RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9954
(196 letters)
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 138 bits (350), Expect = 3e-42
Identities = 57/82 (69%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQ-RTHFDTRPYKC 70
F C K++SRLENLK H RSHTGE+PY C +EGC KAFSN+SDRAKHQ RTH + +PY C
Sbjct: 72 FEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131
Query: 71 MYKGCTKRYTDPSSLRKHAKNH 92
GCTKRYTDPSSLRKH K
Sbjct: 132 KLPGCTKRYTDPSSLRKHVKTV 153
Score = 103 bits (260), Expect = 8e-29
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMY 72
+ F L +H R HTGE+P+ CT+EGC K++S + H R+H +PY C +
Sbjct: 43 SRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH 102
Query: 73 KGCTKRYTDPSSLRKH 88
+GC+K +++ S KH
Sbjct: 103 EGCSKAFSNASDRAKH 118
Score = 87.3 bits (217), Expect = 2e-22
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 11 QFPHCAKAFSRLENLKIH---QRSHTGERPYSCTYEGC---HKAFSNSSDRAKHQRTHFD 64
++ C++ F E L H + H + + C + GC + F H R H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 65 TRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+P+KC ++GC K Y+ +L+ H ++H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 47.6 bits (114), Expect = 2e-07
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKH---QRTHFDTRPYKCMYKGCT---KRYTDPSSLRKH 88
E +GC + F + H + H + + + C + GC+ + + L H
Sbjct: 1 ETDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 89 AKNH 92
+ H
Sbjct: 59 MRRH 62
Score = 37.6 bits (88), Expect = 8e-04
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 11 QFPHCAKAFSRLENLKIHQRSHTG 34
+ P C K ++ +L+ H ++ G
Sbjct: 132 KLPGCTKRYTDPSSLRKHVKTVHG 155
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 113 bits (286), Expect = 1e-32
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
F C FP C K F+R ENLKIH+R+HTGE+P+ C +EGC + F+NSSDR KH H +
Sbjct: 91 FPCP-FPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Query: 67 PYKC 70
Sbjct: 150 SGPS 153
Score = 106 bits (268), Expect = 6e-30
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMY 72
P K+F L H R HTGE+P+ C + GC K F+ S + H+RTH +P+KC +
Sbjct: 66 PREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125
Query: 73 KGCTKRYTDPSSLRKHAKNH 92
+GC +R+ + S +KH H
Sbjct: 126 EGCDRRFANSSDRKKHMHVH 145
Score = 85.4 bits (212), Expect = 1e-21
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCTYEG-------CHKAFSNSSDRAKHQRTHFDTR 66
C + FS + L H P + K+F H R H +
Sbjct: 30 SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Query: 67 PYKCMYKGCTKRYTDPSSLRKHAKNH 92
P+ C + GC K + +L+ H + H
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 63.1 bits (154), Expect = 4e-13
Identities = 9/85 (10%), Positives = 21/85 (24%), Gaps = 9/85 (10%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
+ ++ + + + C + FS + H P + +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 75 -------CTKRYTDPSSLRKHAKNH 92
K + L H + H
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVH 85
Score = 51.1 bits (123), Expect = 9e-09
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
F C +F C + F+ + K H HT ++ +
Sbjct: 121 FKC-EFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 104 bits (262), Expect = 2e-29
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
+C++ C KAF LK HQ HTGE+P+ CT+EGC K FS + H R H R
Sbjct: 35 HVCAE---CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 67 PYKCMYKGCTKRYTDPSSLRKHAKNH 92
PY C + GC K++ ++L+ H H
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 88.7 bits (221), Expect = 3e-23
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
C C K F ++ H +H G R + C C KAF SS +HQ H +
Sbjct: 6 IACPH-KGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEK 61
Query: 67 PYKCMYKGCTKRYTDPSSLRKHAKNH 92
P++C ++GC KR++ +LR H + H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 81.8 bits (203), Expect = 2e-20
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYK 69
C K FS NL+ H R HTG+RPY C ++GC+K F+ S++ H TH + +
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 61.0 bits (149), Expect = 1e-12
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
R +C ++GC K F ++S KH TH R + C C K + + S L++H H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVC--AECGKAFVESSKLKRHQLVH 57
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 103 bits (259), Expect = 2e-29
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 11 QFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
+P C K +++ +LK H R+HTGE+PY CT+EGC F+ S + +H R H +P++C
Sbjct: 19 DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC 78
Query: 71 MYKGCTKRYTDPSSLRKHAKNH 92
C + ++ L H K H
Sbjct: 79 GV--CNRSFSRSDHLALHMKRH 98
Score = 67.7 bits (166), Expect = 2e-15
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 18 AFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTK 77
+ +R H C Y GC K ++ SS H RTH +PYKC ++GC
Sbjct: 2 SSGSSGPDLEKRRIHY------CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 78 RYTDPSSLRKHAKNH 92
R+ L +H + H
Sbjct: 56 RFARSDELTRHYRKH 70
Score = 33.8 bits (78), Expect = 0.007
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHT 33
F C C ++FSR ++L +H + H
Sbjct: 76 FQC---GVCNRSFSRSDHLALHMKRHQ 99
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 98.8 bits (247), Expect = 2e-27
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 11 QFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
+ C K +++ +LK H R+HTGE+PY C ++GC F+ S + +H R H RP++C
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC 68
Query: 71 MYKGCTKRYTDPSSLRKHAKNH 92
C + ++ L H K H
Sbjct: 69 QK--CDRAFSRSDHLALHMKRH 88
Score = 70.6 bits (174), Expect = 9e-17
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
+ C + C F+R + L H R HTG RP+ C C +AFS S A H + HF
Sbjct: 36 YHCD-WDGCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRAFSRSDHLALHMKRHF 89
Score = 64.1 bits (157), Expect = 4e-14
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKN 91
T C Y GC K ++ SS H RTH +PY C + GC ++ L +H +
Sbjct: 2 RTATHT--CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 92 H 92
H
Sbjct: 60 H 60
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 97.6 bits (244), Expect = 3e-27
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQR-SHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT 65
C FP C + FS + L H++ H ++ +SC C K+F+ +H + H DT
Sbjct: 8 MPCD-FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 66 RPYKCMYKGCT 76
R Y C + G +
Sbjct: 67 RDYICEFSGPS 77
Score = 75.7 bits (187), Expect = 1e-18
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQR-THFDTRPYKCMYKGCTKRYTDPSSLRKHAK 90
+G C + GC + FSN H++ H + + C C K + L++H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 91 NH 92
H
Sbjct: 62 LH 63
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 96.9 bits (242), Expect = 7e-27
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCM 71
F +C KAF + LK+HQ SHT + PY C +EGC K FS S +H++ H K
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD- 64
Query: 72 YKGCTKRYTDPSSLRKHAKNHNH 94
C+ + KH H
Sbjct: 65 -DSCSFVGKTWTLYLKHVA-ECH 85
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 98.0 bits (245), Expect = 8e-27
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCM 71
F C + FSR + LK HQR HTG +P+ C + C + FS S H RTH +P+ C
Sbjct: 41 FKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
Query: 72 YKGCTKRYTDPSSLRKHAKNH 92
+ C K++ L +H H
Sbjct: 99 WPSCQKKFARSDELVRHHNMH 119
Score = 95.7 bits (239), Expect = 6e-26
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
F+C+ P C K + +L +L++H R HTGE+PY C ++ C + FS S +HQR H +
Sbjct: 7 FMCAY-PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 67 PYKCMYKGCTKRYTDPSSLRKHAKNH 92
P++C K C ++++ L+ H + H
Sbjct: 66 PFQC--KTCQRKFSRSDHLKTHTRTH 89
Score = 71.4 bits (176), Expect = 1e-16
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +RP+ C Y GC+K + S H R H +PY+C +K C +R++ L++H + H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 99.2 bits (248), Expect = 2e-26
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
CS F C A+++ L+ H HTGE+P+ C EGC K F++ +H TH + +
Sbjct: 15 CS-FADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 73
Query: 69 KCMYKGCTKRYTDPSSLRKHAKNH 92
C GC R+T ++++KH
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNRF 97
Score = 96.9 bits (242), Expect = 1e-25
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGER--PYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
C C F+ N+K H + Y C +E C KAF + HQ +H
Sbjct: 75 CDS-DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Query: 67 PYKCMYKGCTKRYTDPSSLRKHAKNH 92
PY+C ++GC KR++ PS L++H K H
Sbjct: 134 PYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 86.1 bits (214), Expect = 2e-21
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCM 71
F +C KAF + LK+HQ SHT + PY C +EGC K FS S +H++ H K
Sbjct: 109 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD- 167
Query: 72 YKGCTKRYTDPSSLRKH 88
C+ + KH
Sbjct: 168 -DSCSFVGKTWTLYLKH 183
Score = 78.8 bits (195), Expect = 1e-18
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRK 87
+ + Y C++ C A++ + H H +P+ C +GC K +T L +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 88 HAKNH 92
H+ H
Sbjct: 63 HSLTH 67
Score = 57.2 bits (139), Expect = 1e-10
Identities = 14/55 (25%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKH-QRTH 62
C C K FS LK H++ H G C + KH H
Sbjct: 137 CPH-EGCDKRFSLPSRLKRHEKVHAGYPCKKD-DS-CSFVGKTWTLYLKHVAECH 188
Score = 39.5 bits (93), Expect = 2e-04
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + Y C + C Y L+ H H
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH 37
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 89.4 bits (223), Expect = 6e-24
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYK 73
C + FS+ +L H R HTG++P+ C C + FS S H RTH +P+ C
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI- 67
Query: 74 GCTKRYTDPSSLRKHAKNH 92
C +++ ++H K H
Sbjct: 68 -CGRKFARSDERKRHTKIH 85
Score = 75.2 bits (186), Expect = 2e-18
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
F C C + FSR ++L H R+HTGE+P++C + C + F+ S +R +H + H
Sbjct: 35 FQCRI---CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIH 85
Score = 60.2 bits (147), Expect = 1e-12
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
ERPY+C E C + FS S +H R H +P++C + C + ++ L H + H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTH 57
Score = 40.9 bits (97), Expect = 1e-05
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
F C C + F+R + K H + H ++
Sbjct: 63 FACDI---CGRKFARSDERKRHTKIHLRQK 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 89.0 bits (222), Expect = 1e-23
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
C C K FSR + LK H R HTG +PY C + C A ++SS KH R H D RP+
Sbjct: 11 CEV---CGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 69 KCMYKGCTKRYTDPSSLRKHAKNH 92
KC + C + S L H ++H
Sbjct: 66 KC--QICPYASRNSSQLTVHLRSH 87
Score = 65.9 bits (162), Expect = 9e-15
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 31 SHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAK 90
S P+ C E C K FS H R H +PYKC K C D SSL KH +
Sbjct: 2 SSGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLR 57
Query: 91 NH 92
H
Sbjct: 58 IH 59
Score = 49.0 bits (118), Expect = 2e-08
