Query psy9954
Match_columns 196
No_of_seqs 275 out of 1947
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 23:55:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462|consensus 99.9 9.4E-28 2E-32 178.2 2.0 129 12-150 133-264 (279)
2 KOG2462|consensus 99.9 8E-27 1.7E-31 173.3 1.3 103 11-119 163-265 (279)
3 KOG1074|consensus 99.8 9E-22 2E-26 164.3 5.2 86 67-154 605-693 (958)
4 KOG3576|consensus 99.7 2E-19 4.3E-24 128.2 -0.8 113 6-125 117-240 (267)
5 KOG1074|consensus 99.7 3.3E-18 7.2E-23 143.3 3.4 51 11-63 607-657 (958)
6 KOG3608|consensus 99.7 1.3E-17 2.8E-22 127.9 1.2 137 6-152 177-315 (467)
7 KOG3576|consensus 99.6 1.1E-17 2.4E-22 119.3 -1.6 117 35-155 115-238 (267)
8 KOG3623|consensus 99.6 1.4E-16 3.1E-21 131.9 3.8 105 11-119 212-331 (1007)
9 KOG3608|consensus 99.6 1.8E-16 4E-21 121.7 0.9 111 9-122 263-377 (467)
10 KOG3623|consensus 99.6 1E-15 2.3E-20 126.9 1.9 79 5-90 893-971 (1007)
11 PLN03086 PRLI-interacting fact 99.2 1.3E-11 2.9E-16 102.5 5.4 99 12-121 456-564 (567)
12 PHA00733 hypothetical protein 99.1 1.6E-11 3.5E-16 84.1 1.1 83 34-122 37-124 (128)
13 PHA00733 hypothetical protein 99.0 2.4E-10 5.1E-15 78.3 3.7 82 5-95 39-125 (128)
14 PHA02768 hypothetical protein; 99.0 4.6E-10 9.9E-15 64.2 2.6 45 67-115 5-49 (55)
15 PHA02768 hypothetical protein; 98.9 4.6E-10 1E-14 64.2 2.1 44 6-56 5-48 (55)
16 PLN03086 PRLI-interacting fact 98.8 1.4E-09 3E-14 90.7 2.8 94 36-143 452-555 (567)
17 KOG3993|consensus 98.7 2.8E-09 6E-14 84.3 -0.5 84 3-93 264-380 (500)
18 PF13465 zf-H2C2_2: Zinc-finge 98.7 2.1E-08 4.6E-13 49.0 2.7 24 25-50 2-25 (26)
19 PF13465 zf-H2C2_2: Zinc-finge 98.6 2.7E-08 5.9E-13 48.6 2.3 25 54-80 1-25 (26)
20 PHA00616 hypothetical protein 98.3 2.9E-07 6.3E-12 50.2 2.1 31 12-42 4-34 (44)
21 COG5189 SFP1 Putative transcri 98.3 4.7E-07 1E-11 69.5 2.5 54 65-118 347-419 (423)
22 PHA00616 hypothetical protein 98.3 3.5E-07 7.5E-12 49.9 1.3 27 45-71 7-33 (44)
23 PHA00732 hypothetical protein 98.2 9.6E-07 2.1E-11 55.2 3.0 45 67-119 1-46 (79)
24 KOG3993|consensus 98.2 2.4E-07 5.2E-12 73.6 -0.5 83 38-124 268-383 (500)
25 COG5189 SFP1 Putative transcri 98.1 6.7E-07 1.5E-11 68.7 1.0 55 34-90 346-419 (423)
26 PHA00732 hypothetical protein 98.0 4.1E-06 9E-11 52.3 2.2 47 6-63 1-48 (79)
27 PF12756 zf-C2H2_2: C2H2 type 97.9 9.7E-06 2.1E-10 52.9 3.0 74 11-93 1-74 (100)
28 PF05605 zf-Di19: Drought indu 97.9 2.5E-05 5.5E-10 45.2 4.1 46 12-62 5-52 (54)
29 PF00096 zf-C2H2: Zinc finger, 97.8 1.5E-05 3.2E-10 37.6 1.7 22 68-91 1-22 (23)
30 PF05605 zf-Di19: Drought indu 97.8 1E-05 2.3E-10 46.8 1.2 48 38-92 3-52 (54)
31 PF00096 zf-C2H2: Zinc finger, 97.7 2E-05 4.4E-10 37.1 1.8 20 13-32 4-23 (23)
32 PF13894 zf-C2H2_4: C2H2-type 97.5 8.4E-05 1.8E-09 35.0 2.3 22 12-33 3-24 (24)
33 PF13894 zf-C2H2_4: C2H2-type 97.5 6.4E-05 1.4E-09 35.4 1.8 23 68-92 1-23 (24)
34 PF13912 zf-C2H2_6: C2H2-type 97.5 8.8E-05 1.9E-09 36.3 2.1 25 67-93 1-25 (27)
35 PF13912 zf-C2H2_6: C2H2-type 97.3 0.00015 3.3E-09 35.4 1.5 24 7-33 2-25 (27)
36 smart00355 ZnF_C2H2 zinc finge 97.1 0.00074 1.6E-08 32.1 2.7 22 12-33 3-24 (26)
37 PF09237 GAGA: GAGA factor; I 97.0 0.00082 1.8E-08 37.6 2.5 26 12-37 27-52 (54)
38 PF12756 zf-C2H2_2: C2H2 type 96.9 6.5E-05 1.4E-09 49.0 -2.6 74 39-121 1-74 (100)
39 smart00355 ZnF_C2H2 zinc finge 96.5 0.0018 3.9E-08 30.7 1.6 23 68-92 1-23 (26)
40 KOG1146|consensus 96.5 0.0076 1.6E-07 55.1 6.5 25 97-121 589-613 (1406)
41 PF09237 GAGA: GAGA factor; I 96.4 0.0038 8.2E-08 35.0 2.5 30 65-96 22-51 (54)
42 PF13909 zf-H2C2_5: C2H2-type 96.3 0.0022 4.8E-08 30.3 1.2 23 68-93 1-23 (24)
43 PF13913 zf-C2HC_2: zinc-finge 96.1 0.0059 1.3E-07 29.2 2.1 20 11-31 4-23 (25)
44 PF12874 zf-met: Zinc-finger o 96.1 0.0041 8.8E-08 29.6 1.6 22 68-91 1-22 (25)
45 COG5048 FOG: Zn-finger [Genera 96.0 0.0041 9E-08 50.8 2.3 115 6-123 289-414 (467)
46 KOG1146|consensus 95.9 0.0032 7E-08 57.4 1.4 111 3-120 462-641 (1406)
47 PF12874 zf-met: Zinc-finger o 95.9 0.0051 1.1E-07 29.2 1.3 19 13-31 4-22 (25)
48 PRK04860 hypothetical protein; 95.7 0.0068 1.5E-07 43.2 1.9 40 67-112 119-158 (160)
49 PF12171 zf-C2H2_jaz: Zinc-fin 95.5 0.003 6.6E-08 30.8 -0.4 22 7-31 2-23 (27)
50 PRK04860 hypothetical protein; 95.1 0.019 4E-07 41.0 2.7 38 37-82 119-156 (160)
51 PF13909 zf-H2C2_5: C2H2-type 94.9 0.022 4.9E-07 26.7 1.8 18 14-32 5-22 (24)
52 PF12171 zf-C2H2_jaz: Zinc-fin 94.9 0.0097 2.1E-07 28.9 0.5 22 68-91 2-23 (27)
53 KOG2482|consensus 94.1 0.11 2.4E-06 41.1 4.8 105 12-121 198-358 (423)
54 KOG2231|consensus 94.1 0.052 1.1E-06 46.9 3.3 96 17-122 122-237 (669)
55 KOG2893|consensus 93.9 0.033 7.1E-07 41.8 1.6 51 66-123 10-60 (341)
56 COG5048 FOG: Zn-finger [Genera 92.8 0.049 1.1E-06 44.5 1.2 64 37-102 289-356 (467)
57 KOG2893|consensus 92.6 0.048 1E-06 40.9 0.7 41 12-58 13-53 (341)
58 COG5236 Uncharacterized conser 92.4 0.055 1.2E-06 42.8 0.9 106 5-121 150-275 (493)
59 KOG4124|consensus 92.4 0.052 1.1E-06 43.0 0.7 54 65-118 347-419 (442)
60 KOG2231|consensus 92.4 0.39 8.4E-06 41.8 6.0 67 21-93 161-236 (669)
61 KOG2785|consensus 92.3 0.26 5.7E-06 39.6 4.5 22 37-60 68-89 (390)
62 KOG4173|consensus 91.8 0.028 6.1E-07 41.1 -1.2 80 37-121 79-170 (253)
63 smart00451 ZnF_U1 U1-like zinc 91.8 0.18 3.9E-06 25.8 2.2 23 67-91 3-25 (35)
64 smart00451 ZnF_U1 U1-like zinc 91.0 0.19 4E-06 25.7 1.8 23 6-31 3-25 (35)
65 COG5236 Uncharacterized conser 89.9 0.047 1E-06 43.2 -1.6 81 38-122 152-245 (493)
66 KOG4173|consensus 88.8 0.19 4E-06 37.0 0.8 81 6-92 79-170 (253)
67 smart00734 ZnF_Rad18 Rad18-lik 86.9 0.7 1.5E-05 22.2 2.0 19 11-30 3-21 (26)
68 COG4049 Uncharacterized protei 84.0 0.41 8.9E-06 27.4 0.4 26 64-91 14-39 (65)
69 PF12013 DUF3505: Protein of u 83.7 3.1 6.6E-05 27.5 4.7 25 68-94 81-109 (109)
70 cd00350 rubredoxin_like Rubred 82.1 0.99 2.1E-05 22.9 1.4 7 66-72 16-22 (33)
71 PF12013 DUF3505: Protein of u 80.5 3.4 7.4E-05 27.3 4.0 27 38-64 81-109 (109)
72 KOG4377|consensus 80.4 2.4 5.2E-05 34.7 3.6 71 37-110 271-360 (480)
73 smart00614 ZnF_BED BED zinc fi 79.9 1.4 3.1E-05 24.7 1.7 22 12-33 21-48 (50)
74 PF07800 DUF1644: Protein of u 78.9 8.7 0.00019 27.3 5.6 16 17-32 34-49 (162)
75 KOG2186|consensus 77.3 2.5 5.4E-05 32.3 2.7 45 12-61 6-50 (276)
76 TIGR00622 ssl1 transcription f 75.2 4.1 8.9E-05 27.2 3.0 16 12-27 18-33 (112)
77 KOG4377|consensus 73.3 2 4.3E-05 35.1 1.4 81 6-90 271-370 (480)
78 KOG2186|consensus 72.5 3.1 6.7E-05 31.8 2.2 47 37-90 3-49 (276)
79 COG4049 Uncharacterized protei 71.4 1.9 4.1E-05 24.7 0.7 28 32-61 12-39 (65)
80 PF05443 ROS_MUCR: ROS/MUCR tr 69.3 3.2 6.9E-05 28.6 1.5 20 14-36 77-96 (132)
81 cd00730 rubredoxin Rubredoxin; 69.2 4.2 9.1E-05 22.9 1.8 13 98-110 2-14 (50)
82 PF10571 UPF0547: Uncharacteri 68.0 2.6 5.5E-05 20.2 0.6 13 8-20 13-25 (26)
83 TIGR00373 conserved hypothetic 68.0 6.8 0.00015 27.9 3.1 33 64-107 106-138 (158)
84 KOG2785|consensus 67.7 7.7 0.00017 31.5 3.6 72 11-91 168-242 (390)
85 PF09986 DUF2225: Uncharacteri 66.7 1.2 2.6E-05 33.4 -1.0 13 98-110 49-61 (214)
86 PF06524 NOA36: NOA36 protein; 66.5 7.4 0.00016 30.0 3.1 23 96-118 208-230 (314)
87 KOG2482|consensus 65.7 19 0.00041 29.0 5.3 86 67-154 195-359 (423)
88 KOG4167|consensus 63.6 1.9 4.2E-05 37.8 -0.5 18 15-32 798-815 (907)
89 PRK00464 nrdR transcriptional 62.8 1.5 3.2E-05 31.1 -1.1 14 98-111 29-42 (154)
90 TIGR00622 ssl1 transcription f 62.1 9.6 0.00021 25.4 2.7 79 36-120 14-104 (112)
91 PF02892 zf-BED: BED zinc fing 60.7 12 0.00025 20.1 2.6 22 66-89 15-40 (45)
92 COG2888 Predicted Zn-ribbon RN 59.0 8.6 0.00019 22.4 1.8 10 96-105 49-58 (61)
93 PF13878 zf-C2H2_3: zinc-finge 58.6 13 0.00028 19.9 2.4 23 11-33 15-39 (41)
94 PF15269 zf-C2H2_7: Zinc-finge 58.6 9.3 0.0002 20.8 1.8 22 68-91 21-42 (54)
95 PRK06266 transcription initiat 58.6 12 0.00026 27.2 3.0 33 65-108 115-147 (178)
96 PF13719 zinc_ribbon_5: zinc-r 56.9 11 0.00025 19.5 2.0 6 45-50 8-13 (37)
97 smart00531 TFIIE Transcription 56.7 18 0.00039 25.3 3.5 38 64-107 96-133 (147)
98 PF05290 Baculo_IE-1: Baculovi 55.1 6.5 0.00014 27.0 1.0 59 33-112 76-136 (140)
99 PF09986 DUF2225: Uncharacteri 54.7 3.4 7.4E-05 31.0 -0.4 13 68-82 49-61 (214)
100 PF04780 DUF629: Protein of un 54.7 8.9 0.00019 32.3 1.9 31 4-34 52-83 (466)
101 PF08274 PhnA_Zn_Ribbon: PhnA 54.4 6.7 0.00014 19.5 0.7 10 11-20 4-13 (30)
102 PF09538 FYDLN_acid: Protein o 53.7 9.5 0.00021 25.3 1.6 30 68-110 10-39 (108)
103 KOG4124|consensus 53.5 1.9 4E-05 34.5 -2.0 53 35-89 347-418 (442)
104 PF02176 zf-TRAF: TRAF-type zi 53.1 10 0.00023 21.7 1.6 36 36-72 8-43 (60)
105 PF13717 zinc_ribbon_4: zinc-r 52.6 16 0.00035 18.8 2.1 6 45-50 8-13 (36)
106 COG4957 Predicted transcriptio 52.1 8.2 0.00018 26.5 1.1 23 8-36 78-100 (148)
107 TIGR00373 conserved hypothetic 50.9 19 0.0004 25.7 2.9 37 31-80 103-139 (158)
108 PRK14890 putative Zn-ribbon RN 50.3 13 0.00028 21.7 1.6 8 97-104 48-55 (59)
109 KOG4167|consensus 49.9 3.3 7.1E-05 36.5 -1.3 26 67-94 792-817 (907)
110 PRK09678 DNA-binding transcrip 49.6 2.7 5.8E-05 25.7 -1.4 20 95-114 25-46 (72)
111 PF04959 ARS2: Arsenite-resist 43.6 16 0.00034 27.5 1.6 31 64-96 74-104 (214)
112 PRK06266 transcription initiat 43.3 22 0.00048 25.9 2.3 36 33-81 113-148 (178)
113 smart00531 TFIIE Transcription 42.8 61 0.0013 22.6 4.4 40 33-80 95-134 (147)
114 PF13453 zf-TFIIB: Transcripti 42.6 9.5 0.00021 20.2 0.3 19 36-56 18-36 (41)
115 PHA00626 hypothetical protein 40.4 13 0.00029 21.4 0.6 15 95-109 21-35 (59)
116 PF04606 Ogr_Delta: Ogr/Delta- 39.6 4.4 9.5E-05 22.4 -1.4 16 37-52 25-40 (47)
117 PF04423 Rad50_zn_hook: Rad50 39.5 11 0.00025 21.3 0.3 12 12-23 23-34 (54)
118 KOG2593|consensus 39.1 25 0.00055 29.2 2.3 39 64-107 125-163 (436)
119 KOG0717|consensus 38.2 17 0.00037 30.5 1.2 20 12-31 295-314 (508)
120 COG1592 Rubrerythrin [Energy p 37.2 21 0.00046 25.7 1.4 11 64-76 146-156 (166)
121 TIGR02300 FYDLN_acid conserved 35.7 33 0.00072 23.4 2.0 30 68-110 10-39 (129)
122 PF10013 DUF2256: Uncharacteri 35.1 16 0.00036 19.6 0.4 14 12-25 11-24 (42)
123 PF12907 zf-met2: Zinc-binding 33.2 31 0.00066 18.4 1.3 9 22-30 17-25 (40)
124 PF04959 ARS2: Arsenite-resist 33.0 14 0.00029 27.8 -0.1 29 35-65 75-103 (214)
125 COG1996 RPC10 DNA-directed RNA 32.9 27 0.00058 19.6 1.1 10 68-79 7-16 (49)
126 KOG3002|consensus 31.4 84 0.0018 25.0 4.0 76 11-91 82-161 (299)
127 PF10276 zf-CHCC: Zinc-finger 31.2 15 0.00032 19.6 -0.1 8 12-19 32-39 (40)
128 COG4391 Uncharacterized protei 30.9 18 0.0004 21.2 0.2 10 11-20 50-59 (62)
129 PF11789 zf-Nse: Zinc-finger o 30.3 47 0.001 19.1 1.9 6 45-50 30-35 (57)
130 KOG2593|consensus 29.7 85 0.0018 26.2 3.8 39 33-78 124-162 (436)
131 KOG2071|consensus 29.6 30 0.00065 30.0 1.3 22 12-33 421-442 (579)
132 KOG1701|consensus 29.5 11 0.00024 31.1 -1.1 73 67-143 360-438 (468)
133 PF00301 Rubredoxin: Rubredoxi 29.1 42 0.00091 18.6 1.5 12 98-109 2-13 (47)
134 COG1773 Rubredoxin [Energy pro 29.1 20 0.00042 20.7 0.1 15 97-111 3-17 (55)
135 PF01363 FYVE: FYVE zinc finge 28.3 32 0.00069 20.3 1.0 9 12-20 12-20 (69)
136 PRK04023 DNA polymerase II lar 27.0 65 0.0014 30.1 3.0 11 98-108 664-674 (1121)
137 PF07282 OrfB_Zn_ribbon: Putat 26.0 48 0.001 19.6 1.5 14 65-80 44-57 (69)
138 KOG3408|consensus 25.7 46 0.00099 22.6 1.4 26 65-92 55-80 (129)
139 TIGR03829 YokU_near_AblA uncha 25.6 50 0.0011 21.1 1.5 19 8-26 34-52 (89)
140 PF07754 DUF1610: Domain of un 25.4 35 0.00077 16.0 0.6 6 67-72 16-21 (24)
141 PF09723 Zn-ribbon_8: Zinc rib 24.9 30 0.00064 18.5 0.3 12 6-20 5-16 (42)
142 PRK00432 30S ribosomal protein 24.7 37 0.0008 19.0 0.7 11 37-49 37-47 (50)
143 PF07295 DUF1451: Protein of u 24.6 49 0.0011 23.3 1.5 16 95-110 128-143 (146)
144 COG4888 Uncharacterized Zn rib 24.4 14 0.00031 24.0 -1.1 10 98-107 47-56 (104)
145 COG4530 Uncharacterized protei 24.4 39 0.00085 22.4 0.9 12 66-79 25-36 (129)
146 KOG4727|consensus 23.9 16 0.00034 26.3 -1.1 22 97-118 75-96 (193)
147 KOG3408|consensus 23.9 53 0.0011 22.3 1.4 18 14-31 62-79 (129)
148 KOG1842|consensus 23.3 52 0.0011 27.6 1.5 23 12-34 18-41 (505)
149 PF13824 zf-Mss51: Zinc-finger 22.5 58 0.0013 18.7 1.2 15 33-49 10-24 (55)
150 KOG2932|consensus 22.4 94 0.002 24.9 2.7 29 94-122 141-172 (389)
151 PF12230 PRP21_like_P: Pre-mRN 22.2 29 0.00064 26.2 0.0 30 36-68 167-196 (229)
152 PF09963 DUF2197: Uncharacteri 21.2 57 0.0012 18.9 1.0 8 96-103 30-37 (56)
153 smart00154 ZnF_AN1 AN1-like Zi 21.2 54 0.0012 17.2 0.9 13 67-81 12-24 (39)
154 cd00065 FYVE FYVE domain; Zinc 21.1 60 0.0013 18.2 1.2 9 12-20 5-13 (57)
155 smart00064 FYVE Protein presen 21.0 58 0.0013 19.1 1.1 9 12-20 13-21 (68)
156 PF14447 Prok-RING_4: Prokaryo 20.9 43 0.00094 19.2 0.5 11 11-21 41-51 (55)
157 KOG0717|consensus 20.7 71 0.0015 27.0 1.9 22 68-91 293-314 (508)
158 PF04780 DUF629: Protein of un 20.6 74 0.0016 27.0 2.0 25 67-93 57-81 (466)
159 COG3357 Predicted transcriptio 20.2 49 0.0011 21.2 0.7 14 96-109 57-70 (97)
160 PF03604 DNA_RNApol_7kD: DNA d 20.1 1.3E+02 0.0027 15.1 2.1 6 99-104 19-24 (32)
No 1
>KOG2462|consensus
Probab=99.94 E-value=9.4e-28 Score=178.19 Aligned_cols=129 Identities=22% Similarity=0.458 Sum_probs=114.6
Q ss_pred CCcChhccCCHHHHHHHHHhhCC---CCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHHHHH
Q psy9954 12 FPHCAKAFSRLENLKIHQRSHTG---ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKH 88 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~h~~---~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H 88 (196)
|+.|||.+.+.++|.+|..+|.. .+.+.|++ |++.|.+...|+.|+++|. .+++|.+ |||.|.+...|+-|
T Consensus 133 c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~--C~K~YvSmpALkMHirTH~--l~c~C~i--CGKaFSRPWLLQGH 206 (279)
T KOG2462|consen 133 CPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKY--CGKVYVSMPALKMHIRTHT--LPCECGI--CGKAFSRPWLLQGH 206 (279)
T ss_pred ccccccccccccccchhhcccccccccccccCCC--CCceeeehHHHhhHhhccC--CCccccc--ccccccchHHhhcc
Confidence 55799999999999999999864 56789965 9999999999999999986 6889988 99999999999999
Q ss_pred hhhcCCCCCCccccccccCCCCCCccccccccCCCCCCCCCcccccCCCcccccccchhhee
Q psy9954 89 AKNHNHDHLTPAKMRKLNYAKPGDIVPSVRNVNSSVPLNPDFTVFSCGEPNLLMESYELQTV 150 (196)
Q Consensus 89 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~h~~ 150 (196)
+|+|+|+|||.|..|++.|..+++|+.||.+|...+. +.|..|++.|..+.-|..|..
