Query psy9955
Match_columns 60
No_of_seqs 109 out of 402
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 23:56:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 99.4 1.4E-13 4.7E-18 84.8 3.4 54 5-59 58-119 (169)
2 1n0q_A 3ANK, 3 ankyrin repeats 99.4 2.1E-13 7.1E-18 75.2 3.4 57 3-60 21-85 (93)
3 4gpm_A Engineered protein OR26 99.4 3.2E-13 1.1E-17 83.2 3.4 57 3-60 89-153 (169)
4 3aaa_C Myotrophin, protein V-1 99.3 1.5E-12 5.1E-17 74.5 3.0 57 3-60 26-90 (123)
5 2zgd_A 3 repeat synthetic anky 99.2 4.2E-12 1.4E-16 72.2 3.0 57 3-60 43-107 (110)
6 1bd8_A P19INK4D CDK4/6 inhibit 99.2 4.8E-12 1.6E-16 74.2 3.1 57 3-60 54-118 (156)
7 2jab_A H10-2-G3; HER2, darpin, 99.2 6E-12 2.1E-16 73.2 3.1 56 3-59 33-96 (136)
8 1ycs_B 53BP2, P53BP2; ankyrin 99.2 6.2E-12 2.1E-16 79.3 3.0 57 3-60 56-120 (239)
9 4b93_B Ankyrin repeat domain-c 99.2 3.5E-12 1.2E-16 82.7 1.8 57 3-60 138-202 (269)
10 1bi7_B P16INK4A, MTS1, multipl 99.2 7.5E-12 2.6E-16 74.2 2.8 56 3-59 63-127 (156)
11 1d9s_A Cyclin-dependent kinase 99.2 8.4E-12 2.9E-16 72.5 2.7 57 3-60 63-128 (136)
12 3twr_A Tankyrase-2; ankyrin re 99.2 1.2E-11 4E-16 73.3 3.4 57 3-60 61-125 (165)
13 2vge_A RELA-associated inhibit 99.2 9.4E-12 3.2E-16 78.9 3.1 57 3-60 40-104 (229)
14 1ihb_A P18-INK4C(INK6), cyclin 99.2 1.2E-11 4E-16 72.7 3.4 55 4-59 57-119 (162)
15 1dcq_A PYK2-associated protein 99.2 8.8E-12 3E-16 81.4 3.0 57 3-60 191-255 (278)
16 3c5r_A BARD-1, BRCA1-associate 99.2 9.7E-12 3.3E-16 72.0 2.3 57 3-60 29-93 (137)
17 1awc_B Protein (GA binding pro 99.2 1.6E-11 5.3E-16 72.3 3.1 36 23-59 114-149 (153)
18 1awc_B Protein (GA binding pro 99.2 1.9E-11 6.4E-16 71.9 3.4 57 3-60 53-117 (153)
19 2jab_A H10-2-G3; HER2, darpin, 99.2 1.9E-11 6.4E-16 71.1 3.3 57 3-60 66-130 (136)
20 4g8k_A 2-5A-dependent ribonucl 99.1 1.8E-11 6.3E-16 79.5 3.2 39 22-60 38-76 (337)
21 3f6q_A Integrin-linked protein 99.1 2.6E-11 8.9E-16 72.9 3.3 56 3-59 58-121 (179)
22 1s70_B 130 kDa myosin-binding 99.1 1.9E-11 6.5E-16 77.6 2.8 57 3-60 59-123 (299)
23 1bi7_B P16INK4A, MTS1, multipl 99.1 1.4E-11 4.9E-16 73.0 1.8 57 3-60 31-95 (156)
24 1d9s_A Cyclin-dependent kinase 99.1 1.3E-11 4.6E-16 71.7 1.6 57 3-60 31-95 (136)
25 1n0q_A 3ANK, 3 ankyrin repeats 99.1 4.3E-11 1.5E-15 65.7 3.6 38 22-60 15-52 (93)
26 3deo_A Signal recognition part 99.1 3.4E-11 1.1E-15 73.1 3.3 54 7-60 66-127 (183)
27 3t8k_A Uncharacterized protein 99.1 4.7E-11 1.6E-15 74.2 4.0 57 3-60 100-171 (186)
28 3utm_A Tankyrase-1; tankyrase, 99.1 2.9E-11 9.9E-16 77.3 3.0 57 3-60 233-297 (351)
29 3v30_A DNA-binding protein rfx 99.1 2.8E-11 9.7E-16 72.0 2.8 34 24-58 117-150 (172)
30 3ui2_A Signal recognition part 99.1 3.8E-11 1.3E-15 76.3 3.5 57 3-60 64-128 (244)
31 4g8k_A 2-5A-dependent ribonucl 99.1 3.7E-11 1.3E-15 78.1 3.5 57 3-60 225-290 (337)
32 3lvq_E ARF-GAP with SH3 domain 99.1 2.8E-11 9.7E-16 84.0 3.0 57 3-60 193-257 (497)
33 1oy3_D Transcription factor in 99.1 3.1E-11 1.1E-15 75.5 2.8 57 3-60 177-242 (282)
34 1yyh_A HN1;, notch 1, ankyrin 99.1 4.2E-11 1.4E-15 75.5 3.4 56 3-59 176-239 (253)
35 3ehr_A Osteoclast-stimulating 99.1 2.6E-11 9E-16 75.0 2.4 57 3-60 92-157 (222)
36 2y1l_E Darpin-8.4; hydrolase-i 99.1 5.2E-11 1.8E-15 71.2 3.4 36 23-59 61-96 (169)
37 3v30_A DNA-binding protein rfx 99.1 4.6E-11 1.6E-15 71.1 3.1 57 3-60 55-119 (172)
38 3v31_A Ankyrin repeat family A 99.1 4.8E-11 1.6E-15 70.7 3.1 34 24-58 84-117 (167)
39 2rfm_A Putative ankyrin repeat 99.1 4E-11 1.4E-15 72.6 2.8 34 24-58 116-149 (192)
40 2l6b_A NR1C; ankyrin, consensu 99.1 1.2E-11 3.9E-16 69.9 0.3 57 3-60 28-92 (115)
41 2y1l_E Darpin-8.4; hydrolase-i 99.1 5.8E-11 2E-15 70.9 3.4 55 4-59 67-129 (169)
42 1ihb_A P18-INK4C(INK6), cyclin 99.1 6.5E-11 2.2E-15 69.5 3.2 57 3-60 24-87 (162)
43 4b93_B Ankyrin repeat domain-c 99.1 9.2E-11 3.2E-15 76.0 4.0 56 4-60 106-169 (269)
44 1n0r_A 4ANK, 4 ankyrin repeats 99.1 8.4E-11 2.9E-15 65.8 3.4 55 4-59 55-117 (126)