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSC 40
C C A L +H RSHTG+ S
Sbjct: 67 CQI---CPYASRNSSQLTVHLRSHTGDSGPSS 95
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 87.2 bits (217), Expect = 5e-23
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT- 65
F C C + FSR ++L H R+HTGE+P++C + C + F+ S +R +H+
Sbjct: 4 FQCRI---CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQ--HI 56
Query: 66 RPYKCMYKGCTKRYTDPSSLRKH 88
P + + L
Sbjct: 57 LPILEDK--VEELLSKNYHLENE 77
Score = 34.0 bits (79), Expect = 0.005
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 6/33 (18%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQ---RSHTGER 36
L + + S+ +L+ + GER
Sbjct: 59 ILEDK---VEELLSKNYHLENEVARLKKLVGER 88
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 85.6 bits (213), Expect = 1e-22
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
C C K+F R L H H+ RPY C Y C K F SD KH H +P+
Sbjct: 4 CKI---CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 69 KCMYKGCTKRYTDPSSLRKHAKNH 92
KC + C K ++ S+L H++ H
Sbjct: 59 KC--QVCGKAFSQSSNLITHSRKH 80
Score = 35.1 bits (82), Expect = 0.002
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTG 34
C C KAFS+ NL H R HTG
Sbjct: 60 CQV---CGKAFSQSSNLITHSRKHTG 82
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 86.3 bits (215), Expect = 2e-22
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYK 73
C + F++ NL IH+R+HT ERPY+C + CHKAF H+ H +P+KC +
Sbjct: 22 FCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKC--Q 77
Query: 74 GCTKRYTDPSSLRKHAKNH 92
C K + +L H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 77.1 bits (191), Expect = 6e-19
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
C C KAF R ++L+ H+ H+ E+P+ C + C K F S A H+ H T
Sbjct: 48 CDI---CHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLHMQTSSP 102
Query: 69 KC 70
Sbjct: 103 TA 104
Score = 73.2 bits (181), Expect = 2e-17
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 24 NLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPS 83
+ ++ + C + C + F+ S + H+RTH D RPY C C K +
Sbjct: 4 GSSGGRLPSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQD 59
Query: 84 SLRKHAKNH 92
LR H H
Sbjct: 60 HLRDHRYIH 68
Score = 47.8 bits (115), Expect = 6e-08
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C + C K F + L +H+ H +
Sbjct: 76 CQE---CGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 35.5 bits (83), Expect = 0.002
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 52 SSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
SS + + + + C K C + +T +L H + H
Sbjct: 2 SSGSSGGRLPSKTKKEFIC--KFCGRHFTKSYNLLIHERTH 40
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 84.1 bits (209), Expect = 9e-22
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHF--D 64
C C K F + +L H+ SH+GE+PYSC C F + H R+H
Sbjct: 8 VACEI---CGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSV 62
Query: 65 TRPYKCMYKGCTKRYTDPSSLRKHAK 90
+PY C + C K ++ P L H K
Sbjct: 63 GKPYIC--QSCGKGFSRPDHLNGHIK 86
Score = 61.4 bits (150), Expect = 5e-13
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKN 91
+G +C C K F + +H+ +H +PY C C R+ + H ++
Sbjct: 2 SSGSSGVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRS 57
Query: 92 H 92
H
Sbjct: 58 H 58
Score = 34.0 bits (79), Expect = 0.006
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 7 FLCSQFPHCAKAFSRLENLKIH-QRSHTGER 36
++C C K FSR ++L H ++ H+G
Sbjct: 66 YICQS---CGKGFSRPDHLNGHIKQVHSGPS 93
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 86.0 bits (214), Expect = 2e-21
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
C + C K+FSR ++L HQR+HTGE+PY C C K+FS+ D +HQRTH +PY
Sbjct: 24 CPE---CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 69 KCMYKGCTKRYTDPSSLRKHAKNH 92
KC C K ++ ++LR H + H
Sbjct: 79 KC--PECGKSFSQRANLRAHQRTH 100
Score = 84.8 bits (211), Expect = 4e-21
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
C + C K+FS+L +L+ HQR+HTGE+PY C C K+FS + HQRTH +PY
Sbjct: 108 CPE---CGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPY 162
Query: 69 KCMYKGCTKRYTDPSSLRKHAKNH 92
KC C K ++ +L H + H
Sbjct: 163 KC--PECGKSFSRRDALNVHQRTH 184
Score = 84.0 bits (209), Expect = 8e-21
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
C + C K+FS+ NL+ HQR+HTGE+PY+C C K+FS + HQRTH +PY
Sbjct: 80 CPE---CGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 69 KCMYKGCTKRYTDPSSLRKHAKNH 92
KC C K ++ +L H + H
Sbjct: 135 KC--PECGKSFSREDNLHTHQRTH 156
Score = 77.1 bits (191), Expect = 4e-18
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 18 AFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTK 77
+ + GE+PY+C C K+FS S A+HQRTH +PYKC C K
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKC--PECGK 57
Query: 78 RYTDPSSLRKHAKNH 92
++D L +H + H
Sbjct: 58 SFSDKKDLTRHQRTH 72
Score = 41.7 bits (99), Expect = 3e-05
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERP 37
C + C K+FSR + L +HQR+HTG++
Sbjct: 164 CPE---CGKSFSRRDALNVHQRTHTGKKT 189
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 82.0 bits (203), Expect = 3e-21
Identities = 24/56 (42%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+CS P C K + + +LK H R+HTGE+P+SC+++GC + F+ S + ++H+RTH
Sbjct: 18 HICS-HPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 75.5 bits (186), Expect = 9e-19
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 25 LKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSS 84
Q + R + C++ GC K + SS H RTH +P+ C +KGC +R+
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 85 LRKHAKNH 92
L +H + H
Sbjct: 65 LSRHRRTH 72
Score = 42.4 bits (100), Expect = 3e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 SSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
SS + Q R + C + GC K Y S L+ H + H
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 81.3 bits (202), Expect = 1e-20
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYK 73
C K+F+ H H G RPY C C K F H + H +PY+C
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYEC--N 69
Query: 74 GCTKRYTDPSSLRKH 88
C KR+ S +H
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 76.3 bits (189), Expect = 1e-18
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
C C K F +L H + HTG +PY C C K F H+ T+ Y
Sbjct: 40 CGV---CGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSF--HRHVTSCTKSY 92
Query: 69 KCMYKGCTKRYTDPSSLR 86
+ + T+ S
Sbjct: 93 EA--AKAEQNTTEASGPS 108
Score = 65.9 bits (162), Expect = 1e-14
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 30 RSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHA 89
+G++ Y C C K+F++ S R +H H RPY C C K++ L H
Sbjct: 3 SGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGC--GVCGKKFKMKHHLVGHM 57
Query: 90 KNH 92
K H
Sbjct: 58 KIH 60
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 81.0 bits (201), Expect = 3e-20
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRS---HTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT 65
C + C K + R ENL H+ + E+ ++C+ C + F + H +H
Sbjct: 38 CPK---CGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRRMELRLHMVSHTGE 92
Query: 66 RPYKCMYKGCTKRYTDPSSLRKH 88
PYKC C++++ L+ H
Sbjct: 93 MPYKC--SSCSQQFMQKKDLQSH 113
Score = 80.2 bits (199), Expect = 5e-20
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQR---THFDT 65
C C K F LK+H R HTGE+P+ C C K + + +H+ +
Sbjct: 10 CPT---CHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEARNCMNRSE 64
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + C C + + LR H +H
Sbjct: 65 QVFTC--SVCQETFRRRMELRLHMVSH 89
Score = 66.8 bits (164), Expect = 7e-15
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQ-RTH 62
CS C + F R L++H SHTGE PY C+ C + F D H + H
Sbjct: 69 CSV---CQETFRRRMELRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLH 118
Score = 63.3 bits (155), Expect = 1e-13
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKH 88
+G C CHK F + H R H +P++C C K Y +L +H
Sbjct: 2 SSGSSGVECPT--CHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEH 54
Score = 34.0 bits (79), Expect = 0.008
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 9 CSQFPHCAKAFSRLENLKIHQ-RSHTGER 36
CS C++ F + ++L+ H + H+G
Sbjct: 97 CSS---CSQQFMQKKDLQSHMIKLHSGPS 122
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 76.8 bits (190), Expect = 5e-19
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 24 NLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH----FDTRPYKCMYKGCTKRY 79
+ R+HTGE+PY+C++ C K F H + + F + C C K +
Sbjct: 2 SSGSSGRTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVC--SKCGKTF 57
Query: 80 TDPSSLRKHAKNH 92
T +++ +HA N
Sbjct: 58 TRRNTMARHADNC 70
Score = 71.0 bits (175), Expect = 7e-17
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 14 HCAKAFSRLENLKIHQRSHTGE----RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYK 69
HC K F + + L +H + + + C+ C K F+ + A+H +
Sbjct: 20 HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRRNTMARHADNCAGPDGVE 77
Query: 70 C 70
Sbjct: 78 G 78
Score = 52.1 bits (126), Expect = 9e-10
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAF 49
F+CS+ C K F+R + H + G +
Sbjct: 48 FVCSK---CGKTFTRRNTMARHADNCAGPDGVEGEN--SGPSS 85
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 75.6 bits (187), Expect = 9e-19
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 24 NLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH--FDTRPYKCMYKGCTKRYTD 81
+ R+H+GE+PY C CH F+ S H + + C + C
Sbjct: 2 SSGSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIAR 57
Query: 82 PSSLRKHAKNH 92
S L H +
Sbjct: 58 KSDLGVHLRKQ 68
Score = 62.9 bits (154), Expect = 8e-14
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGE--RPYSCTYEGCHKAFSNSSDRAKHQRT-HFDTRPY 68
C F++ +K+H E + C + C + SD H R H + P
Sbjct: 19 YICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 47.1 bits (113), Expect = 6e-08
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 13 PHCAKAFSRLENLKIHQRS-HTGERPYS 39
PHC +R +L +H R H+ P S
Sbjct: 49 PHCDTVIARKSDLGVHLRKQHSYSGPSS 76
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 73.2 bits (181), Expect = 7e-18
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 24 NLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPS 83
+ + R Y C C K+FS+SSD +KH+RTH +PYKC C K + S
Sbjct: 5 SSGRSEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRS 60
Query: 84 SLRKHAKNH 92
L H + H
Sbjct: 61 HLIGHHRVH 69
Score = 72.1 bits (178), Expect = 2e-17
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYK 69
C K+FS +L H+R+HTGE+PY C + C KAF S H R H + P
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 37.8 bits (89), Expect = 1e-04
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 52 SSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
S + + + R YKC C K ++ S L KH + H
Sbjct: 3 SGSSGRSEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTH 41
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 72.9 bits (180), Expect = 1e-17
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 24 NLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPS 83
+ H ++PY C + C +F + A H+ H +PY+C C ++ P+
Sbjct: 4 HHHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPA 59
Query: 84 SLRKHAKNH 92
+L+ H + H
Sbjct: 60 NLKTHTRIH 68