T Consensus 207 iRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~----~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 207 IRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKK----HQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred cccccCCCCccCCcccchhcchHHHHHHHHhhcCCcc----ccCcchhhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999988776 488889998888887777754
No 2
>KOG2462|consensus
Probab=99.92 E-value=8e-27 Score=173.28 Aligned_cols=103 Identities=29% Similarity=0.497 Sum_probs=98.5
Q ss_pred CCCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHHHHHhh
Q psy9954 11 QFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAK 90 (196)
Q Consensus 11 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~ 90 (196)
+|++|||.|.+.-.|+.|+|+|. -+++|.+ ||+.|.+..-|+.|+|+|+|||||.|+. |+|.|.++++|+.||+
T Consensus 163 ~C~~C~K~YvSmpALkMHirTH~--l~c~C~i--CGKaFSRPWLLQGHiRTHTGEKPF~C~h--C~kAFADRSNLRAHmQ 236 (279)
T KOG2462|consen 163 SCKYCGKVYVSMPALKMHIRTHT--LPCECGI--CGKAFSRPWLLQGHIRTHTGEKPFSCPH--CGKAFADRSNLRAHMQ 236 (279)
T ss_pred cCCCCCceeeehHHHhhHhhccC--CCccccc--ccccccchHHhhcccccccCCCCccCCc--ccchhcchHHHHHHHH
Confidence 57799999999999999999997 6799977 9999999999999999999999999988 9999999999999999
Q ss_pred hcCCCCCCccccccccCCCCCCccccccc
Q psy9954 91 NHNHDHLTPAKMRKLNYAKPGDIVPSVRN 119 (196)
Q Consensus 91 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 119 (196)
+|.+.|.|+|..|++.|...+.|.+|...
T Consensus 237 THS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 237 THSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred hhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 99999999999999999999999999863
No 3
>KOG1074|consensus
Probab=99.84 E-value=9e-22 Score=164.34 Aligned_cols=86 Identities=16% Similarity=0.297 Sum_probs=78.1
Q ss_pred ceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCCCCCCccccccccCCCCCCCCCcccc---cCCCcccccc
Q psy9954 67 PYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAKPGDIVPSVRNVNSSVPLNPDFTVF---SCGEPNLLME 143 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~---~c~~~~~~~~ 143 (196)
|-.|.+ |.++..-++.|+.|.|+|+++++|+|.+|++.|.++++|+.|+..|-..-+....+.|. .|.+.|....
T Consensus 605 PNqCii--C~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V 682 (958)
T KOG1074|consen 605 PNQCII--CLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAV 682 (958)
T ss_pred ccceee--eeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccc
Confidence 689999 99999999999999999999999999999999999999999999988777766667777 8899999999
Q ss_pred cchhheeeccc
Q psy9954 144 SYELQTVTHDH 154 (196)
Q Consensus 144 ~~~~h~~~~~~ 154 (196)
.+..|.+.|..
T Consensus 683 ~lpQhIriH~~ 693 (958)
T KOG1074|consen 683 TLPQHIRIHLG 693 (958)
T ss_pred cccceEEeecC
Confidence 99999887753
No 4
>KOG3576|consensus
Probab=99.73 E-value=2e-19 Score=128.18 Aligned_cols=113 Identities=29% Similarity=0.528 Sum_probs=96.3
Q ss_pred cccCCCCCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHH
Q psy9954 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSL 85 (196)
Q Consensus 6 ~~~C~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l 85 (196)
.|.|. +|+|.|.-..-|.+|++-|...+.|-|.. ||+.|...-+|++|+++|+|.+||+|.. |++.|..+-.|
T Consensus 117 ~ftCr---vCgK~F~lQRmlnrh~kch~~vkr~lct~--cgkgfndtfdlkrh~rthtgvrpykc~~--c~kaftqrcsl 189 (267)
T KOG3576|consen 117 SFTCR---VCGKKFGLQRMLNRHLKCHSDVKRHLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCSL--CEKAFTQRCSL 189 (267)
T ss_pred eeeee---hhhhhhhHHHHHHHHhhhccHHHHHHHhh--ccCcccchhhhhhhhccccCccccchhh--hhHHHHhhccH
Confidence 45566 89999998888999999999888899977 9999999999999999999999999988 99999999999
Q ss_pred HHHhhhcCC-----------CCCCccccccccCCCCCCccccccccCCCCC
Q psy9954 86 RKHAKNHNH-----------DHLTPAKMRKLNYAKPGDIVPSVRNVNSSVP 125 (196)
Q Consensus 86 ~~H~~~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~ 125 (196)
..|.+.-++ .+.|.|..||++-.+...+..|++.+|...+
T Consensus 190 eshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp 240 (267)
T KOG3576|consen 190 ESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP 240 (267)
T ss_pred HHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence 999865443 4568899999999999999999988887654
No 5
>KOG1074|consensus
Probab=99.71 E-value=3.3e-18 Score=143.28 Aligned_cols=51 Identities=35% Similarity=0.698 Sum_probs=48.6
Q ss_pred CCCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHHcC
Q psy9954 11 QFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63 (196)
Q Consensus 11 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~ 63 (196)
||-+|-+...-++.|+.|.|+|+|++||+|++ ||++|.++.+|+.||.+|.
T Consensus 607 qCiiC~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vHk 657 (958)
T KOG1074|consen 607 QCIICLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVHK 657 (958)
T ss_pred ceeeeeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhcccccc
Confidence 57799999999999999999999999999988 9999999999999999886
No 6
>KOG3608|consensus
Probab=99.67 E-value=1.3e-17 Score=127.92 Aligned_cols=137 Identities=19% Similarity=0.422 Sum_probs=94.0
Q ss_pred cccCCCCCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHH--cCCCCceeeccCccCccCCChH
Q psy9954 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRT--HFDTRPYKCMYKGCTKRYTDPS 83 (196)
Q Consensus 6 ~~~C~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~ 83 (196)
.+.|. +..|-+.|.+++.|++|+++|+++|...|+. ||..|.++..|..|.+. -....+|.|.. |.|.|.+..
T Consensus 177 v~~C~-W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~--Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~--C~KrFaTek 251 (467)
T KOG3608|consen 177 VTMCN-WAMCTKHMGNKYRLREHIRTHSNEKVVACPH--CGELFRTKTKLFDHLRRQTELNTNSFQCAQ--CFKRFATEK 251 (467)
T ss_pred eeecc-chhhhhhhccHHHHHHHHHhcCCCeEEecch--HHHHhccccHHHHHHHhhhhhcCCchHHHH--HHHHHhHHH
Confidence 35687 8899999999999999999999999999965 99999999999999764 33345677766 777777777
Q ss_pred HHHHHhhhcCCCCCCccccccccCCCCCCccccccccCCCCCCCCCcccccCCCcccccccchhheeec
Q psy9954 84 SLRKHAKNHNHDHLTPAKMRKLNYAKPGDIVPSVRNVNSSVPLNPDFTVFSCGEPNLLMESYELQTVTH 152 (196)
Q Consensus 84 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~h~~~~ 152 (196)
.|..|+..|- .-|+|+.|+++...+++|..|++..|+. +..++|..|+..+.....|..|...|
T Consensus 252 lL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~---dkpfKCd~Cd~~c~~esdL~kH~~~H 315 (467)
T KOG3608|consen 252 LLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSK---DKPFKCDECDTRCVRESDLAKHVQVH 315 (467)
T ss_pred HHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhcc---CCCccccchhhhhccHHHHHHHHHhc
Confidence 7776666553 3456666666666666666666644433 12234444444444444444444433
No 7
>KOG3576|consensus
Probab=99.64 E-value=1.1e-17 Score=119.30 Aligned_cols=117 Identities=18% Similarity=0.374 Sum_probs=99.6
Q ss_pred CCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCCCCCCcc
Q psy9954 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAKPGDIV 114 (196)
Q Consensus 35 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 114 (196)
...|.|.+ |++.|..+.-|.+|++-|...+.|-|.+ ||+.|.+-..|++|+|+|++.++|+|..|++.|..+-+|.
T Consensus 115 ~d~ftCrv--CgK~F~lQRmlnrh~kch~~vkr~lct~--cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsle 190 (267)
T KOG3576|consen 115 QDSFTCRV--CGKKFGLQRMLNRHLKCHSDVKRHLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLE 190 (267)
T ss_pred CCeeeeeh--hhhhhhHHHHHHHHhhhccHHHHHHHhh--ccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHH
Confidence 44699987 9999999999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred ccccccCCCCC-------CCCCcccccCCCcccccccchhheeecccc
Q psy9954 115 PSVRNVNSSVP-------LNPDFTVFSCGEPNLLMESYELQTVTHDHM 155 (196)
Q Consensus 115 ~H~~~~~~~~~-------~~~~~~~~~c~~~~~~~~~~~~h~~~~~~~ 155 (196)
.|++..|+... ....+.|..||......+.+..|...++..
T Consensus 191 shl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~ 238 (267)
T KOG3576|consen 191 SHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF 238 (267)
T ss_pred HHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence 99999887532 122345666676666677777777666443
No 8
>KOG3623|consensus
Probab=99.63 E-value=1.4e-16 Score=131.92 Aligned_cols=105 Identities=24% Similarity=0.497 Sum_probs=93.9
Q ss_pred CCCcChhccCCHHHHHHHHHh-hC-CCCceeecccccccccccchhHHHHHHHcCC-------------CCceeeccCcc
Q psy9954 11 QFPHCAKAFSRLENLKIHQRS-HT-GERPYSCTYEGCHKAFSNSSDRAKHQRTHFD-------------TRPYKCMYKGC 75 (196)
Q Consensus 11 ~C~~C~k~f~~~~~L~~H~~~-h~-~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-------------~~~~~C~~~~C 75 (196)
+|++|.+.+.+...|+.|++. |. .+..|.|.. |.++|.....|.+||..|.. .+.|+|.. |
T Consensus 212 tcpycdrgykrltslkeHikyrhekne~nfsC~l--CsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtE--C 287 (1007)
T KOG3623|consen 212 TCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCML--CSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTE--C 287 (1007)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchh--hhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccc--c
Confidence 578999999999999999875 43 344699966 99999999999999998752 25699977 9
Q ss_pred CccCCChHHHHHHhhhcCCCCCCccccccccCCCCCCccccccc
Q psy9954 76 TKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAKPGDIVPSVRN 119 (196)
Q Consensus 76 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 119 (196)
+|.|..+..|+.|+|+|.|+|+|.|+.|++.|...+++..||..
T Consensus 288 gKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 288 GKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred chhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence 99999999999999999999999999999999999999999963
No 9
>KOG3608|consensus
Probab=99.59 E-value=1.8e-16 Score=121.66 Aligned_cols=111 Identities=21% Similarity=0.408 Sum_probs=64.0
Q ss_pred CCCCCcChhccCCHHHHHHHHHh-hCCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHHHH
Q psy9954 9 CSQFPHCAKAFSRLENLKIHQRS-HTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRK 87 (196)
Q Consensus 9 C~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~ 87 (196)
|.+||.|..+....+.|..||+. |...+||+| ++|.+.|.+..+|.+|..+|. +..|.|.+++|...|.+...+++
T Consensus 263 ~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKC--d~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~ 339 (467)
T KOG3608|consen 263 CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKC--DECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRR 339 (467)
T ss_pred cccccccccCCCChHHHHHHHHhhhccCCCccc--cchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHH
Confidence 44555566666666666666554 555566666 336666666666666665555 44566665556666666666666
Q ss_pred HhhhcC-C--CCCCccccccccCCCCCCccccccccCC
Q psy9954 88 HAKNHN-H--DHLTPAKMRKLNYAKPGDIVPSVRNVNS 122 (196)
Q Consensus 88 H~~~h~-~--~~~~~C~~C~~~f~~~~~l~~H~~~~~~ 122 (196)
|++.++ + .-+|.|..|++.|.+-.+|..|+...|+
T Consensus 340 H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~ 377 (467)
T KOG3608|consen 340 HFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHG 377 (467)
T ss_pred HHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhc
Confidence 655443 2 2345666666666666666666655554
No 10
>KOG3623|consensus
Probab=99.55 E-value=1e-15 Score=126.88 Aligned_cols=79 Identities=35% Similarity=0.796 Sum_probs=55.4
Q ss_pred ccccCCCCCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHH
Q psy9954 5 FDFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSS 84 (196)
Q Consensus 5 ~~~~C~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~ 84 (196)
..|.|++ |.|+|...+.|.+|.--|+|.+||+|.+ |.++|+.+-.|..|+|.|.|+|||.|+. |+|+|.....
T Consensus 893 gmyaCDq---CDK~FqKqSSLaRHKYEHsGqRPyqC~i--CkKAFKHKHHLtEHkRLHSGEKPfQCdK--ClKRFSHSGS 965 (1007)
T KOG3623|consen 893 GMYACDQ---CDKAFQKQSSLARHKYEHSGQRPYQCII--CKKAFKHKHHLTEHKRLHSGEKPFQCDK--CLKRFSHSGS 965 (1007)
T ss_pred ccchHHH---HHHHHHhhHHHHHhhhhhcCCCCcccch--hhHhhhhhhhhhhhhhhccCCCcchhhh--hhhhcccccc
Confidence 4566663 7777777777777777777777777755 7777777777777777777777777755 7777777777
Q ss_pred HHHHhh
Q psy9954 85 LRKHAK 90 (196)
Q Consensus 85 l~~H~~ 90 (196)
+.+||.
T Consensus 966 YSQHMN 971 (1007)
T KOG3623|consen 966 YSQHMN 971 (1007)
T ss_pred hHhhhc
Confidence 777764
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.22 E-value=1.3e-11 Score=102.50 Aligned_cols=99 Identities=15% Similarity=0.311 Sum_probs=59.5
Q ss_pred CCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCC----------C
Q psy9954 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYT----------D 81 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~----------~ 81 (196)
|+.|++.|. ...|..|+++|+ +++.| + |++.+ ....|..|+.+|.+.+++.|++ |++.|. .
T Consensus 456 C~~Cgk~f~-~s~LekH~~~~H--kpv~C--p-Cg~~~-~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g~~~~d~~d~ 526 (567)
T PLN03086 456 CEKCGQAFQ-QGEMEKHMKVFH--EPLQC--P-CGVVL-EKEQMVQHQASTCPLRLITCRF--CGDMVQAGGSAMDVRDR 526 (567)
T ss_pred CCCCCCccc-hHHHHHHHHhcC--CCccC--C-CCCCc-chhHHHhhhhccCCCCceeCCC--CCCccccCccccchhhh
Confidence 445666664 456666766653 56666 4 66544 4466666666666666777766 766664 1
Q ss_pred hHHHHHHhhhcCCCCCCccccccccCCCCCCccccccccC
Q psy9954 82 PSSLRKHAKNHNHDHLTPAKMRKLNYAKPGDIVPSVRNVN 121 (196)
Q Consensus 82 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~ 121 (196)
.+.|..|+.. .+.+++.|..|++.+..+ +|..|+...|
T Consensus 527 ~s~Lt~HE~~-CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h 564 (567)
T PLN03086 527 LRGMSEHESI-CGSRTAPCDSCGRSVMLK-EMDIHQIAVH 564 (567)
T ss_pred hhhHHHHHHh-cCCcceEccccCCeeeeh-hHHHHHHHhh
Confidence 3456666665 366666676676655544 4555554444
No 12
>PHA00733 hypothetical protein
Probab=99.12 E-value=1.6e-11 Score=84.13 Aligned_cols=83 Identities=13% Similarity=0.223 Sum_probs=66.5
Q ss_pred CCCceeecccccccccccchhHHHH--HH---HcCCCCceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCC
Q psy9954 34 GERPYSCTYEGCHKAFSNSSDRAKH--QR---THFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYA 108 (196)
Q Consensus 34 ~~~~~~C~~~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 108 (196)
..+++.|.+ |...|.....|..+ ++ .+.+.+||.|+. |++.|.....|..|++.+ ..+|.|..|++.|.
