceEEE--EEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 1233333 34677899999999999999999998876
No 78
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.92 E-value=8.1 Score=35.43 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=31.0
Q ss_pred CCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHH
Q psy9950 554 DSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSN 591 (732)
Q Consensus 554 ~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ 591 (732)
.....|.|.+.......++.|.|.|+++.+.|++.|+.
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 45578998886544467899999999999999998864
No 79
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=83.73 E-value=2.6 Score=48.42 Aligned_cols=97 Identities=6% Similarity=0.086 Sum_probs=55.8
Q ss_pred cccccEEEEeCCCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEE--ecCCCCCcEEEEEeecCCC
Q psy9950 492 LRQNEFIVSQGKGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITA--QIGDSSTKFEIWFRKRKPN 569 (732)
Q Consensus 492 l~~g~l~v~~~~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e--~~~~~~~~F~I~~~~~~~~ 569 (732)
...|.+.......+.+.||+.|.++.+.+........ .+.. -.......+.++.... .....++.|.||++ ..
T Consensus 378 ~~~G~l~k~~~~~~wk~ry~~l~~~~l~~~~~~~~~~-~~~~-~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~---~~ 452 (478)
T PTZ00267 378 THGGYLYKYSSDMRWKKRYFYIGNGQLRISLSENPEN-DGVA-PKSVNLETVNDVFPVPEVYSQKHPNQLVLWFN---NG 452 (478)
T ss_pred ccceEEeccCCCcchhhheEEecCCceEEEecccccc-CCCC-CccccHHHhcccccccHHhcCCCCceEEEEec---CC
Confidence 4445444433334567889999998888875432111 1110 0000011122222111 12234677888764 35
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 570 ETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 570 ~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
+.+.++|.|++++++|+.+|+.++
T Consensus 453 ~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 453 QKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred cEEEEecCChHHHHHHHHHHHHHh
Confidence 689999999999999999999875
No 80
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=83.64 E-value=7.5 Score=36.00 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=46.2
Q ss_pred eEEEEEccCCeEEEEEeeeCCCCCCCc-ceEEe-----eeeeecceEEEEecCCC--CCcEEEEEeecCCCeEEEEEcCC
Q psy9950 507 CLRHVFLFEELILFSKARRFPDRKNLD-LYIYK-----HSMKMSDIGITAQIGDS--STKFEIWFRKRKPNETFTLQSMS 578 (732)
Q Consensus 507 ~~r~vFLF~D~LL~~K~kk~~~~~~~~-~y~~K-----~~i~l~~i~v~e~~~~~--~~~F~I~~~~~~~~~~~~L~A~S 578 (732)
+..|+.|-...|.|.|..+........ ..... ..|.|.........+-. .+.|.+. ...+..|.|+|.|
T Consensus 27 k~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~---~~dg~e~Lfqa~~ 103 (119)
T PF15410_consen 27 KQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYTKRKNVFRLR---TADGSEYLFQASD 103 (119)
T ss_dssp EEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBTTCSSEEEEE----TTS-EEEEE-SS
T ss_pred cEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccccCCeEEEEE---eCCCCEEEEECCC
Confidence 467999999999999874311111111 11122 23666655544432222 2334442 2456799999999
Q ss_pred HHHHHHHHHHHHHH
Q psy9950 579 EDIKQAWTDELSNL 592 (732)
Q Consensus 579 ~eeK~~Wi~~I~~~ 592 (732)
+++-+.|+..|+-+
T Consensus 104 ~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 104 EEEMNEWIDAINYA 117 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999764
No 81
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.15 E-value=15 Score=33.67 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=30.2
Q ss_pred CCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 554 DSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 554 ~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
|-++.|.|... ....+..|.|.++.+|+.|+.+|.+-|