Score = 69.8 bits (172), Expect = 1e-16
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
C +F NL H+ HTGE+PY C C F+ ++ H R H +PY
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 52 SSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
H +PYKC C + +L H H
Sbjct: 2 GHHHHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVH 40
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 71.7 bits (177), Expect = 2e-17
Identities = 27/54 (50%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
C KAFSR L HQR HTGE+PY C C KAFS +S HQR H
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 71.0 bits (175), Expect = 5e-17
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 25 LKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSS 84
H+GE+PY C C KAFS SS +HQR H +PYKC C K ++ S
Sbjct: 2 SSGSSGIHSGEKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSG 57
Query: 85 LRKHAKNH 92
L H + H
Sbjct: 58 LINHQRIH 65
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 71.4 bits (176), Expect = 3e-17
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKH-QRTH 62
F+C C +AF+R E+LK H RSHT E+PY C C++AF+ +H Q+ H
Sbjct: 3 FVCEV---CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIH 54
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 7 FLCSQFPHCAKAFSRLENLKIH-QRSHTGE 35
+ C C +AF+R + L H Q+ H+G
Sbjct: 31 YPCGL---CNRAFTRRDLLIRHAQKIHSGN 57
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 69.9 bits (172), Expect = 1e-16
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 29 QRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT--RPYKCMYKGCTKRYTDPSSLR 86
+ + GE Y C C + +++ S+ +H T + Y C + C K +T ++
Sbjct: 2 EFTKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMT 57
Query: 87 KHAKNHN 93
H K +
Sbjct: 58 AHVKIIH 64
Score = 68.0 bits (167), Expect = 7e-16
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 13 PHCAKAFSRLENLKIHQRS--HTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
C++ ++ + N H + + Y C + C K F+ + H +
Sbjct: 14 KVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKII 63
Score = 36.8 bits (86), Expect = 3e-04
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 59 QRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHNH 94
+ T Y+C C++ YT S+ +H +
Sbjct: 2 EFTKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHK 35
Score = 36.0 bits (84), Expect = 5e-04
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 13 PHCAKAFSRLENLKIHQRSHTG 34
P C K F+R +N+ H +
Sbjct: 44 PFCFKEFTRKDNMTAHVKIIHK 65
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 70.0 bits (172), Expect = 1e-16
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 19 FSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKR 78
+ NL + RPY+C E C + FS S + +H R H +P++C + C +
Sbjct: 3 PHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRN 58
Query: 79 YTDPSSLRKHAKNH 92
++ L H + H
Sbjct: 59 FSRSDHLTTHIRTH 72
Score = 65.8 bits (161), Expect = 5e-15
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+ C C + FSR + L H R HTG++P+ C C + FS S H RTH
Sbjct: 20 YACP-VESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTH 72
Score = 33.4 bits (77), Expect = 0.005
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHT 33
F C C + FSR ++L H R+HT
Sbjct: 50 FQC---RICMRNFSRSDHLTTHIRTHT 73
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 66.2 bits (162), Expect = 2e-15
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+P++CT+ GC FS S + ++H+R+H +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 51.1 bits (123), Expect = 9e-10
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
F C+ +P C FSR + L H+RSH+G +P +
Sbjct: 13 FACT-WPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 41.9 bits (99), Expect = 2e-06
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 58 HQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P+ C + GC R++ L +H ++H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 66.0 bits (162), Expect = 3e-15
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
CS+ C+ + S L+IH+R H +RP+ C Y C S+ +KH +
Sbjct: 10 EKCSE---CSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKKF 60
Score = 65.6 bits (161), Expect = 5e-15
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 30 RSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHA 89
S + P C+ C + S+ + H+R H RP+KC Y C+ PS+L KH
Sbjct: 2 SSGSSGHPEKCSE--CSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHM 57
Query: 90 KNH 92
K
Sbjct: 58 KKF 60
Score = 37.9 bits (89), Expect = 1e-04
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C+ C+ + NL H + G+ +
Sbjct: 40 CNY---CSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 2e-14
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGERPY CT C KAF++ S+ KHQ+ H +P
Sbjct: 3 SGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-08
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSC 40
C+ C KAF+ NL HQ+ HTGE+P
Sbjct: 15 CTV---CGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 58 HQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ RPY C C K +TD S+L KH K H
Sbjct: 3 SGSSGTGERPYIC--TVCGKAFTDRSNLIKHQKIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-14
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+PY C Y C KAF S++ +HQR H +P
Sbjct: 3 SGSSGSGEKPYVCDY--CGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCT 41
+C KAF L HQR HTGE+P +
Sbjct: 17 YCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.003
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C C K + + L +H + H
Sbjct: 2 SSGSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 63.3 bits (155), Expect = 3e-14
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 27 IHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAF+ S+ HQRTH
Sbjct: 2 SSGSSGTGEKPYECNE--CQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 49.8 bits (120), Expect = 3e-09
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSC 40
C++ C KAF+ NL +HQR+HTGE S
Sbjct: 15 CNE---CQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 33.6 bits (78), Expect = 0.003
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K + S+L H + H
Sbjct: 1 GSSGSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 4e-14
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 27 IHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C E C K +++ + HQ+ H RP
Sbjct: 2 SSGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 49.1 bits (118), Expect = 6e-09
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C + C K ++ NL +HQ+ HTGERP +
Sbjct: 15 CEK---CGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 35.2 bits (82), Expect = 7e-04
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC + C K Y +L H K H
Sbjct: 1 GSSGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 62.6 bits (153), Expect = 6e-14
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TG+RPY C C KAF S H+R+H +P
Sbjct: 3 SGSSGTGQRPYECIE--CGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 9e-09
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEG 44
C + C KAF +L H+RSHTGE+P + G
Sbjct: 15 CIE---CGKAFKTKSSLICHRRSHTGEKPSGPS-SG 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ RPY+C C K + SSL H ++H
Sbjct: 1 GSSGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 62.2 bits (152), Expect = 6e-14
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C E C K F D H H +P
Sbjct: 3 SGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 5e-08
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F +L H HTGE+P +
Sbjct: 18 CGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC + C K + L H H
Sbjct: 1 GSSGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 6e-14
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 27 IHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TG +PY C C KAFS +S A+HQR H +P
Sbjct: 2 SSGSSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 4e-08
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAFS+ L HQR HTGE+P +
Sbjct: 18 CGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 6e-14
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGER Y C+ C KAF+ S HQR H +P
Sbjct: 3 SGSSGTGERHYECSE--CGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 8e-09
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
CS+ C KAF+R L +HQR HTGE+P +
Sbjct: 15 CSE---CGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ R Y+C C K + S+L H + H
Sbjct: 1 GSSGSSGTGERHYEC--SECGKAFARKSTLIMHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 7e-14
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 27 IHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+PY C C K FS S + HQRTH +P
Sbjct: 2 SSGSSGSGEKPYGCNE--CGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 4e-08
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEG 44
C++ C K FS+ L HQR+HTGE+P + G
Sbjct: 15 CNE---CGKTFSQKSILSAHQRTHTGEKPSGPS-SG 46
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 62.2 bits (152), Expect = 7e-14
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY+C + C K+F +S KHQR H +P
Sbjct: 3 SGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 46.8 bits (112), Expect = 5e-08
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C + C K+F L HQR H+GE+P +
Sbjct: 15 CKE---CGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 35.2 bits (82), Expect = 8e-04
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C K C K + S L KH + H
Sbjct: 1 GSSGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 62.1 bits (152), Expect = 8e-14
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+P+ C C K+FS SS A HQR H +P
Sbjct: 3 SGSSGTGEKPFECAE--CGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-08
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C++ C K+FS L HQR HTGE+P +
Sbjct: 15 CAE---CGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P++C C K ++ S L H + H
Sbjct: 2 SSGSSGTGEKPFEC--AECGKSFSISSQLATHQRIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 8e-14
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C+ C K+F S HQR H P
Sbjct: 3 SGSSGTGEKPYECSD--CGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 48.7 bits (117), Expect = 7e-09
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSC 40
CS C K+F + L +HQR HTGE P
Sbjct: 15 CSD---CGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 35.2 bits (82), Expect = 8e-04
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K + S L H + H
Sbjct: 1 GSSGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 8e-14
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 27 IHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C+ C K+F+ S HQ+ H +P
Sbjct: 2 SSGSSGTGEKPYECSI--CGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 49.5 bits (119), Expect = 4e-09
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
CS C K+F++ L +HQ+ HTGE+P +
Sbjct: 15 CSI---CGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 7e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K +T S L H + H
Sbjct: 1 GSSGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 9e-14
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 27 IHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C+ C KAFS+ + HQR H +P
