RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9954
(196 letters)
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 50.2 bits (120), Expect = 6e-10
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+PY C GCTKRYTDPSSLRKH K
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 49.9 bits (119), Expect = 8e-10
Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQ-RTHFD 64
+PY C +EGC KAFSN+SDRAKHQ RTH +
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN 30
Score = 29.5 bits (66), Expect = 0.020
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKH 88
+PY C ++GC+K +++ S KH
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKH 23
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 50.1 bits (120), Expect = 8e-10
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGERPYSCTY 42
F C + P C K+F+ ++LK H + H+ R Y C +
Sbjct: 2 FSCPE-PACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 47.4 bits (113), Expect = 9e-09
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 38 YSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMY 72
+SC C K+F+ +H + H DTR Y C +
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 28.9 bits (65), Expect = 0.046
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 68 YKCMYKGCTKRYTDPSSLRKHAKNH 92
+ C C K + L++H K H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 46.9 bits (112), Expect = 9e-09
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+RPYSC + GC KAF + D +H+++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 39.2 bits (92), Expect = 8e-06
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
+ C P C KAF R +L H++SH +
Sbjct: 4 YSCD-HPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 34.2 bits (79), Expect = 4e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
RPY C + GC K + L +H K+H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 46.6 bits (111), Expect = 1e-08
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
R TG +P+ C C ++FS S A H++ H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 33.6 bits (77), Expect = 9e-04
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 58 HQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
R +P++C C + ++ L H K H
Sbjct: 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
Score = 26.6 bits (59), Expect = 0.24
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 14 HCAKAFSRLENLKIHQRSHTG 34
C ++FSR ++L +H++ H
Sbjct: 16 DCDRSFSRSDHLALHRKRHML 36
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 44.9 bits (107), Expect = 6e-08
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
H+GE+PY C C KAFS SS +HQR H
Sbjct: 2 HSGEKPYGCVE--CGKAFSRSSILVQHQRVH 30
Score = 37.6 bits (88), Expect = 3e-05
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGE 35
C KAFSR L HQR HTGE
Sbjct: 11 VECGKAFSRSSILVQHQRVHTGE 33
Score = 28.7 bits (65), Expect = 0.049
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 62 HFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
H +PY C C K ++ S L +H + H
Sbjct: 2 HSGEKPYGC--VECGKAFSRSSILVQHQRVH 30
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 44.7 bits (106), Expect = 7e-08
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 30 RSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT 65
R+HTGE+PY+C++ C K F H + + D
Sbjct: 1 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDP 34
Score = 32.3 bits (74), Expect = 0.002
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGE 35
HC K F + + L +H + +
Sbjct: 12 SHCDKTFRQKQLLDMHFKRYHDP 34
Score = 32.3 bits (74), Expect = 0.002
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 60 RTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
RTH +PY C C K + L H K ++
Sbjct: 1 RTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYH 32
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 44.3 bits (105), Expect = 1e-07
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
RPY C ++GC+K F+ S++ H TH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 36.9 bits (86), Expect = 5e-05
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHT 33
++C F C K F++ NLK H +H
Sbjct: 3 YVCP-FDGCNKKFAQSTNLKSHILTHA 28
Score = 35.4 bits (82), Expect = 2e-04
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
RPY C + GC K++ ++L+ H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 44.7 bits (105), Expect = 1e-07
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
++ Y C C K+F++ S R +H H RPY C C K++ L H K H
Sbjct: 1 DKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 44.7 bits (105), Expect = 1e-07
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 14 HCAKAFSRLENLKIHQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
C K+F+ H H G RPY C C K F H + H
Sbjct: 7 QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 29.7 bits (66), Expect = 0.033
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 1 MTTIFDFLCSQFPHCAKAFSRLENLKIHQRSH 32
M+ C K F +L H + H
Sbjct: 22 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 24.6 bits (53), Expect = 2.2
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNHNHDH 96
+ Y C C K +T S +H H
Sbjct: 2 KLYPCQ---CGKSFTHKSQRDRHMSMHLGLR 29
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 44.2 bits (104), Expect = 1e-07
