BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9954
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQ-RTHFDTRPYKC 70
F C K++SRLENLK H RSHTGE+PY C +EGC KAFSN+SDRAKHQ RTH + +PY C
Sbjct: 72 FEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131
Query: 71 MYKGCTKRYTDPSSLRKHAK 90
GCTKRYTDPSSLRKH K
Sbjct: 132 KLPGCTKRYTDPSSLRKHVK 151
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
FP C K F+R ENLKIH+R+HTGE+P+ C +EGC + F+NSSDR KH H
Sbjct: 95 FPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMY 72
P K+F L H R HTGE+P+ C + GC K F+ S + H+RTH +P+KC +
Sbjct: 66 PREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125
Query: 73 KGCTKRYTDPSSLRKHAKNHNHDHLTPA 100
+GC +R+ + S +KH H D P+
Sbjct: 126 EGCDRRFANSSDRKKHMHVHTSDKSGPS 153
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMY 72
P C K+FS+ NL+ HQR+HTGE+PY C C K+FS SSD KHQRTH +PYKC
Sbjct: 8 PECGKSFSQSSNLQKHQRTHTGEKPYKCPE--CGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 73 KGCTKRYTDPSSLRKHAKNHN 93
C K ++ L +H + H
Sbjct: 66 --CGKSFSRSDHLSRHQRTHQ 84
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGER 36
P C K+FSR ++L HQR+H ++
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMY 72
P C K+FSR ++L HQR+HTGE+PY C C K+FS+ D +HQRTH +PYKC
Sbjct: 25 PECGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPE 82
Query: 73 KGCTKRYTDPSSLRKHAKNH 92
C K ++ ++LR H + H
Sbjct: 83 --CGKSFSQRANLRAHQRTH 100
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMY 72
P C K+FS+ NL+ HQR+HTGE+PY+C C K+FS + HQRTH +PYKC
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 73 KGCTKRYTDPSSLRKHAKNH 92
C K ++ +L H + H
Sbjct: 139 --CGKSFSREDNLHTHQRTH 156
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMY 72
P C K+FS+L +L+ HQR+HTGE+PY C C K+FS + HQRTH +PYKC
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPYKCPE 166
Query: 73 KGCTKRYTDPSSLRKHAKNH 92
C K ++ +L H + H
Sbjct: 167 --CGKSFSRRDALNVHQRTH 184
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGER 36
P C K+FSR + L +HQR+HTG++
Sbjct: 165 PECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 44/78 (56%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C KAF LK HQ HTGE+P+ CT+EGC K FS + H R H RPY C + G
Sbjct: 40 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 99
Query: 75 CTKRYTDPSSLRKHAKNH 92
C K++ ++L+ H H
Sbjct: 100 CNKKFAQSTNLKSHILTH 117
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
F C+ F C K FS NL+ H R HTG+RPY C ++GC+K F+ S++ H TH
Sbjct: 63 FQCT-FEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 13 PH--CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
PH C K F ++ H +H G R + C C KAF SS +HQ H +P++C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 71 MYKGCTKRYTDPSSLRKHAKNHNHD 95
++GC KR++ +LR H + H D
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGD 90
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 63 FDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ R C +KGCTK + D S++RKH H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTH 30
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
F+C+ +P C K + +L +L++H R HTGE+PY C ++ C + FS S +HQR H +
Sbjct: 7 FMCA-YPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 67 PYKCMYKGCTKRYTDPSSLRKHAKNH 92
P++C K C ++++ L+ H + H
Sbjct: 66 PFQC--KTCQRKFSRSDHLKTHTRTH 89
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCM 71
F C + FSR + LK HQR HTG +P+ C + C + FS S H RTH +P+ C
Sbjct: 41 FKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
Query: 72 YKGCTKRYTDPSSLRKHAKNH 92
+ C K++ L +H H
Sbjct: 99 WPSCQKKFARSDELVRHHNMH 119
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+RP+ C Y GC+K + S H R H +PY+C +K C +R++ L++H + H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 64 DTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ RP+ C Y GC KRY S L+ H++ H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKH 31
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCM 71
+P C K +++ +LK H R+HTGE+PY CT+EGC F+ S + +H R H +P++C
Sbjct: 20 YPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG 79
Query: 72 YKGCTKRYTDPSSLRKHAKNHN 93
C + ++ L H K H
Sbjct: 80 V--CNRSFSRSDHLALHMKRHQ 99
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
R + C Y GC K ++ SS H RTH +PYKC ++GC R+ L +H + H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
++CS F C A+++ L+ H HTGE+P+ C EGC K F++ +H TH +
Sbjct: 4 YICS-FADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 67 PYKCMYKGCTKRYTDPSSLRKH 88
+ C GC R+T ++++KH
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKH 84
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ Y C++ C A++ + H H +P+ C +GC K +T L +H+ H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C K +++ +LK H R+HTGE+PY C ++GC F+ S + +H R H RP++C +