Sbjct: 2 SSGSSGTGEKPYECSV--CGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 48.7 bits (117), Expect = 8e-09
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
CS C KAFS ++L +HQR H+G++P +
Sbjct: 15 CSV---CGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K ++ SL H + H
Sbjct: 1 GSSGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 61.8 bits (151), Expect = 9e-14
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TG +PY C+ C K FS S HQR+H +P
Sbjct: 3 SGSSGTGVKPYGCSQ--CAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.8 bits (120), Expect = 3e-09
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
CSQ CAK FS L +HQRSHTG +P +
Sbjct: 15 CSQ---CAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C C K ++ S L H ++H
Sbjct: 1 GSSGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 61.8 bits (151), Expect = 1e-13
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 27 IHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TG++P+ CT+ C K+F + HQR H +
Sbjct: 2 SSGSSGTGQKPFECTH--CGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 49.1 bits (118), Expect = 5e-09
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCT 41
HC K+F NL HQR HTGE+ +
Sbjct: 17 HCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 32.9 bits (76), Expect = 0.005
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P++C C K + +L H + H
Sbjct: 1 GSSGSSGTGQKPFEC--THCGKSFRAKGNLVTHQRIH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 1e-13
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAF+ S+ KHQ+ H +P
Sbjct: 3 SGSSGTGEKPYICAE--CGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C++ C KAF+ NL HQ+ HT ++P +
Sbjct: 15 CAE---CGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C C K +T S+L KH K H
Sbjct: 1 GSSGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 1e-13
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+P+ C+ C KAF+ S+ HQRTH +P
Sbjct: 3 SGSSGTGEKPFECSE--CQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 2e-09
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
F CS+ C KAF+ NL +HQR+HTGE+P +
Sbjct: 13 FECSE---CQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.004
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P++C C K + S+L H + H
Sbjct: 1 GSSGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 1e-13
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TG +PY C C KAFS S HQ H +P
Sbjct: 3 SGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 9e-08
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSC 40
C KAFS +L HQ HTGE+P
Sbjct: 18 CGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 8e-04
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C C K ++ SSL H H
Sbjct: 1 GSSGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY+C E C KAF + S +HQR H +P
Sbjct: 3 SGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-08
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAF L+ HQR HTGE+P +
Sbjct: 18 CGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C + C K + S L++H + H
Sbjct: 2 SSGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAF ++S +HQR H RP
Sbjct: 3 SGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 46.4 bits (111), Expect = 6e-08
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAF + HQR HTG+RP +
Sbjct: 18 CGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 35.2 bits (82), Expect = 7e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K + D SS +H + H
Sbjct: 1 GSSGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 27 IHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAFS+ + +HQR H +P
Sbjct: 2 SSGSSGTGEKPYECDV--CRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 46.3 bits (111), Expect = 5e-08
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C C KAFS +L HQR H+GE+P +
Sbjct: 15 CDV---CRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.004
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K ++ +SL +H + H
Sbjct: 1 GSSGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAFS S HQ H +P
Sbjct: 3 SGSSGTGEKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C+Q C KAFS +L HQ HTG++P +
Sbjct: 15 CNQ---CGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 36.4 bits (85), Expect = 3e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K ++ SSL H H
Sbjct: 1 GSSGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+PY C C K + D HQR H +
Sbjct: 3 SGSSGSGEKPYKCVE--CGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 49.1 bits (118), Expect = 5e-09
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K + R +L HQR HTGE+ +
Sbjct: 18 CGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 33.7 bits (78), Expect = 0.003
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K Y L H + H
Sbjct: 2 SSGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C + CHK+F S HQR H +P
Sbjct: 3 SGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 5e-08
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K+F +L +HQR HTGE+P +
Sbjct: 18 CHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K + SSL H + H
Sbjct: 1 GSSGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE PY C C KAFS HQRTH +P
Sbjct: 3 SGSSGTGENPYECHE--CGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 48.7 bits (117), Expect = 8e-09
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAFSR L HQR+H GE+P +
Sbjct: 18 CGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.003
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ PY+C C K ++ L H + H
Sbjct: 1 GSSGSSGTGENPYEC--HECGKAFSRKYQLISHQRTH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 27 IHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S GE+ Y C + C K FS SS HQR H +P
Sbjct: 2 SSGSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 5e-08
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K FS+ +L+ HQR HTGE+P +
Sbjct: 18 CGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.010
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + YKC C K ++ S L+ H + H
Sbjct: 1 GSSGSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.3 bits (150), Expect = 1e-13
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TG +PY C C KAF + S H RTH
Sbjct: 3 SGSSGTGMKPYVCNE--CGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 48.6 bits (117), Expect = 7e-09
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSC 40
C++ C KAF L IH R+HTGE S
Sbjct: 15 CNE---CGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C C K + S L H + H
Sbjct: 1 GSSGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE P+ C+ C K F++ ++ HQ+ H RP
Sbjct: 3 SGSSGTGENPFICS--ECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 49.4 bits (119), Expect = 5e-09
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
F+CS+ C K F+ NL IHQ+ HTGERP +
Sbjct: 13 FICSE---CGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S + E+PY C E C K ++ + HQR H +
Sbjct: 3 SGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 48.3 bits (116), Expect = 1e-08
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K ++R NL +HQR H GE+ +
Sbjct: 18 CGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC + C K Y +L H + H
Sbjct: 1 GSSGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-13
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+ Y+C + C K+FS + KH+R H +P
Sbjct: 3 SGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K+FSR L H+R H+GE+P +
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.005
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + Y C K C K ++ L KH + H
Sbjct: 1 GSSGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-13
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAFS +S A+HQR H +P
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-08
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAFS+ L HQR HTGE+P +
Sbjct: 18 CGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.005
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K ++ S L +H + H
Sbjct: 2 SSGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 2e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAF++ S+ HQ+ H +P
Sbjct: 3 SGSSGTGEKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-08
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSC 40
C++ C KAF+ NL HQ+ HTGE+P
Sbjct: 15 CAE---CGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 3e-04
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K +TD S+L H K H
Sbjct: 1 GSSGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 2e-13
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+P+ C C K+FS +S HQR H P
Sbjct: 3 SGSSGTGEKPHECRE--CGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C + C K+FS L +HQR HTGE P +
Sbjct: 15 CRE---CGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 32.5 bits (75), Expect = 0.006
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P++C + C K ++ S L H + H
Sbjct: 2 SSGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 2e-13
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S GE+PY C+ C KAFS+ S H RTH +P
Sbjct: 3 SGSSGAGEKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 49.1 bits (118), Expect = 5e-09
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
CS+ C KAFS L IH R+H+GE+P +
Sbjct: 15 CSE---CGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.003
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C C K ++ S L H + H
Sbjct: 1 GSSGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 2e-13
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAF S A HQ TH +P
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-08
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAF +L IHQ +H+GE+P +
Sbjct: 17 ECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 35.6 bits (83), Expect = 5e-04
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K + SSL H H
Sbjct: 1 GSSGSSGTGEKPYKC--NECGKAFRARSSLAIHQATH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 2e-13
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGER Y C C KAF S + HQR H +P
Sbjct: 3 SGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-08
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
CS+ C KAF + L +HQR H GE+P +
Sbjct: 15 CSE---CGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.005
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ R Y+C C K + S+L H + H
Sbjct: 2 SSGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 2e-13
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C+ C KAF+ S HQ++H R
Sbjct: 3 SGSSGTGEKPYKCS--DCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 51.4 bits (124), Expect = 9e-10
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
CS C KAF+R L IHQ+SHTGER +
Sbjct: 15 CSD---CGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 35.9 bits (84), Expect = 3e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K +T S L H ++H
Sbjct: 1 GSSGSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 60.6 bits (148), Expect = 2e-13
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+P+ C C K FS S H + H +P
Sbjct: 3 SGSSGTGEKPFKCVE--CGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 8e-09
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K FSR L +H + HTGE+P +
Sbjct: 18 CGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 3e-04
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P+KC C K ++ S+L H K H