T Consensus 37 ~~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~--Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~ 110 (128)
T PHA00733 37 EQKRLIRAV--VKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPL--CLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFR 110 (128)
T ss_pred hhhhHHHHH--HhhhccChhhhcchHHHHhhcccCCCCCccCCC--CCCcCCCHHHHHHHHhcC--CcCccCCCCCCccC
Confidence 356789976 98888777766665 22 234578999977 999999999999999876 45689999999999
Q ss_pred CCCCccccccccCC
Q psy9954 109 KPGDIVPSVRNVNS 122 (196)
Q Consensus 109 ~~~~l~~H~~~~~~ 122 (196)
....|..|+...|+
T Consensus 111 ~~~sL~~H~~~~h~ 124 (128)
T PHA00733 111 NTDSTLDHVCKKHN 124 (128)
T ss_pred CHHHHHHHHHHhcC
Confidence 99999999987775
No 13
>PHA00733 hypothetical protein
Probab=99.02 E-value=2.4e-10 Score=78.35 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=67.1
Q ss_pred ccccCCCCCcChhccCCHHHHHHH--HH---hhCCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccC
Q psy9954 5 FDFLCSQFPHCAKAFSRLENLKIH--QR---SHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRY 79 (196)
Q Consensus 5 ~~~~C~~C~~C~k~f~~~~~L~~H--~~---~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f 79 (196)
+++.|. +|.+.|.....|..+ ++ .+.+.++|.|.. |++.|.....|..|++.+ +.+|.|.. |++.|
T Consensus 39 ~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~--Cgk~Fss~s~L~~H~r~h--~~~~~C~~--CgK~F 109 (128)
T PHA00733 39 KRLIRA---VVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPL--CLMPFSSSVSLKQHIRYT--EHSKVCPV--CGKEF 109 (128)
T ss_pred hhHHHH---HHhhhccChhhhcchHHHHhhcccCCCCCccCCC--CCCcCCCHHHHHHHHhcC--CcCccCCC--CCCcc
Confidence 456666 799999888877666 22 234578999955 999999999999999976 45799988 99999
Q ss_pred CChHHHHHHhhhcCCC
Q psy9954 80 TDPSSLRKHAKNHNHD 95 (196)
Q Consensus 80 ~~~~~l~~H~~~h~~~ 95 (196)
.....|..|+...++.
T Consensus 110 ~~~~sL~~H~~~~h~~ 125 (128)
T PHA00733 110 RNTDSTLDHVCKKHNI 125 (128)
T ss_pred CCHHHHHHHHHHhcCc
Confidence 9999999999877654
No 14
>PHA02768 hypothetical protein; Provisional
Probab=98.96 E-value=4.6e-10 Score=64.19 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=35.2
Q ss_pred ceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCCCCCCccc
Q psy9954 67 PYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAKPGDIVP 115 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~ 115 (196)
.|+|+. ||+.|...++|..|+++|+ ++++|..|++.|...+.|..
T Consensus 5 ~y~C~~--CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~~ 49 (55)
T PHA02768 5 GYECPI--CGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYIE 49 (55)
T ss_pred ccCcch--hCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeEE
Confidence 478876 8888888888888888877 57788888888887776653
No 15
>PHA02768 hypothetical protein; Provisional
Probab=98.94 E-value=4.6e-10 Score=64.17 Aligned_cols=44 Identities=14% Similarity=0.433 Sum_probs=30.3
Q ss_pred cccCCCCCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHH
Q psy9954 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRA 56 (196)
Q Consensus 6 ~~~C~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~ 56 (196)
.|.|. .||+.|.+.++|..||++|. ++|+|. +|++.|...+.|.
T Consensus 5 ~y~C~---~CGK~Fs~~~~L~~H~r~H~--k~~kc~--~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECP---ICGEIYIKRKSMITHLRKHN--TNLKLS--NCKRISLRTGEYI 48 (55)
T ss_pred ccCcc---hhCCeeccHHHHHHHHHhcC--CcccCC--cccceecccceeE
Confidence 35454 57888888888888887777 577774 4777777665553
No 16
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.85 E-value=1.4e-09 Score=90.67 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=73.6
Q ss_pred CceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCCC------
Q psy9954 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAK------ 109 (196)
Q Consensus 36 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~------ 109 (196)
+.+.|+. |++.|. ...|..|+..++ +++.| + |++.+ .+..|..|+.+|...+++.|..|++.+..
T Consensus 452 ~H~~C~~--Cgk~f~-~s~LekH~~~~H--kpv~C--p-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d 522 (567)
T PLN03086 452 NHVHCEK--CGQAFQ-QGEMEKHMKVFH--EPLQC--P-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMD 522 (567)
T ss_pred cCccCCC--CCCccc-hHHHHHHHHhcC--CCccC--C-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccc
Confidence 3468965 999996 688999999875 78999 4 99755 67999999999999999999999999952
Q ss_pred ----CCCccccccccCCCCCCCCCcccccCCCcccccc
Q psy9954 110 ----PGDIVPSVRNVNSSVPLNPDFTVFSCGEPNLLME 143 (196)
Q Consensus 110 ----~~~l~~H~~~~~~~~~~~~~~~~~~c~~~~~~~~ 143 (196)
...|..|.... +..+ ..|..|+..+.+.+
T Consensus 523 ~~d~~s~Lt~HE~~C-G~rt----~~C~~Cgk~Vrlrd 555 (567)
T PLN03086 523 VRDRLRGMSEHESIC-GSRT----APCDSCGRSVMLKE 555 (567)
T ss_pred hhhhhhhHHHHHHhc-CCcc----eEccccCCeeeehh
Confidence 23678887763 4444 47788887766544
No 17
>KOG3993|consensus
Probab=98.68 E-value=2.8e-09 Score=84.32 Aligned_cols=84 Identities=29% Similarity=0.572 Sum_probs=68.3
Q ss_pred ccccccCCCCCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHHcCC------------------
Q psy9954 3 TIFDFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFD------------------ 64 (196)
Q Consensus 3 ~~~~~~C~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~------------------ 64 (196)
-|.+|+|. .|-..|.+.-.|.+|.-.-.-..-|+| ++|++.|.-..+|..|.|+|-.
T Consensus 264 ~iGdyiCq---LCK~kYeD~F~LAQHrC~RIV~vEYrC--PEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~ 338 (500)
T KOG3993|consen 264 VIGDYICQ---LCKEKYEDAFALAQHRCPRIVHVEYRC--PECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVET 338 (500)
T ss_pred cHHHHHHH---HHHHhhhhHHHHhhccCCeeEEeeecC--CcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhh
Confidence 35678888 899999999999999643222235999 6799999999999999998741
Q ss_pred ---------------CCceeeccCccCccCCChHHHHHHhhhcC
Q psy9954 65 ---------------TRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93 (196)
Q Consensus 65 ---------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~ 93 (196)
+..|.|.. |++.|.+...|+.|+.+|+
T Consensus 339 rae~~ea~rsg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq 380 (500)
T KOG3993|consen 339 RAEVQEAERSGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQ 380 (500)
T ss_pred hhhhhhccccCCcccCceeecHH--hhhhhHHHHHHHHhHHhhh
Confidence 12499988 9999999999999988876
No 18
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.67 E-value=2.1e-08 Score=49.03 Aligned_cols=24 Identities=63% Similarity=1.323 Sum_probs=14.5
Q ss_pred HHHHHHhhCCCCceeecccccccccc
Q psy9954 25 LKIHQRSHTGERPYSCTYEGCHKAFS 50 (196)
Q Consensus 25 L~~H~~~h~~~~~~~C~~~~C~~~f~ 50 (196)
|..||++|++++||.|+. |++.|.
T Consensus 2 l~~H~~~H~~~k~~~C~~--C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPY--CGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESS--SSEEES
T ss_pred HHHHhhhcCCCCCCCCCC--CcCeeC
Confidence 556666666666666643 666654
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.62 E-value=2.7e-08 Score=48.64 Aligned_cols=25 Identities=44% Similarity=1.016 Sum_probs=17.4
Q ss_pred hHHHHHHHcCCCCceeeccCccCccCC
Q psy9954 54 DRAKHQRTHFDTRPYKCMYKGCTKRYT 80 (196)
Q Consensus 54 ~l~~H~~~h~~~~~~~C~~~~C~~~f~ 80 (196)
+|.+|+++|.+++||+|+. |++.|.
T Consensus 1 ~l~~H~~~H~~~k~~~C~~--C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPY--CGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEESS--SSEEES
T ss_pred CHHHHhhhcCCCCCCCCCC--CcCeeC
Confidence 3667777777777777766 777665
No 20
>PHA00616 hypothetical protein
Probab=98.35 E-value=2.9e-07 Score=50.17 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=24.3
Q ss_pred CCcChhccCCHHHHHHHHHhhCCCCceeecc
Q psy9954 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTY 42 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~ 42 (196)
|+.||+.|...+.|..|++.|++++++.|+.
T Consensus 4 C~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 4 CLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred cchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 3368888888888888888888888887753
No 21
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=98.27 E-value=4.7e-07 Score=69.50 Aligned_cols=54 Identities=24% Similarity=0.527 Sum_probs=40.2
Q ss_pred CCceeeccCccCccCCChHHHHHHhhh-c------------------CCCCCCccccccccCCCCCCcccccc
Q psy9954 65 TRPYKCMYKGCTKRYTDPSSLRKHAKN-H------------------NHDHLTPAKMRKLNYAKPGDIVPSVR 118 (196)
Q Consensus 65 ~~~~~C~~~~C~~~f~~~~~l~~H~~~-h------------------~~~~~~~C~~C~~~f~~~~~l~~H~~ 118 (196)
+|||+|++.+|.|.+.....|+.|+.- | ..+|||.|++|++.|+.-..|+-|+.
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence 366666666666666666666666642 2 13589999999999999999999986
No 22
>PHA00616 hypothetical protein
Probab=98.27 E-value=3.5e-07 Score=49.87 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=13.6
Q ss_pred cccccccchhHHHHHHHcCCCCceeec
Q psy9954 45 CHKAFSNSSDRAKHQRTHFDTRPYKCM 71 (196)
Q Consensus 45 C~~~f~~~~~l~~H~~~h~~~~~~~C~ 71 (196)
||+.|..+.+|.+|++.|++++++.|+
T Consensus 7 CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 7 CGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred hhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 555555555555555555555554443
No 23
>PHA00732 hypothetical protein
Probab=98.24 E-value=9.6e-07 Score=55.18 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=25.2
Q ss_pred ceeeccCccCccCCChHHHHHHhhh-cCCCCCCccccccccCCCCCCccccccc
Q psy9954 67 PYKCMYKGCTKRYTDPSSLRKHAKN-HNHDHLTPAKMRKLNYAKPGDIVPSVRN 119 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 119 (196)
||.|.. |++.|.+...|..|++. |. ++.|+.|++.|. .|..|++.
T Consensus 1 py~C~~--Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 1 MFKCPI--CGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS 46 (79)
T ss_pred CccCCC--CCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence 355655 66666666666666653 33 235666666665 35555543
No 24
>KOG3993|consensus
Probab=98.19 E-value=2.4e-07 Score=73.61 Aligned_cols=83 Identities=16% Similarity=0.365 Sum_probs=69.1
Q ss_pred eeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHHHHHhhhcCC-----------------------
Q psy9954 38 YSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHNH----------------------- 94 (196)
Q Consensus 38 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----------------------- 94 (196)
|.|.. |...|...-.|.+|.-.-....-|+|+. |+|.|.-..+|..|.|+|..
T Consensus 268 yiCqL--CK~kYeD~F~LAQHrC~RIV~vEYrCPE--C~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ 343 (500)
T KOG3993|consen 268 YICQL--CKEKYEDAFALAQHRCPRIVHVEYRCPE--CDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQ 343 (500)
T ss_pred HHHHH--HHHhhhhHHHHhhccCCeeEEeeecCCc--ccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhh
Confidence 89977 9999999999999975433344599977 99999999999999999862
Q ss_pred ----------CCCCccccccccCCCCCCccccccccCCCC
Q psy9954 95 ----------DHLTPAKMRKLNYAKPGDIVPSVRNVNSSV 124 (196)
Q Consensus 95 ----------~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~ 124 (196)
+..|.|..|++.|.+...|+.|...|+...
T Consensus 344 ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~ 383 (500)
T KOG3993|consen 344 EAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP 383 (500)
T ss_pred hccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence 113889999999999999999988887543
No 25
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=98.14 E-value=6.7e-07 Score=68.69 Aligned_cols=55 Identities=36% Similarity=0.827 Sum_probs=47.3
Q ss_pred CCCceeecccccccccccchhHHHHHHH-cC------------------CCCceeeccCccCccCCChHHHHHHhh
Q psy9954 34 GERPYSCTYEGCHKAFSNSSDRAKHQRT-HF------------------DTRPYKCMYKGCTKRYTDPSSLRKHAK 90 (196)
Q Consensus 34 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~ 90 (196)
++|||+|++++|.+.++.+..|+.|+.. |. ..|||.|++ |+|++.....|+.|+.
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCev--C~KRYKNlNGLKYHr~ 419 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKRYKNLNGLKYHRK 419 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccc--cchhhccCccceeccc
Confidence 3589999999999999999999999874 31 348999999 9999999999999965
No 26
>PHA00732 hypothetical protein
Probab=97.99 E-value=4.1e-06 Score=52.32 Aligned_cols=47 Identities=30% Similarity=0.537 Sum_probs=33.8
Q ss_pred cccCCCCCcChhccCCHHHHHHHHHh-hCCCCceeecccccccccccchhHHHHHHHcC
Q psy9954 6 DFLCSQFPHCAKAFSRLENLKIHQRS-HTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63 (196)
Q Consensus 6 ~~~C~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~ 63 (196)
||.|. .|++.|.+...|+.|++. |.+ +.|+. |++.|. .+..|+.+..
T Consensus 1 py~C~---~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~--CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCP---ICGFTTVTLFALKQHARRNHTL---TKCPV--CNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCC---CCCCccCCHHHHHHHhhcccCC---CccCC--CCCEeC---ChhhhhcccC
Confidence 45565 688888888888888874 543 57844 888887 4777876543
No 27
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.90 E-value=9.7e-06 Score=52.94 Aligned_cols=74 Identities=20% Similarity=0.465 Sum_probs=21.9
Q ss_pred CCCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHHHHHhh
Q psy9954 11 QFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAK 90 (196)
Q Consensus 11 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~ 90 (196)
||.+|+..|.+...|..||...++-.. . ....+.....+..+++.-. ...+.|.. |++.|.+...|..|++
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~-~-----~~~~l~~~~~~~~~~~~~~-~~~~~C~~--C~~~f~s~~~l~~Hm~ 71 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDI-P-----DQKYLVDPNRLLNYLRKKV-KESFRCPY--CNKTFRSREALQEHMR 71 (100)
T ss_dssp -------------------------------------------------------SSEEBSS--SS-EESSHHHHHHHHH
T ss_pred Ccccccccccccccccccccccccccc-c-----ccccccccccccccccccc-CCCCCCCc--cCCCCcCHHHHHHHHc
Confidence 578999999999999999976443221 1 1112223344444443222 23699988 9999999999999998
Q ss_pred hcC
Q psy9954 91 NHN 93 (196)
Q Consensus 91 ~h~ 93 (196)
.+.
T Consensus 72 ~~~ 74 (100)
T PF12756_consen 72 SKH 74 (100)
T ss_dssp HTT
T ss_pred Ccc
Confidence 653
No 28
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.88 E-value=2.5e-05 Score=45.20 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=25.4
Q ss_pred CCcChhccCCHHHHHHHHHh-hCCC-CceeecccccccccccchhHHHHHHHc
Q psy9954 12 FPHCAKAFSRLENLKIHQRS-HTGE-RPYSCTYEGCHKAFSNSSDRAKHQRTH 62 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~-h~~~-~~~~C~~~~C~~~f~~~~~l~~H~~~h 62 (196)
||+|++ ..+...|..|... |..+ +.+.|++ |...+. .+|..|+..+
T Consensus 5 CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~ 52 (54)
T PF05605_consen 5 CPYCGK-GFSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQ 52 (54)
T ss_pred CCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHh
Confidence 446777 3445666666554 4432 3566755 665433 3666666543
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.79 E-value=1.5e-05 Score=37.57 Aligned_cols=22 Identities=36% Similarity=0.910 Sum_probs=13.1
Q ss_pred eeeccCccCccCCChHHHHHHhhh
Q psy9954 68 YKCMYKGCTKRYTDPSSLRKHAKN 91 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~ 91 (196)
|.|+. |++.|.+...|.+|++.
T Consensus 1 y~C~~--C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPI--CGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETT--TTEEESSHHHHHHHHHH
T ss_pred CCCCC--CCCccCCHHHHHHHHhH
Confidence 45654 66666666666666654
No 30
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.77 E-value=1e-05 Score=46.83 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=24.2
Q ss_pred eeecccccccccccchhHHHHHHH-cCCC-CceeeccCccCccCCChHHHHHHhhhc
Q psy9954 38 YSCTYEGCHKAFSNSSDRAKHQRT-HFDT-RPYKCMYKGCTKRYTDPSSLRKHAKNH 92 (196)
Q Consensus 38 ~~C~~~~C~~~f~~~~~l~~H~~~-h~~~-~~~~C~~~~C~~~f~~~~~l~~H~~~h 92 (196)
|.|++ |++. .+...|..|... |..+ +.+.|++ |...+. .+|..|+..+
T Consensus 3 f~CP~--C~~~-~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~ 52 (54)
T PF05605_consen 3 FTCPY--CGKG-FSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQ 52 (54)
T ss_pred cCCCC--CCCc-cCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHh
Confidence 55655 6663 334556666443 3332 3466655 655433 2555665544
No 31
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.75 E-value=2e-05 Score=37.08 Aligned_cols=20 Identities=55% Similarity=0.881 Sum_probs=13.6
Q ss_pred CcChhccCCHHHHHHHHHhh
Q psy9954 13 PHCAKAFSRLENLKIHQRSH 32 (196)
Q Consensus 13 ~~C~k~f~~~~~L~~H~~~h 32 (196)
++|++.|.++..|..|++.|
T Consensus 4 ~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 4 PICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp TTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHhHC
Confidence 35777777777777777654
No 32
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.53 E-value=8.4e-05 Score=35.02 Aligned_cols=22 Identities=36% Similarity=0.730 Sum_probs=17.4
Q ss_pred CCcChhccCCHHHHHHHHHhhC
Q psy9954 12 FPHCAKAFSRLENLKIHQRSHT 33 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~h~ 33 (196)
|++|++.|.+...|+.|+++|+
T Consensus 3 C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 3 CPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp -SSTS-EESSHHHHHHHHHHHS
T ss_pred CcCCCCcCCcHHHHHHHHHhhC
Confidence 4579999999999999998763
No 33
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.53 E-value=6.4e-05 Score=35.45 Aligned_cols=23 Identities=35% Similarity=0.873 Sum_probs=13.5
Q ss_pred eeeccCccCccCCChHHHHHHhhhc
Q psy9954 68 YKCMYKGCTKRYTDPSSLRKHAKNH 92 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~h 92 (196)
|.|+. |++.|.+...|..|+++|
T Consensus 1 ~~C~~--C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPI--CGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SS--TS-EESSHHHHHHHHHHH
T ss_pred CCCcC--CCCcCCcHHHHHHHHHhh
Confidence 45655 666666666666666654
No 34
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.50 E-value=8.8e-05 Score=36.31 Aligned_cols=25 Identities=36% Similarity=0.860 Sum_probs=18.0
Q ss_pred ceeeccCccCccCCChHHHHHHhhhcC
Q psy9954 67 PYKCMYKGCTKRYTDPSSLRKHAKNHN 93 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~~h~ 93 (196)
||+|.. |++.|.+...|..|++.|.