T Consensus 73 DiP~IF~I~~~--~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 73 EIPKIFQILYA--NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred cCCeEEEEEeC--CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 44677888663 334789999999999999999998765
No 82
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=80.62 E-value=17 Score=32.22 Aligned_cols=67 Identities=12% Similarity=0.266 Sum_probs=48.3
Q ss_pred EEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCC--CCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 518 ILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDS--STKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 518 LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~--~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
+.+.|.+.. ....|......+|.++...+..+.+ ...|.+.|. +.|...|.|.++|..++..|-++-
T Consensus 20 v~l~k~K~~----~~g~f~i~ktW~L~eL~~I~~~~~~~~~~~F~l~~~-----k~y~W~a~s~~Ek~~Fi~~L~k~~ 88 (91)
T PF15277_consen 20 VRLHKVKQN----DNGSFQIGKTWDLDELKAIDGINPDKDTPEFDLTFD-----KPYYWEASSAKEKNTFIRSLWKLY 88 (91)
T ss_dssp EEEEEEEE-----CCS-EEEEEEEEGGG--EEEE-SSS--TTEEEEESS-----SEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEec----CCCcEEEeeEEehhhceeeeeecCCCCCcCEEEEEC-----CCcEEEeCCHHHHHHHHHHHHHHh
Confidence 555666542 1224999999999999988876654 467888763 399999999999999999887764
No 83
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=79.90 E-value=18 Score=33.14 Aligned_cols=31 Identities=10% Similarity=0.276 Sum_probs=26.5
Q ss_pred cCCCeEEEEEcCCHHHHHHHHHHHHHHHHHH
Q psy9950 566 RKPNETFTLQSMSEDIKQAWTDELSNLLWKQ 596 (732)
Q Consensus 566 ~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~q 596 (732)
+.....+.|.|.|..+++.|++.|+.+|...
T Consensus 76 ~T~~G~vEfec~~~~~~k~W~~gI~~mL~~~ 106 (110)
T PF08458_consen 76 KTAQGVVEFECDSQREYKRWVQGIQHMLSQV 106 (110)
T ss_pred EecCcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence 4556789999999999999999999988443
No 84
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=71.96 E-value=54 Score=30.65 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=29.4
Q ss_pred CCCCcEEEEEee---cCCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 554 DSSTKFEIWFRK---RKPNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 554 ~~~~~F~I~~~~---~~~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
|-++.|.|...- ..+..+..|.|.|+.||++|+..|+++
T Consensus 77 DiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 77 DIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred cCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 345677775432 124478889999999999999999886
No 85
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=69.21 E-value=39 Score=28.90 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHH
Q psy9950 298 KNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGE 363 (732)
Q Consensus 298 ~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~ 363 (732)
......++|-..-|++|.+.|..+...|............+..-+..|-...+.+-..| ..|-..
T Consensus 26 ~~l~~~~keRa~lE~~Yak~L~kl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~a~~h-~~~a~~ 90 (91)
T PF00611_consen 26 EELASFFKERASLEEEYAKSLQKLAKKFKKKMKSSQEYGTLKNAWDSLLEETEQIAEQH-SKLAEN 90 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHHHH-HHHHhh
Confidence 45567888889999999999999999999887644333334455566666677777777 465544
No 86
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=68.49 E-value=16 Score=43.76 Aligned_cols=99 Identities=10% Similarity=0.146 Sum_probs=55.8
Q ss_pred cccccEEEEeCC--C--CeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCC---CCCcEEEEEe
Q psy9950 492 LRQNEFIVSQGK--G--KKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGD---SSTKFEIWFR 564 (732)
Q Consensus 492 l~~g~l~v~~~~--~--kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~---~~~~F~I~~~ 564 (732)
.++|++.....+ | -...||++|=..++-+.|.+- .. + .--+|.-+-=.++.|.+.-.. ...-|.+.+.