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QK 71
Query: 75 CTKRYTDPSSLRKHAKNH 92
C + ++ L H K H
Sbjct: 72 CDRAFSRSDHLALHMKRH 89
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 38 YSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
++C Y GC K ++ SS H RTH +PY C + GC ++ L +H + H
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
C F+R + L H R HTG RP+ C + C +AFS S A H + HF
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQC--QKCDRAFSRSDHLALHMKRHF 90
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C K +++ +LK H R+HTGE+PY C ++GC F+ S + +H R H RP++C +
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QK 70
Query: 75 CTKRYTDPSSLRKHAKNH 92
C + ++ L H K H
Sbjct: 71 CDRAFSRSDHLALHMKRH 88
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 38 YSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
++C Y GC K ++ SS H RTH +PY C + GC ++ L +H + H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
C F+R + L H R HTG RP+ C + C +AFS S A H + HF
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQC--QKCDRAFSRSDHLALHMKRHF 89
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 4 IFDFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
I +CS P C K + + +LK H R+HTGE+P+SC+++GC + F+ S + ++H+RTH
Sbjct: 15 IRSHICSH-PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
R + C++ GC K + SS H RTH +P+ C +KGC +R+ L +H + H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
Length = 190
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
++CS F C A+++ L+ H HTGE+P+ C EGC K F++ +H TH +
Sbjct: 13 YICS-FADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 67 PYKCMYKGCTKRYTDPSSLRKH 88
+ C GC R+T ++++KH
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKH 93
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 17 KAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCT 76
K F+R N+KI Y C +E C KAF + HQ +H PY+C ++GC
Sbjct: 92 KHFNRFHNIKI--------CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD 143
Query: 77 KRYTDPSSLRKHAKNH 92
KR++ PS L++H K H
Sbjct: 144 KRFSLPSRLKRHEKVH 159
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 4 IFDFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
I ++C F +C KAF + LK+HQ SHT + PY C +EGC K FS S +H++ H
Sbjct: 102 ICVYVC-HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ Y C++ C A++ + H H +P+ C +GC K +T L +H+ H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 10 SQFPH----CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT 65
S PH C K FSR + LK H R HTG +PY C + C A ++SS KH R H D
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDE 62
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNHNHD 95
RP+KC C + S L H ++H D
Sbjct: 63 RPFKCQI--CPYASRNSSQLTVHLRSHTGD 90
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
F +C KAF + LK+HQ SHT + PY C +EGC K FS S +H++ H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 38 YSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
Y C +E C KAF + HQ +H PY+C ++GC KR++ PS L++H K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
F +C KAF + LK+HQ SHT + PY C +EGC K FS S +H++ H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 38 YSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
Y C +E C KAF + HQ +H PY+C ++GC KR++ PS L++H K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
C KAFSR L HQR HTGE+PY C C KAFS +S HQR H
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIH 65
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
E+PY C C KAFS SS +HQR H +PYKC+ C K ++ S L H + H
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIH 65
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT 65
+F+C C + F++ NL IH+R+HT ERPY+C + CHKAF H+ H
Sbjct: 17 EFICK---FCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKE 71
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+P+KC + C K + +L H H
Sbjct: 72 KPFKC--QECGKGFCQSRTLAVHKTLH 96
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C K+F R L H H+ RPY C Y C K F SD KH H +P+KC
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQV-- 62
Query: 75 CTKRYTDPSSLRKHAKNHN 93
C K ++ S+L H++ H
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+C K F + ++K H HTGE+P+ C + C KAFS SS+ H R H
Sbjct: 34 YCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHSRKH 80
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTG 34
C KAFS+ NL H R HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C + FSR + L H R HTG++P+ C C + FS S H RTH +P+ C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI-- 67
Query: 75 CTKRYTDPSSLRKHAKNH 92