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
++ + C + GC K F + H +TH
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 31.4 bits (71), Expect = 0.006
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 57 KHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ ++C++ GCTK + ++R H + H
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 31.1 bits (70), Expect = 0.008
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGER 36
FP C K F R N++ H ++H +R
Sbjct: 23 FPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 44.0 bits (104), Expect = 1e-07
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 28 HQRSHTGERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+ R Y C + C K+FS+SSD +KH+RTH
Sbjct: 3 SEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTH 35
Score = 35.9 bits (83), Expect = 1e-04
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 56 AKHQRTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + + R YKC G ++ S L KH + H
Sbjct: 1 GRSEWQQRERRRYKCDECGK--SFSHSSDLSKHRRTH 35
Score = 30.1 bits (68), Expect = 0.017
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGE 35
C K+FS +L H+R+HTGE
Sbjct: 16 DECGKSFSHSSDLSKHRRTHTGE 38
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 43.5 bits (103), Expect = 2e-07
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
RPY+C E C + FS S+D +H R H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 38.1 bits (89), Expect = 2e-05
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTG 34
+ C C + FSR +L H R HTG
Sbjct: 3 YACPV-ESCDRRFSRSADLTRHIRIHTG 29
Score = 33.1 bits (76), Expect = 0.001
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
RPY C + C +R++ + L +H + H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 43.1 bits (102), Expect = 3e-07
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 13 PHCAKAFSRLENLKIH-QRSHTGERPYSC 40
C K FSR ++L H ++ HT ERP+ C
Sbjct: 9 QSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 40.4 bits (95), Expect = 3e-06
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 33 TGERPYSCTYEGCHKAFSNSSDRAKH-QRTHFDTRPYKC 70
+ +PY C C K FS H ++ H RP+KC
Sbjct: 1 SVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 26.5 bits (59), Expect = 0.32
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAK 90
+PY C + C K ++ P L H K
Sbjct: 4 KPYIC--QSCGKGFSRPDHLNGHIK 26
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 42.7 bits (101), Expect = 3e-07
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
RP+ CT+ C K F+ S + +H+RTH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 41.5 bits (98), Expect = 9e-07
Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGER 36
F+C+ + +C K F+R + L+ H+R+HTGE+
Sbjct: 3 FMCT-WSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.6 bits (80), Expect = 4e-04
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
RP+ C + C KR+T L++H + H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 42.3 bits (100), Expect = 6e-07
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+P+ CT+EGC K++S + H R+H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 41.2 bits (97), Expect = 1e-06
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
C+ C K++SRLENLK H RSHTGE
Sbjct: 3 HKCTF-EGCRKSYSRLENLKTHLRSHTGE 30
Score = 33.5 bits (77), Expect = 8e-04
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+P+KC ++GC K Y+ +L+ H ++H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 41.9 bits (99), Expect = 8e-07
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 30 RSHTGERPYSCTYEGCHKAFSNSSDRAKH-QRTH 62
R+H+GE+PY C CH F+ S H + H
Sbjct: 1 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKH 32
Score = 30.7 bits (70), Expect = 0.008
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 60 RTHFDTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
RTH +PY+C C R+T +++ H
Sbjct: 1 RTHSGEKPYECYI--CHARFTQSGTMKMHILQK 31
Score = 29.2 bits (66), Expect = 0.031
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGE 35
C F++ +K+H E
Sbjct: 12 YICHARFTQSGTMKMHILQKHTE 34
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 41.1 bits (97), Expect = 2e-06
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGER 36
C +AF+R E+LK H RSHT E+
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEK 29
Score = 34.9 bits (81), Expect = 2e-04
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
R + C C +AF+ +H R+H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSH 25
Score = 27.2 bits (61), Expect = 0.15
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
R + C + CT+ + L++H ++H
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSH 25
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 40.0 bits (94), Expect = 4e-06
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+P+ CT+EGC K FS + H R H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 38.5 bits (90), Expect = 1e-05
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
F C+ C K FS NL+ H R HTG+
Sbjct: 3 FQCTF-EGCGKRFSLDFNLRTHVRIHTGD 30
Score = 32.3 bits (74), Expect = 0.002
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+P++C ++GC KR++ +LR H + H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 39.4 bits (92), Expect = 6e-06