T Consensus 5 ~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P--~~-~--~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Y 79 (719)
T PLN00188 5 VYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKP--QD-N--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY 79 (719)
T ss_pred eEeeEEEEEcccccccccceeEEEEEecchhhhcccCC--cc-c--cccceeeccCCCceEeecCceEEcCceEEEEEEe
Confidence 456766543222 1 134788888888888888752 21 1 111111111123333332111 1122333332
Q ss_pred -ecCCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q psy9950 565 -KRKPNETFTLQSMSEDIKQAWTDELSNLLWK 595 (732)
Q Consensus 565 -~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~ 595 (732)
.....+..+|-|.+.+|..+|+++|++++.+
T Consensus 80 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q 111 (719)
T PLN00188 80 NKKEKYHRITMAAFNIQEALIWKEKIESVIDQ 111 (719)
T ss_pred cCCCccccEEEecCCHHHHHHHHHHHHHHHhh
Confidence 2345578999999999999999999999853
No 87
>KOG3751|consensus
Probab=68.36 E-value=40 Score=38.77 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.0
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHHHHH
Q psy9950 570 ETFTLQSMSEDIKQAWTDELSNLLWK 595 (732)
Q Consensus 570 ~~~~L~A~S~eeK~~Wi~~I~~~i~~ 595 (732)
.-=.|+|.++..+..|+.+|+-+..-
T Consensus 401 ~lk~lCAEDe~t~~~WltAiRl~KyG 426 (622)
T KOG3751|consen 401 FLKMLCAEDEQTRTCWLTAIRLLKYG 426 (622)
T ss_pred ceeeeecccchhHHHHHHHHHHHHHH
Confidence 34568999999999999999876433
No 88
>PF15406 PH_6: Pleckstrin homology domain
Probab=66.50 E-value=7.5 Score=35.46 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=34.4
Q ss_pred eeeeeecceEEEEecCCCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHH
Q psy9950 538 KHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELS 590 (732)
Q Consensus 538 K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~ 590 (732)
-+.|.|.|+. +...+...+|.+-+ .+...+|+|.|..+|+.|+.+|.
T Consensus 64 ~GiinLadas--e~~~~g~~kF~f~~----~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 64 SGIINLADAS--EPEKDGSNKFHFKI----KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred cceEehhhcc--ccccCCCceEEEEe----CCceeeeecCCHHHhccHHHHhh
Confidence 3467777764 33445567777643 45688999999999999999885
No 89
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=59.88 E-value=1.1e+02 Score=29.74 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=48.7
Q ss_pred CCcchHHHHHHHHHHHhHHHHHHHHhHHhhhhhhhhhhhhhh---hHHHHHHHHhhhhhcC
Q psy9950 24 GGSGLKDLARNLRQHLRGFSERLEDTRERLEDTSRCYYLLDR---AYEWALEAMKYISRVK 81 (732)
Q Consensus 24 ~~~~~~~~~~~fk~~L~~F~~rle~~~~~Le~~~~l~~f~dq---a~~w~~e~~~~l~~~~ 81 (732)
.....+..+..+...-+.+...++.++..|+.....+.++.+ ...|+.+....+....
T Consensus 73 ~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~l~~wl~~~e~~l~~~~ 133 (213)
T cd00176 73 DAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASED 133 (213)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 557788889999999999999999999999999999999876 4588888877776544
No 90
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=55.05 E-value=17 Score=42.14 Aligned_cols=36 Identities=19% Similarity=0.508 Sum_probs=30.5
Q ss_pred CCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 555 SSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 555 ~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
..+.|.++|+ .++.+.|+|.++++++.|+.+|++++
T Consensus 454 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 454 AAHVFAVAFK---TGRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CCcEEEEEec---CCcEEEEecCCchhHHHHHHHHHHhc
Confidence 3567888864 56799999999999999999998874
No 91
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=51.14 E-value=1.3e+02 Score=27.95 Aligned_cols=89 Identities=12% Similarity=0.249 Sum_probs=49.6
Q ss_pred cccccEEEEeCCCCeeEEEEEccCC-eEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEec-------CCCCCcEEEEE
Q psy9950 492 LRQNEFIVSQGKGKKCLRHVFLFEE-LILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQI-------GDSSTKFEIWF 563 (732)
Q Consensus 492 l~~g~l~v~~~~~kk~~r~vFLF~D-~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~-------~~~~~~F~I~~ 563 (732)
+++|++.-...+.+...||.+..+. .|-+-+.- .+. .|-..|||++|.-.+.. +..+++|+|.