C +++ ++H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
C + FSR ++L H R+HTGE+P++C + C + F+ S +R +H + H
Sbjct: 40 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHL 86
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
ERPY+C E C + FS S + +H R H +P++C + C + ++ L H + H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 58
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C + FSR + L H R HTG++P+ C C + FS S H RTH +P+ C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI-- 66
Query: 75 CTKRYTDPSSLRKHAKNH 92
C +++ ++H K H
Sbjct: 67 CGRKFARSDERKRHTKIH 84
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
C + FSR ++L H R+HTGE+P++C + C + F+ S +R +H + H
Sbjct: 39 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHL 85
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
ERPY+C E C + FS S + +H R H +P++C + C + ++ L H + H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 57
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C + FSR + L H R HTG++P+ C C + FS S H RTH +P+ C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI-- 67
Query: 75 CTKRYTDPSSLRKHAKNH 92
C +++ ++H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
C + FSR ++L H R+HTGE+P++C + C + F+ S +R +H + H
Sbjct: 40 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHL 86
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
ERPY+C E C + FS S + +H R H +P++C + C + ++ L H + H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 58
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C + FSR +L H R HTG++P+ C C + FS S H RTH +P+ C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI-- 67
Query: 75 CTKRYTDPSSLRKHAKNH 92
C +++ ++H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
ERPY+C E C + FS S+D +H R H +P++C + C + ++ L H + H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 58
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
C + FSR ++L H R+HTGE+P++C + C + F+ S +R +H + H
Sbjct: 40 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHL 86
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C + FSR L H R HTG++P+ C C + FS S H RTH +P+ C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI-- 67
Query: 75 CTKRYTDPSSLRKHAKNH 92
C +++ ++H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
C + FSR ++L H R+HTGE+P++C + C + F+ S +R +H + H
Sbjct: 40 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHL 86
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
ERPY+C E C + FS S++ +H R H +P++C + C + ++ L H + H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 58
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C + FS NL H R HTG++P+ C C + FS S H RTH +P+ C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI-- 67
Query: 75 CTKRYTDPSSLRKHAKNH 92
C +++ ++H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
C + FSR ++L H R+HTGE+P++C + C + F+ S +R +H + H
Sbjct: 40 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHL 86
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
ERPY+C E C + FS+SS+ +H R H +P++C + C + ++ L H + H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTH 57
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C + FS+ NL H R HTG++P+ C C + FS + H RTH +P+ C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHTGEKPFACDI-- 67
Query: 75 CTKRYTDPSSLRKHAKNH 92
C +++ + +H K H
Sbjct: 68 CGRKFATLHTRTRHTKIH 85
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
ERPY+C E C + FS ++ H R H +P++C + C + ++ +SL H + H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQQASLNAHIRTH 57
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C + FS+ NL H R HTG++P+ C C + FS + +H RTH +P+ C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHTGEKPFACDI-- 67
Query: 75 CTKRYTDPSSLRKHAKNH 92
C +++ + +H K H
Sbjct: 68 CGRKFATLHTRDRHTKIH 85
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
ERPY+C E C + FS ++ H R H +P++C + C + ++ + L +H + H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQHTGLNQHIRTH 57
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
C + FSR ++L H R+HTGE+P++C + C + F+ S +R +H + H
Sbjct: 40 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHL 86
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C + FS+ +L H R HTG++P+ C C + FS S H RTH +P+ C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI-- 67
Query: 75 CTKRYTDPSSLRKHAKNH 92
C +++ ++H K H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
ERPY+C E C + FS S +H R H +P++C + C + ++ L H + H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 58
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
C K+FS +L H+R+HTGE+PY C + C KAF S H R H + P
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
R Y C + C K+FS+SSD +KH+RTH +PYKC C K + S L H + H
