BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9955
(60 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BG95|MYPT2_MOUSE Protein phosphatase 1 regulatory subunit 12B OS=Mus musculus
GN=Ppp1r12b PE=1 SV=2
Length = 976
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 43/55 (78%)
Query: 6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
QG++ E +R EE+ ML+DA+ WL+SG + DV ++GA+ALHVAAAKGY +V++
Sbjct: 180 QGVDLEQSRKEEEQQMLQDARQWLNSGRIEDVRQARSGATALHVAAAKGYSEVLR 234
>sp|Q9DBR7|MYPT1_MOUSE Protein phosphatase 1 regulatory subunit 12A OS=Mus musculus
GN=Ppp1r12a PE=1 SV=2
Length = 1029
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
QG++ E AR EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERVMLRDARQWLNSGHISDVRHAKSGGTALHVAAAKGYTEVLK 216
>sp|O60237|MYPT2_HUMAN Protein phosphatase 1 regulatory subunit 12B OS=Homo sapiens
GN=PPP1R12B PE=1 SV=2
Length = 982
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 43/55 (78%)
Query: 6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
QG++ E +R EE+ ML+DA+ WL+SG + DV ++GA+ALHVAAAKGY +V++
Sbjct: 180 QGVDLEQSRKEEEQQMLQDARQWLNSGKIEDVRQARSGATALHVAAAKGYSEVLR 234
>sp|O14974|MYPT1_HUMAN Protein phosphatase 1 regulatory subunit 12A OS=Homo sapiens
GN=PPP1R12A PE=1 SV=1
Length = 1030
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
QG++ E AR EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
>sp|Q10728|MYPT1_RAT Protein phosphatase 1 regulatory subunit 12A OS=Rattus norvegicus
GN=Ppp1r12a PE=1 SV=2
Length = 1032
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
QG++ E AR EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHISDVRHAKSGGTALHVAAAKGYTEVLK 216
>sp|Q6DRG7|MYPT1_DANRE Protein phosphatase 1 regulatory subunit 12A OS=Danio rerio
GN=ppp1r12a PE=2 SV=2
Length = 1049
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
QG++ E AR EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGQINDVRHTKSGGTALHVAAAKGYAEVLK 216
>sp|Q90623|MYPT1_CHICK Protein phosphatase 1 regulatory subunit 12A OS=Gallus gallus
GN=PPP1R12A PE=1 SV=1
Length = 1004
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
QG++ E AR EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
>sp|Q3UMT1|PP12C_MOUSE Protein phosphatase 1 regulatory subunit 12C OS=Mus musculus
GN=Ppp1r12c PE=1 SV=1
Length = 782
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%)
Query: 6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+G++ E A+ EE +L D + WL+ G + + +P+TGASALHVAAAKGYI+VM+
Sbjct: 194 RGVDVEAAKRAEEELLLHDTRCWLNGGAMPEARHPRTGASALHVAAAKGYIEVMR 248
>sp|Q9BZL4|PP12C_HUMAN Protein phosphatase 1 regulatory subunit 12C OS=Homo sapiens
GN=PPP1R12C PE=1 SV=1
Length = 782
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%)
Query: 6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+G++ E A+ EE +L D + WL+ G + + +P+TGASALHVAAAKGYI+VM+
Sbjct: 190 RGVDVEAAKRAEEELLLHDTRCWLNGGAMPEARHPRTGASALHVAAAKGYIEVMR 244
>sp|Q21920|ANKHM_CAEEL Ankyrin repeat and KH domain-containing protein R11A8.7
OS=Caenorhabditis elegans GN=R11A8.7 PE=2 SV=3
Length = 2620
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 26 KFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
K LS DV NP TG + L +AA GYI +MK
Sbjct: 491 KLLLSKHAEVDVSNPDTGDTPLSLAARNGYIAIMK 525
>sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1
PE=1 SV=4
Length = 1298
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 11 EDART----FEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