T Consensus 1 lkEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e-----~~s---kyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~- 71 (117)
T cd01239 1 LKEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEE-----SGS---RYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIR- 71 (117)
T ss_pred CccceEEEEecCccceeeeEEEecCCeEEEEEcC-----CCC---eeeEEeehHHheEEeccCCCcCCCCCCCcEEEEE-
Confidence 3567765544443334466665554 33333322 122 23357999998766433 2356789985
Q ss_pred eecCCCeEEEEEc--------------------CCHHHHHHHHHHHHHH
Q psy9950 564 RKRKPNETFTLQS--------------------MSEDIKQAWTDELSNL 592 (732)
Q Consensus 564 ~~~~~~~~~~L~A--------------------~S~eeK~~Wi~~I~~~ 592 (732)
....+|.+.. -..+..+.|..+|++|
T Consensus 72 ---T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 72 ---TTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred ---ecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 2334554433 2356778998888763
No 92
>KOG3723|consensus
Probab=50.91 E-value=8.2 Score=44.42 Aligned_cols=98 Identities=19% Similarity=0.348 Sum_probs=63.3
Q ss_pred ccccccccccccEEEEeCC----CCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecC------C
Q psy9950 485 LKEQGRLLRQNEFIVSQGK----GKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIG------D 554 (732)
Q Consensus 485 L~~~grll~~g~l~v~~~~----~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~------~ 554 (732)
+.+.|+.+.+|-+.-..|+ .+.+.||+-|=.-.|.|.|-+. ++... . .+|.+..|.-+..++ .
T Consensus 729 vn~~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s-~~dS~--~----~~IDl~~IRSVk~v~~kr~~rs 801 (851)
T KOG3723|consen 729 VNQDGQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKS-KDDSD--D----CPIDLSKIRSVKAVAKKRRDRS 801 (851)
T ss_pred ecCCCCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCC-CCCCC--C----CCccHHHhhhHHHHHhhhhhcc
Confidence 4566777888877654444 2445677777666777666442 22111 1 456666664333221 1
Q ss_pred CCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHH
Q psy9950 555 SSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLL 593 (732)
Q Consensus 555 ~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i 593 (732)
-+..|+|+ ...++|+|.|+++...++|+..|+=++
T Consensus 802 lpKAFEIF----TAD~T~ILKaKDeKNAEEWlqCL~Iav 836 (851)
T KOG3723|consen 802 LPKAFEIF----TADKTYILKAKDEKNAEEWLQCLNIAV 836 (851)
T ss_pred cchhhhee----ecCceEEeecccccCHHHHHHHHHHHH
Confidence 24679996 345789999999999999999998775
No 93
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=45.64 E-value=68 Score=29.62 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=26.3
Q ss_pred CCcEEEEEeecC-----CCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 556 STKFEIWFRKRK-----PNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 556 ~~~F~I~~~~~~-----~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
+..|.+.+...+ ...--.|.|.+++.+..|+.+|+=+
T Consensus 66 PTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 66 PTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred CCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 445555554422 2345679999999999999999865
No 94
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=39.34 E-value=34 Score=31.32 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=45.8
Q ss_pred eeEEEEEccCCeEEEEEeeeCCCCCCCcceEEeeeeeecceEEEEecCCCCCcEEEEEeecCCCeEEEEEcCCHHHHHHH
Q psy9950 506 KCLRHVFLFEELILFSKARRFPDRKNLDLYIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDIKQAW 585 (732)
Q Consensus 506 k~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~W 585 (732)
-+.||+.||-+-|=+ ... ...+....++-.. +.++......-...++..|-+ +++..++|++.++-+-.+|
T Consensus 20 WQ~Ry~~LfPNRLE~-~~~---~~~~~~eLi~M~~--i~~V~~e~~~iK~~~CI~ik~---k~~~k~vlt~~d~i~l~qW 90 (116)
T cd01240 20 WQTRYFKLYPNRLEL-YGE---SEANKPELITMDQ--IEDVSVEFQQIKEENCILLKI---RDEKKIVLTNSDEIELKQW 90 (116)
T ss_pred HHHHHheeCcceeee-ccc---ccccCCcEEEeeh--hhhcchhheeeccCceEEEEE---cCCceEEEecCCcHHHHHH
Confidence 356899999998887 221 1112222222111 222221111112334444433 3467899999999999999
Q ss_pred HHHHHHHH
Q psy9950 586 TDELSNLL 593 (732)
Q Consensus 586 i~~I~~~i 593 (732)
...|+.+.