Sbjct: 17 RRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDE--CGKAFIQRSHLIGHHRVH 69
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQ 59
C + FSR ++L H R+HTGE+P++C C + F+ S +R +H+
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHR 51
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKH 88
+P+ C C + FS S H RTH +P+ C C +++ ++H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRH 50
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT--RPYKCMY 72
C K F + +L H+ SH+GE+PYSC C F + H R+H + +PY C
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYIC-- 68
Query: 73 KGCTKRYTDPSSLRKHAK 90
+ C K ++ P L H K
Sbjct: 69 QSCGKGFSRPDHLNGHIK 86
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGE--RPYSCTYEGCHKAFS 50
P C F R + + H RSH G +PY C + C K FS
Sbjct: 39 PVCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFS 76
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
RPY+C E C + FS S + +H R H +P++C + C + ++ L H + H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTH 72
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
C + FSR + L H R HTG++P+ C C + FS S H RTH
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 72
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKH-QRTH 62
F+C C +AF+R E+LK H RSHT E+PY C C++AF+ +H Q+ H
Sbjct: 2 SFVCEV---CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIH 54
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 43 EGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAK 90
E C +AF+ +H R+H + +PY C C + +T L +HA+
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQ 51
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 12 FPHCAKAFSRLENLKIHQR-SHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
FP C + FS + L H++ H ++ +SC C K+F+ +H + H DTR Y C
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Query: 71 MYKG 74
+ G
Sbjct: 72 EFSG 75
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQR-THFDTRPYKCMYKGCTKRYTDPSSLRKHAKN 91
+G C + GC + FSN H++ H + + C C K + L++H K
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 92 HN 93
H+
Sbjct: 63 HS 64
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C +++ L +L+ H H+ E+ Y C Y C K F + R KH+ H R Y+C+
Sbjct: 28 CKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERRYQCL--A 83
Query: 75 CTKRYTDPSSLRKHAKN-HNHDHLTPAKMRKLN 106
C K + + + H K+ H+ D +K+ +L+
Sbjct: 84 CGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLH 116
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSN 51
+C K F E H+ HTGER Y C C K+F N
Sbjct: 55 YCEKVFPLAEYRTKHEIHHTGERRYQCL--ACGKSFIN 90
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
C K+F+ H H G RPY C C K F H + H +PY+C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNI-- 70
Query: 75 CTKRYTDPSSLRKHA 89
C KR+ S +H
Sbjct: 71 CAKRFMWRDSFHRHV 85
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+G++ Y C C K+F++ S R +H H RPY C C K++ L H K H
Sbjct: 6 SGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 60
Query: 93 N 93
Sbjct: 61 T 61
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
F+CS+ C K F+ NL IHQ+ HTGERP
Sbjct: 13 FICSE---CGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 37.0 bits (84), Expect = 0.007, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+P++CT+ GC FS S + ++H+R+H +P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 30.4 bits (67), Expect = 0.69, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
F C+ +P C FSR + L H+RSH+G +P
Sbjct: 13 FACT-WPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 27.3 bits (59), Expect = 5.4, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
+P+ C + GC R++ L +H ++H+
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHS 38
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
F CS+ C KAF+ NL +HQR+HTGE+P
Sbjct: 13 FECSE---CQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+P+ C+ C KAF+ S+ HQRTH +P
Sbjct: 10 EKPFECSE--CQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
ERP+ C + C K + ++S ++H+R H RP C C K + D S + +H K H
Sbjct: 2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVH 55
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
C K + L H+R+H G RP SC C K F + S+ +H + H
Sbjct: 10 CGKTYRDASGLSRHRRAHLGYRPRSCPE--CGKCFRDQSEVNRHLKVH 55
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 15 CAKAFSRLENLKIHQRSHTGER 36
C KAF+R L IHQ+SHTGER
Sbjct: 18 CGKAFTRKSGLHIHQQSHTGER 39
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
C +F NL H+ HTGE+PY C C F+ ++ H R H +P
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
++PY C + C +F + A H+ H +PY+C C ++ P++L+ H + H+
Sbjct: 15 DKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHS 69