ED RT E + LE K+ + +G L D P G++ LH+AA KG+ +V++
Sbjct: 804 EDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCLHLAAKKGHYEVVQ 856
>sp|Q9ERC1|MYO16_RAT Unconventional myosin-XVI OS=Rattus norvegicus GN=Myo16 PE=1 SV=1
Length = 1912
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 20 SMLEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVM 59
SML D + +LSSG GDV N K G + LH+A A GY +V+
Sbjct: 200 SMLTDVRHFLSSG--GDV-NEKNDDGVTLLHMACASGYKEVV 238
>sp|Q5DU14|MYO16_MOUSE Unconventional myosin-XVI OS=Mus musculus GN=Myo16 PE=1 SV=2
Length = 1919
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 20 SMLEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVM 59
SML D + +LSSG GDV N K G + LH+A A GY +V+
Sbjct: 200 SMLTDVRHFLSSG--GDV-NEKNDDGVTLLHMACASGYKEVV 238
>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3
Length = 1013
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
E + LS+GC D N T ++ALHVA +G+++V++
Sbjct: 570 EATRVLLSAGCRADAIN-STQSTALHVAVQRGFLEVVR 606
>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2
Length = 973
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
E + LS+GC D N T ++ALHVA +G+++V+K
Sbjct: 528 EATRVLLSAGCAVDARN-GTRSTALHVAVQRGFLEVVK 564
>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2
SV=2
Length = 971
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
E + LS+GC D N T ++ALHVA +G+++V+K
Sbjct: 526 EATRLLLSAGCGVDAQN-GTRSTALHVAVQRGFLEVVK 562
>sp|Q9Y6X6|MYO16_HUMAN Unconventional myosin-XVI OS=Homo sapiens GN=MYO16 PE=1 SV=3
Length = 1858
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 20 SMLEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVM 59
SML D K +LSSG G+V N K G + LH+A A GY +V+
Sbjct: 200 SMLTDVKHFLSSG--GNV-NEKNDEGVTLLHMACASGYKEVV 238
>sp|Q923M0|PP16A_MOUSE Protein phosphatase 1 regulatory subunit 16A OS=Mus musculus
GN=Ppp1r16a PE=1 SV=1
Length = 524
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 6 QGINPE---DARTFEERSMLEDAKFWLSSGCLGDVPNP-KTGASALHVAAAKGYIKV 58
QGI E +AR E ML D + L +G ++ +P GA+ LH+AAA G+ +V
Sbjct: 193 QGITQEGIEEARAVPELCMLNDLQNRLQAG--ANLSDPLDHGATLLHIAAANGFSEV 247
>sp|Q96I34|PP16A_HUMAN Protein phosphatase 1 regulatory subunit 16A OS=Homo sapiens
GN=PPP1R16A PE=1 SV=1
Length = 528
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 11 EDARTFEERSMLEDAKFWLSSGCLGDVPNP-KTGASALHVAAAKGY 55
E AR E ML+D + L +G D+ P GA+ LHVAAA G+
Sbjct: 201 EAARAVPELRMLDDIRSRLQAG--ADLHAPLDHGATLLHVAAANGF 244
>sp|Q9ZCL3|Y714_RICPR Putative ankyrin repeat protein RP714 OS=Rickettsia prowazekii
(strain Madrid E) GN=RP714 PE=4 SV=1
Length = 107
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 41 KTGASALHVAAAKGYIKV 58
K G SALH+AA+KGY K+
Sbjct: 39 KNGNSALHIAASKGYTKI 56
>sp|Q5DW34|EHMT1_MOUSE Histone-lysine N-methyltransferase EHMT1 OS=Mus musculus GN=Ehmt1
PE=1 SV=2
Length = 1296
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 11 EDART----FEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
ED RT E + L+ K+ + +G D P G++ LH+AA KG+ V++
Sbjct: 802 EDQRTPLMEAAENNHLDAVKYLIKAGAQVD-PKDAEGSTCLHLAAKKGHYDVVQ 854
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,896,138
Number of Sequences: 539616
Number of extensions: 627846
Number of successful extensions: 2279
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2264
Number of HSP's gapped (non-prelim): 24
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)