T Consensus 91 ~~elr~a~ 98 (116)
T cd01240 91 KKELRDAH 98 (116)
T ss_pred HHHHHHHH
Confidence 99999985
No 95
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=38.65 E-value=52 Score=29.81 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=26.1
Q ss_pred CCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHH
Q psy9950 555 SSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSN 591 (732)
Q Consensus 555 ~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ 591 (732)
..+.|.+- ..++..|+|.|.++++.+.|+.+|+.
T Consensus 73 ~~nTFvLK---~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 73 NLYTFVLK---VDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccEEEEE---ecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 34455542 34456999999999999999999975
No 96
>PF15408 PH_7: Pleckstrin homology domain
Probab=37.77 E-value=28 Score=30.45 Aligned_cols=83 Identities=12% Similarity=0.154 Sum_probs=47.5
Q ss_pred CCCeeEEEEEccCCeEEEEEeeeCCCCCCCcceEEee---eeeecceEEEEecCC-CCCcEEEEEeecCCCeEEEEEcCC
Q psy9950 503 KGKKCLRHVFLFEELILFSKARRFPDRKNLDLYIYKH---SMKMSDIGITAQIGD-SSTKFEIWFRKRKPNETFTLQSMS 578 (732)
Q Consensus 503 ~~kk~~r~vFLF~D~LL~~K~kk~~~~~~~~~y~~K~---~i~l~~i~v~e~~~~-~~~~F~I~~~~~~~~~~~~L~A~S 578 (732)
++.-+.|.+.|=...+++...|.. .-.+.|.+.. .+|+.+.. +.... .-..|.|... .-..+.+.+.|+|
T Consensus 9 ~~si~rRF~~L~~K~~~~~~~KGG---~~L~sF~L~~s~~s~Pm~~~~--~A~~N~Gi~A~G~L~~-~~~~~~~~~FA~S 82 (104)
T PF15408_consen 9 DSSIQRRFVMLRSKQFNMYEDKGG---QYLCSFQLSSSVVSHPMVNFS--QAVPNLGINAFGFLMY-SPSRRHVQCFASS 82 (104)
T ss_pred cchHHHHHHhhhhceeEEecccCC---ceeeeeehhhhhhhccccccc--ccCCCCCeeEEEEEEe-cCCcchhhhhhhH
Confidence 334556777788888888876631 1123333332 23333221 11111 1134666433 3445788999999
Q ss_pred HHHHHHHHHHHHH
Q psy9950 579 EDIKQAWTDELSN 591 (732)
Q Consensus 579 ~eeK~~Wi~~I~~ 591 (732)
.+..+.|++.++.
T Consensus 83 ~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 83 KKVCQSWIQVMNS 95 (104)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
No 97
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=37.51 E-value=4.9e+02 Score=27.03 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chhhhhhHHHHhCCHHHHHHHHHHHHHHHHHH
Q psy9950 300 LLFIMREMIQTERDYVKSLEYVILNYIPELTREDI-PQALRGQRNVIFGNIEKIYEFHSQHFLGELEQ 366 (732)
Q Consensus 300 Rq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~-p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~ 366 (732)
-...+.|=..-|++|.+.|..+.+.|..-..+.+. ...+..-+..|....+.|...| ..|...|..