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKH 58
F CS C + F R L++H SHTGE PY C+ C + F D H
Sbjct: 67 FTCSV---CQETFRRRMELRLHMVSHTGEMPYKCS--SCSQQFMQKKDLQSH 113
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 31/105 (29%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSC-----------------------------TYE 43
P C K F LK+H R HTGE+P+ C T
Sbjct: 11 PTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS 70
Query: 44 GCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKH 88
C + F + H +H PYKC C++++ L+ H
Sbjct: 71 VCQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSH 113
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
F C++ C KAF+R L +HQ+ HTGE+P
Sbjct: 13 FECTE---CGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
+ CS+ C KAF+R L +HQR HTGE+P
Sbjct: 13 YECSE---CGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
ERPY CT C KAF++ S+ KHQ+ H +P
Sbjct: 10 ERPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAF+ NL HQ+ HTGE+P
Sbjct: 18 CGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+RPYSC + GC KAF + D +H+++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C Y C KAF S++ +HQR H +P
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERP 37
+C KAF L HQR HTGE+P
Sbjct: 17 YCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAF++ NL HQR HTGE+P
Sbjct: 18 CGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C KAF+ ++ +HQR H +P
Sbjct: 10 EKPYRCGE--CGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C KAFS +S A+HQR H +P
Sbjct: 10 EKPYKCNE--CGKAFSQTSKLARHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAFS+ L HQR HTGE+P
Sbjct: 18 CGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAFS+ L HQR HTGE+P
Sbjct: 18 CGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
+PY C C KAFS +S A+HQR H +P
Sbjct: 11 KPYQCNE--CGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.089, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERP 37
CSQ CAK FS L +HQRSHTG +P
Sbjct: 15 CSQ---CAKTFSLKSQLIVHQRSHTGVKP 40
Score = 26.9 bits (58), Expect = 6.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
+PY C+ C K FS S HQR+H +P
Sbjct: 11 KPYGCSQ--CAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K FS+ +L+ HQR HTGE+P
Sbjct: 18 CGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
F+C+ + +C K F+R + L+ H+R+HTGE+
Sbjct: 3 FMCT-WSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
RP+ CT+ C K F+ S + +H+RTH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
RP+ C + C KR+T L++H + H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
+GE+P+ C+ C KAFS+ S HQ+TH + +P
Sbjct: 6 SGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKP 38
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAFS L +HQ++H E+P
Sbjct: 16 CEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAFS+ +L HQR HTGE+P
Sbjct: 18 CGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C KAFS ++ +HQR H +P
Sbjct: 10 EKPYECKE--CGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAFSR L HQR+H GE+P
Sbjct: 18 CGKAFSRKYQLISHQRTHAGEKP 40
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E PY C C KAFS HQRTH +P
Sbjct: 10 ENPYECHE--CGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K FS+ L HQR+HTGE+P
Sbjct: 18 CGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C K FS S + HQRTH +P
Sbjct: 10 EKPYGCNE--CGKTFSQKSILSAHQRTHTGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCTY 42
+C K F L IH R+HTGE+PY C +
Sbjct: 9 YCGKFFRSNYYLNIHLRTHTGEKPYKCEF 37
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 34 GERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
G C+Y C K F ++ H RTH +PYKC + C +SLR H + H+
Sbjct: 1 GSSSRECSY--CGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHLERHH 56
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
F C++ C K F++ +L +HQR HTGE+P
Sbjct: 13 FKCNE---CKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 15 CAKAFSRLENLKIHQRSHTGE 35
C KAF+ NL +HQR+HTGE
Sbjct: 18 CQKAFNTKSNLMVHQRTHTGE 38
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
E+PY C C KAF+ S+ HQRTH
Sbjct: 10 EKPYECNE--CQKAFNTKSNLMVHQRTH 35
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 4 IFDFLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
+ ++C++ C KAFS +L HQ HTGE+P
Sbjct: 10 VKPYMCNE---CGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C+KAF++ +L HQ++HTGE+P
Sbjct: 18 CSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C KAF+ + A+HQ+TH +P
Sbjct: 10 EKPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
+ CS+ C KAFS L IH R+H+GE+P
Sbjct: 13 YGCSE---CGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C+ C KAFS+ S H RTH +P