Sbjct: 1 GSSGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-13
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TG + + CT C KAF+ S + HQ+ H +P
Sbjct: 3 SGSSGTGGKHFECTE--CGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C++ C KAF+R L +HQ+ HTGE+P +
Sbjct: 15 CTE---CGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.002
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + ++C C K +T S+L H K H
Sbjct: 1 GSSGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-13
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGERP+ C C K+F S+ +HQR H +P
Sbjct: 3 SGSSGTGERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 6e-08
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K+F + +L HQR HTGE+P +
Sbjct: 18 CGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.004
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ RP+KC C K + + L +H + H
Sbjct: 1 GSSGSSGTGERPHKC--NECGKSFIQSAHLIQHQRIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-13
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C+ C K+F+ S HQ+ H R
Sbjct: 3 SGSSGTGEKPYKCS--DCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 48.3 bits (116), Expect = 1e-08
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
CS C K+F+ L+IHQ+ HTGER +
Sbjct: 15 CSD---CGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 35.6 bits (83), Expect = 6e-04
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K +T S LR H K H
Sbjct: 1 GSSGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-13
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAF S+ HQ H +P
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-08
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAF NL HQ HTGE+P +
Sbjct: 18 CGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.005
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K + S+L H H
Sbjct: 1 GSSGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAF+ ++ +HQR H +P
Sbjct: 3 SGSSGTGEKPYRCGE--CGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAF++ NL HQR HTGE+P +
Sbjct: 18 CGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K + ++L +H + H
Sbjct: 1 GSSGSSGTGEKPYRC--GECGKAFAQKANLTQHQRIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 4e-13
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAF+ + A+HQ+TH +P
Sbjct: 3 SGSSGTGEKPYECKV--CSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCT 41
C+KAF++ +L HQ++HTGE+P +
Sbjct: 17 VCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 3e-04
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C K C+K +T + L +H K H
Sbjct: 1 GSSGSSGTGEKPYEC--KVCSKAFTQKAHLAQHQKTH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 4e-13
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C K+F S +H+R H +P
Sbjct: 3 SGSSGTGEKPYICNE--CGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-08
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K+F + +L H+R HTGE+P +
Sbjct: 18 CGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 5e-04
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C C K + S L +H + H
Sbjct: 1 GSSGSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 4e-13
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S G++ + C C K F+ SS HQR H +P
Sbjct: 3 SGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 6e-08
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F++ +L +HQR HTGE+P +
Sbjct: 18 CKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.003
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + +KC C K +T SSL H + H
Sbjct: 1 GSSGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 4e-13
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+P+ C E C K F +S HQR+H +P
Sbjct: 3 SGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 47.2 bits (113), Expect = 3e-08
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F HQRSH+GE+P +
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 34.8 bits (81), Expect = 9e-04
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P+KC + C K + S H ++H
Sbjct: 1 GSSGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-13
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C K F+ +S A HQR H +P
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 46.4 bits (111), Expect = 6e-08
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F++ +L HQR HTG +P +
Sbjct: 18 CGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 33.3 bits (77), Expect = 0.004
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K +T S L H + H
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C K F ++S ++HQR H +P
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F L HQR HTGE+P +
Sbjct: 18 CGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.8 bits (146), Expect = 4e-13
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE PY C C K FS HQ+TH
Sbjct: 3 SGSSGTGENPYECCE--CGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 49.4 bits (119), Expect = 4e-09
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSC 40
C + C K FSR + L HQ++H+G+ S
Sbjct: 15 CCE---CGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 30.2 bits (69), Expect = 0.043
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ PY+C C K ++ L H K H
Sbjct: 2 SSGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 5e-13
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+P CT C KAF S HQRTH D +
Sbjct: 3 SGSSGTGEKPCKCTE--CGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 48.3 bits (116), Expect = 1e-08
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAF L +HQR+H ++ +
Sbjct: 18 CGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 5e-13
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+P+ C C KAFS+ +H+R H +P
Sbjct: 3 SGSSGTGEKPFDCID--CGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C C KAFS L H+R HTGE+P +
Sbjct: 15 CID---CGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 4e-04
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P+ C C K ++D L +H + H
Sbjct: 1 GSSGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 59.8 bits (146), Expect = 5e-13
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+ Y C C K FS +S ++HQ+ H +P
Sbjct: 3 SGSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-08
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K FSR L HQ+ HTGE+P +
Sbjct: 18 CGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.003
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + YKC C K ++ S L +H K H
Sbjct: 1 GSSGSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 59.8 bits (146), Expect = 6e-13
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C KAFS ++ +HQR H +P
Sbjct: 3 SGSSGTGEKPYECKE--CGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAFS+ +L HQR HTGE+P +
Sbjct: 17 ECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.003
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C K C K ++ + L +H + H
Sbjct: 1 GSSGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 6e-13
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C + C KAF SS +H H RP
Sbjct: 3 SGSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 46.4 bits (111), Expect = 5e-08
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAF +L H H+GERP +
Sbjct: 18 CGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC + C K + S L +H H
Sbjct: 1 GSSGSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 7e-13
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C K F +S A+HQ H +P
Sbjct: 3 SGSSGTGEKPYKCHE--CGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-07
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F R +L HQ HTGE+P +
Sbjct: 18 CGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 32.4 bits (75), Expect = 0.007
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K + S L +H H
Sbjct: 1 GSSGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 7e-13
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+P+ C + C K+F S +H H +P
Sbjct: 3 SGSSGTGEKPFKC--DICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 45.9 bits (110), Expect = 8e-08
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K+F L H HT E+P +
Sbjct: 18 CGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.004
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P+KC C K + S L +H+ H
Sbjct: 1 GSSGSSGTGEKPFKC--DICGKSFCGRSRLNRHSMVH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 8e-13
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+P+ C E C K F+ +S HQR H +P
Sbjct: 3 SGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 6e-08
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F++ L HQR HTGE+P +
Sbjct: 18 CGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 9e-04
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P+KC + C KR+T S L H + H
Sbjct: 1 GSSGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 8e-13
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GERPY C C K F S +H + HF +
Sbjct: 3 SGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 48.7 bits (117), Expect = 9e-09
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F R +L H + H E+ +
Sbjct: 18 CGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 31.3 bits (72), Expect = 0.019
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ RPY C C K + S L +H K H
Sbjct: 1 GSSGSSGSGERPYGC--NECGKNFGRHSHLIEHLKRH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 8e-13
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PYSC C KAF S+ +H R H
Sbjct: 3 SGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 45.2 bits (108), Expect = 1e-07
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
C+ C KAF +L H R HT E +
Sbjct: 15 CNV---CGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 32.9 bits (76), Expect = 0.005
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C C K + + L +H + H
Sbjct: 1 GSSGSSGTGEKPYSC--NVCGKAFVLSAHLNQHLRVH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 8e-13
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C K F+ +S A+H+ H +P
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F++ +L H+ HTGE+P +
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K +T S L +H H
Sbjct: 1 GSSGSSGTGEKPYKC--NECGKVFTQNSHLARHRGIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 9e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C K F+ +S A+H+R H +P
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F++ +L H+R HTG +P +
Sbjct: 18 CGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K +T S L +H + H
Sbjct: 1 GSSGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 9e-13
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TG++PY C C K F+ +S A+H+ H +P
Sbjct: 3 SGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 2e-07
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F++ +L H+ HTGE+P +
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.014
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K +T S L +H H
Sbjct: 1 GSSGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 9e-13
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+PY C C KAF + +H+R H RP
Sbjct: 3 SGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 46.7 bits (112), Expect = 5e-08
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAF R +L H+R HTG RP +