T Consensus 24 ~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~~~~~~gs~~~a~~~il~~~e~lA~~h-~~~a~~L~~ 90 (234)
T cd07652 24 FATFLKKRAAIEEEHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLADNG-LRFAKALNE 90 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34455666677999999999999999876653221 2223345667777788888888 688888854
No 98
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=35.61 E-value=2.5e+02 Score=24.89 Aligned_cols=52 Identities=17% Similarity=0.475 Sum_probs=34.4
Q ss_pred eEEeeeeeecceEEEEecCCCCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 535 YIYKHSMKMSDIGITAQIGDSSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 535 y~~K~~i~l~~i~v~e~~~~~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
-..|+.||.+.+.+..... +...|.| ..+.++|.|.=. ......|++.|.++
T Consensus 36 ~~~KgeIp~s~~~l~v~~~-~~~~F~I----~Tp~rty~leD~-~~~a~~W~~~I~~~ 87 (89)
T cd01262 36 KVVKGEIPWSDVELRVEVK-NSSHFFV----HTPNKVYSFEDP-KGRASQWKKAIEDL 87 (89)
T ss_pred CeEEeEecccccceEEEEe-cCccEEE----ECCCceEEEECC-CCCHHHHHHHHHHH
Confidence 4678889988754443221 2234444 467789988644 46778899999876
No 99
>KOG0705|consensus
Probab=34.20 E-value=41 Score=39.16 Aligned_cols=39 Identities=15% Similarity=0.400 Sum_probs=32.0
Q ss_pred CCCcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHHHHHHHH
Q psy9950 555 SSTKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELSNLLWKQ 596 (732)
Q Consensus 555 ~~~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~~~i~~q 596 (732)
.+.+|+|. .....+..|.|.+-|+|++|+.+|...|...
T Consensus 444 Ede~F~IV---s~tgqtWhFeAtt~EERdaWvQai~sqIlaS 482 (749)
T KOG0705|consen 444 EDECFEIV---SNTGQTWHFEATTYEERDAWVQAIQSQILAS 482 (749)
T ss_pred ccceEEEe---ccccchhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 44578775 3456789999999999999999999988665
No 100
>KOG1451|consensus
Probab=32.52 E-value=9.2e+02 Score=28.71 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=51.8
Q ss_pred cccccccccccccEEEEeCC--CCee-EEEEEccCCeEEEEE-e-e-eCC-CCCCCcceEEeeeeeecceEEEEecCCCC
Q psy9950 484 NLKEQGRLLRQNEFIVSQGK--GKKC-LRHVFLFEELILFSK-A-R-RFP-DRKNLDLYIYKHSMKMSDIGITAQIGDSS 556 (732)
Q Consensus 484 ~L~~~grll~~g~l~v~~~~--~kk~-~r~vFLF~D~LL~~K-~-k-k~~-~~~~~~~y~~K~~i~l~~i~v~e~~~~~~ 556 (732)
.-+-.+...++|.+.+.+.. |+.. .+||.-=.+-=+|+- + . +.. +.+....+++|....- -++. -|..
T Consensus 258 e~k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RR----ktdS-IdKR 332 (812)
T KOG1451|consen 258 EDKRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRR----KTDS-IDKR 332 (812)
T ss_pred cccCCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccC----cccc-cccc
Confidence 34556778899988886554 3322 233332222222221 1 1 111 1122233555543221 1111 1234
Q ss_pred CcEEEEEeecCCCeEEEEEcCCHHHHHHHHHHHH
Q psy9950 557 TKFEIWFRKRKPNETFTLQSMSEDIKQAWTDELS 590 (732)
Q Consensus 557 ~~F~I~~~~~~~~~~~~L~A~S~eeK~~Wi~~I~ 590 (732)
++|-+-. ......+++||-|++++..|+++..