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 32 HTGERPYSCTYEGCHKAFSNSSDRAKHQRTHFDT 65
+G+RP+ C C AF+ ++ A+H + H DT
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHTDT 33
Score = 33.6 bits (77), Expect = 7e-04
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 12 FPHCAKAFSRLENLKIHQRSHTGE 35
C AF+ N H + HT
Sbjct: 10 CRICLSAFTTKANCARHLKVHTDT 33
Score = 23.2 bits (50), Expect = 4.9
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
RP+ C + C +T ++ +H K H
Sbjct: 6 RPFVC--RICLSAFTTKANCARHLKVH 30
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 37.7 bits (88), Expect = 2e-05
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGER 36
P C K F R ++L H ++H ++
Sbjct: 6 PECPKRFMRSDHLSKHIKTHQNKK 29
Score = 31.9 bits (73), Expect = 0.003
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+ ++C C K F S +KH +TH
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTH 25
Score = 26.2 bits (58), Expect = 0.32
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+ + C C KR+ L KH K H
Sbjct: 1 KKFAC--PECPKRFMRSDHLSKHIKTH 25
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 37.6 bits (88), Expect = 3e-05
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
++P+ C C + FS S H RTH
Sbjct: 1 QKPFQCRI--CMRNFSRSDHLTTHIRTH 26
Score = 36.0 bits (84), Expect = 8e-05
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 13 PHCAKAFSRLENLKIHQRSHTG 34
C + FSR ++L H R+HTG
Sbjct: 7 RICMRNFSRSDHLTTHIRTHTG 28
Score = 27.6 bits (62), Expect = 0.11
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+P++C + C + ++ L H + H
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTH 26
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 34.3 bits (78), Expect = 4e-04
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 67 PYKCMYKGCTKRYTDPSSLRKHAKNH 92
PY+C ++GC KR++ PS L++H K H
Sbjct: 3 PYECPHEGCDKRFSLPSRLKRHEKVH 28
Score = 31.2 bits (70), Expect = 0.005
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+ PY C +EGC K FS S +H++ H
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKVH 28
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 34.1 bits (79), Expect = 4e-04
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+PY C C KAFS +S HQR H
Sbjct: 1 KPYKC--LECGKAFSQNSGLINHQRIH 25
Score = 31.0 bits (71), Expect = 0.005
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 14 HCAKAFSRLENLKIHQRSHT 33
C KAFS+ L HQR HT
Sbjct: 7 ECGKAFSQNSGLINHQRIHT 26
Score = 25.6 bits (57), Expect = 0.42
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+PYKC C K ++ S L H + H
Sbjct: 1 KPYKC--LECGKAFSQNSGLINHQRIH 25
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 30.0 bits (67), Expect = 0.012
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 13 PHCAKAFSRLENLKIHQRSHTG 34
C K FSR + LK H R HTG
Sbjct: 5 EVCGKCFSRKDKLKTHMRCHTG 26
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 30.0 bits (67), Expect = 0.019
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 15 CAKAFSRLENLKIHQRSHTGERPYS 39
C K F + +L H+ SH+GE+PYS
Sbjct: 11 CGKIFRDVYHLNRHKLSHSGEKPYS 35
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 29.3 bits (65), Expect = 0.031
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTH 62
+P+ C EGC K F++ +H TH
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTH 27
Score = 25.8 bits (56), Expect = 0.54
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNH 92
+P+ C +GC K +T L +H+ H
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTH 27
Score = 23.1 bits (49), Expect = 5.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 11 QFPHCAKAFSRLENLKIHQRSHTGE 35
+ C K F+ L +L H +HTGE
Sbjct: 6 KEEGCEKGFTSLHHLTRHSLTHTGE 30
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 28.6 bits (64), Expect = 0.048
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTHF 63
E+P++C C + F+ S +R +H + H
Sbjct: 1 EKPFACDI--CGRKFARSDERKRHTKIHL 27
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 27.9 bits (62), Expect = 0.11
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 35 ERPYSCTYEGCHKAFSNSSDRAKHQRTH 62
++P+ CT GC + F+N A H+ H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 27.1 bits (60), Expect = 0.20
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 64 DTRPYKCMYKGCTKRYTDPSSLRKHAKNH 92
D +P+ C GC +R+T+ L H H
Sbjct: 3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 27.4 bits (60), Expect = 0.12
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 11 QFPHCAKAFSRLENLKIHQRSHTGER 36
+ P C K F LK+H R HTGE+
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.2 bits (60), Expect = 0.16
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 70 CMYKGCTKRYTDPSSLRKHAKNH 92
C +KGCTK + D S++RKH H
Sbjct: 4 CPHKGCTKMFRDNSAMRKHLHTH 26
Score = 26.5 bits (58), Expect = 0.31
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 39 SCTYEGCHKAFSNSSDRAKHQRTH 62
+C ++GC K F ++S KH TH
Sbjct: 3 ACPHKGCTKMFRDNSAMRKHLHTH 26
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 26.9 bits (59), Expect = 0.18
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
++CS F C A+++ L+ H HTGE
Sbjct: 4 YICS-FADCGAAYNKNWKLQAHLSKHTGE 31
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 26.2 bits (57), Expect = 0.31
