BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9955
         (60 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
           The Myosin Phosphatase Targeting Subunit 1 (mypt1)
          Length = 299

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 6   QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           QG++ E AR  EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216


>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
 pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
 pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
 pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
          Length = 237

 Score = 33.9 bits (76), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 11 EDART----FEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
          ED RT      E + LE  K+ + +G L D P    G++ LH+AA KG+ +V++
Sbjct: 42 EDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCLHLAAKKGHYEVVQ 94


>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
          Identical Consensus Repeats
          Length = 126

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 22 LEDAKFWLSSGCLGDV-PNPKTGASALHVAAAKGYIKVMK 60
          LE  K  L +G   DV    K G + LH+AA  G+++V+K
Sbjct: 15 LEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVK 52



 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 22 LEDAKFWLSSGCLGDV-PNPKTGASALHVAAAKGYIKVMK 60
          LE  K  L +G   DV    K G + LH+AA  G+++V+K
Sbjct: 48 LEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVK 85



 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 22  LEDAKFWLSSGCLGDV-PNPKTGASALHVAAAKGYIKVMK 60
           LE  K  L +G   DV    K G + LH+AA  G+++V+K
Sbjct: 81  LEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVK 118


>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
          Identical Consensus Repeats
 pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
          Identical Consensus Repeats
          Length = 93

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 22 LEDAKFWLSSGCLGDV-PNPKTGASALHVAAAKGYIKVMK 60
          LE  K  L +G   DV    K G + LH+AA  G+++V+K
Sbjct: 15 LEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVK 52



 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 22 LEDAKFWLSSGCLGDV-PNPKTGASALHVAAAKGYIKVMK 60
          LE  K  L +G   DV    K G + LH+AA  G+++V+K
Sbjct: 48 LEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVK 85


>pdb|1J5W|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain
          (Tm0216) From Thermotoga Maritima At 1.95 A Resolution
 pdb|1J5W|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain
          (Tm0216) From Thermotoga Maritima At 1.95 A Resolution
          Length = 298

 Score = 25.4 bits (54), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 27 FWLSSGCLGDVP-NPKTGASALHVAAAKGYIK 57
          FW S GCL + P + + GA   H A   G ++
Sbjct: 25 FWASKGCLLEQPYDXEVGAGTFHPATFFGSLR 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,766,148
Number of Sequences: 62578
Number of extensions: 51332
Number of successful extensions: 167
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 8
length of query: 60
length of database: 14,973,337
effective HSP length: 31
effective length of query: 29
effective length of database: 13,033,419
effective search space: 377969151
effective search space used: 377969151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)