45 1yyh_A HN1;, notch 1, ankyrin 99.1 6.5E-11 2.2E-15 74.6 3.2 57 3-60 143-207 (253)
46 1n0r_A 4ANK, 4 ankyrin repeats 99.1 7.3E-11 2.5E-15 66.1 3.0 57 3-60 21-85 (126)
47 2rfm_A Putative ankyrin repeat 99.1 7.1E-11 2.4E-15 71.5 3.1 57 3-60 120-184 (192)
48 4hbd_A KN motif and ankyrin re 99.1 5.9E-11 2E-15 76.5 2.9 56 3-59 202-266 (276)
49 2b0o_E UPLC1; arfgap, structur 99.1 5.5E-11 1.9E-15 78.5 2.7 57 3-60 212-276 (301)
50 4hbd_A KN motif and ankyrin re 99.1 5.6E-11 1.9E-15 76.7 2.6 56 4-60 170-233 (276)
51 3hra_A Ankyrin repeat family p 99.1 6.7E-11 2.3E-15 71.3 2.8 57 3-60 125-195 (201)
52 3lvq_E ARF-GAP with SH3 domain 99.1 4.1E-11 1.4E-15 83.2 2.0 58 2-60 150-224 (497)
53 3v31_A Ankyrin repeat family A 99.1 7.5E-11 2.6E-15 69.8 2.8 57 3-60 88-152 (167)
54 1sw6_A Regulatory protein SWI6 99.0 7.6E-11 2.6E-15 77.6 2.9 52 3-55 116-176 (327)
55 1n11_A Ankyrin; clathrin, BAND 99.0 6.1E-11 2.1E-15 79.2 2.2 55 4-59 298-360 (437)
56 2xai_A ASB-9, ankyrin repeat a 99.0 9.4E-11 3.2E-15 74.3 2.9 57 3-60 22-86 (261)
57 2rfa_A Transient receptor pote 99.0 1.6E-10 5.5E-15 71.2 3.7 56 3-59 94-170 (232)
58 1k1a_A B-cell lymphoma 3-encod 99.0 1.1E-10 3.8E-15 71.7 3.0 57 3-60 135-200 (241)
59 3c5r_A BARD-1, BRCA1-associate 99.0 1.1E-10 3.9E-15 67.4 2.6 38 22-60 23-60 (137)
60 2dzn_A Probable 26S proteasome 99.0 1.3E-10 4.5E-15 71.1 3.0 55 4-59 127-190 (228)
61 2f8y_A Notch homolog 1, transl 99.0 1.5E-10 5.3E-15 70.7 3.2 35 24-59 140-174 (223)
62 3aji_A 26S proteasome non-ATPa 99.0 1.8E-10 6.1E-15 70.7 3.3 56 3-59 125-188 (231)
63 2f8y_A Notch homolog 1, transl 99.0 2.2E-10 7.6E-15 70.0 3.3 57 3-60 144-208 (223)
64 3utm_A Tankyrase-1; tankyrase, 99.0 2.2E-10 7.4E-15 73.2 3.3 37 22-59 71-107 (351)
65 1wdy_A 2-5A-dependent ribonucl 99.0 2.1E-10 7.1E-15 71.3 3.2 55 4-59 206-269 (285)
66 3f6q_A Integrin-linked protein 99.0 2.7E-10 9.1E-15 68.4 3.5 53 7-60 29-89 (179)
67 1ycs_B 53BP2, P53BP2; ankyrin 99.0 1.6E-10 5.6E-15 72.7 2.6 56 3-60 24-87 (239)
68 2b0o_E UPLC1; arfgap, structur 99.0 1.6E-10 5.6E-15 76.2 2.7 57 3-60 170-243 (301)
69 3ljn_A Hypothetical protein; a 99.0 1.1E-10 3.9E-15 76.5 1.8 50 10-60 204-261 (364)
70 1k1a_A B-cell lymphoma 3-encod 99.0 2.5E-11 8.4E-16 74.7 -1.4 57 3-60 169-233 (241)
71 1bd8_A P19INK4D CDK4/6 inhibit 99.0 2.3E-10 8E-15 66.9 2.8 56 3-60 87-150 (156)
72 3jue_A Arfgap with coiled-coil 99.0 2.2E-10 7.5E-15 78.4 3.0 56 3-59 219-284 (368)
73 2vge_A RELA-associated inhibit 99.0 2.2E-10 7.6E-15 72.6 2.7 57 3-60 4-71 (229)
74 2dzn_A Probable 26S proteasome 99.0 3.3E-10 1.1E-14 69.2 3.3 57 3-60 91-157 (228)
75 3b7b_A Euchromatic histone-lys 99.0 3.3E-10 1.1E-14 69.8 3.2 55 4-59 131-193 (237)
76 2etb_A Transient receptor pote 99.0 3.5E-10 1.2E-14 70.8 3.3 54 3-57 109-188 (256)
77 2fo1_E LIN-12 protein; beta-ba 99.0 3.4E-10 1.2E-14 75.5 3.4 56 4-60 153-216 (373)
78 3aaa_C Myotrophin, protein V-1 99.0 9.7E-11 3.3E-15 66.8 0.5 57 3-60 59-123 (123)
79 1oy3_D Transcription factor in 98.9 2E-10 6.9E-15 71.8 1.9 57 3-60 28-95 (282)
80 3t8k_A Uncharacterized protein 98.9 6.9E-11 2.3E-15 73.5 -0.3 30 24-54 96-126 (186)
81 2zgd_A 3 repeat synthetic anky 98.9 5.8E-10 2E-14 63.2 3.6 38 22-60 37-74 (110)
82 3kea_A K1L; tropism, ANK repea 98.9 2.8E-10 9.5E-15 73.5 2.3 55 3-60 50-112 (285)
83 1wdy_A 2-5A-dependent ribonucl 98.9 4.8E-10 1.7E-14 69.6 3.3 53 7-60 172-236 (285)
84 3jue_A Arfgap with coiled-coil 98.9 4.5E-10 1.5E-14 76.9 3.4 57 3-60 254-318 (368)
85 3hra_A Ankyrin repeat family p 98.9 5.7E-10 1.9E-14 67.2 3.4 52 8-60 30-89 (201)
86 3twr_A Tankyrase-2; ankyrin re 98.9 5E-10 1.7E-14 66.1 3.1 54 6-60 31-92 (165)
87 2rfa_A Transient receptor pote 98.9 4E-10 1.4E-14 69.4 2.7 57 3-60 140-214 (232)
88 3jxi_A Vanilloid receptor-rela 98.9 4.7E-10 1.6E-14 70.2 3.1 52 3-55 112-188 (260)
89 1ikn_D Protein (I-kappa-B-alph 98.9 8.5E-11 2.9E-15 72.9 -0.3 37 22-59 130-167 (236)
90 3ljn_A Hypothetical protein; a 98.9 2.3E-10 7.8E-15 75.0 1.6 57 3-60 159-228 (364)