T Consensus 1 ~~~C~~--C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDE--CGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETT--TTEEESSHHHHHHHHCTTT
T ss_pred CCCCCc--cCCccCChhHHHHHhHHhc
Confidence 467766 7777777777777777664
No 35
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.27 E-value=0.00015 Score=35.42 Aligned_cols=24 Identities=50% Similarity=0.960 Sum_probs=14.7
Q ss_pred ccCCCCCcChhccCCHHHHHHHHHhhC
Q psy9954 7 FLCSQFPHCAKAFSRLENLKIHQRSHT 33 (196)
Q Consensus 7 ~~C~~C~~C~k~f~~~~~L~~H~~~h~ 33 (196)
|.|. .|++.|.+...|..|++.|.
T Consensus 2 ~~C~---~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 2 FECD---ECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp EEET---TTTEEESSHHHHHHHHCTTT
T ss_pred CCCC---ccCCccCChhHHHHHhHHhc
Confidence 4455 46666666666666666553
No 36
>smart00355 ZnF_C2H2 zinc finger.
Probab=97.06 E-value=0.00074 Score=32.14 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=18.3
Q ss_pred CCcChhccCCHHHHHHHHHhhC
Q psy9954 12 FPHCAKAFSRLENLKIHQRSHT 33 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~h~ 33 (196)
|+.|++.|.....|..|++.|.
T Consensus 3 C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 3 CPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCcchhCCHHHHHHHHHHhc
Confidence 4579999999999999988764
No 37
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.97 E-value=0.00082 Score=37.59 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=19.2
Q ss_pred CCcChhccCCHHHHHHHHHhhCCCCc
Q psy9954 12 FPHCAKAFSRLENLKIHQRSHTGERP 37 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~h~~~~~ 37 (196)
||+|+..+.+..+|++|+..+++.+|
T Consensus 27 CP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 27 CPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp -TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred CCcchhhccchhhHHHHHHHHhcccC
Confidence 66899999999999999988777665
No 38
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.91 E-value=6.5e-05 Score=48.97 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=21.1
Q ss_pred eecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCCCCCCcccccc
Q psy9954 39 SCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAKPGDIVPSVR 118 (196)
Q Consensus 39 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 118 (196)
+|.+ |+..|.....|..|+...++... . ....+.....+..+.+.. -...+.|..|+..|.+...|..|++
T Consensus 1 ~C~~--C~~~f~~~~~l~~H~~~~H~~~~-~-----~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~ 71 (100)
T PF12756_consen 1 QCLF--CDESFSSVDDLLQHMKKKHGFDI-P-----DQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMR 71 (100)
T ss_dssp ---------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHH
T ss_pred Cccc--ccccccccccccccccccccccc-c-----cccccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHc
Confidence 4766 99999999999999876443221 1 111223444444444322 1236889999999999999999998
Q ss_pred ccC
Q psy9954 119 NVN 121 (196)
Q Consensus 119 ~~~ 121 (196)
.+.
T Consensus 72 ~~~ 74 (100)
T PF12756_consen 72 SKH 74 (100)
T ss_dssp HTT
T ss_pred Ccc
Confidence 653
No 39
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.50 E-value=0.0018 Score=30.70 Aligned_cols=23 Identities=35% Similarity=0.859 Sum_probs=17.2
Q ss_pred eeeccCccCccCCChHHHHHHhhhc
Q psy9954 68 YKCMYKGCTKRYTDPSSLRKHAKNH 92 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~h 92 (196)
|.|.. |++.|.....|..|++.|
T Consensus 1 ~~C~~--C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPE--CGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCC--CcchhCCHHHHHHHHHHh
Confidence 46766 888888888888887755
No 40
>KOG1146|consensus
Probab=96.50 E-value=0.0076 Score=55.10 Aligned_cols=25 Identities=0% Similarity=-0.130 Sum_probs=18.5
Q ss_pred CCccccccccCCCCCCccccccccC
Q psy9954 97 LTPAKMRKLNYAKPGDIVPSVRNVN 121 (196)
Q Consensus 97 ~~~C~~C~~~f~~~~~l~~H~~~~~ 121 (196)
.+.|.+|++.-.-..+|+.|+...+
T Consensus 589 ~~~C~vc~yetniarnlrihmtss~ 613 (1406)
T KOG1146|consen 589 SWRCEVCSYETNIARNLRIHMTASP 613 (1406)
T ss_pred CcchhhhcchhhhhhccccccccCC
Confidence 3678888888888888888886443
No 41
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.36 E-value=0.0038 Score=34.96 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=14.3
Q ss_pred CCceeeccCccCccCCChHHHHHHhhhcCCCC
Q psy9954 65 TRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDH 96 (196)
Q Consensus 65 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~ 96 (196)
+.|-.|+. |+..+....+|++|+...|..+
T Consensus 22 ~~PatCP~--C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 22 EQPATCPI--CGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp S--EE-TT--T--EESSHHHHHHHHHHHTTTS
T ss_pred CCCCCCCc--chhhccchhhHHHHHHHHhccc
Confidence 44556655 6666666666666665555443
No 42
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.29 E-value=0.0022 Score=30.25 Aligned_cols=23 Identities=39% Similarity=0.805 Sum_probs=12.8
Q ss_pred eeeccCccCccCCChHHHHHHhhhcC
Q psy9954 68 YKCMYKGCTKRYTDPSSLRKHAKNHN 93 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~h~ 93 (196)
|+|+. |++... ...|.+|++.++
T Consensus 1 y~C~~--C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPH--CSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SS--SS-EES-HHHHHHHHHHHH
T ss_pred CCCCC--CCCcCC-HHHHHHHHHhhC
Confidence 55655 666665 666666666543
No 43
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=96.10 E-value=0.0059 Score=29.21 Aligned_cols=20 Identities=25% Similarity=0.640 Sum_probs=14.8
Q ss_pred CCCcChhccCCHHHHHHHHHh
Q psy9954 11 QFPHCAKAFSRLENLKIHQRS 31 (196)
Q Consensus 11 ~C~~C~k~f~~~~~L~~H~~~ 31 (196)
+|+.||+.| ....|..|+..
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHHh
Confidence 467888888 67778888653
No 44
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.10 E-value=0.0041 Score=29.58 Aligned_cols=22 Identities=32% Similarity=0.819 Sum_probs=15.0
Q ss_pred eeeccCccCccCCChHHHHHHhhh
Q psy9954 68 YKCMYKGCTKRYTDPSSLRKHAKN 91 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~ 91 (196)
|.|.. |++.|.+...|..|++.
T Consensus 1 ~~C~~--C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDI--CNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETT--TTEEESSHHHHHHHHTT
T ss_pred CCCCC--CCCCcCCHHHHHHHHCc
Confidence 56666 77777777777777654
No 45
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=96.02 E-value=0.0041 Score=50.85 Aligned_cols=115 Identities=23% Similarity=0.365 Sum_probs=71.5
Q ss_pred cccCCCCCcChhccCCHHHHHHHHH--hhCCC--CceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCC
Q psy9954 6 DFLCSQFPHCAKAFSRLENLKIHQR--SHTGE--RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTD 81 (196)
Q Consensus 6 ~~~C~~C~~C~k~f~~~~~L~~H~~--~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 81 (196)
++.|. .|...|.....|..|.+ .|.++ +++.|++..|++.|.+...+..|...|.+..++.+....+.+.+..
T Consensus 289 ~~~~~---~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (467)
T COG5048 289 PIKSK---QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSP 365 (467)
T ss_pred CCCCc---cccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccc
Confidence 45555 58888888888888888 78888 8888862248888888888888888888777777765445555444
Q ss_pred hHHHH-----HHhhhcCCCCCCccc--cccccCCCCCCccccccccCCC
Q psy9954 82 PSSLR-----KHAKNHNHDHLTPAK--MRKLNYAKPGDIVPSVRNVNSS 123 (196)
Q Consensus 82 ~~~l~-----~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~ 123 (196)
...-. .....-.....+.+. .|...+.+...+..|...+-..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (467)
T COG5048 366 LLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSF 414 (467)
T ss_pred ccCCCCccchhhccCccCCccccccccchhhhhcccccccccccccccc
Confidence 33311 111111222233332 3555555555555555544433
No 46
>KOG1146|consensus
Probab=95.95 E-value=0.0032 Score=57.37 Aligned_cols=111 Identities=17% Similarity=0.337 Sum_probs=75.8
Q ss_pred ccccccCCCCCcChhccCCHHHHHHHHHh-hC------------------------CCCceeecccccccccccchhHHH
Q psy9954 3 TIFDFLCSQFPHCAKAFSRLENLKIHQRS-HT------------------------GERPYSCTYEGCHKAFSNSSDRAK 57 (196)
Q Consensus 3 ~~~~~~C~~C~~C~k~f~~~~~L~~H~~~-h~------------------------~~~~~~C~~~~C~~~f~~~~~l~~ 57 (196)
.++.|.|. .|+..|+....|..|||. |. +.++|.|.. |...+..+.+|..
T Consensus 462 ~~kt~~cp---kc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~--C~~stttng~Lsi 536 (1406)
T KOG1146|consen 462 FFKTLKCP---KCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRA--CNYSTTTNGNLSI 536 (1406)
T ss_pred ccccccCC---ccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCccccee--eeeeeecchHHHH
Confidence 34555666 588888888888888887 22 135688855 8888888888888
Q ss_pred HHHH--cC-----------------------------------C------CCceeeccCccCccCCChHHHHHHhhhc-C
Q psy9954 58 HQRT--HF-----------------------------------D------TRPYKCMYKGCTKRYTDPSSLRKHAKNH-N 93 (196)
Q Consensus 58 H~~~--h~-----------------------------------~------~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~ 93 (196)
|+.. |. + +..|.|.. |++--.-..+|+.||..- +
T Consensus 537 hlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~v--c~yetniarnlrihmtss~~ 614 (1406)
T KOG1146|consen 537 HLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEV--CSYETNIARNLRIHMTASPS 614 (1406)
T ss_pred HHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhh--hcchhhhhhccccccccCCC
Confidence 8753 11 0 11478877 888877788888888643 3
Q ss_pred CCCCCccccccccCCCCCCcccccccc
Q psy9954 94 HDHLTPAKMRKLNYAKPGDIVPSVRNV 120 (196)
Q Consensus 94 ~~~~~~C~~C~~~f~~~~~l~~H~~~~ 120 (196)
-..+--+..++..+.....+..+.+.+
T Consensus 615 s~~p~~~Lq~~it~~l~~~~~~~~~lp 641 (1406)
T KOG1146|consen 615 SSPPSLVLQQNITSSLASLLGGQGRLP 641 (1406)
T ss_pred CCChHHHhhhcchhhccccccCcCCCC
Confidence 333366777777777777777666654
No 47
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.88 E-value=0.0051 Score=29.22 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=12.7
Q ss_pred CcChhccCCHHHHHHHHHh
Q psy9954 13 PHCAKAFSRLENLKIHQRS 31 (196)
Q Consensus 13 ~~C~k~f~~~~~L~~H~~~ 31 (196)
.+|++.|.+...|+.|++.
T Consensus 4 ~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 4 DICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp TTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCcCCHHHHHHHHCc
Confidence 3677777777777777654
No 48
>PRK04860 hypothetical protein; Provisional
Probab=95.69 E-value=0.0068 Score=43.21 Aligned_cols=40 Identities=18% Similarity=0.460 Sum_probs=32.7
Q ss_pred ceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCCCCCC
Q psy9954 67 PYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAKPGD 112 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~ 112 (196)
+|.|. |+. ....+.+|.++|.++++|.|..|+..|.....
T Consensus 119 ~Y~C~---C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~~ 158 (160)
T PRK04860 119 PYRCK---CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKGE 158 (160)
T ss_pred EEEcC---CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEecc
Confidence 68883 887 77788999999999999999999988765543
No 49
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.46 E-value=0.003 Score=30.76 Aligned_cols=22 Identities=45% Similarity=0.809 Sum_probs=17.5
Q ss_pred ccCCCCCcChhccCCHHHHHHHHHh
Q psy9954 7 FLCSQFPHCAKAFSRLENLKIHQRS 31 (196)
Q Consensus 7 ~~C~~C~~C~k~f~~~~~L~~H~~~ 31 (196)
|.|. +|++.|.+...|..|+++
T Consensus 2 ~~C~---~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCD---ACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBT---TTTBBBSSHHHHHCCTTS
T ss_pred CCcc---cCCCCcCCHHHHHHHHcc
Confidence 4455 799999999999888765
No 50
>PRK04860 hypothetical protein; Provisional
Probab=95.15 E-value=0.019 Score=40.98 Aligned_cols=38 Identities=24% Similarity=0.613 Sum_probs=31.9
Q ss_pred ceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCCh
Q psy9954 37 PYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDP 82 (196)
Q Consensus 37 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 82 (196)
+|.| . |+. ....+.+|.++|.++++|.|.. |+..|...
T Consensus 119 ~Y~C--~-C~~---~~~~~rrH~ri~~g~~~YrC~~--C~~~l~~~ 156 (160)
T PRK04860 119 PYRC--K-CQE---HQLTVRRHNRVVRGEAVYRCRR--CGETLVFK 156 (160)
T ss_pred EEEc--C-CCC---eeCHHHHHHHHhcCCccEECCC--CCceeEEe
Confidence 5899 4 886 6778899999999999999977 99888654
No 51
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=94.91 E-value=0.022 Score=26.67 Aligned_cols=18 Identities=44% Similarity=0.689 Sum_probs=10.5
Q ss_pred cChhccCCHHHHHHHHHhh
Q psy9954 14 HCAKAFSRLENLKIHQRSH 32 (196)
Q Consensus 14 ~C~k~f~~~~~L~~H~~~h 32 (196)
.|+.... ...|..|++.|
T Consensus 5 ~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 5 HCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp SSS-EES-HHHHHHHHHHH
T ss_pred CCCCcCC-HHHHHHHHHhh
Confidence 4666665 66666666654
No 52
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.91 E-value=0.0097 Score=28.92 Aligned_cols=22 Identities=27% Similarity=0.720 Sum_probs=14.3
Q ss_pred eeeccCccCccCCChHHHHHHhhh
Q psy9954 68 YKCMYKGCTKRYTDPSSLRKHAKN 91 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~ 91 (196)
|.|.. |++.|.+...|..|+++
T Consensus 2 ~~C~~--C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDA--CDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred CCccc--CCCCcCCHHHHHHHHcc
Confidence 45655 77777777777666653
No 53
>KOG2482|consensus
Probab=94.10 E-value=0.11 Score=41.11 Aligned_cols=105 Identities=23% Similarity=0.351 Sum_probs=65.2
Q ss_pred CCcChhccCCHHHHHHHHHh--hCCCCc--------eeecccccccccccchhHHHHH--HHc--C-------------C
Q psy9954 12 FPHCAKAFSRLENLKIHQRS--HTGERP--------YSCTYEGCHKAFSNSSDRAKHQ--RTH--F-------------D 64 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~--h~~~~~--------~~C~~~~C~~~f~~~~~l~~H~--~~h--~-------------~ 64 (196)
|-.|.+.|+.+..|+.|||. |....| |.-.+.+-|++.. ....+. .+. . +
T Consensus 198 CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t---~~~~e~dret~~d~~E~D~~wsDw~ed~ 274 (423)
T KOG2482|consen 198 CLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWT---IVHSEDDRETNEDINETDDTWSDWNEDD 274 (423)
T ss_pred eeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccc---hhhhhhhhhhhccccccccchhhhhcCC
Confidence 44899999999999999986 543222 3322222233221 111111 110 0 1
Q ss_pred CCc--eeeccCccCccCCChHHHHHHhhhcCCC---------------------------CCCccccccccCCCCCCccc
Q psy9954 65 TRP--YKCMYKGCTKRYTDPSSLRKHAKNHNHD---------------------------HLTPAKMRKLNYAKPGDIVP 115 (196)
Q Consensus 65 ~~~--~~C~~~~C~~~f~~~~~l~~H~~~h~~~---------------------------~~~~C~~C~~~f~~~~~l~~ 115 (196)
..+ ..|-+ |....-....|..||+.-|.- +.-.|..|...|..+..|..
T Consensus 275 a~a~~v~CLf--C~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~ 352 (423)
T KOG2482|consen 275 AEALSVVCLF--CTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLI 352 (423)
T ss_pred CCccceEEEe--eccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhh
Confidence 122 69999 999888899999999865521 11347788888888888888
Q ss_pred cccccC
Q psy9954 116 SVRNVN 121 (196)
Q Consensus 116 H~~~~~ 121 (196)
||..+.
T Consensus 353 hm~e~k 358 (423)
T KOG2482|consen 353 HMVEDK 358 (423)
T ss_pred hccccc
Confidence 886443
No 54
>KOG2231|consensus
Probab=94.06 E-value=0.052 Score=46.92 Aligned_cols=96 Identities=22% Similarity=0.310 Sum_probs=61.2
Q ss_pred hccCCHHHHHHHHHh-hCCCCceeecc--------cccccccccchhHHHHHHHc-CCCC----ceeeccCccCccCCCh
Q psy9954 17 KAFSRLENLKIHQRS-HTGERPYSCTY--------EGCHKAFSNSSDRAKHQRTH-FDTR----PYKCMYKGCTKRYTDP 82 (196)
Q Consensus 17 k~f~~~~~L~~H~~~-h~~~~~~~C~~--------~~C~~~f~~~~~l~~H~~~h-~~~~----~~~C~~~~C~~~f~~~ 82 (196)
..|.....|+.|++. |.. +.|.. .-+.+ .-+...|..|+..- .+++ .-.|.+ |...|...