Sbjct: 18 CGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 32.5 bits (75), Expect = 0.008
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K + + L +H + H
Sbjct: 1 GSSGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 9e-13
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+PY C C K F+ +S +H+ H +P
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 45.9 bits (110), Expect = 9e-08
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F++ +L H+ HTGE+P +
Sbjct: 18 CGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-12
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+P+ C + C FS S KH R+H T P
Sbjct: 3 SGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 45.3 bits (108), Expect = 1e-07
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSC 40
C FS +L H RSH P
Sbjct: 17 ECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 38.3 bits (90), Expect = 6e-05
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P++C K C ++ SL KH ++H
Sbjct: 1 GSSGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-12
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S GE+PY C+ C K+FS S +H TH +P
Sbjct: 3 SGSSGEGEKPYQCSE--CGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 46.8 bits (112), Expect = 5e-08
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K+FS L H +HT E+P +
Sbjct: 18 CGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 30.2 bits (69), Expect = 0.045
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K ++ L +H H
Sbjct: 1 GSSGSSGEGEKPYQC--SECGKSFSGSYRLTQHWITH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 59.1 bits (144), Expect = 1e-12
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+PY C C KAF S H+RTH
Sbjct: 3 SGSSGSGEKPYECN--ECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSC 40
C++ C KAF L +H+R+H G S
Sbjct: 15 CNE---CGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K + S L H + H
Sbjct: 1 GSSGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-12
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+P+ C C K F+ +S HQR H +P
Sbjct: 3 SGSSGSGEKPFQCEE--CGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 7e-08
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F++ +L HQR HTGE+P +
Sbjct: 18 CGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P++C + C KR+T S L H + H
Sbjct: 1 GSSGSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 1e-12
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S GE+ + C C FS +S HQ H +P
Sbjct: 3 SGSSGMGEKTWKCRE--CDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCT 41
C FS+ +L++HQ H GE+P +
Sbjct: 17 ECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 58 HQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + +KC C ++ SSLR H H
Sbjct: 3 SGSSGMGEKTWKCRE--CDMCFSQASSLRLHQNVH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-12
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+PY C C K F+ +S H R H +P
Sbjct: 3 SGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 45.9 bits (110), Expect = 7e-08
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F++ +L H R HTGE+P +
Sbjct: 18 CGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.007
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC C K +T S L H + H
Sbjct: 1 GSSGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-12
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+P+ C + C KAF + A H R H +P
Sbjct: 3 SGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-08
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCT 41
C KAF + +L H R HTGE+P +
Sbjct: 17 ECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P+KC K C K + L H + H
Sbjct: 1 GSSGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-12
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S TGE+P+ C C K+++ +HQR H +P
Sbjct: 3 SGSSGTGEKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 7e-08
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K++++ +L HQR HTGE+P +
Sbjct: 18 CGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +P+KC C K Y L +H + H
Sbjct: 1 GSSGSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 57.9 bits (141), Expect = 3e-12
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S G PY C+ C K+FS HQR H +P
Sbjct: 3 SGSSGAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 49.5 bits (119), Expect = 4e-09
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
CSQ C K+FS L +HQR HT E+P +
Sbjct: 15 CSQ---CEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 32.5 bits (75), Expect = 0.006
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ PYKC C K ++ L H + H
Sbjct: 1 GSSGSSGAGVNPYKC--SQCEKSFSGKLRLLVHQRMH 35
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 58.6 bits (142), Expect = 3e-12
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT---RPYKCMYKGCTKRYTDPSSLRKH 88
+G C C + HQR H +T + C + C KR+ P S+ H
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAH 57
Query: 89 AKNH 92
Sbjct: 58 RSKS 61
Score = 58.2 bits (141), Expect = 5e-12
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 8/67 (11%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHT---GERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
C C + +L HQR H + C + C K F A H+
Sbjct: 8 LQCEI---CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSH 62
Query: 64 DTRPYKC 70
Sbjct: 63 PALLLAP 69
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 57.5 bits (140), Expect = 4e-12
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 29 QRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
+GE PY C+ C KAF+ HQRTH
Sbjct: 2 SSGSSGENPYECSE--CGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 49.8 bits (120), Expect = 3e-09
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSC 40
CS+ C KAF+R + L HQR+H GE S
Sbjct: 13 CSE---CGKAFNRKDQLISHQRTHAGESGPSS 41
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 5e-12
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GERP+ C C K F S A H R H +
Sbjct: 3 SGSSGSGERPFKCNE--CGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 46.4 bits (111), Expect = 7e-08
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F R +L H R H+ E+ +
Sbjct: 18 CGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 30.6 bits (70), Expect = 0.032
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ RP+KC C K + S L H + H
Sbjct: 1 GSSGSSGSGERPFKC--NECGKGFGRRSHLAGHLRLH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 5e-12
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +G++PY C C K F +H+R H R
Sbjct: 3 SGSSGSGKKPYECKE--CRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 46.4 bits (111), Expect = 6e-08
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSC 40
C K F ++ +L H+R HTGER
Sbjct: 17 ECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 31.7 bits (73), Expect = 0.015
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C K C K + L +H + H
Sbjct: 1 GSSGSSGSGKKPYEC--KECRKTFIQIGHLNQHKRVH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 57.2 bits (139), Expect = 5e-12
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQR-THFDTRPYKC 70
S TG++PY C C KAF ++ +H R H +P
Sbjct: 3 SGSSGTGKKPYECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 42.6 bits (101), Expect = 2e-06
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRS-HTGERPYSCT 41
C + C KAF + +L H R HTGE+P +
Sbjct: 15 CIE---CGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 34.5 bits (80), Expect = 0.001
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKH 88
+ +PY+C C K + +SL +H
Sbjct: 1 GSSGSSGTGKKPYEC--IECGKAFIQNTSLIRH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 57.2 bits (139), Expect = 6e-12
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S GER + C C K F +S+ +H+R H +P
Sbjct: 3 SGSSGHGERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-08
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F + N H+R HTGE+P +
Sbjct: 18 CGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ R ++C C K + S+ +H + H
Sbjct: 1 GSSGSSGHGERGHRC--SDCGKFFLQASNFIQHRRIH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 55.7 bits (135), Expect = 2e-11
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
S GE+PY C C KAFS H R H + P
Sbjct: 2 SSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 45.3 bits (108), Expect = 1e-07
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYS 39
C Q C KAFS+ +L +H R HTG P S
Sbjct: 14 CDQ---CGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 33.3 bits (77), Expect = 0.003
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 58 HQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY+C C K ++ SL H + H
Sbjct: 2 SSGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVH 34
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 54.5 bits (132), Expect = 6e-11
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 29 QRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
+GE+P+ C+ C KAFS+ S HQ+TH + +P
Sbjct: 2 SSGSSGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 50.2 bits (121), Expect = 2e-09
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCT 41
CS C KAFS L +HQ++H E+P +
Sbjct: 13 CSC---CEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 53.3 bits (129), Expect = 1e-10
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
S GE+PY C E C F + H H + P
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 46.7 bits (112), Expect = 4e-08
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYS 39
C F ++ +L+ H HTG P S
Sbjct: 16 TCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 33.3 bits (77), Expect = 0.003
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 58 HQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PYKC + C R+ + LR H H
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIH 34
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 52.6 bits (127), Expect = 3e-10
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S + + + C C + F+ S +HQR H +P
Sbjct: 3 SGSSGSSTKSHQCHE--CGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 6e-07
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C + F+ +L HQR HTGE+P +
Sbjct: 18 CGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.072
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ T+ ++C C + +T S L +H + H
Sbjct: 1 GSSGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 52.1 bits (126), Expect = 4e-10
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
S GE+PY C C F + H R H + P
Sbjct: 2 SSGSSGGEKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 47.9 bits (115), Expect = 1e-08
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYS 39
C F L+ LK H R HTG P S
Sbjct: 16 ICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 32.9 bits (76), Expect = 0.005
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 58 HQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ +PY C C R+ +L+ H + H
Sbjct: 2 SSGSSGGEKPYPCEI--CGTRFRHLQTLKSHLRIH 34
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 51.8 bits (125), Expect = 5e-10
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S +GE+ ++C + C K F S HQR H +
Sbjct: 3 SGSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 43.3 bits (103), Expect = 8e-07
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCT 41