91 3jxi_A Vanilloid receptor-rela 98.9 1E-10 3.6E-15 73.3 -0.0 54 6-60 165-242 (260)
92 2pnn_A Transient receptor pote 98.9 4.8E-10 1.6E-14 70.9 3.0 52 3-55 120-196 (273)
93 2fo1_E LIN-12 protein; beta-ba 98.9 4.2E-10 1.4E-14 75.0 2.9 56 4-60 299-363 (373)
94 1n11_A Ankyrin; clathrin, BAND 98.9 5.2E-10 1.8E-14 74.7 3.3 56 3-59 330-393 (437)
95 3d9h_A CDNA FLJ77766, highly s 98.9 4.5E-10 1.5E-14 72.4 2.8 56 3-59 78-141 (285)
96 1dcq_A PYK2-associated protein 98.9 5.9E-10 2E-14 72.7 3.4 38 22-60 185-222 (278)
97 3aji_A 26S proteasome non-ATPa 98.9 6.1E-10 2.1E-14 68.3 3.2 35 24-59 88-122 (231)
98 2etb_A Transient receptor pote 98.9 1.2E-10 4.2E-15 72.9 -0.0 54 6-60 161-238 (256)
99 3ehr_A Osteoclast-stimulating 98.9 1.7E-10 6E-15 71.3 0.2 57 3-60 125-190 (222)
100 3eu9_A Huntingtin-interacting 98.9 7.5E-10 2.6E-14 67.4 3.0 57 3-60 162-227 (240)
101 3b7b_A Euchromatic histone-lys 98.9 8.3E-10 2.8E-14 68.0 3.1 56 3-59 30-93 (237)
102 3deo_A Signal recognition part 98.9 9.2E-10 3.1E-14 66.7 2.8 55 3-58 95-158 (183)
103 2xai_A ASB-9, ankyrin repeat a 98.9 8.3E-10 2.8E-14 69.9 2.6 54 4-59 121-182 (261)
104 3kea_A K1L; tropism, ANK repea 98.9 4.4E-10 1.5E-14 72.6 1.1 57 3-60 81-146 (285)
105 1ikn_D Protein (I-kappa-B-alph 98.8 2E-09 6.9E-14 66.6 3.3 57 3-60 136-201 (236)
106 3d9h_A CDNA FLJ77766, highly s 98.8 2.2E-09 7.6E-14 69.1 3.1 54 4-59 177-238 (285)
107 1s70_B 130 kDa myosin-binding 98.8 2.8E-09 9.5E-14 67.5 3.4 38 22-60 212-249 (299)
108 2pnn_A Transient receptor pote 98.8 6.1E-10 2.1E-14 70.5 0.3 54 6-60 173-250 (273)
109 3ui2_A Signal recognition part 98.8 1.3E-09 4.4E-14 69.2 1.5 50 3-53 96-154 (244)
110 2l6b_A NR1C; ankyrin, consensu 98.8 1.7E-09 5.9E-14 60.8 1.5 38 22-60 22-59 (115)
111 3eu9_A Huntingtin-interacting 98.7 6.6E-09 2.3E-13 63.2 2.9 35 24-59 91-125 (240)
112 1sw6_A Regulatory protein SWI6 98.6 1.3E-08 4.5E-13 66.8 2.8 40 20-60 108-148 (327)
113 2aja_A Ankyrin repeat family p 98.4 8.1E-09 2.8E-13 70.7 -3.1 38 22-60 176-216 (376)
114 2aja_A Ankyrin repeat family p 98.1 4E-07 1.4E-11 62.3 -0.6 37 22-60 141-180 (376)
115 1ass_A Thermosome; chaperonin, 52.4 9.3 0.00032 23.1 2.3 46 9-54 49-94 (159)
116 1gml_A T-complex protein 1 sub 47.6 12 0.00041 22.9 2.3 47 9-55 55-101 (178)
117 3o66_A Glycine betaine/carniti 40.8 16 0.00054 23.9 2.1 46 12-58 15-65 (282)
118 1r9l_A Glycine betaine-binding 39.5 14 0.00049 23.9 1.8 39 19-58 21-60 (309)
119 3mol_A Heme acquisition protei 36.9 31 0.001 21.9 2.9 21 18-38 145-168 (184)
120 3r6u_A Choline-binding protein 36.4 18 0.00063 23.6 1.9 43 16-59 22-67 (284)
121 3l6g_A Betaine ABC transporter 34.8 14 0.00049 23.4 1.2 40 17-58 13-53 (256)
122 2b4l_A Glycine betaine-binding 30.6 31 0.0011 22.1 2.3 40 17-58 176-216 (268)
123 4esw_A Pyrimidine biosynthesis 26.2 19 0.00065 23.1 0.6 21 36-57 14-34 (342)
124 1sw5_A Osmoprotection protein 26.1 64 0.0022 20.2 3.1 40 18-58 18-59 (275)
125 3gt0_A Pyrroline-5-carboxylate 26.0 58 0.002 19.9 2.9 33 4-36 191-223 (247)
126 3iuo_A ATP-dependent DNA helic 24.1 66 0.0023 18.3 2.7 36 2-37 27-65 (122)
127 1dk0_A HASA, heme-binding prot 22.8 74 0.0025 20.3 2.9 20 19-38 145-165 (188)
128 2bdq_A Copper homeostasis prot 22.5 69 0.0024 20.7 2.8 19 16-34 73-91 (224)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.40 E-value=1.4e-13 Score=84.80 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=28.4
Q ss_pred hcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 5 VQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 5 ~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++|++++.....+.+++ .+.+++|+++|+|+|.+ |..|.||||+||.+|+.++|
T Consensus 58 ~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~-d~~G~TpLh~A~~~g~~~~v 119 (169)
T 4gpm_A 58 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVV 119 (169)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred hcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCCHHHH
Confidence 44444444444444443 33555555555555555 55555555555555555554
No 2
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.39 E-value=2.1e-13 Score=75.21 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=50.0
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus 21 Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~~~~~~~~ 85 (93)
T 1n0q_A 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVK 85 (93)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHH
Confidence 5678999988888777776 46899999999999999 999999999999999998864
No 3
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.36 E-value=3.2e-13 Score=83.17 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=52.0
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+++|++.|+|+|.+ |..|.||||+|+.+|+.++++
T Consensus 89 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~g~~~iv~ 153 (169)
T 4gpm_A 89 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEVVK 153 (169)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHH
Confidence 5788999999988888887 56999999999999999 999999999999999999874
No 4
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.28 E-value=1.5e-12 Score=74.50 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=48.7
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus 26 ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~tpL~~A~~~~~~~~v~ 90 (123)
T 3aaa_C 26 YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVK 90 (123)
T ss_dssp HHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHHH
Confidence 5678888888877777776 46889999999999999 999999999999999998864
No 5
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.23 E-value=4.2e-12 Score=72.19 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=47.2
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus 43 Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~ 107 (110)
T 2zgd_A 43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAE 107 (110)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-ccCCCcHHHHHHHcCCHHHHH
Confidence 5677888887777666666 46889999999999998 899999999999999988763
No 6
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.22 E-value=4.8e-12 Score=74.19 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=43.3
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus 54 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 118 (156)
T 1bd8_A 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVS 118 (156)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHhChHHHHH
Confidence 4567777777766666665 45788888888888888 888888888888888887763
No 7
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.21 E-value=6e-12 Score=73.17 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=32.0
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++++|.+++.....+.+++ .+.+++|++.|+++|.. |..|.||||+|+.+|+.+++
T Consensus 33 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v 96 (136)
T 2jab_A 33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIA 96 (136)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHH
Confidence 3445555555554444444 34556666666666666 66666666666666665554
No 8
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.20 E-value=6.2e-12 Score=79.25 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=45.0
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ ++.+++|++.|+++|.+ |..|.||||+||.+|+.++|+
T Consensus 56 Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~ 120 (239)
T 1ycs_B 56 IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCK 120 (239)
T ss_dssp HTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHH
Confidence 4567777777777666666 45888888888888888 888888888888888888763
No 9
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.20 E-value=3.5e-12 Score=82.73 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=39.9
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|++++.....+.+++ .+.+++|++.|+|+|.+ +..|.||||+||.+|+.++|+