T Consensus 122 ~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k-~Yt~~el~~h~~~gd~d~~s~rGhp~C~~--C~~~fld~ 195 (669)
T KOG2231|consen 122 TEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERK-LYTRAELNLHLMFGDPDDESCRGHPLCKF--CHERFLDD 195 (669)
T ss_pred cchhHHHHHHHHHHHhhhh---hccccccccceeeeeeee-hehHHHHHHHHhcCCCccccccCCccchh--hhhhhccH
Confidence 344478899999964 543 33322 00233 33456778887642 1121 247877 99999999
Q ss_pred HHHHHHhhhcCCCCCCccccc------cccCCCCCCccccccccCC
Q psy9954 83 SSLRKHAKNHNHDHLTPAKMR------KLNYAKPGDIVPSVRNVNS 122 (196)
Q Consensus 83 ~~l~~H~~~h~~~~~~~C~~C------~~~f~~~~~l~~H~~~~~~ 122 (196)
..|.+|++.++ |-|..| +..|..-..|..|-+..|-
T Consensus 196 ~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~Hf 237 (669)
T KOG2231|consen 196 DELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHF 237 (669)
T ss_pred HHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcCc
Confidence 99999998755 334444 4566777788888887773
No 55
>KOG2893|consensus
Probab=93.90 E-value=0.033 Score=41.77 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=37.9
Q ss_pred CceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCCCCCCccccccccCCC
Q psy9954 66 RPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAKPGDIVPSVRNVNSS 123 (196)
Q Consensus 66 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~ 123 (196)
++| |=+ |++.|.+...|.+|++. +-|+|.+|.+...+--.|..|-..+|.+
T Consensus 10 kpw-cwy--cnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhke 60 (341)
T KOG2893|consen 10 KPW-CWY--CNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHKE 60 (341)
T ss_pred Cce-eee--cccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhhh
Confidence 443 556 88888888888888764 4588888888887777788777666643
No 56
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=92.82 E-value=0.049 Score=44.51 Aligned_cols=64 Identities=28% Similarity=0.558 Sum_probs=48.1
Q ss_pred ceeecccccccccccchhHHHHHH--HcCCC--CceeeccCccCccCCChHHHHHHhhhcCCCCCCcccc
Q psy9954 37 PYSCTYEGCHKAFSNSSDRAKHQR--THFDT--RPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKM 102 (196)
Q Consensus 37 ~~~C~~~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~ 102 (196)
++.|. .|...|.....|.+|.+ .|.++ +++.|++..|++.|.+...+..|...|.+...+.+..
T Consensus 289 ~~~~~--~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (467)
T COG5048 289 PIKSK--QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKL 356 (467)
T ss_pred CCCCc--cccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccccc
Confidence 56674 48888888888888888 68888 7888872238888888888888888888777666654
No 57
>KOG2893|consensus
Probab=92.56 E-value=0.048 Score=40.90 Aligned_cols=41 Identities=24% Similarity=0.510 Sum_probs=26.0
Q ss_pred CCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHH
Q psy9954 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKH 58 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H 58 (196)
|.+|++.|....-|.+|++. +-|+|-+ |-+...+--.|..|
T Consensus 13 cwycnrefddekiliqhqka----khfkchi--chkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKA----KHFKCHI--CHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhhh----ccceeee--ehhhhccCCCceee
Confidence 45777777777777777664 3377766 76655555555555
No 58
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.44 E-value=0.055 Score=42.81 Aligned_cols=106 Identities=21% Similarity=0.483 Sum_probs=65.4
Q ss_pred ccccCCCCCcChhccCCHHHHHHHHHhhCCCCceeeccccccc---------ccccchhHHHHHHHcCCC---C-ceeec
Q psy9954 5 FDFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHK---------AFSNSSDRAKHQRTHFDT---R-PYKCM 71 (196)
Q Consensus 5 ~~~~C~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~---------~f~~~~~l~~H~~~h~~~---~-~~~C~ 71 (196)
..|.|.+ ..|......+..|+.|.+.-++ .+-|.+ |-. ..-++..|..|...-..+ + .-.|.
T Consensus 150 L~F~CP~-skc~~~C~~~k~lk~H~K~~H~--~~~C~~--C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~ 224 (493)
T COG5236 150 LSFKCPK-SKCHRRCGSLKELKKHYKAQHG--FVLCSE--CIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCI 224 (493)
T ss_pred HHhcCCc-hhhhhhhhhHHHHHHHHHhhcC--cEEhHh--hhcCcccCccceeeeecccccccccCCccccCcCCCchhh
Confidence 3456652 3466666678889999887443 245533 421 233455666676542222 1 24788
Q ss_pred cCccCccCCChHHHHHHhhhcCCCCCCcccccccc-------CCCCCCccccccccC
Q psy9954 72 YKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLN-------YAKPGDIVPSVRNVN 121 (196)
Q Consensus 72 ~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~-------f~~~~~l~~H~~~~~ 121 (196)
+ |...|-+...|..|+|..|. .|.+|++. |++-.+|..|.+.-|
T Consensus 225 F--C~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h 275 (493)
T COG5236 225 F--CKIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH 275 (493)
T ss_pred h--ccceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc
Confidence 8 99999999999999986542 36666553 555566677766433
No 59
>KOG4124|consensus
Probab=92.39 E-value=0.052 Score=42.96 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=33.1
Q ss_pred CCceeeccCccCccCCChHHHHHHhhhcC-------------------CCCCCccccccccCCCCCCcccccc
Q psy9954 65 TRPYKCMYKGCTKRYTDPSSLRKHAKNHN-------------------HDHLTPAKMRKLNYAKPGDIVPSVR 118 (196)
Q Consensus 65 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~ 118 (196)
.++|+|+.+.|.+.+.....|+.|...-| ..|+|.|++|.+.++.-..|..|+-
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~~ 419 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHRT 419 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCceee
Confidence 35678877778888777777777754322 1345666666666655555554443
No 60
>KOG2231|consensus
Probab=92.39 E-value=0.39 Score=41.78 Aligned_cols=67 Identities=21% Similarity=0.447 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhhC-CCC----ceeecccccccccccchhHHHHHHHcCCCCceeecc----CccCccCCChHHHHHHhhh
Q psy9954 21 RLENLKIHQRSHT-GER----PYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMY----KGCTKRYTDPSSLRKHAKN 91 (196)
Q Consensus 21 ~~~~L~~H~~~h~-~~~----~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----~~C~~~f~~~~~l~~H~~~ 91 (196)
+...|..|++.-. +++ --.|.. |...|.....|.+|++.++ |.|.+ ++++.-|.....|..|.+.
T Consensus 161 t~~el~~h~~~gd~d~~s~rGhp~C~~--C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~ 234 (669)
T KOG2231|consen 161 TRAELNLHLMFGDPDDESCRGHPLCKF--CHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRK 234 (669)
T ss_pred hHHHHHHHHhcCCCccccccCCccchh--hhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhh
Confidence 4556777776522 222 135766 8889999999999988654 45555 1135567788899999887
Q ss_pred cC
Q psy9954 92 HN 93 (196)
Q Consensus 92 h~ 93 (196)
+|
T Consensus 235 ~H 236 (669)
T KOG2231|consen 235 GH 236 (669)
T ss_pred cC
Confidence 65
No 61
>KOG2785|consensus
Probab=92.26 E-value=0.26 Score=39.57 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=13.2
Q ss_pred ceeecccccccccccchhHHHHHH
Q psy9954 37 PYSCTYEGCHKAFSNSSDRAKHQR 60 (196)
Q Consensus 37 ~~~C~~~~C~~~f~~~~~l~~H~~ 60 (196)
++.|.+ |.+.|.....-..|+.
T Consensus 68 ~~~c~~--c~k~~~s~~a~~~hl~ 89 (390)
T KOG2785|consen 68 VVYCEA--CNKSFASPKAHENHLK 89 (390)
T ss_pred ceehHH--hhccccChhhHHHHHH
Confidence 456644 6666666666665554
No 62
>KOG4173|consensus
Probab=91.83 E-value=0.028 Score=41.11 Aligned_cols=80 Identities=15% Similarity=0.360 Sum_probs=50.0
Q ss_pred ceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHHHHHhhhcC----------CCCCCccc--ccc
Q psy9954 37 PYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN----------HDHLTPAK--MRK 104 (196)
Q Consensus 37 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~----------~~~~~~C~--~C~ 104 (196)
.|.|++-+|-+.|...+....|..+-++. .|.+ |.+.|.+...|..|+..-| +.-.|+|- .|.
T Consensus 79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~--C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt 153 (253)
T KOG4173|consen 79 AFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSF--CKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCT 153 (253)
T ss_pred cccccccchHHHHhhhhhHHHhhhhcccc---hhHH--HHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhh
Confidence 36676666777777666666666543333 6766 7777777777777764222 33446664 477
Q ss_pred ccCCCCCCccccccccC
Q psy9954 105 LNYAKPGDIVPSVRNVN 121 (196)
Q Consensus 105 ~~f~~~~~l~~H~~~~~ 121 (196)
..|.+...-..|+...|
T Consensus 154 ~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 154 EKFKTSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhhhhhHHHHhc
Confidence 77777766667766555
No 63
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.80 E-value=0.18 Score=25.78 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=18.3
Q ss_pred ceeeccCccCccCCChHHHHHHhhh
Q psy9954 67 PYKCMYKGCTKRYTDPSSLRKHAKN 91 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~~ 91 (196)
+|.|+. |++.|.+...+..|++.
T Consensus 3 ~~~C~~--C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKL--CNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccc--cCCccCCHHHHHHHHCh
Confidence 577877 88888888888888753
No 64
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.01 E-value=0.19 Score=25.73 Aligned_cols=23 Identities=22% Similarity=0.583 Sum_probs=16.3
Q ss_pred cccCCCCCcChhccCCHHHHHHHHHh
Q psy9954 6 DFLCSQFPHCAKAFSRLENLKIHQRS 31 (196)
Q Consensus 6 ~~~C~~C~~C~k~f~~~~~L~~H~~~ 31 (196)
+|.|. +|++.|.+...+..|++.
T Consensus 3 ~~~C~---~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCK---LCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEcc---ccCCccCCHHHHHHHHCh
Confidence 35555 788888878788777654
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.85 E-value=0.047 Score=43.15 Aligned_cols=81 Identities=17% Similarity=0.352 Sum_probs=57.1
Q ss_pred eeecccccccccccchhHHHHHHHcCCCCceeeccCcc---CccC------CChHHHHHHhhhcCCCC----CCcccccc
Q psy9954 38 YSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGC---TKRY------TDPSSLRKHAKNHNHDH----LTPAKMRK 104 (196)
Q Consensus 38 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C---~~~f------~~~~~l~~H~~~h~~~~----~~~C~~C~ 104 (196)
|.|+...|.........|+.|.+..++ .+-|.. | .+.| -+.+.|..|...-..+. -..|..|.
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~--~~~C~~--C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~ 227 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHG--FVLCSE--CIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCK 227 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcC--cEEhHh--hhcCcccCccceeeeecccccccccCCccccCcCCCchhhhcc
Confidence 788877788877778889999887443 245544 4 2222 34567777765433222 24699999
Q ss_pred ccCCCCCCccccccccCC
Q psy9954 105 LNYAKPGDIVPSVRNVNS 122 (196)
Q Consensus 105 ~~f~~~~~l~~H~~~~~~ 122 (196)
..|..-+.|..|++..|.
T Consensus 228 ~~FYdDDEL~~HcR~~HE 245 (493)
T COG5236 228 IYFYDDDELRRHCRLRHE 245 (493)
T ss_pred ceecChHHHHHHHHhhhh
Confidence 999999999999997774
No 66
>KOG4173|consensus
Probab=88.79 E-value=0.19 Score=36.97 Aligned_cols=81 Identities=26% Similarity=0.646 Sum_probs=62.9
Q ss_pred cccCCCCCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHH-c---------CCCCceeeccCcc
Q psy9954 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRT-H---------FDTRPYKCMYKGC 75 (196)
Q Consensus 6 ~~~C~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h---------~~~~~~~C~~~~C 75 (196)
.|.|. -.-|-..|........|-.+-++ -.|.. |.+.|.+.--|..|+.. | .|..-|.|-..+|
T Consensus 79 ~~~cq-vagc~~~~d~lD~~E~hY~~~h~---~sCs~--C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgC 152 (253)
T KOG4173|consen 79 AFACQ-VAGCCQVFDALDDYEHHYHTLHG---NSCSF--CKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGC 152 (253)
T ss_pred ccccc-ccchHHHHhhhhhHHHhhhhccc---chhHH--HHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhh
Confidence 35565 45688899888888888766443 36866 99999999999999764 3 2445699999999
Q ss_pred CccCCChHHHHHHhh-hc
Q psy9954 76 TKRYTDPSSLRKHAK-NH 92 (196)
Q Consensus 76 ~~~f~~~~~l~~H~~-~h 92 (196)
+..|.+....+.|+- +|
T Consensus 153 t~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 153 TEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhhhhhhHHHHhc
Confidence 999999999999975 44
No 67
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=86.89 E-value=0.7 Score=22.16 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=13.8
Q ss_pred CCCcChhccCCHHHHHHHHH
Q psy9954 11 QFPHCAKAFSRLENLKIHQR 30 (196)
Q Consensus 11 ~C~~C~k~f~~~~~L~~H~~ 30 (196)
+||+|++.+ ....+..|+.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 477888888 5567777765
No 68
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=83.99 E-value=0.41 Score=27.36 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=15.8
Q ss_pred CCCceeeccCccCccCCChHHHHHHhhh
Q psy9954 64 DTRPYKCMYKGCTKRYTDPSSLRKHAKN 91 (196)
Q Consensus 64 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 91 (196)
|+.-+.|+. |+..|.+..++.+|...
T Consensus 14 GE~~lrCPR--C~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 14 GEEFLRCPR--CGMVFRRRKDYIRHVNK 39 (65)
T ss_pred CceeeeCCc--hhHHHHHhHHHHHHhhH
Confidence 455566655 66666666666666544
No 69
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=83.75 E-value=3.1 Score=27.50 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=18.8
Q ss_pred eee----ccCccCccCCChHHHHHHhhhcCC
Q psy9954 68 YKC----MYKGCTKRYTDPSSLRKHAKNHNH 94 (196)
Q Consensus 68 ~~C----~~~~C~~~f~~~~~l~~H~~~h~~ 94 (196)
|.| .. |++.+.+...+.+|.+.+|+
T Consensus 81 ~~C~~~~~~--C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPH--CGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCC--CCcEeccHHHHHHHHHHhcC
Confidence 777 66 88888888888888776653
No 70
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=82.07 E-value=0.99 Score=22.93 Aligned_cols=7 Identities=29% Similarity=0.828 Sum_probs=3.3
Q ss_pred Cceeecc
Q psy9954 66 RPYKCMY 72 (196)
Q Consensus 66 ~~~~C~~ 72 (196)
.++.|+.
T Consensus 16 ~~~~CP~ 22 (33)
T cd00350 16 APWVCPV 22 (33)
T ss_pred CCCcCcC
Confidence 3445544
No 71
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=80.51 E-value=3.4 Score=27.28 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=21.4
Q ss_pred eee--cccccccccccchhHHHHHHHcCC
Q psy9954 38 YSC--TYEGCHKAFSNSSDRAKHQRTHFD 64 (196)
Q Consensus 38 ~~C--~~~~C~~~f~~~~~l~~H~~~h~~ 64 (196)
|.| ..+.|++.+.+...+.+|++.+++
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 788 223399999999999999987653
No 72
>KOG4377|consensus
Probab=80.43 E-value=2.4 Score=34.66 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=43.0
Q ss_pred ceeecccccccccccchhHHHHHHHcCCCC------------ceeeccCccCccCCChHHHHHHhhhcCCCC-------C
Q psy9954 37 PYSCTYEGCHKAFSNSSDRAKHQRTHFDTR------------PYKCMYKGCTKRYTDPSSLRKHAKNHNHDH-------L 97 (196)
Q Consensus 37 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~------------~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~-------~ 97 (196)
-|.|--+.|++.+..+.++.+|...|.... .|-|....|.+ .-++...|...|+... -
T Consensus 271 hyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrth 347 (480)
T KOG4377|consen 271 HYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTH 347 (480)
T ss_pred hhcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecce
Confidence 466665668877777888888877664321 36777666777 3344455655554321 2
Q ss_pred CccccccccCCCC
Q psy9954 98 TPAKMRKLNYAKP 110 (196)
Q Consensus 98 ~~C~~C~~~f~~~ 110 (196)
|.|..|+.++..+
T Consensus 348 fhC~r~gCTdtfK 360 (480)
T KOG4377|consen 348 FHCQRIGCTDTFK 360 (480)
T ss_pred eEEeccCCccccc
Confidence 5677777554444
No 73
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=79.90 E-value=1.4 Score=24.65 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=15.9
Q ss_pred CCcChhccCCH-----HHHHHHHH-hhC
Q psy9954 12 FPHCAKAFSRL-----ENLKIHQR-SHT 33 (196)
Q Consensus 12 C~~C~k~f~~~-----~~L~~H~~-~h~ 33 (196)
|..|++.+... ++|.+|++ .|.
T Consensus 21 C~~C~~~l~~~~~~gTs~L~rHl~~~h~ 48 (50)
T smart00614 21 CKYCGKKLSRSSKGGTSNLRRHLRRKHP 48 (50)
T ss_pred ecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence 55799888655 58888887 453
No 74
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=78.91 E-value=8.7 Score=27.26 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=8.4
Q ss_pred hccCCHHHHHHHHHhh
Q psy9954 17 KAFSRLENLKIHQRSH 32 (196)
Q Consensus 17 k~f~~~~~L~~H~~~h 32 (196)
..+....-|.+-.+.+
T Consensus 34 Ts~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 34 TSYRHSNCLDQFKKAY 49 (162)
T ss_pred CccchhHHHHHHHHHh
Confidence 5555555555554443
No 75
>KOG2186|consensus
Probab=77.28 E-value=2.5 Score=32.26 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=26.3
Q ss_pred CCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHH
Q psy9954 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRT 61 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 61 (196)
|.+||....-+ .|..|+-.-++ .-|.| ..|+..|.. .++..|..-
T Consensus 6 CnvCgEsvKKp-~vekH~srCrn-~~fSC--IDC~k~F~~-~sYknH~kC 50 (276)
T KOG2186|consen 6 CNVCGESVKKP-QVEKHMSRCRN-AYFSC--IDCGKTFER-VSYKNHTKC 50 (276)
T ss_pred hhhhhhhcccc-chHHHHHhccC-CeeEE--eeccccccc-chhhhhhhh
Confidence 33677666543 45557666554 44677 447777765 556666543
No 76
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.16 E-value=4.1 Score=27.16 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=8.5
Q ss_pred CCcChhccCCHHHHHH
Q psy9954 12 FPHCAKAFSRLENLKI 27 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~ 27 (196)
|++||-+.....+|.+
T Consensus 18 CpiCgLtLVss~HLAR 33 (112)
T TIGR00622 18 CPICGLTLILSTHLAR 33 (112)
T ss_pred CCcCCCEEeccchHHH
Confidence 4456655555555543
No 77
>KOG4377|consensus
Probab=73.35 E-value=2 Score=35.11 Aligned_cols=81 Identities=26% Similarity=0.460 Sum_probs=53.1
Q ss_pred cccCCCCCcChhccCCHHHHHHHHHhhCCC------------CceeecccccccccccchhHHHHHHHcCCC-------C
Q psy9954 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGE------------RPYSCTYEGCHKAFSNSSDRAKHQRTHFDT-------R 66 (196)
Q Consensus 6 ~~~C~~C~~C~k~f~~~~~L~~H~~~h~~~------------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-------~ 66 (196)
-|.|. =+.|+..+.++..+.+|...|... ..|.|....|.+ +.+++..|-..|+.. .