C K F + L+IHQR H GE+ +
Sbjct: 18 CGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 30.6 bits (70), Expect = 0.036
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + + C C K + S+LR H + H
Sbjct: 1 GSSGSSGSGEKSHTC--DECGKNFCYISALRIHQRVH 35
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 51.8 bits (125), Expect = 6e-10
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 13 PHCAKAFSRLENLKIH-QRSHTGERPYSCTYEGCHKAFSN 51
C K FSR ++L H ++ HT ERP+ C + S+
Sbjct: 16 QSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPSS 53
Score = 49.9 bits (120), Expect = 3e-09
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKH-QRTHFDTRPYKCMYKGCTKRYTD 81
S + +PY C C K FS H ++ H RP+KC +
Sbjct: 3 SGSSGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPSS 53
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 50.3 bits (121), Expect = 2e-09
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S T + Y+C C KAF+ +HQ+ H
Sbjct: 3 SGSSGTDSKSYNCNE--CGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 39.5 bits (93), Expect = 2e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSC 40
C KAF+R+ +L HQ+ HT + S
Sbjct: 17 ECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.8 bits (86), Expect = 2e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ D++ Y C C K +T L +H K H
Sbjct: 1 GSSGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 49.2 bits (118), Expect = 6e-09
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYK 69
S GE PY C C K+F+ A HQR+ + P
Sbjct: 2 SSGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 46.9 bits (112), Expect = 3e-08
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYS 39
+LC Q C K+F++ +L +HQRS + P S
Sbjct: 12 YLCGQ---CGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 29.2 bits (66), Expect = 0.099
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 58 HQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
+ PY C C K +T SL H ++ +
Sbjct: 2 SSGSSGGETPYLC--GQCGKSFTQRGSLAVHQRSCS 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 47.8 bits (113), Expect = 2e-08
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
C + LK H R+HT RPY C C+ +F + KH ++
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSK 52
Score = 40.1 bits (93), Expect = 2e-05
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 38 YSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHNHD 95
Y C E C S KH RTH D RPY C C + +L KH K+ H
Sbjct: 2 YIC--EECGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHS 55
Score = 28.9 bits (64), Expect = 0.16
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 14 HCAKAFSRLENLKIHQRSHTGER 36
+C +F NL H +S +
Sbjct: 34 YCNFSFKTKGNLTKHMKSKAHSK 56
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 47.3 bits (113), Expect = 3e-08
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
R TG +P+ C C ++FS S A H++ H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 29.2 bits (66), Expect = 0.089
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 58 HQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
R +P++C C + ++ L H K H
Sbjct: 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (63), Expect = 0.24
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 13 PHCAKAFSRLENLKIHQRSH 32
P C ++FSR ++L +H++ H
Sbjct: 15 PDCDRSFSRSDHLALHRKRH 34
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 48.4 bits (115), Expect = 3e-08
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 15 CAKAFSRLENLKIH-QRSHTGERP---YSCTYEGCH---KAFSNSSDRAKHQRTHFDTRP 67
C + FS + L H H G + C +E C K+F H R H +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS 90
Query: 68 YKC 70
Sbjct: 91 GPS 93
Score = 41.5 bits (97), Expect = 1e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSCT 41
P K+F L H R HTGE+ +
Sbjct: 66 PREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 40.3 bits (94), Expect = 3e-05
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 7/69 (10%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKH-QRTHFDTRP---YKCMYKGCTKRYTDPSSLRK 87
+ + C + FS + H H + C ++ C R +
Sbjct: 20 DEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP-REGKSFKAKY 76
Query: 88 HAKNHNHDH 96
NH H
Sbjct: 77 KLVNHIRVH 85
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 46.8 bits (112), Expect = 4e-08
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 29 QRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
+G+R Y C C K+F H+R H + P
Sbjct: 2 SSGSSGQRVYECQE--CGKSFRQKGSLTLHERIHTGSGPS 39
Score = 45.3 bits (108), Expect = 1e-07
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYS 39
C + C K+F + +L +H+R HTG P S
Sbjct: 13 CQE---CGKSFRQKGSLTLHERIHTGSGPSS 40
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.5 bits (110), Expect = 6e-08
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSC 40
C K F + +L H+ SH+GE+PYS
Sbjct: 17 ICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 39.9 bits (93), Expect = 2e-05
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 29 QRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
S + +C C K F + +H+ +H +PY
Sbjct: 4 GSSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 25.3 bits (55), Expect = 2.6
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 59 QRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
+ + C C K + D L +H +H+
Sbjct: 4 GSSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHS 36
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 47.0 bits (111), Expect = 8e-08
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 24 NLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPS 83
+ Q+ H G+R C+ C F S ++ + C + C K +
Sbjct: 5 SSGKRQKIHLGDRSQKCSK--CGIIFIRRSTLSRR-------KTPMC--EKCRKDSCQEA 53
Query: 84 SLRKHAKNH 92
+L K N
Sbjct: 54 ALNKDEGNE 62
Score = 39.6 bits (92), Expect = 3e-05
Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 9/55 (16%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPY 68
C F + + + + C E C K + K + +
Sbjct: 23 KCGIIFI-------RRSTLSRRKTPMC--EKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 32.3 bits (73), Expect = 0.017
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 51 NSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKH 88
+S K Q+ H R KC C + S+L +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSRR 37
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 45.8 bits (109), Expect = 9e-08
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 30 RSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+GE+PYSC C + FS+++ +HQ+ H
Sbjct: 3 SGSSGEKPYSCA--ECKETFSDNNRLVQHQKMH 33
Score = 40.0 bits (94), Expect = 1e-05
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSC 40
C + FS L HQ+ HT + S
Sbjct: 16 CKETFSDNNRLVQHQKMHTVKSGPSS 41
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 45.9 bits (108), Expect = 4e-07
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 8/91 (8%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRS--HTGERPYSCTYEG-CHKAFSNSSDRAKHQRTHF 63
F C C+ A+ L L +H H + + + + +
Sbjct: 20 FRCKD---CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 64 DTRPYKCMYKGCTKRYTDPSSLRKHAKNHNH 94
+ KCMY C + L H H
Sbjct: 77 AQKVLKCMY--CGHSFESLQDLSVHMIKTKH 105
Score = 43.2 bits (101), Expect = 4e-06
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 5/81 (6%)
Query: 20 SRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRT--HFDTRPYKCMYKG-CT 76
S + K++ TG + C C A+ + H H+ ++
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKR 59
Query: 77 KRYTDPSSLRKHAKNHNHDHL 97
SL + + +
Sbjct: 60 WSKPRKRSLLEMEGKEDAQKV 80
Score = 35.9 bits (82), Expect = 0.002
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 9 CSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKH--QRTHFDTR 66
+ R +L + ++ C Y C +F + D + H + H+
Sbjct: 52 TDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMY--CGHSFESLQDLSVHMIKTKHYQKV 109
Query: 67 PYK 69
Sbjct: 110 SGP 112
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 43.5 bits (103), Expect = 6e-07
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
F+C C +AF+R E+LK H RSHT E+
Sbjct: 3 FVC---EVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.8 bits (65), Expect = 0.098
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
R + C C +AF+ +H R+H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSH 25
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 42.5 bits (100), Expect = 1e-06
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
S GE P+ C+ C + F+ + +H+RTH
Sbjct: 3 SGSSGAGENPFKCSK--CDRVFTQRNYLVQHERTH 35
Score = 34.8 bits (80), Expect = 9e-04
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYS 39
F CS+ C + F++ L H+R+H + S
Sbjct: 13 FKCSK---CDRVFTQRNYLVQHERTHARKSGPS 42
Score = 29.1 bits (65), Expect = 0.10
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ P+KC C + +T + L +H + H
Sbjct: 1 GSSGSSGAGENPFKC--SKCDRVFTQRNYLVQHERTH 35
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 41.8 bits (99), Expect = 2e-06
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
RP+ CT+ C K F+ S + +H+RTH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 41.1 bits (97), Expect = 4e-06
Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
F+C+ + +C K F+R + L+ H+R+HTGE+
Sbjct: 3 FMCT-WSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.0 bits (71), Expect = 0.018
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
RP+ C + C KR+T L++H + H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 40.4 bits (95), Expect = 7e-06
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
+C C K + + +L+ H R HTGER
Sbjct: 9 HICH-IQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 38.1 bits (89), Expect = 6e-05
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
++ + C +GC K + +S H R H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 34.3 bits (79), Expect = 0.001
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + C +GC K Y S LR H + H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 40.3 bits (93), Expect = 7e-05
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
P C FS +LK H R E C C K F+++ H
Sbjct: 78 PLCLMPFSSSVSLKQHIRYT--EHTKVCPV--CKKEFTSTDSALDHVCKK 123
Score = 39.5 bits (91), Expect = 1e-04
Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 7/80 (8%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKG 74
+ + + C C FS+S +H R C
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPL--CLMPFSSSVSLKQHIRYT--EHTKVCPV-- 105
Query: 75 CTKRYTDPSSLRKHA-KNHN 93
C K +T S H K HN
Sbjct: 106 CKKEFTSTDSALDHVCKKHN 125
Score = 35.3 bits (80), Expect = 0.004
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 10 SQFPHCAKAFSRLENLKIHQRSHTGERPYSCTYEGC--HKAFSNSSDRAKHQRTHFDTRP 67
S + E + HQ + +R + + + S
Sbjct: 15 SNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQ 74
Query: 68 YKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTP 99
+ C C ++ SL++H + H + P
Sbjct: 75 FVCPL--CLMPFSSSVSLKQHIRYTEHTKVCP 104
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 39.5 bits (91), Expect = 9e-05
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYK 73
C S L H+R C Y C F + + +H+ + + C+
Sbjct: 21 LCNAKLSSLLEQGSHERLC--RNAAVCPY--CSLRFFSPELKQEHESKC-EYKKLTCLE- 74
Query: 74 GCTKRYTDPSSLRKHAKN-HNHDHLTPAK 101