T Consensus 138 Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~-~~~g~t~Lh~A~~~g~~~~v~ 202 (269)
T 4b93_B 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS-NNKGNTALHEAVIEKHVFVVE 202 (269)
T ss_dssp HHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcc-ccCCCcHHHHHHHcCCHHHHH
Confidence 3556777776666666655 24677777777777777 777777777777777777663
No 10
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.19 E-value=7.5e-12 Score=74.20 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=39.9
Q ss_pred hhhcCCChhhccchHHH-HH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDARTFEER-SM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~-~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++++|++++.....+.+ ++ .+.+++|+++|+++|.+ |..|.||||+|+.+|+.+++
T Consensus 63 Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~v 127 (156)
T 1bi7_B 63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLPVDLAEELGHRDVA 127 (156)
T ss_dssp HHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTCCCHHHHHHHHTCHHHH
T ss_pred HHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHhCHHHHH
Confidence 45567777766666655 44 45777777778877777 77778888888777777765
No 11
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.18 E-value=8.4e-12 Score=72.55 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=41.0
Q ss_pred hhhcCCChhhccch-HHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTF-EERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~-~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++..... +.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus 63 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~ 128 (136)
T 1d9s_A 63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEEQGHRDIAR 128 (136)
T ss_dssp HHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCC-SSSSSCHHHHHHHHTCHHHHH
T ss_pred HHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHH
Confidence 45567777766666 55555 45777888888888887 778888888888888777653
No 12
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.18 E-value=1.2e-11 Score=73.25 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=44.7
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus 61 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 125 (165)
T 3twr_A 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICK 125 (165)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred HHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence 4567788877777666665 45788888888888888 888888888888888888763
No 13
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.18 E-value=9.4e-12 Score=78.93 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=43.0
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ ++.+++|++.|+++|.+ |..|.||||+|+.+|+.++|+
T Consensus 40 Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~-d~~g~tpLh~A~~~g~~~~v~ 104 (229)
T 2vge_A 40 AVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP-DSHGWTPLHCAASCNDTVICM 104 (229)
T ss_dssp HHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 4567777777766666665 45778888888888888 788888888888888877763
No 14
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.18 E-value=1.2e-11 Score=72.70 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=33.8
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+++|.+++.....+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.+++
T Consensus 57 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v 119 (162)
T 1ihb_A 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVV 119 (162)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHH
Confidence 445566555555444444 34666666666666666 66666666666666666654
No 15
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.18 E-value=8.8e-12 Score=81.41 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=48.7
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+++|++.|+|+|.+ |..|.||||+|+.+|+.++++