T Consensus 271 hyhcl-~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrt 346 (480)
T KOG4377|consen 271 HYHCL-NEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRT 346 (480)
T ss_pred hhccc-CccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecc
Confidence 35566 367998888899999998887542 237887777987 455677777666432 2
Q ss_pred ceeeccCccCccCCChHHHHHHhh
Q psy9954 67 PYKCMYKGCTKRYTDPSSLRKHAK 90 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~ 90 (196)
-|.|...+|-..|.....-..|.+
T Consensus 347 hfhC~r~gCTdtfK~~khk~yh~k 370 (480)
T KOG4377|consen 347 HFHCQRIGCTDTFKDSKHKPYHYK 370 (480)
T ss_pred eeEEeccCCccccccccccccccC
Confidence 488988555566664443333433
No 78
>KOG2186|consensus
Probab=72.46 E-value=3.1 Score=31.77 Aligned_cols=47 Identities=21% Similarity=0.543 Sum_probs=37.3
Q ss_pred ceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCChHHHHHHhh
Q psy9954 37 PYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAK 90 (196)
Q Consensus 37 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~ 90 (196)
.|.|.+ ||.... +..+.+|+....+ .-|.|.- |++.|.. ..+..|..
T Consensus 3 ~FtCnv--CgEsvK-Kp~vekH~srCrn-~~fSCID--C~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 3 FFTCNV--CGESVK-KPQVEKHMSRCRN-AYFSCID--CGKTFER-VSYKNHTK 49 (276)
T ss_pred EEehhh--hhhhcc-ccchHHHHHhccC-CeeEEee--ccccccc-chhhhhhh
Confidence 478966 998776 5668889987766 6899965 9999998 66778865
No 79
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=71.45 E-value=1.9 Score=24.70 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=21.5
Q ss_pred hCCCCceeecccccccccccchhHHHHHHH
Q psy9954 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQRT 61 (196)
Q Consensus 32 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 61 (196)
-.|+..+.|+ .|+..|....+..+|...
T Consensus 12 RDGE~~lrCP--RC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 12 RDGEEFLRCP--RCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred cCCceeeeCC--chhHHHHHhHHHHHHhhH
Confidence 4566778884 499888888888888764
No 80
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=69.28 E-value=3.2 Score=28.62 Aligned_cols=20 Identities=45% Similarity=0.780 Sum_probs=12.9
Q ss_pred cChhccCCHHHHHHHHHhhCCCC
Q psy9954 14 HCAKAFSRLENLKIHQRSHTGER 36 (196)
Q Consensus 14 ~C~k~f~~~~~L~~H~~~h~~~~ 36 (196)
+||+.|+. |++|++.|+|-.
T Consensus 77 ecGk~~k~---LkrHL~~~~glt 96 (132)
T PF05443_consen 77 ECGKKFKT---LKRHLRTHHGLT 96 (132)
T ss_dssp BT--EESB---HHHHHHHTT-S-
T ss_pred cCCcccch---HHHHHHHccCCC
Confidence 69999985 589999987744
No 81
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=69.22 E-value=4.2 Score=22.89 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=8.8
Q ss_pred CccccccccCCCC
Q psy9954 98 TPAKMRKLNYAKP 110 (196)
Q Consensus 98 ~~C~~C~~~f~~~ 110 (196)
|+|..|++.|...
T Consensus 2 y~C~~CgyiYd~~ 14 (50)
T cd00730 2 YECRICGYIYDPA 14 (50)
T ss_pred cCCCCCCeEECCC
Confidence 6677777777643
No 82
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=67.99 E-value=2.6 Score=20.22 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=9.2
Q ss_pred cCCCCCcChhccC
Q psy9954 8 LCSQFPHCAKAFS 20 (196)
Q Consensus 8 ~C~~C~~C~k~f~ 20 (196)
....|+.||..|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 3446888998885
No 83
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=67.97 E-value=6.8 Score=27.88 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=23.4
Q ss_pred CCCceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccC
Q psy9954 64 DTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNY 107 (196)
Q Consensus 64 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 107 (196)
...-|.|+. |+..|+...++. ..|.|+.||...
T Consensus 106 ~~~~Y~Cp~--c~~r~tf~eA~~---------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 106 NNMFFICPN--MCVRFTFNEAME---------LNFTCPRCGAML 138 (158)
T ss_pred CCCeEECCC--CCcEeeHHHHHH---------cCCcCCCCCCEe
Confidence 345588866 888888877774 258888888653
No 84
>KOG2785|consensus
Probab=67.68 E-value=7.7 Score=31.50 Aligned_cols=72 Identities=15% Similarity=0.321 Sum_probs=46.7
Q ss_pred CCCcChhccCCHHHHHHHHHhhCCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccC---ccCCChHHHHH
Q psy9954 11 QFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCT---KRYTDPSSLRK 87 (196)
Q Consensus 11 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~---~~f~~~~~l~~ 87 (196)
.|-.|++.+.+...-..||..++|- |. |+=.+ ......|..-+..-. ..-|.|.+ |+ +.|.+....+.
T Consensus 168 ~CLfC~~~~k~~e~~~~HM~~~Hgf--fI---PdreY-L~D~~GLl~YLgeKV-~~~~~CL~--CN~~~~~f~sleavr~ 238 (390)
T KOG2785|consen 168 DCLFCDKKSKSLEENLKHMFKEHGF--FI---PDREY-LTDEKGLLKYLGEKV-GIGFICLF--CNELGRPFSSLEAVRA 238 (390)
T ss_pred ceeecCCCcccHHHHHHHHhhccCC--cC---CchHh-hhchhHHHHHHHHHh-ccCceEEE--eccccCcccccHHHHH
Confidence 3668999999999999999987762 22 11111 122233333332211 23478887 88 99999999999
Q ss_pred Hhhh
Q psy9954 88 HAKN 91 (196)
Q Consensus 88 H~~~ 91 (196)
||..
T Consensus 239 HM~~ 242 (390)
T KOG2785|consen 239 HMRD 242 (390)
T ss_pred HHhh
Confidence 9964
No 85
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.66 E-value=1.2 Score=33.45 Aligned_cols=13 Identities=0% Similarity=-0.358 Sum_probs=8.5
Q ss_pred CccccccccCCCC
Q psy9954 98 TPAKMRKLNYAKP 110 (196)
Q Consensus 98 ~~C~~C~~~f~~~ 110 (196)
..|+.||+.+...
T Consensus 49 ~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 49 WVCPHCGYAAFEE 61 (214)
T ss_pred EECCCCCCccccc
Confidence 3477777776654
No 86
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=66.50 E-value=7.4 Score=29.95 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=9.9
Q ss_pred CCCccccccccCCCCCCcccccc
Q psy9954 96 HLTPAKMRKLNYAKPGDIVPSVR 118 (196)
Q Consensus 96 ~~~~C~~C~~~f~~~~~l~~H~~ 118 (196)
+++.|+.|++......+|....+
T Consensus 208 k~~PCPKCg~et~eTkdLSmStR 230 (314)
T PF06524_consen 208 KPIPCPKCGYETQETKDLSMSTR 230 (314)
T ss_pred CCCCCCCCCCcccccccceeeee
Confidence 34444444444444444443333
No 87
>KOG2482|consensus
Probab=65.71 E-value=19 Score=28.99 Aligned_cols=86 Identities=16% Similarity=0.297 Sum_probs=62.6
Q ss_pred ceeeccCccCccCCChHHHHHHhhhcCCC--CC-----------------------------------------------
Q psy9954 67 PYKCMYKGCTKRYTDPSSLRKHAKNHNHD--HL----------------------------------------------- 97 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~----------------------------------------------- 97 (196)
.+.|-. |.+.|..+..|+.||+..... .|
T Consensus 195 r~~CLy--CekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~e 272 (423)
T KOG2482|consen 195 RLRCLY--CEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNE 272 (423)
T ss_pred hheeee--eccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhc
Confidence 478988 999999999999999753211 11
Q ss_pred -------CccccccccCCCCCCccccccccCCCC-----------------------CCCCCcccccCCCcccccccchh
Q psy9954 98 -------TPAKMRKLNYAKPGDIVPSVRNVNSSV-----------------------PLNPDFTVFSCGEPNLLMESYEL 147 (196)
Q Consensus 98 -------~~C~~C~~~f~~~~~l~~H~~~~~~~~-----------------------~~~~~~~~~~c~~~~~~~~~~~~ 147 (196)
..|-.|...+.+...|..||+..|.-. .......|..|...|-....+..
T Consensus 273 d~a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~ 352 (423)
T KOG2482|consen 273 DDAEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLI 352 (423)
T ss_pred CCCCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhh
Confidence 268888888888889999998777321 01334567778888888888888
Q ss_pred heeeccc
Q psy9954 148 QTVTHDH 154 (196)
Q Consensus 148 h~~~~~~ 154 (196)
|++.+.+
T Consensus 353 hm~e~k~ 359 (423)
T KOG2482|consen 353 HMVEDKH 359 (423)
T ss_pred hcccccc
Confidence 8876554
No 88
>KOG4167|consensus
Probab=63.56 E-value=1.9 Score=37.82 Aligned_cols=18 Identities=28% Similarity=0.743 Sum_probs=8.7
Q ss_pred ChhccCCHHHHHHHHHhh
Q psy9954 15 CAKAFSRLENLKIHQRSH 32 (196)
Q Consensus 15 C~k~f~~~~~L~~H~~~h 32 (196)
|+|.|.....+..||++|
T Consensus 798 C~kvF~KiKSrNAHMK~H 815 (907)
T KOG4167|consen 798 CGKVFFKIKSRNAHMKTH 815 (907)
T ss_pred HHHHHHHHhhhhHHHHHH
Confidence 444444444444444444
No 89
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=62.76 E-value=1.5 Score=31.09 Aligned_cols=14 Identities=0% Similarity=-0.161 Sum_probs=8.3
Q ss_pred CccccccccCCCCC
Q psy9954 98 TPAKMRKLNYAKPG 111 (196)
Q Consensus 98 ~~C~~C~~~f~~~~ 111 (196)
++|+.||++|.+-.
T Consensus 29 ~~c~~c~~~f~~~e 42 (154)
T PRK00464 29 RECLACGKRFTTFE 42 (154)
T ss_pred eeccccCCcceEeE
Confidence 56666666665543
No 90
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.08 E-value=9.6 Score=25.44 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=42.3
Q ss_pred CceeecccccccccccchhHHHHHHHcCCCCce------------eeccCccCccCCChHHHHHHhhhcCCCCCCccccc
Q psy9954 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY------------KCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMR 103 (196)
Q Consensus 36 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C 103 (196)
-|..|++ ||-.......|.+-...--.-++| .|-- |...|........ ..-.....|.|..|
T Consensus 14 LP~~Cpi--CgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~--C~~~f~~~~~~~~--~~~~~~~~y~C~~C 87 (112)
T TIGR00622 14 LPVECPI--CGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFG--CQGPFPKPPVSPF--DELKDSHRYVCAVC 87 (112)
T ss_pred CCCcCCc--CCCEEeccchHHHhhhccCCCcccccccccccCCCCcccC--cCCCCCCcccccc--cccccccceeCCCC
Confidence 4788976 998888888877653210111111 2643 6766665421110 00122345777777
Q ss_pred cccCCCCCCcccccccc
Q psy9954 104 KLNYAKPGDIVPSVRNV 120 (196)
Q Consensus 104 ~~~f~~~~~l~~H~~~~ 120 (196)
...|-..=++-.|...|
T Consensus 88 ~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 88 KNVFCVDCDVFVHESLH 104 (112)
T ss_pred CCccccccchhhhhhcc
Confidence 77776655555555443
No 91
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=60.65 E-value=12 Score=20.08 Aligned_cols=22 Identities=36% Similarity=0.711 Sum_probs=9.4
Q ss_pred CceeeccCccCccCCCh----HHHHHHh
Q psy9954 66 RPYKCMYKGCTKRYTDP----SSLRKHA 89 (196)
Q Consensus 66 ~~~~C~~~~C~~~f~~~----~~l~~H~ 89 (196)
...+|.. |++.+... +.|.+|+
T Consensus 15 ~~a~C~~--C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 15 KKAKCKY--CGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp S-EEETT--TTEE-----SSTHHHHHHH
T ss_pred CeEEeCC--CCeEEeeCCCcHHHHHHhh
Confidence 3455555 65555543 5555555
No 92
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=59.03 E-value=8.6 Score=22.42 Aligned_cols=10 Identities=0% Similarity=-0.220 Sum_probs=5.2
Q ss_pred CCCccccccc
Q psy9954 96 HLTPAKMRKL 105 (196)
Q Consensus 96 ~~~~C~~C~~ 105 (196)
.+|.|+.||.
T Consensus 49 ~~Y~Cp~CGF 58 (61)
T COG2888 49 NPYRCPKCGF 58 (61)
T ss_pred CceECCCcCc
Confidence 3455555553
No 93
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=58.65 E-value=13 Score=19.89 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=15.2
Q ss_pred CCCcChhccCC--HHHHHHHHHhhC
Q psy9954 11 QFPHCAKAFSR--LENLKIHQRSHT 33 (196)
Q Consensus 11 ~C~~C~k~f~~--~~~L~~H~~~h~ 33 (196)
+|+.||..|.. ...-+.|.+.|.
T Consensus 15 ~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 15 TCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHh
Confidence 46679977764 455667777663
No 94
>PF15269 zf-C2H2_7: Zinc-finger
Probab=58.64 E-value=9.3 Score=20.85 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=18.7
Q ss_pred eeeccCccCccCCChHHHHHHhhh
Q psy9954 68 YKCMYKGCTKRYTDPSSLRKHAKN 91 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~ 91 (196)
|+|-. |..+...++.|..||+-
T Consensus 21 ykcfq--cpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQ--CPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeec--CCcccchHHHHHHHHHH
Confidence 78877 88888899999999874
No 95
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=58.59 E-value=12 Score=27.21 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=24.2
Q ss_pred CCceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCC
Q psy9954 65 TRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYA 108 (196)
Q Consensus 65 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 108 (196)
..-|.|+. |+..|+....+. ..|.|+.||....
T Consensus 115 ~~~Y~Cp~--C~~rytf~eA~~---------~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 115 NMFFFCPN--CHIRFTFDEAME---------YGFRCPQCGEMLE 147 (178)
T ss_pred CCEEECCC--CCcEEeHHHHhh---------cCCcCCCCCCCCe
Confidence 34588976 988888877763 3688999987543
No 96
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=56.94 E-value=11 Score=19.51 Aligned_cols=6 Identities=33% Similarity=1.054 Sum_probs=2.6
Q ss_pred cccccc
Q psy9954 45 CHKAFS 50 (196)
Q Consensus 45 C~~~f~ 50 (196)
|+..|.
T Consensus 8 C~~~f~ 13 (37)
T PF13719_consen 8 CQTRFR 13 (37)
T ss_pred CCceEE
Confidence 444443
No 97
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=56.70 E-value=18 Score=25.34 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=24.5
Q ss_pred CCCceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccC
Q psy9954 64 DTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNY 107 (196)
Q Consensus 64 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 107 (196)
...-|.|+. |+..|.....+..- . .+..|.|+.||...
T Consensus 96 ~~~~Y~Cp~--C~~~y~~~ea~~~~---d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPN--CQSKYTFLEANQLL---D-MDGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcC--CCCEeeHHHHHHhc---C-CCCcEECCCCCCEE
Confidence 345689977 99888865544320 1 23448899998764
No 98
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=55.11 E-value=6.5 Score=27.00 Aligned_cols=59 Identities=15% Similarity=0.365 Sum_probs=36.7
Q ss_pred CCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCC--hHHHHHHhhhcCCCCCCccccccccCCCC
Q psy9954 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTD--PSSLRKHAKNHNHDHLTPAKMRKLNYAKP 110 (196)
Q Consensus 33 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~--~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 110 (196)
...+.|+|.+ |..+......| ||-.| ||+..-. ...|-+|-.+ ...|+.|..+|++.
T Consensus 76 ~d~~lYeCnI--C~etS~ee~FL----------KPneC----CgY~iCn~Cya~LWK~~~~-----ypvCPvCkTSFKss 134 (140)
T PF05290_consen 76 LDPKLYECNI--CKETSAEERFL----------KPNEC----CGYSICNACYANLWKFCNL-----YPVCPVCKTSFKSS 134 (140)
T ss_pred cCCCceeccC--cccccchhhcC----------Ccccc----cchHHHHHHHHHHHHHccc-----CCCCCccccccccc
Confidence 3457799977 88766543332 46677 7754322 3455555443 35799999999876
Q ss_pred CC
Q psy9954 111 GD 112 (196)
Q Consensus 111 ~~ 112 (196)
..
T Consensus 135 ~~ 136 (140)
T PF05290_consen 135 SS 136 (140)
T ss_pred cc
Confidence 54
No 99
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.69 E-value=3.4 Score=30.99 Aligned_cols=13 Identities=15% Similarity=0.380 Sum_probs=9.9
Q ss_pred eeeccCccCccCCCh
Q psy9954 68 YKCMYKGCTKRYTDP 82 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~ 82 (196)
..|+. ||.+|...
T Consensus 49 ~vCP~--CgyA~~~~ 61 (214)
T PF09986_consen 49 WVCPH--CGYAAFEE 61 (214)
T ss_pred EECCC--CCCccccc
Confidence 68877 98887754
No 100
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=54.67 E-value=8.9 Score=32.28 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=25.4
Q ss_pred cccccCCCCCcChhccCCHHHHHHHHHh-hCC
Q psy9954 4 IFDFLCSQFPHCAKAFSRLENLKIHQRS-HTG 34 (196)
Q Consensus 4 ~~~~~C~~C~~C~k~f~~~~~L~~H~~~-h~~ 34 (196)
++...+..|+.|.+.|.....+..|+.. |.+
T Consensus 52 n~sWrFWiCp~CskkF~d~~~~~~H~~~eH~~ 83 (466)
T PF04780_consen 52 NKSWRFWICPRCSKKFSDAESCLSHMEQEHPA 83 (466)
T ss_pred cCceeEeeCCcccceeCCHHHHHHHHHHhhhh
Confidence 3455678899999999999999999875 654
No 101
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=54.38 E-value=6.7 Score=19.51 Aligned_cols=10 Identities=20% Similarity=0.836 Sum_probs=1.9
Q ss_pred CCCcChhccC
Q psy9954 11 QFPHCAKAFS 20 (196)
Q Consensus 11 ~C~~C~k~f~ 20 (196)
+|+.|+-.+.