Sbjct: 10 EKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 2 TTIFDFLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
+ + + CS+ C KAF L IH R+HTGE+P
Sbjct: 6 SGVKPYGCSE---CGKAFRSKSYLIIHMRTHTGEKP 38
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
+G +PY C+ C KAF + S H RTH +P
Sbjct: 6 SGVKPYGCSE--CGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
TG +P+ CT+ C ++FS S A H++ H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRHM 33
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 2 TTIFDFLCSQFPHCAKAFSRLENLKIHQRSH 32
T I F C+ +P C ++FSR ++L +H++ H
Sbjct: 3 TGIKPFQCT-WPDCDRSFSRSDHLALHRKRH 32
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
F C++ C K+FS L HQR HTGE+P
Sbjct: 13 FECAE---CGKSFSISSQLATHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+P+ C C K+FS SS A HQR H +P
Sbjct: 10 EKPFECAE--CGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K+F++ L +HQ+ HTGE+P
Sbjct: 18 CGKSFTKKSQLHVHQQIHTGEKP 40
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C+ C K+F+ S HQ+ H +P
Sbjct: 10 EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K FSR L HQ+ HTGE+P
Sbjct: 18 CGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K FSR L +H + HTGE+P
Sbjct: 18 CGKGFSRRSALNVHHKLHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRT 61
++C + C + LK H R+HT RPY CTY C+ +F + KH ++
Sbjct: 1 KYICEE---CGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKS 51
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 43 EGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHD 95
E C S KH RTH D RPY C Y C + +L KH K+ H
Sbjct: 5 EECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAHS 55
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAF+ NL HQ+ HTGE+P
Sbjct: 18 CGKAFTDRSNLFTHQKIHTGEKP 40
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C KAF++ S+ HQ+ H +P
Sbjct: 10 EKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K ++ NL +HQ+ HTGERP
Sbjct: 18 CGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 15 CAKAFSRLENLKIHQRSHTGER 36
C K+F+ L+IHQ+ HTGER
Sbjct: 18 CGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+GE+PY CT C KAF S HQRTH
Sbjct: 6 SGEKPYECTD--CGKAFGLKSQLIIHQRTH 33
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 15 CAKAFSRLENLKIHQRSHTGE 35
C KAF L IHQR+HTGE
Sbjct: 16 CGKAFGLKSQLIIHQRTHTGE 36
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 30 RSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR--PYKCMYKGCTKRYTDPSSLRK 87
R+HTGE+PY+C++ C K F H + + D P + C K +T +++ +
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 88 HAKN 91
HA N
Sbjct: 66 HADN 69
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.41, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAFS ++L +HQR H+G++P
Sbjct: 18 CGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C+ C KAFS+ + HQR H +P
Sbjct: 10 EKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAF +L H+RSHTGE+P
Sbjct: 18 CGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 11 QFPHCAKAFSRLENLKIHQRSHTGERPYS 39
Q C K+FS+ +L +H+R HTG P S
Sbjct: 12 QCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
+GE+PY C C K+FS A H+R H + P
Sbjct: 6 SGEKPYQCKE--CGKSFSQRGSLAVHERLHTGSGP 38
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 58 HQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPA 100
H+R H RP+KC Y C+ PS+L KH K + D P+
Sbjct: 28 HERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 25 LKIHQRSHTGERPYSCTY 42
L+IH+R H +RP+ C Y
Sbjct: 25 LRIHERIHCTDRPFKCNY 42
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAF +L IHQ +H+GE+P
Sbjct: 18 CGKAFRARSSLAIHQATHSGEKP 40
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C KAF S A HQ TH +P
Sbjct: 10 EKPYKCNE--CGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K+F + L +HQR HTGE P
Sbjct: 18 CGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C KAF ++S +HQR H RP
Sbjct: 10 EKPYKCME--CGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAF + HQR HTG+RP
Sbjct: 18 CGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 14 HCAKAFSRLENLKIHQRSHTGER 36
HC K+F NL HQR HTGE+
Sbjct: 17 HCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
+ CS+ C KAF R L +HQR+H+GE
Sbjct: 13 YECSE---CGKAFIRNSQLIVHQRTHSGE 38
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 31 SHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
S T E+PY C+ C KAF +S HQRTH
Sbjct: 6 SGTREKPYECSE--CGKAFIRNSQLIVHQRTH 35
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C K F+ +S A HQR H +P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLANHQRIHTGVKP 40
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K F++ +L HQR HTG +P
Sbjct: 18 CGKVFTQNSHLANHQRIHTGVKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 15 CAKAFSRLENLKIHQRSHTGER 36