T Consensus 191 Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~~~~~~v~ 255 (278)
T 1dcq_A 191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHEHCEE 255 (278)
T ss_dssp HHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-cCCCCCHHHHHHHcCCHHHHH
Confidence 4677888888888777777 46889999999999999 999999999999999988864
No 16
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.16 E-value=9.7e-12 Score=72.02 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=44.6
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus 29 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 93 (137)
T 3c5r_A 29 LLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLHDAAKNGHVDIVK 93 (137)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CGGGCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc-CCCCCCHHHHHHHcCCHHHHH
Confidence 4567777777766666665 45788888888888888 888888888888888888763
No 17
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.16 E-value=1.6e-11 Score=72.27 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+.+++|++.|+++|.+ +..|.||||+|+.+|+.+++
T Consensus 114 ~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~i~ 149 (153)
T 1awc_B 114 EVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLA 149 (153)
T ss_dssp HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHH
Confidence 3444555555555554 45555555555555554443
No 18
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.16 E-value=1.9e-11 Score=71.92 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=49.6
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|++++.....+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus 53 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 117 (153)
T 1awc_B 53 LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVE 117 (153)
T ss_dssp HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 5678888887777666665 77999999999999999 999999999999999999874
No 19
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.16 E-value=1.9e-11 Score=71.06 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=49.8
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|.+++.....+.+++ .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus 66 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~tpl~~A~~~~~~~~~~ 130 (136)
T 2jab_A 66 LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAE 130 (136)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCc-CCCCCCHHHHHHHCCCHHHHH
Confidence 5678888888877776666 56899999999999999 999999999999999999874
No 20
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.14 E-value=1.8e-11 Score=79.52 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.|++||++|+|+|.+++..|.||||+||.+|+.++|+
T Consensus 38 ~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~ 76 (337)
T 4g8k_A 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE 76 (337)
T ss_dssp HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHH
Confidence 568999999999999995567999999999999999874
No 21
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.13 E-value=2.6e-11 Score=72.89 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=39.6
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+++.|.+++.....+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.+++
T Consensus 58 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v 121 (179)
T 3f6q_A 58 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVA 121 (179)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHH
Confidence 4556777766666555555 45777777778887777 77778888888877777765
No 22
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.13 E-value=1.9e-11 Score=77.62 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=47.9
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++|+
T Consensus 59 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~g~~~~v~ 123 (299)
T 1s70_B 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAE 123 (299)