C + + S+ +H HN +++ P
Sbjct: 75 -CMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
Score = 30.3 bits (67), Expect = 0.14
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRT 61
P+C+ F E + H S + +C C + F +S +HQ
Sbjct: 46 PYCSLRFFSPELKQEH-ESKCEYKKLTCLE--CMRTFKSSFSIWRHQVE 91
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 37.3 bits (86), Expect = 1e-04
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFD 64
+RPYSC + GC KAF + D +H+++H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 30.7 bits (69), Expect = 0.022
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
RPY C + GC K + L +H K+H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 28.4 bits (63), Expect = 0.18
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHT 33
+ C P C KAF R +L H++SH
Sbjct: 4 YSCD-HPGCDKAFVRNHDLIRHKKSHQ 29
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 36.4 bits (84), Expect = 3e-04
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
F C FP C K F R N++ H ++H +R
Sbjct: 19 FEC-LFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 35.6 bits (82), Expect = 5e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
++ + C + GC K F + H +TH + R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 32.9 bits (75), Expect = 0.005
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNHNHD 95
+ ++C++ GCTK + ++R H + H D
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 31.6 bits (71), Expect = 0.011
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT 65
+G+RP+ C C AF+ ++ A+H + H DT
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHTDT 33
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.8 bits (79), Expect = 0.014
Identities = 6/40 (15%), Positives = 10/40 (25%), Gaps = 2/40 (5%)
Query: 26 KIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT 65
+ + Y C C + D H +H
Sbjct: 169 VGLPPTASSGHGYQCHV--CSAVLFSPLDLDAHVASHGLH 206
Score = 32.9 bits (74), Expect = 0.066
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 6 DFLCSQFPHCAKAFSRLENLKIHQRSH 32
+ C C+ +L H SH
Sbjct: 180 GYQCHV---CSAVLFSPLDLDAHVASH 203
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 31.3 bits (70), Expect = 0.016
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+PY C++ C +++ DP +L++H + H
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIH 26
Score = 28.6 bits (63), Expect = 0.15
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 14 HCAKAFSRLENLKIHQRSHTGER 36
HC + F+ L+ H R HTGE+
Sbjct: 8 HCQRQFADPGALQRHVRIHTGEK 30
Score = 27.4 bits (60), Expect = 0.36
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+PY C + C + F++ +H R H
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIH 26
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 30.8 bits (69), Expect = 0.040
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 38 YSCTYEGCHKAFSNSSDRAKH-------QRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAK 90
C ++ C ++ S+ D +H Q P C ++ C D +S+ H
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 91 NH 92
Sbjct: 62 AQ 63
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 28.9 bits (64), Expect = 0.11
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
++P+ CT GC + F+N A H+ H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 27.7 bits (61), Expect = 0.33
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 64 DTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
D +P+ C GC +R+T+ L H H
Sbjct: 3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (62), Expect = 0.24
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 31 SHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
S E+ + C C K FS S +H+R H
Sbjct: 6 SGQKEKCFKC--NKCEKTFSCSKYLTQHERIH 35
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 27.4 bits (60), Expect = 0.40
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 15 CAKAFSRLENLKIHQRSHTGER 36
C KAF++ +L H R HTGE+
Sbjct: 8 CGKAFTQASSLIAHVRQHTGEK 29
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 27.6 bits (60), Expect = 0.47
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+GE+PYSC C F + H R+H
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSH 33
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.7 bits (66), Expect = 0.57
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 141 LMESYELQTVTHDHMLEYI-----PYDTI 164
++ EL T +++ P++ I
Sbjct: 147 IVSGLELSD-TKQKGKKFLVIAYEPFENI 174
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome
BC1, membrane protein, heme protein, rieske iron
protein, cytochrome B, complex III; HET: BHG HEM HEC
SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB:
1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H*
1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H*
2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Length = 78
Score = 27.5 bits (61), Expect = 0.98
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 9 CSQFPHCAKAFSRLE--NLKIHQRSHTGERPYSCTYE 43
C Q C KA RLE + ++ RS T E CT E
Sbjct: 24 CEQLEKCVKARERLELCDERVSSRSQTEE---DCTEE 57
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 28.4 bits (62), Expect = 1.4
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 68 YKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLN 106
Y C KGCTK + + KH K + + +T +
Sbjct: 305 YGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVRE 343
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 1.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGER 36
P C+ A + NL +H R HTGE+
Sbjct: 13 PQCSYASAIKANLNVHLRKHTGEK 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.6
Identities = 28/180 (15%), Positives = 50/180 (27%), Gaps = 61/180 (33%)
Query: 45 CHKAFSNSSDRAKHQR---THFDTRPYKCMY--KGCTKRYTDP--SSLRKHAKNHNHDHL 97
C++A+ N+S + + P M T+ + H +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 98 T-------------PAKMRKLNY------AKPGD-----------IVPSVRNVNSSVP-- 125
+ P + LN A G + S R + + P
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 126 ---LNP--DFTVFSCGEPNLLMESYELQTVTHDHMLEYIP-YDTIHATGNISRNLQDVPD 179
L P D + N+ + ++Q IP YDT G +L+ +
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQ----------IPVYDT--FDG---SDLRVLSG 473
>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein,
complex III subunit VIII...; cytochrome BC1, membrane
protein, heme protein, rieske iron protein; HET: HEM
WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB:
3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H*
3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*
Length = 77
Score = 26.8 bits (59), Expect = 1.7
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 9 CSQFPHCAKAFSRLE--NLKIHQRSHTGERPYSCTYE 43
C Q C KA RLE + ++ RSHT E CT E
Sbjct: 23 CEQTEKCVKARERLELCDARVSSRSHTEE---QCTEE 56
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type
zinc finger, KIAA0530, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 73
Score = 26.5 bits (57), Expect = 1.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQRT 61
++ RPY C ++GC AF+ + H +
Sbjct: 22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQA 51
Score = 25.7 bits (55), Expect = 3.8
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRK 104
RPY+C+++GC +T +L H + + L
Sbjct: 26 RPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEV 64
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.9 bits (61), Expect = 2.0
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
K + IH+ GE+ E + N D
Sbjct: 186 YMKRLHSMSQETIHRNLARGEKRLQR--EKSEQVLDNPEDLRGPIHLS 231
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 2.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 14 HCAKAFSRLENLKIHQRSHTGER 36
+C K F +L+ H R HT E+
Sbjct: 14 YCNKVFKFKHSLQAHLRIHTNEK 36
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.9 bits (54), Expect = 2.9
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 45 CHKAFSNSSDRAKHQRTHFDTRPYK 69
C K F S +KH H +
Sbjct: 8 CPKRFMRSDHLSKHITLHELLGEER 32
Score = 24.5 bits (53), Expect = 4.4
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 5 FDFLCSQFPHCAKAFSRLENLKIHQRSHTGERP 37
+ F C P C K F R ++L H H
Sbjct: 1 YKFAC---PECPKRFMRSDHLSKHITLHELLGE 30
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.2 bits (54), Expect = 3.0
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 10 SQFPHCAKAFSRLENLKIHQRSHTGE 35
S+ C K F L HQ H GE
Sbjct: 13 SECQECGKIFRHSSLLIEHQALHAGE 38
>2czr_A TBP-interacting protein; tata-binding protein (TBP),
hyperthermophilic archaeon, Zn-finger motif,
transcription; 2.30A {Thermococcus kodakarensis} SCOP:
c.52.4.1
Length = 226
Score = 26.9 bits (59), Expect = 3.5
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 68 YKCMYKGCTKRYTDPSSLRKHAKNHNHDH 96
YKC G +Y D +L H + H
Sbjct: 155 YKCEECG---KYVDIENLEAHLREHGIKL 180
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown
function; HET: HEB; NMR {Synechococcus SP}
Length = 123
Score = 26.4 bits (58), Expect = 4.3
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 70 CMYKGCTKRYTDPSSLRKHAKNHNHDHLTPA 100
G T R+ S H + LT
Sbjct: 51 TYAFGGTDRFPGRSMRAAHQDLVENAGLTDV 81
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.1 bits (52), Expect = 4.7
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 45 CHKAFSNSSDRAKHQRTHFDTR 66
C K F S H H + +
Sbjct: 8 CPKRFMRSDHLTLHILLHENKK 29
Score = 23.7 bits (51), Expect = 6.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 5 FDFLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
+ F C P C K F R ++L +H H ++
Sbjct: 1 YKFAC---PECPKRFMRSDHLTLHILLHENKK 29
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN
protein structure initiative, midwest center for
structural genomics; 2.50A {Pseudomonas syringae PV}
Length = 182
Score = 26.6 bits (58), Expect = 5.2
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 5 FDFLCSQFPHCAKAFSRLENLKIHQ 29
+ C P KAF +L++L
Sbjct: 22 LEPTC---PFSVKAFFKLDDLLAQA 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 5.9
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 33/134 (24%)
Query: 8 LCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTY--------EGCHKAFSNSSDRAKHQ 59
S+ H + R+ +++ R +PY AF+ S
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------ 266
Query: 60 RTHFDTRPYKCMYKGCTKRYTD--PSSLRKHAK-NHNHDHLTPAKMRKL--NYA--KPGD 112
+ TR K+ TD ++ H +H+ LTP +++ L Y +P D
Sbjct: 267 KILLTTR---------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 113 IVPSVRNVNSSVPL 126
+ V N P
Sbjct: 318 LPREVLTTN---PR 328
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba
oxygen binding, hexacoordinate, truncated, oxygen
storage-T complex; HET: FLC HEM; 1.68A {Synechocystis
SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A*
2hz3_A* 2hz2_A*
Length = 124
Score = 25.6 bits (56), Expect = 8.2
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 70 CMYKGCTKRYTDPSSLRKHAKNHNHDHLTPA 100
G T +Y H + + L
Sbjct: 52 TYAFGGTDKYDGRYMREAHKELVENHGLNGE 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.422
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,014,032
Number of extensions: 166137
Number of successful extensions: 1171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 854
Number of HSP's successfully gapped: 461
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)