C + FSR ++LK H R+HTGE+
Sbjct: 8 CQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY+C E C KAF + S +HQR H +P
Sbjct: 10 EKPYNC--EECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAF L+ HQR HTGE+P
Sbjct: 18 CGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
F+C C +AF+R E+LK H RSHT E+
Sbjct: 2 SFVCEV---CTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K+FS L +HQR HTGE P
Sbjct: 18 CGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
+ CS+ C KAF+R + L HQR+H GE
Sbjct: 11 YECSE---CGKAFNRKDQLISHQRTHAGE 36
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+GE PY C+ C KAF+ HQRTH
Sbjct: 6 SGENPYECSE--CGKAFNRKDQLISHQRTH 33
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 14 HCAKAFSRLENLKIHQRSHTGE 35
+C KAFS L IHQR HTGE
Sbjct: 15 NCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
+ CS+ C KAF + L +HQR H GE+P
Sbjct: 13 YECSE---CGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C KAFS+ + +HQR H +P
Sbjct: 10 EKPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAFS +L HQR H+GE+P
Sbjct: 18 CRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAF NL HQ HTGE+P
Sbjct: 18 CGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C KAF+ S+ KHQ+ H +P
Sbjct: 10 EKPYICAE--CGKAFTIRSNLIKHQKIHTKQKP 40
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
++C++ C KAF+ NL HQ+ HT ++P
Sbjct: 13 YICAE---CGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
F+C C +AF+R E LK H RSHT E+
Sbjct: 2 SFVCEV---CTRAFARQEALKRHYRSHTNEK 29
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K+F +L +HQR HTGE+P
Sbjct: 18 CHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C CHK+F S HQR H +P
Sbjct: 10 EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYS 39
C KAFS+ +L +H R HTG P S
Sbjct: 16 QCGKAFSQKGSLIVHIRVHTGSGPSS 41
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 15 CAKAFSRLENLKIHQRSHTGER 36
C K ++R NL +HQR H GE+
Sbjct: 18 CGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K FS L IHQR HTGE P
Sbjct: 16 CRKTFSFHSQLVIHQRIHTGENP 38
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
F+C C +AF+R E LK H RSHT E+
Sbjct: 2 SFVCEV---CTRAFARQEYLKRHYRSHTNEK 29
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+GE+PY C + C KAF+ SS + H+R H
Sbjct: 6 SGEKPYVC--QECGKAFTQSSCLSIHRRVH 33
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 15 CAKAFSRLENLKIHQRSHTGE 35
C KAF++ L IH+R HTGE
Sbjct: 16 CGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
F C + C K F++ +L HQR HTGE+P
Sbjct: 13 FQCEE---CGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K+FSR L H+R H+GE+P
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKP 40
>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1SRS|B Chain B, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1HBX|A Chain A, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|B Chain B, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|D Chain D, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|E Chain E, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 92
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 130 FTVFSCGEPNLLMESYELQTVTHDHMLEYIPYDTIHATGNISRNLQ 175
+T FS + ++ ++YEL T+T +L + +T H +R LQ
Sbjct: 27 YTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQ 72
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C KAFS L H+R HTGE+P
Sbjct: 18 CGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
F C + C K F++ L HQR HTGE+P
Sbjct: 13 FKCEE---CGKRFTQNSQLHSHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+P+ C E C K F+ +S HQR H +P
Sbjct: 10 EKPFKC--EECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERP 37
C KAFS +L HQ HTG++P
Sbjct: 17 QCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C KAFS S HQ H +P
Sbjct: 10 EKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 4 IFDFLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
+ + CSQ C K+FS L +HQR HT E+P
Sbjct: 10 VNPYKCSQ---CEKSFSGKLRLLVHQRMHTREKP 40
>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
pdb|1K6O|C Chain C, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 103
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 130 FTVFSCGEPNLLMESYELQTVTHDHMLEYIPYDTIHATGNISRNLQ 175
+T FS + ++ ++YEL T+T +L + +T H +R LQ
Sbjct: 26 YTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQ 71
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C K F+ +S A+H+R H +P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
+ CS+ C KAF R +L H+R HTG RP
Sbjct: 13 YKCSE---CGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
F C + C K++++ +L HQR HTGE+P
Sbjct: 13 FKCGE---CGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYS 39