T Consensus 4 ~Cp~C~se~~ 13 (30)
T PF08274_consen 4 KCPLCGSEYT 13 (30)
T ss_dssp --TTT-----
T ss_pred CCCCCCCcce
Confidence 3556665553
No 102
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=53.72 E-value=9.5 Score=25.31 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=19.3
Q ss_pred eeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCCCC
Q psy9954 68 YKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAKP 110 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 110 (196)
..|+. ||++|-..+ +.|..|+.||..|...
T Consensus 10 R~Cp~--CG~kFYDLn-----------k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPS--CGAKFYDLN-----------KDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCC--CcchhccCC-----------CCCccCCCCCCccCcc
Confidence 36755 777776532 3566677787777655
No 103
>KOG4124|consensus
Probab=53.52 E-value=1.9 Score=34.53 Aligned_cols=53 Identities=34% Similarity=0.861 Sum_probs=38.2
Q ss_pred CCceeecccccccccccchhHHHHHHH-cC------------------CCCceeeccCccCccCCChHHHHHHh
Q psy9954 35 ERPYSCTYEGCHKAFSNSSDRAKHQRT-HF------------------DTRPYKCMYKGCTKRYTDPSSLRKHA 89 (196)
Q Consensus 35 ~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~------------------~~~~~~C~~~~C~~~f~~~~~l~~H~ 89 (196)
.++|+|.++.|.+.++....|+.|... |. ..|+|.|++ |.+.++-...|+.|.
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i--~~~~~k~~~~l~~~~ 418 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEV--CSKRYKNLNGLKYHR 418 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChh--hhhhhccCCCCCcee
Confidence 357888888888888877777766542 21 247899988 988887766666654
No 104
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=53.06 E-value=10 Score=21.67 Aligned_cols=36 Identities=28% Similarity=0.655 Sum_probs=14.3
Q ss_pred CceeecccccccccccchhHHHHHHHcCCCCceeecc
Q psy9954 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMY 72 (196)
Q Consensus 36 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~ 72 (196)
.+..|+. +|+..-.....|..|+...-..++..|++
T Consensus 8 ~~v~C~~-~cc~~~i~r~~l~~H~~~~C~~~~v~C~~ 43 (60)
T PF02176_consen 8 RPVPCPN-GCCNEMIPRKELDDHLENECPKRPVPCPY 43 (60)
T ss_dssp SEEE-TT---S-BEEECCCHHHHHHTTSTTSEEE-SS
T ss_pred CEeeCCC-CCcccceeHHHHHHHHHccCCCCcEECCC
Confidence 3445542 23333223445666665444444555543
No 105
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=52.56 E-value=16 Score=18.83 Aligned_cols=6 Identities=17% Similarity=0.955 Sum_probs=2.6
Q ss_pred cccccc
Q psy9954 45 CHKAFS 50 (196)
Q Consensus 45 C~~~f~ 50 (196)
|+..|.
T Consensus 8 C~~~y~ 13 (36)
T PF13717_consen 8 CQAKYE 13 (36)
T ss_pred CCCEEe
Confidence 444443
No 106
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=52.08 E-value=8.2 Score=26.55 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=16.9
Q ss_pred cCCCCCcChhccCCHHHHHHHHHhhCCCC
Q psy9954 8 LCSQFPHCAKAFSRLENLKIHQRSHTGER 36 (196)
Q Consensus 8 ~C~~C~~C~k~f~~~~~L~~H~~~h~~~~ 36 (196)
.|. .+|+.|+ .|++|+.+|.+--
T Consensus 78 icL---EDGkkfK---SLKRHL~t~~gmT 100 (148)
T COG4957 78 ICL---EDGKKFK---SLKRHLTTHYGLT 100 (148)
T ss_pred EEe---ccCcchH---HHHHHHhcccCCC
Confidence 466 4888886 5888888887644
No 107
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=50.95 E-value=19 Score=25.65 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=26.6
Q ss_pred hhCCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCC
Q psy9954 31 SHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYT 80 (196)
Q Consensus 31 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~ 80 (196)
......-|.|+ .|+..|+....+. .-|.|+. ||....
T Consensus 103 ~e~~~~~Y~Cp--~c~~r~tf~eA~~---------~~F~Cp~--Cg~~L~ 139 (158)
T TIGR00373 103 FETNNMFFICP--NMCVRFTFNEAME---------LNFTCPR--CGAMLD 139 (158)
T ss_pred hccCCCeEECC--CCCcEeeHHHHHH---------cCCcCCC--CCCEee
Confidence 34455679994 4999888777764 2699977 987754
No 108
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=50.31 E-value=13 Score=21.69 Aligned_cols=8 Identities=0% Similarity=-0.367 Sum_probs=3.8
Q ss_pred CCcccccc
Q psy9954 97 LTPAKMRK 104 (196)
Q Consensus 97 ~~~C~~C~ 104 (196)
+|.|+.||
T Consensus 48 ~Y~CP~CG 55 (59)
T PRK14890 48 PYTCPKCG 55 (59)
T ss_pred ceECCCCC
Confidence 44444444
No 109
>KOG4167|consensus
Probab=49.91 E-value=3.3 Score=36.50 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.4
Q ss_pred ceeeccCccCccCCChHHHHHHhhhcCC
Q psy9954 67 PYKCMYKGCTKRYTDPSSLRKHAKNHNH 94 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 94 (196)
.|.|.. |+|.|--..+++.||++|.-
T Consensus 792 iFpCre--C~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 792 IFPCRE--CGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred eeehHH--HHHHHHHHhhhhHHHHHHHH
Confidence 599977 99999999999999999853
No 110
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=49.61 E-value=2.7 Score=25.69 Aligned_cols=20 Identities=0% Similarity=0.042 Sum_probs=10.9
Q ss_pred CCCCccc--cccccCCCCCCcc
Q psy9954 95 DHLTPAK--MRKLNYAKPGDIV 114 (196)
Q Consensus 95 ~~~~~C~--~C~~~f~~~~~l~ 114 (196)
+..+.|. .||.+|..-..+.
T Consensus 25 ~~Y~qC~N~eCg~tF~t~es~s 46 (72)
T PRK09678 25 ERYHQCQNVNCSATFITYESVQ 46 (72)
T ss_pred eeeeecCCCCCCCEEEEEEEEE
Confidence 4455665 6666665544333
No 111
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=43.58 E-value=16 Score=27.52 Aligned_cols=31 Identities=29% Similarity=0.653 Sum_probs=22.3
Q ss_pred CCCceeeccCccCccCCChHHHHHHhhhcCCCC
Q psy9954 64 DTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDH 96 (196)
Q Consensus 64 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~ 96 (196)
.+..|.|.. |+|.|.-..-..+|+...|.++
T Consensus 74 ~~~K~~C~l--c~KlFkg~eFV~KHI~nKH~e~ 104 (214)
T PF04959_consen 74 DEDKWRCPL--CGKLFKGPEFVRKHIFNKHPEK 104 (214)
T ss_dssp SSEEEEE-S--SS-EESSHHHHHHHHHHH-HHH
T ss_pred cCCEECCCC--CCcccCChHHHHHHHhhcCHHH
Confidence 345699977 9999999999999988766543
No 112
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=43.26 E-value=22 Score=25.85 Aligned_cols=36 Identities=17% Similarity=0.493 Sum_probs=25.6
Q ss_pred CCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCCC
Q psy9954 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTD 81 (196)
Q Consensus 33 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 81 (196)
....-|.|+ .|+..|.....+. .-|.|+. ||.....
T Consensus 113 ~~~~~Y~Cp--~C~~rytf~eA~~---------~~F~Cp~--Cg~~L~~ 148 (178)
T PRK06266 113 ENNMFFFCP--NCHIRFTFDEAME---------YGFRCPQ--CGEMLEE 148 (178)
T ss_pred cCCCEEECC--CCCcEEeHHHHhh---------cCCcCCC--CCCCCee
Confidence 344579995 4999888766653 3699987 9887554
No 113
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=42.85 E-value=61 Score=22.64 Aligned_cols=40 Identities=15% Similarity=0.467 Sum_probs=24.9
Q ss_pred CCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCccCC
Q psy9954 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYT 80 (196)
Q Consensus 33 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~ 80 (196)
....-|.|+ .|+..|.....+.. ... +..|.|+. |+....
T Consensus 95 ~~~~~Y~Cp--~C~~~y~~~ea~~~---~d~-~~~f~Cp~--Cg~~l~ 134 (147)
T smart00531 95 TNNAYYKCP--NCQSKYTFLEANQL---LDM-DGTFTCPR--CGEELE 134 (147)
T ss_pred cCCcEEECc--CCCCEeeHHHHHHh---cCC-CCcEECCC--CCCEEE
Confidence 344579995 59998885443321 111 34499977 987754
No 114
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=42.57 E-value=9.5 Score=20.23 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=9.8
Q ss_pred CceeecccccccccccchhHH
Q psy9954 36 RPYSCTYEGCHKAFSNSSDRA 56 (196)
Q Consensus 36 ~~~~C~~~~C~~~f~~~~~l~ 56 (196)
..+.| +.|+-.+.....|.
T Consensus 18 ~id~C--~~C~G~W~d~~el~ 36 (41)
T PF13453_consen 18 EIDVC--PSCGGIWFDAGELE 36 (41)
T ss_pred EEEEC--CCCCeEEccHHHHH
Confidence 34556 33665555555544
No 115
>PHA00626 hypothetical protein
Probab=40.43 E-value=13 Score=21.35 Aligned_cols=15 Identities=13% Similarity=-0.221 Sum_probs=11.3
Q ss_pred CCCCccccccccCCC
Q psy9954 95 DHLTPAKMRKLNYAK 109 (196)
Q Consensus 95 ~~~~~C~~C~~~f~~ 109 (196)
...|+|..|++.|..
T Consensus 21 snrYkCkdCGY~ft~ 35 (59)
T PHA00626 21 SDDYVCCDCGYNDSK 35 (59)
T ss_pred CcceEcCCCCCeech
Confidence 356888888888754
No 116
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=39.60 E-value=4.4 Score=22.36 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=9.5
Q ss_pred ceeecccccccccccc
Q psy9954 37 PYSCTYEGCHKAFSNS 52 (196)
Q Consensus 37 ~~~C~~~~C~~~f~~~ 52 (196)
-++|.-++||..|...
T Consensus 25 Y~qC~N~~Cg~tfv~~ 40 (47)
T PF04606_consen 25 YCQCTNPECGHTFVAN 40 (47)
T ss_pred EEEECCCcCCCEEEEE
Confidence 3566655677666543
No 117
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=39.48 E-value=11 Score=21.28 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=5.8
Q ss_pred CCcChhccCCHH
Q psy9954 12 FPHCAKAFSRLE 23 (196)
Q Consensus 12 C~~C~k~f~~~~ 23 (196)
||+|++.|....
T Consensus 23 CPlC~r~l~~e~ 34 (54)
T PF04423_consen 23 CPLCGRPLDEEH 34 (54)
T ss_dssp -TTT--EE-HHH
T ss_pred CCCCCCCCCHHH
Confidence 779999987543
No 118
>KOG2593|consensus
Probab=39.11 E-value=25 Score=29.17 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=27.3
Q ss_pred CCCceeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccC
Q psy9954 64 DTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNY 107 (196)
Q Consensus 64 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 107 (196)
....|.|+. |.+.|.....+.- .-...-.|.|..|+-..
T Consensus 125 ~~~~Y~Cp~--C~kkyt~Lea~~L---~~~~~~~F~C~~C~gel 163 (436)
T KOG2593|consen 125 NVAGYVCPN--CQKKYTSLEALQL---LDNETGEFHCENCGGEL 163 (436)
T ss_pred ccccccCCc--cccchhhhHHHHh---hcccCceEEEecCCCch
Confidence 345699988 9999988777643 22234578899997643
No 119
>KOG0717|consensus
Probab=38.18 E-value=17 Score=30.48 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.2
Q ss_pred CCcChhccCCHHHHHHHHHh
Q psy9954 12 FPHCAKAFSRLENLKIHQRS 31 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~ 31 (196)
|.+|+|.|.+...|..|..+
T Consensus 295 C~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 295 CVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred EeeccccccchHHHHhhHHH
Confidence 55899999999999998754
No 120
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=37.17 E-value=21 Score=25.66 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=6.8
Q ss_pred CCCceeeccCccC
Q psy9954 64 DTRPYKCMYKGCT 76 (196)
Q Consensus 64 ~~~~~~C~~~~C~ 76 (196)
++.|..||. |+
T Consensus 146 ge~P~~CPi--Cg 156 (166)
T COG1592 146 GEAPEVCPI--CG 156 (166)
T ss_pred CCCCCcCCC--CC
Confidence 455667766 76
No 121
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.66 E-value=33 Score=23.45 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=18.4
Q ss_pred eeeccCccCccCCChHHHHHHhhhcCCCCCCccccccccCCCC
Q psy9954 68 YKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAKP 110 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 110 (196)
..|+. |+++|-.. ++.+..|+.||..|...
T Consensus 10 r~Cp~--cg~kFYDL-----------nk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPN--TGSKFYDL-----------NRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCC--cCcccccc-----------CCCCccCCCcCCccCcc
Confidence 36755 77776552 23566677777776544
No 122
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.05 E-value=16 Score=19.65 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=9.6
Q ss_pred CCcChhccCCHHHH
Q psy9954 12 FPHCAKAFSRLENL 25 (196)
Q Consensus 12 C~~C~k~f~~~~~L 25 (196)
|++||+.|.-....
T Consensus 11 C~~C~rpf~WRKKW 24 (42)
T PF10013_consen 11 CPVCGRPFTWRKKW 24 (42)
T ss_pred CcccCCcchHHHHH
Confidence 66888888765443
No 123
>PF12907 zf-met2: Zinc-binding
Probab=33.23 E-value=31 Score=18.43 Aligned_cols=9 Identities=33% Similarity=0.302 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q psy9954 22 LENLKIHQR 30 (196)
Q Consensus 22 ~~~L~~H~~ 30 (196)
...|..|..
T Consensus 17 ~~~L~eH~e 25 (40)
T PF12907_consen 17 EPQLKEHAE 25 (40)
T ss_pred HHHHHHHHH
Confidence 344555544
No 124
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=33.01 E-value=14 Score=27.84 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=21.1
Q ss_pred CCceeecccccccccccchhHHHHHHHcCCC
Q psy9954 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT 65 (196)
Q Consensus 35 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~ 65 (196)
+..|.|.. |+|.|.-...+.+|+..-+.+
T Consensus 75 ~~K~~C~l--c~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 75 EDKWRCPL--CGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp SEEEEE-S--SS-EESSHHHHHHHHHHH-HH
T ss_pred CCEECCCC--CCcccCChHHHHHHHhhcCHH
Confidence 34599955 999999999999998864443
No 125
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=32.88 E-value=27 Score=19.57 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=4.9
Q ss_pred eeeccCccCccC
Q psy9954 68 YKCMYKGCTKRY 79 (196)
Q Consensus 68 ~~C~~~~C~~~f 79 (196)
|.|.. |++.|
T Consensus 7 Y~C~~--Cg~~~ 16 (49)
T COG1996 7 YKCAR--CGREV 16 (49)
T ss_pred EEhhh--cCCee
Confidence 45544 55544
No 126
>KOG3002|consensus
Probab=31.41 E-value=84 Score=25.00 Aligned_cols=76 Identities=20% Similarity=0.377 Sum_probs=39.5
Q ss_pred CCCcChhccCCHHHHHHHHHhhCCCCceeecc--cccccccccchhHHHHHHHcCCCCceeeccC--ccCccCCChHHHH
Q psy9954 11 QFPHCAKAFSRLENLKIHQRSHTGERPYSCTY--EGCHKAFSNSSDRAKHQRTHFDTRPYKCMYK--GCTKRYTDPSSLR 86 (196)
Q Consensus 11 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~l~ 86 (196)
+||.|...+.....|. |..-.....+.|+. -+|.+.|..... ..|.+.-.- .||.|+.+ .|... .....|.
T Consensus 82 ~CP~Cr~~~g~~R~~a--mEkV~e~~~vpC~~~~~GC~~~~~Y~~~-~~HE~~C~f-~~~~CP~p~~~C~~~-G~~~~l~ 156 (299)
T KOG3002|consen 82 KCPTCRLPIGNIRCRA--MEKVAEAVLVPCKNAKLGCTKSFPYGEK-SKHEKVCEF-RPCSCPVPGAECKYT-GSYKDLY 156 (299)
T ss_pred cCCccccccccHHHHH--HHHHHHhceecccccccCCceeeccccc-ccccccccc-CCcCCCCCcccCCcc-CcHHHHH
Confidence 4667777777554432 22222223445542 246666665555 345444332 56777765 55443 4456677
Q ss_pred HHhhh
Q psy9954 87 KHAKN 91 (196)
Q Consensus 87 ~H~~~ 91 (196)
.|.+.
T Consensus 157 ~H~~~ 161 (299)
T KOG3002|consen 157 AHLND 161 (299)
T ss_pred HHHHh
Confidence 77653
No 127
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=31.24 E-value=15 Score=19.63 Aligned_cols=8 Identities=25% Similarity=0.883 Sum_probs=6.1
Q ss_pred CCcChhcc
Q psy9954 12 FPHCAKAF 19 (196)
Q Consensus 12 C~~C~k~f 19 (196)
|++||..|
T Consensus 32 CpYCg~~y 39 (40)
T PF10276_consen 32 CPYCGTRY 39 (40)
T ss_dssp ETTTTEEE
T ss_pred CCCCCCEE
Confidence 56898876
No 128
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.94 E-value=18 Score=21.22 Aligned_cols=10 Identities=20% Similarity=0.670 Sum_probs=7.6
Q ss_pred CCCcChhccC
Q psy9954 11 QFPHCAKAFS 20 (196)
Q Consensus 11 ~C~~C~k~f~ 20 (196)
.||+|+..|+
T Consensus 50 ~CPYC~t~y~ 59 (62)
T COG4391 50 VCPYCSTRYR 59 (62)
T ss_pred ecCccccEEE
Confidence 3888888774
No 129
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=30.32 E-value=47 Score=19.15 Aligned_cols=6 Identities=33% Similarity=1.027 Sum_probs=1.8
Q ss_pred cccccc
Q psy9954 45 CHKAFS 50 (196)
Q Consensus 45 C~~~f~ 50 (196)
|+..|.