T Consensus 333 FCFDve~--~erpgviTmQALSE~drrlWmeAMD 364 (812)
T KOG1451|consen 333 FCFDVEV--EERPGVITMQALSEKDRRLWMEAMD 364 (812)
T ss_pred eeeeeee--cccCCeeehHhhhhhHHHHHHHHhc
Confidence 5666544 3344799999999999999998754
No 101
>KOG0517|consensus
Probab=30.46 E-value=4e+02 Score=35.89 Aligned_cols=54 Identities=20% Similarity=0.360 Sum_probs=45.8
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHhHHhhhhhhhhhhh---hhhhHHHHHHHHhhhhh
Q psy9950 26 SGLKDLARNLRQHLRGFSERLEDTRERLEDTSRCYYL---LDRAYEWALEAMKYISR 79 (732)
Q Consensus 26 ~~~~~~~~~fk~~L~~F~~rle~~~~~Le~~~~l~~f---~dqa~~w~~e~~~~l~~ 79 (732)
+++...+..+.+.....+..+..||.+||.+-+||.| ++.+-.|+.+|-.-+.-
T Consensus 599 ~vi~~R~~~le~~y~eL~~laa~RRarLE~sr~l~~F~~d~~EeEaWlkEkeqi~~s 655 (2473)
T KOG0517|consen 599 QVIQERVAHLEQCYQELVELAAARRARLEESRRLWQFLWDVEEEEAWLKEKEQILSS 655 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6777888888888888888999999999999999999 55677999999766653
No 102
>KOG0932|consensus
Probab=26.56 E-value=72 Score=37.10 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHH
Q psy9950 568 PNETFTLQSMSEDIKQAWTDELSNL 592 (732)
Q Consensus 568 ~~~~~~L~A~S~eeK~~Wi~~I~~~ 592 (732)
.-..|.|||+|.++-+.|+..|+-+
T Consensus 592 dwrv~LFQaps~eEmqsWi~rIN~v 616 (774)
T KOG0932|consen 592 DWRVFLFQAPSQEEMQSWIERINLV 616 (774)
T ss_pred cceeEEEeCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999865
No 103
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.03 E-value=7.8e+02 Score=25.76 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHh
Q psy9950 298 KNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCA 368 (732)
Q Consensus 298 ~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~ 368 (732)
+.....++|=..-|++|.+.|..+...|..... ...+..-...|..-.+.|...| ..|-..|....
T Consensus 22 ~el~~f~keRa~IEe~Yak~L~kLakk~~~~~~----~gt~~~~w~~i~~~~e~~a~~H-~~l~~~L~~~~ 87 (261)
T cd07648 22 KELADFLRERATIEETYSKALNKLAKQASNSSQ----LGTFAPLWLVLRVSTEKLSELH-LQLVQKLQELI 87 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----cCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 345667778888999999999999987755221 1223345667777788899999 68887776443
No 104
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=26.01 E-value=5.5e+02 Score=26.58 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHH
Q psy9950 297 QKNLLFIMREMIQTERDYVKSLEYVILNYIPELTRED-IPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQC 367 (732)
Q Consensus 297 ~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~-~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~ 367 (732)
-......+.|-..-|++|.+.|..+...|........ ....+..-...|...++.+-..| ..|-..|...
T Consensus 21 ~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H-~~~a~~l~~~ 91 (251)
T cd07653 21 LERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQH-ELIAENLNSN 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3456677888889999999999999998876543221 11122355677888888888888 5776666543
No 105
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.05 E-value=7.4e+02 Score=25.65 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHh
Q psy9950 298 KNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCA 368 (732)
Q Consensus 298 ~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~ 368 (732)
+.....+.|=..-|++|.+.|..|...+.+. .-+..+..-...|....+.|-..| ..|-..|..-.