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 7 FLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
F CS C + F R L++H SHTGE
Sbjct: 5 FTCSV---CQETFRRRMELRLHMVSHTGE 30
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.1 bits (57), Expect = 0.35
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 6 DFLCSQFPHCAKAFSRLENLKIHQRSHTGE 35
+C++ C KAF LK HQ HTGE
Sbjct: 2 VHVCAE---CGKAFVESSKLKRHQLVHTGE 28
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 25.8 bits (56), Expect = 0.40
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 11 QFPHCAKAFSRLENLKIHQRSHT 33
F +C KAF + LK+HQ SHT
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHT 27
Score = 25.1 bits (54), Expect = 0.79
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 38 YSCTYEGCHKAFSNSSDRAKHQRTH 62
Y C +E C KAF + HQ +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH 26
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 24.8 bits (54), Expect = 0.88
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 13 PHCAKAFSRLENLKIHQRSHTGER 36
C + LK H R+HT R
Sbjct: 5 EECGIRAKKPSMLKKHIRTHTDVR 28
Score = 22.1 bits (47), Expect = 9.4
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 68 YKCMYKGCTKRYTDPSSLRKHAKNH 92
Y C C R PS L+KH + H
Sbjct: 2 YICEE--CGIRAKKPSMLKKHIRTH 24
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 218
Score = 27.5 bits (61), Expect = 0.91
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 68 YKCMYKGCTKRYTDPSSLRKHAKNHNHDH 96
YKC G +Y D +L H + H
Sbjct: 147 YKCEECG---KYVDIENLEAHLREHGIKL 172
>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1
complex (Ubiquinol-cytochrome c reductase) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 66
Score = 25.5 bits (56), Expect = 1.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 9 CSQFPHCAKAFSRLE--NLKIHQRSHTGERPYSCTYE 43
C Q C KA RLE + ++ RS T E CT E
Sbjct: 12 CEQLEKCVKARERLELCDERVSSRSQTEE---DCTEE 45
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 25.0 bits (54), Expect = 1.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 75 CTKRYTDPSSLRKHAKNH 92
C K +TD + LR+H H
Sbjct: 12 CGKVFTDANRLRQHEAQH 29
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 24.7 bits (53), Expect = 2.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQR 60
RPY C ++GC AF+ + H +
Sbjct: 19 RPYRCVHQGCFAAFTIQQNLILHYQ 43
Score = 24.3 bits (52), Expect = 2.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAK 101
RPY+C+++GC +T +L H + + L
Sbjct: 19 RPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS 54
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.6 bits (50), Expect = 2.7
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 66 RPYKCMYKGCTKRYTDPSSLRKHAKNHN 93
+PYKC C D SSL KH + H+
Sbjct: 2 KPYKCKT--CDYAAADSSSLNKHLRIHS 27
Score = 23.6 bits (50), Expect = 3.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFD 64
+PY C C A ++SS KH R H D
Sbjct: 2 KPYKCKT--CDYAAADSSSLNKHLRIHSD 28
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 23.1 bits (50), Expect = 5.0
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 36 RPYSCTYEGCHKAFSNSSDRAKHQRTHFDTR 66
R Y+C++ C + F ++ H H R
Sbjct: 4 RSYTCSF--CKREFRSAQALGGHMNVHRRDR 32
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 22.8 bits (49), Expect = 5.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 17 KAFSRLENLKIHQRSHTGE 35
+ F L +H R HTGE
Sbjct: 15 RPFKAQYMLVVHMRRHTGE 33
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal
hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 24.5 bits (53), Expect = 6.1
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 69 KCMYKGCTKRYTDPSSLRKHAKNHNHD 95
C +RY D S HA H +
Sbjct: 41 TDGSILCGRRYFDGSGGNNHAVEHYRE 67
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 102
Score = 23.9 bits (52), Expect = 7.1
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 99 PAKMRKLNYAKPGDIV 114
P +++ + + GD+V
Sbjct: 50 PGRLKNRIWVREGDVV 65
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}
Length = 212
Score = 24.6 bits (52), Expect = 7.3
Identities = 13/98 (13%), Positives = 23/98 (23%), Gaps = 7/98 (7%)
Query: 18 AFSRLENLKIHQRSHTGERP-------YSCTYEGCHKAFSNSSDRAKHQRTHFDTRPYKC 70
AFS + ++ + TG C + +
Sbjct: 27 AFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTY 86
Query: 71 MYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYA 108
Y+G + AK + P L Y+
Sbjct: 87 PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYS 124
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain
{Leishmania mexicana [TaxId: 5665]}
Length = 141
Score = 24.2 bits (52), Expect = 8.0
Identities = 6/48 (12%), Positives = 12/48 (25%)
Query: 67 PYKCMYKGCTKRYTDPSSLRKHAKNHNHDHLTPAKMRKLNYAKPGDIV 114
+ +G + D L + + Y + GD
Sbjct: 72 RQLNITQGVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYC 119
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.3 bits (47), Expect = 8.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 11 QFPHCAKAFSRLENLKIHQRS 31
PHC +R +L +H R
Sbjct: 4 HCPHCDTVIARKSDLGVHLRK 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.422
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 747,525
Number of extensions: 33654
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 116
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)