T Consensus 30 C~H~fe 35 (57)
T PF11789_consen 30 CGHTFE 35 (57)
T ss_dssp S--EEE
T ss_pred CCCeec
Confidence 444443
No 130
>KOG2593|consensus
Probab=29.65 E-value=85 Score=26.23 Aligned_cols=39 Identities=21% Similarity=0.473 Sum_probs=25.2
Q ss_pred CCCCceeecccccccccccchhHHHHHHHcCCCCceeeccCccCcc
Q psy9954 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKR 78 (196)
Q Consensus 33 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~ 78 (196)
....-|.|+. |.+.|..-..+. ..-...-.|.|.. |+--
T Consensus 124 t~~~~Y~Cp~--C~kkyt~Lea~~---L~~~~~~~F~C~~--C~ge 162 (436)
T KOG2593|consen 124 TNVAGYVCPN--CQKKYTSLEALQ---LLDNETGEFHCEN--CGGE 162 (436)
T ss_pred cccccccCCc--cccchhhhHHHH---hhcccCceEEEec--CCCc
Confidence 4455699965 999987644433 3334445699988 8543
No 131
>KOG2071|consensus
Probab=29.58 E-value=30 Score=29.97 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.0
Q ss_pred CCcChhccCCHHHHHHHHHhhC
Q psy9954 12 FPHCAKAFSRLENLKIHQRSHT 33 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~h~ 33 (196)
|..||..|........||..|.
T Consensus 421 C~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 421 CKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred hcccccccccchhhhhHhhhhh
Confidence 4589999999988888877664
No 132
>KOG1701|consensus
Probab=29.47 E-value=11 Score=31.14 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=42.8
Q ss_pred ceeeccCccCcc-----CCChHHHHHH-hhhcCCCCCCccccccccCCCCCCccccccccCCCCCCCCCcccccCCCccc
Q psy9954 67 PYKCMYKGCTKR-----YTDPSSLRKH-AKNHNHDHLTPAKMRKLNYAKPGDIVPSVRNVNSSVPLNPDFTVFSCGEPNL 140 (196)
Q Consensus 67 ~~~C~~~~C~~~-----f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~c~~~~~ 140 (196)
-|.|-. |.+. |.--+.-+.| +.-.|.+-.-+|.+|+.-..-...-..-+|++.-++. --+.||.|.++..
T Consensus 360 CF~Cv~--C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~--fHv~CY~CEDCg~ 435 (468)
T KOG1701|consen 360 CFTCVV--CARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKDETVRVVAMDRD--FHVNCYKCEDCGL 435 (468)
T ss_pred ceEEEE--eccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCCcceEEEEEcccc--ccccceehhhcCc
Confidence 377766 7554 3332222222 2222344456799999888777776667776654443 2457788877776
Q ss_pred ccc
Q psy9954 141 LME 143 (196)
Q Consensus 141 ~~~ 143 (196)
..+
T Consensus 436 ~LS 438 (468)
T KOG1701|consen 436 LLS 438 (468)
T ss_pred ccc
Confidence 544
No 133
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=29.10 E-value=42 Score=18.56 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=6.0
Q ss_pred CccccccccCCC
Q psy9954 98 TPAKMRKLNYAK 109 (196)
Q Consensus 98 ~~C~~C~~~f~~ 109 (196)
|+|..|+..|..
T Consensus 2 y~C~~CgyvYd~ 13 (47)
T PF00301_consen 2 YQCPVCGYVYDP 13 (47)
T ss_dssp EEETTTSBEEET
T ss_pred cCCCCCCEEEcC
Confidence 445555555433
No 134
>COG1773 Rubredoxin [Energy production and conversion]
Probab=29.05 E-value=20 Score=20.66 Aligned_cols=15 Identities=7% Similarity=-0.099 Sum_probs=12.1
Q ss_pred CCccccccccCCCCC
Q psy9954 97 LTPAKMRKLNYAKPG 111 (196)
Q Consensus 97 ~~~C~~C~~~f~~~~ 111 (196)
.|+|.+||..|.-..
T Consensus 3 ~~~C~~CG~vYd~e~ 17 (55)
T COG1773 3 RWRCSVCGYVYDPEK 17 (55)
T ss_pred ceEecCCceEecccc
Confidence 688999999986653
No 135
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=28.34 E-value=32 Score=20.32 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=3.0
Q ss_pred CCcChhccC
Q psy9954 12 FPHCAKAFS 20 (196)
Q Consensus 12 C~~C~k~f~ 20 (196)
|..|++.|.
T Consensus 12 C~~C~~~F~ 20 (69)
T PF01363_consen 12 CMICGKKFS 20 (69)
T ss_dssp -TTT--B-B
T ss_pred CcCcCCcCC
Confidence 446777773
No 136
>PRK04023 DNA polymerase II large subunit; Validated
Probab=27.05 E-value=65 Score=30.12 Aligned_cols=11 Identities=0% Similarity=-0.218 Sum_probs=5.5
Q ss_pred CccccccccCC
Q psy9954 98 TPAKMRKLNYA 108 (196)
Q Consensus 98 ~~C~~C~~~f~ 108 (196)
+.|+.|+..-.
T Consensus 664 y~CPKCG~El~ 674 (1121)
T PRK04023 664 DECEKCGREPT 674 (1121)
T ss_pred CcCCCCCCCCC
Confidence 44555555433
No 137
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.04 E-value=48 Score=19.56 Aligned_cols=14 Identities=21% Similarity=0.524 Sum_probs=7.4
Q ss_pred CCceeeccCccCccCC
Q psy9954 65 TRPYKCMYKGCTKRYT 80 (196)
Q Consensus 65 ~~~~~C~~~~C~~~f~ 80 (196)
.+.|.|+. ||..+.
T Consensus 44 ~r~~~C~~--Cg~~~~ 57 (69)
T PF07282_consen 44 GRVFTCPN--CGFEMD 57 (69)
T ss_pred cceEEcCC--CCCEEC
Confidence 34566655 665543
No 138
>KOG3408|consensus
Probab=25.72 E-value=46 Score=22.56 Aligned_cols=26 Identities=23% Similarity=0.648 Sum_probs=22.0
Q ss_pred CCceeeccCccCccCCChHHHHHHhhhc
Q psy9954 65 TRPYKCMYKGCTKRYTDPSSLRKHAKNH 92 (196)
Q Consensus 65 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h 92 (196)
--.|-|-. |.+-|.+...|..|.++.
T Consensus 55 ~GqfyCi~--CaRyFi~~~~l~~H~ktK 80 (129)
T KOG3408|consen 55 GGQFYCIE--CARYFIDAKALKTHFKTK 80 (129)
T ss_pred Cceeehhh--hhhhhcchHHHHHHHhcc
Confidence 34589977 999999999999998864
No 139
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=25.64 E-value=50 Score=21.07 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=11.7
Q ss_pred cCCCCCcChhccCCHHHHH
Q psy9954 8 LCSQFPHCAKAFSRLENLK 26 (196)
Q Consensus 8 ~C~~C~~C~k~f~~~~~L~ 26 (196)
.|..|+.||..|-+...+.
T Consensus 34 Pa~~C~~CGe~y~~dev~~ 52 (89)
T TIGR03829 34 PSISCSHCGMEYQDDTTVK 52 (89)
T ss_pred CcccccCCCcEeecHHHHH
Confidence 4555666777776665543
No 140
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=25.37 E-value=35 Score=15.96 Aligned_cols=6 Identities=33% Similarity=1.098 Sum_probs=2.7
Q ss_pred ceeecc
Q psy9954 67 PYKCMY 72 (196)
Q Consensus 67 ~~~C~~ 72 (196)
.|.|+.
T Consensus 16 ~f~CPn 21 (24)
T PF07754_consen 16 PFPCPN 21 (24)
T ss_pred eEeCCC
Confidence 355543
No 141
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.89 E-value=30 Score=18.47 Aligned_cols=12 Identities=25% Similarity=1.041 Sum_probs=5.9
Q ss_pred cccCCCCCcChhccC
Q psy9954 6 DFLCSQFPHCAKAFS 20 (196)
Q Consensus 6 ~~~C~~C~~C~k~f~ 20 (196)
.|.|. .||..|.
T Consensus 5 ey~C~---~Cg~~fe 16 (42)
T PF09723_consen 5 EYRCE---ECGHEFE 16 (42)
T ss_pred EEEeC---CCCCEEE
Confidence 44555 2555553
No 142
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=24.75 E-value=37 Score=19.03 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=5.5
Q ss_pred ceeeccccccccc
Q psy9954 37 PYSCTYEGCHKAF 49 (196)
Q Consensus 37 ~~~C~~~~C~~~f 49 (196)
.+.|. .||..+
T Consensus 37 r~~C~--~Cgyt~ 47 (50)
T PRK00432 37 RWHCG--KCGYTE 47 (50)
T ss_pred cEECC--CcCCEE
Confidence 45663 366543
No 143
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.59 E-value=49 Score=23.26 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=9.0
Q ss_pred CCCCccccccccCCCC
Q psy9954 95 DHLTPAKMRKLNYAKP 110 (196)
Q Consensus 95 ~~~~~C~~C~~~f~~~ 110 (196)
.....|+.|+....++
T Consensus 128 ~~l~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 128 ERLPPCPKCGHTEFTR 143 (146)
T ss_pred CcCCCCCCCCCCeeee
Confidence 3455677776654443
No 144
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=24.41 E-value=14 Score=23.99 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=5.1
Q ss_pred CccccccccC
Q psy9954 98 TPAKMRKLNY 107 (196)
Q Consensus 98 ~~C~~C~~~f 107 (196)
..|..||..|
T Consensus 47 ~~Cg~CGls~ 56 (104)
T COG4888 47 AVCGNCGLSF 56 (104)
T ss_pred EEcccCcceE
Confidence 4455555444
No 145
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.40 E-value=39 Score=22.41 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=7.8
Q ss_pred CceeeccCccCccC
Q psy9954 66 RPYKCMYKGCTKRY 79 (196)
Q Consensus 66 ~~~~C~~~~C~~~f 79 (196)
.|..|+. ||+.|
T Consensus 25 dPiVsPy--tG~s~ 36 (129)
T COG4530 25 DPIVSPY--TGKSY 36 (129)
T ss_pred CccccCc--ccccc
Confidence 4566666 77776
No 146
>KOG4727|consensus
Probab=23.94 E-value=16 Score=26.33 Aligned_cols=22 Identities=0% Similarity=-0.146 Sum_probs=19.5
Q ss_pred CCccccccccCCCCCCcccccc
Q psy9954 97 LTPAKMRKLNYAKPGDIVPSVR 118 (196)
Q Consensus 97 ~~~C~~C~~~f~~~~~l~~H~~ 118 (196)
-|.|.+|+.++...-++..|+-
T Consensus 75 GyyCdVCdcvvKDSinflDHiN 96 (193)
T KOG4727|consen 75 GYYCDVCDCVVKDSINFLDHIN 96 (193)
T ss_pred ceeeeecceeehhhHHHHHHhc
Confidence 4889999999999999988884
No 147
>KOG3408|consensus
Probab=23.92 E-value=53 Score=22.26 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=10.4
Q ss_pred cChhccCCHHHHHHHHHh
Q psy9954 14 HCAKAFSRLENLKIHQRS 31 (196)
Q Consensus 14 ~C~k~f~~~~~L~~H~~~ 31 (196)
.|.+-|.+...|..|.++
T Consensus 62 ~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 62 ECARYFIDAKALKTHFKT 79 (129)
T ss_pred hhhhhhcchHHHHHHHhc
Confidence 366666666666666543
No 148
>KOG1842|consensus
Probab=23.26 E-value=52 Score=27.62 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.6
Q ss_pred CCcChhccCCHHHHHHHHHh-hCC
Q psy9954 12 FPHCAKAFSRLENLKIHQRS-HTG 34 (196)
Q Consensus 12 C~~C~k~f~~~~~L~~H~~~-h~~ 34 (196)
||+|.+-|.+.+.|..|... |.+
T Consensus 18 CPiC~~dl~~~~~L~~H~d~eH~~ 41 (505)
T KOG1842|consen 18 CPICLLDLPNLSALNDHLDVEHFE 41 (505)
T ss_pred CchHhhhhhhHHHHHHHHhhhccc
Confidence 56999999999999999876 544
No 149
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=22.46 E-value=58 Score=18.74 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=8.5
Q ss_pred CCCCceeeccccccccc
Q psy9954 33 TGERPYSCTYEGCHKAF 49 (196)
Q Consensus 33 ~~~~~~~C~~~~C~~~f 49 (196)
.+...|.|+ .||..+
T Consensus 10 ~~~v~~~Cp--~cGipt 24 (55)
T PF13824_consen 10 PAHVNFECP--DCGIPT 24 (55)
T ss_pred ccccCCcCC--CCCCcC
Confidence 344567774 377644
No 150
>KOG2932|consensus
Probab=22.40 E-value=94 Score=24.86 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=20.6
Q ss_pred CCCCCcccc---ccccCCCCCCccccccccCC
Q psy9954 94 HDHLTPAKM---RKLNYAKPGDIVPSVRNVNS 122 (196)
Q Consensus 94 ~~~~~~C~~---C~~~f~~~~~l~~H~~~~~~ 122 (196)
-...|.|.. |.++|.+..+|+.|+---|.
T Consensus 141 ~g~iFmC~~~~GC~RTyLsqrDlqAHInhrH~ 172 (389)
T KOG2932|consen 141 MGGIFMCAAPHGCLRTYLSQRDLQAHINHRHG 172 (389)
T ss_pred ccceEEeecchhHHHHHhhHHHHHHHhhhhhc
Confidence 345677763 88888888888888864443
No 151
>PF12230 PRP21_like_P: Pre-mRNA splicing factor PRP21 like protein; InterPro: IPR022030 This domain family is found in eukaryotes, and is typically between 212 and 238 amino acids in length. The family is found in association with PF01805 from PFAM. There are two completely conserved residues (W and H) that may be functionally important. PRP21 is required for assembly of the prespliceosome and it interacts with U2 snRNP and/or pre-mRNA in the prespliceosome. This family also contains proteins similar to PRP21, such as the mammalian SF3a. SF3a also interacts with U2 snRNP from the prespliceosome, converting it to its active form. ; PDB: 4DGW_B.
Probab=22.17 E-value=29 Score=26.18 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=0.0
Q ss_pred CceeecccccccccccchhHHHHHHHcCCCCce
Q psy9954 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68 (196)
Q Consensus 36 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~ 68 (196)
.-..|++ ||.... .+.+..|||+......|
T Consensus 167 ~~~~cPi--tGe~IP-~~e~~eHmRi~LlDP~w 196 (229)
T PF12230_consen 167 KMIICPI--TGEMIP-ADEMDEHMRIELLDPRW 196 (229)
T ss_dssp ---------------------------------
T ss_pred ccccccc--cccccc-ccccccccccccccccc
Confidence 3467866 887654 45677788776655444
No 152
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=21.24 E-value=57 Score=18.85 Aligned_cols=8 Identities=13% Similarity=-0.114 Sum_probs=3.4
Q ss_pred CCCccccc
Q psy9954 96 HLTPAKMR 103 (196)
Q Consensus 96 ~~~~C~~C 103 (196)
..|.|+.|
T Consensus 30 ~tYmC~eC 37 (56)
T PF09963_consen 30 HTYMCDEC 37 (56)
T ss_pred cceeChhH
Confidence 33444444
No 153
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=21.21 E-value=54 Score=17.23 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=9.7
Q ss_pred ceeeccCccCccCCC
Q psy9954 67 PYKCMYKGCTKRYTD 81 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~ 81 (196)
||+|.. |++.|=.
T Consensus 12 ~f~C~~--C~~~FC~ 24 (39)
T smart00154 12 GFKCRH--CGNLFCG 24 (39)
T ss_pred CeECCc--cCCcccc
Confidence 788877 8877764
No 154
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=21.15 E-value=60 Score=18.16 Aligned_cols=9 Identities=33% Similarity=0.718 Sum_probs=5.3
Q ss_pred CCcChhccC
Q psy9954 12 FPHCAKAFS 20 (196)
Q Consensus 12 C~~C~k~f~ 20 (196)
|..|++.|.
T Consensus 5 C~~C~~~F~ 13 (57)
T cd00065 5 CMGCGKPFT 13 (57)
T ss_pred CcccCcccc
Confidence 445666665
No 155
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=20.89 E-value=43 Score=19.24 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=8.0
Q ss_pred CCCcChhccCC
Q psy9954 11 QFPHCAKAFSR 21 (196)
Q Consensus 11 ~C~~C~k~f~~ 21 (196)
-||+|++.|..
T Consensus 41 gCPfC~~~~~~ 51 (55)
T PF14447_consen 41 GCPFCGTPFEF 51 (55)
T ss_pred CCCCCCCcccC
Confidence 47888887753
No 157
>KOG0717|consensus
Probab=20.66 E-value=71 Score=27.01 Aligned_cols=22 Identities=23% Similarity=0.691 Sum_probs=18.4
Q ss_pred eeeccCccCccCCChHHHHHHhhh
Q psy9954 68 YKCMYKGCTKRYTDPSSLRKHAKN 91 (196)
Q Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~ 91 (196)
+-|.. |.+.|.+...|..|..+
T Consensus 293 lyC~v--CnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVV--CNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEee--ccccccchHHHHhhHHH
Confidence 78877 99999999988888753
No 158
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=20.55 E-value=74 Score=27.02 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=20.9
Q ss_pred ceeeccCccCccCCChHHHHHHhhhcC
Q psy9954 67 PYKCMYKGCTKRYTDPSSLRKHAKNHN 93 (196)
Q Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~~h~ 93 (196)
-+.|+. |.+.|.+...+..|+..-|
T Consensus 57 FWiCp~--CskkF~d~~~~~~H~~~eH 81 (466)
T PF04780_consen 57 FWICPR--CSKKFSDAESCLSHMEQEH 81 (466)
T ss_pred EeeCCc--ccceeCCHHHHHHHHHHhh
Confidence 489988 9999999999999987433
No 159
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=20.22 E-value=49 Score=21.15 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=11.7
Q ss_pred CCCccccccccCCC
Q psy9954 96 HLTPAKMRKLNYAK 109 (196)
Q Consensus 96 ~~~~C~~C~~~f~~ 109 (196)
+|..|..||+.|.+
T Consensus 57 ~Pa~CkkCGfef~~ 70 (97)
T COG3357 57 RPARCKKCGFEFRD 70 (97)
T ss_pred cChhhcccCccccc
Confidence 46789999999876
No 160
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=20.08 E-value=1.3e+02 Score=15.12 Aligned_cols=6 Identities=0% Similarity=-0.346 Sum_probs=2.5
Q ss_pred cccccc
Q psy9954 99 PAKMRK 104 (196)
Q Consensus 99 ~C~~C~ 104 (196)
.|..||
T Consensus 19 rC~~CG 24 (32)
T PF03604_consen 19 RCPECG 24 (32)
T ss_dssp SBSSSS
T ss_pred ECCcCC
Confidence 344444
Done!