T Consensus 22 ~el~~f~keRa~iE~eYak~L~kLak~~~~~----~e~gsl~~aw~~i~~e~e~~a~~H-~~la~~L~~~v 87 (239)
T cd07647 22 KELEDFLKQRAKAEEDYGKALLKLSKSAGPG----DEIGTLKSSWDSLRKETENVANAH-IQLAQSLREEA 87 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445567777888999999999998765321 112233455778888899999999 68888887754
No 106
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=24.86 E-value=3.6e+02 Score=28.41 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHHh
Q psy9950 295 KTQKNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQCA 368 (732)
Q Consensus 295 k~~~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~~ 368 (732)
+.-......+.|=..-|++|.+.|..+..-|.+.+.....+..+..-...|+...+.|-..| ..+-..|..-+
T Consensus 19 ~~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~~~~e~e~~a~~H-~~l~~~L~~~v 91 (258)
T cd07655 19 KLCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLIEKGPEYGTLETAWKGLLSEAERLSELH-LSIRDKLLNDV 91 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33445667788888899999999999999988766544334445566788999999999999 68888776654
No 107
>KOG0517|consensus
Probab=22.57 E-value=3.4e+02 Score=36.50 Aligned_cols=66 Identities=20% Similarity=0.461 Sum_probs=49.6
Q ss_pred hhhcHHHHhcCCCCCCCCCCCcchHHHHHHHHHHHhHHHHHHHHhHHhhhhhhhhhhhhhhh---HHHHHHHHhhhh
Q psy9950 5 KAGDLLEECGGSSAPGVTTGGSGLKDLARNLRQHLRGFSERLEDTRERLEDTSRCYYLLDRA---YEWALEAMKYIS 78 (732)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fk~~L~~F~~rle~~~~~Le~~~~l~~f~dqa---~~w~~e~~~~l~ 78 (732)
.|.+|+.|-+ | +.+..+.-+.....+-+.....++.++.+|+++..+|+|+.-| -.|+.+-+..++
T Consensus 692 ~G~~Lvae~~----p----g~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~~~~QffaDAdd~~sWl~d~~rlvs 760 (2473)
T KOG0517|consen 692 EGEELVAEGH----P----GSDQIQERAAEIREQWQRLEALVAGRGRRLQEARELYQFFADADDAESWLRDALRLVS 760 (2473)
T ss_pred HHHHHHhcCC----C----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 4556655542 4 4455677677777777777788899999999999999997654 489998887765
No 108
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=21.24 E-value=4.1e+02 Score=28.23 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhHHHHhCCHHHHHHHHHHHHHHHHHHH
Q psy9950 298 KNLLFIMREMIQTERDYVKSLEYVILNYIPELTREDIPQALRGQRNVIFGNIEKIYEFHSQHFLGELEQC 367 (732)
Q Consensus 298 ~kRq~iI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~p~~l~~~~~~IF~NIe~I~~~Hs~~fL~~Le~~ 367 (732)
......+.|=-.-|+.|.+.|..+..-|...+....-+..+..-...|..-++.|-..| ..+-..|..-
T Consensus 22 ~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H-~~la~~L~~e 90 (258)
T cd07680 22 NDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELH-QEVKNNLLNE 90 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 34456677777889999999999999888654332333445566888999999999999 5776666443
No 109
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=20.16 E-value=3.2e+02 Score=27.79 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=13.4
Q ss_pred hhhhhhhhHhhHHhhHHHHHHHHhc
Q psy9950 423 LASYLLKPVQRMGKYALLLQQLMKA 447 (732)
Q Consensus 423 L~slLikPVQRI~rY~LLLkeLlK~ 447 (732)
+..-++.|+.++..|---++..++.
T Consensus 94 i~~~V~~P~~~~~~~~~~i~k~IkK 118 (216)
T cd07599 94 FEERVILPAKELKKYIKKIRKTIKK 118 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666655444444443
Done!