C K F + +L H+ SH+GE+PYS
Sbjct: 18 CGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 15 CAKAFSRLENLKIH-QRSHTGERPYSC 40
C K FSR ++L H ++ HT ERP+ C
Sbjct: 18 CGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
+GE+PYSC C KAF+ S H+ H +P
Sbjct: 6 SGEKPYSCNE--CGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 15 CAKAFSRLENLKIHQRSHTGER 36
C K + R +L HQR HTGE+
Sbjct: 18 CGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
E+P CT C KAF S HQRTH D +
Sbjct: 10 EKPCKCTE--CGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 15 CAKAFSRLENLKIHQRSHTGER 36
C K F + L+IHQR H GE+
Sbjct: 18 CGKNFCYISALRIHQRVHMGEK 39
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C + F+ +L HQR HTGE+P
Sbjct: 18 CGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 15 CAKAFSRLENLKIHQRSHTGER 36
C K FS L +HQR HTGE+
Sbjct: 16 CGKDFSSKSYLIVHQRIHTGEK 37
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+GE+PY C C K FS+ S HQR H
Sbjct: 6 SGEKPYGCNE--CGKDFSSKSYLIVHQRIH 33
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
+G++P C C K F SS +KHQR H +P
Sbjct: 6 SGKKPLVCNE--CGKTFRQSSCLSKHQRIHSGEKP 38
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K F + L HQR H+GE+P
Sbjct: 16 CGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+GE+PYSC C + FS+++ +HQ+ H
Sbjct: 6 SGEKPYSCAE--CKETFSDNNRLVQHQKMH 33
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K+F + +L HQR HTGE+P
Sbjct: 18 CGKSFIQSAHLIQHQRIHTGEKP 40
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
ERP+ C C K+F S+ +HQR H +P
Sbjct: 10 ERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
++C++ C K+F + +L H+R HTGE+P
Sbjct: 13 YICNE---CGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 27.7 bits (60), Expect = 4.0, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
++C++ C KAF L IH+R HTGE
Sbjct: 11 YVCNE---CGKAFGLKSQLIIHERIHTGE 36
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT 65
+G+RP+ C C AF+ ++ A+H + H DT
Sbjct: 3 SGKRPFVCRI--CLSAFTTKANCARHLKVHTDT 33
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
++C++ C KAF L IH R+HTGE
Sbjct: 13 YVCNE---CGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY+C + C K+F +S KHQR H +P
Sbjct: 10 EKPYNC--KECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGER 36
C KAF NL HQ HTGE+
Sbjct: 18 CGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K F++ +L H R HTGE+P
Sbjct: 18 CGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C FS+ +L++HQ H GE+P
Sbjct: 18 CDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYS 39
C K+F + +L +H+R HTG P S
Sbjct: 16 CGKSFRQKGSLTLHERIHTGSGPSS 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGER 36
P C+ A + NL +H R HTGE+
Sbjct: 13 PQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 15 CAKAFSRLENLKIHQRSHTGE 35
C K FSR + L HQ++H+G+
Sbjct: 18 CGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K F R +L HQ HTGE+P
Sbjct: 18 CGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRP 67
E+PY C C K F ++S ++HQR H +P
Sbjct: 10 EKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKP 40
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K F L HQR HTGE+P
Sbjct: 18 CGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYS 39
+LC Q C K+F++ +L +HQRS + P S
Sbjct: 12 YLCGQ---CGKSFTQRGSLAVHQRSCSQSGPSS 41
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 26.9 bits (58), Expect = 6.6, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 15 CAKAFSRLENLKIHQRSHTGER 36
C KAF++ +L H R HTGE+
Sbjct: 8 CGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
++C++ C KAF R + H+R HTGE
Sbjct: 11 YVCTE---CGKAFIRKSHFITHERIHTGE 36
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 26.9 bits (58), Expect = 7.8, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+PY C++ C +++ DP +L++H + H
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIH 26
>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2,
Nmr, 20 Structures
Length = 38
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
++P+ CT GC + F+N A H+ H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
Length = 47
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 68 YKCMYKGCTKRYTDPSSLRKHAKNHNHD 95
++C++ GCTK + ++R H + H D
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLED 46
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 15 CAKAFSRLENLKIHQRSHTGERP 37
C K F HQRSH+GE+P
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,917,196
Number of Sequences: 62578
Number of extensions: 215581
Number of successful extensions: 836
Number of sequences better than 100.0: 168
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 366
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)