T ss_dssp HHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHH
Confidence 5677888888777776666 56889999999999998 999999999999999988864
No 23
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.12 E-value=1.4e-11 Score=72.96 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=48.2
Q ss_pred hhhcCCChhhccchHHHHH-------HHHHHHHHHcCCCCCCCCCCCCCc-HHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM-------LEDAKFWLSSGCLGDVPNPKTGAS-ALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m-------l~~~~~Ll~~Gadvn~~~d~~G~T-pLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ .+.+++|++.|+++|.+ +..|.| |||+|+.+|+.++|+
T Consensus 31 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~-d~~g~ttpL~~A~~~~~~~~v~ 95 (156)
T 1bi7_B 31 LLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLV 95 (156)
T ss_dssp HHTTTCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHHCCCHHHHH
Confidence 4667888777766655554 67899999999999999 999999 999999999999874
No 24
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.12 E-value=1.3e-11 Score=71.67 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=46.1
Q ss_pred hhhcCCChhhccchHHHHH-------HHHHHHHHHcCCCCCCCCCCC-CCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM-------LEDAKFWLSSGCLGDVPNPKT-GASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m-------l~~~~~Ll~~Gadvn~~~d~~-G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+++|++.|+++|.+ +.. |.||||+|+.+|+.++++
T Consensus 31 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~~~~~~v~ 95 (136)
T 1d9s_A 31 LLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLV 95 (136)
T ss_dssp HHHTTCCTTCCCTTCCTTTTTSTTSCHHHHHHHHHHTCCSSCC-BTTTTBCHHHHHHHHTCHHHHH
T ss_pred HHHcCCCcCCcCCCCCCHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCCHHHHHHHcCCHHHHH
Confidence 4567777776665555444 57899999999999999 888 999999999999998864
No 25
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.12 E-value=4.3e-11 Score=65.75 Aligned_cols=38 Identities=37% Similarity=0.530 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus 15 ~~~v~~Ll~~g~~~n~~-d~~g~t~L~~A~~~~~~~~v~ 52 (93)
T 1n0q_A 15 LEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVK 52 (93)
T ss_dssp HHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCHHHHH
Confidence 56799999999999999 999999999999999999874
No 26
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.12 E-value=3.4e-11 Score=73.10 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=44.1
Q ss_pred CCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 7 GINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 7 Gi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
|.+++.....+.+++ .+.+++|++.|+++|..++..|.||||+|+.+|+.++++
T Consensus 66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~ 127 (183)
T 3deo_A 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127 (183)
T ss_dssp TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHH
T ss_pred cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHH
Confidence 778887777777766 468899999999999883388999999999999988764
No 27
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.12 E-value=4.7e-11 Score=74.20 Aligned_cols=57 Identities=18% Similarity=0.030 Sum_probs=48.4
Q ss_pred hhhcCCChhhccchHH-HHH-------------HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEE-RSM-------------LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~-~~m-------------l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|+|+++....+. +++ .+.+++|++ .|+|+|.+ |..|.||||+|+..|+.++|+
T Consensus 100 Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~-d~~G~TpL~~A~~~~~~~~v~ 171 (186)
T 3t8k_A 100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK-DKWGLTALEFVKRCQKPIALK 171 (186)
T ss_dssp HHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC-CTTSCCHHHHHHTTTCHHHHH
T ss_pred HHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc-CCCCCCHHHHHHHcCCHHHHH
Confidence 5678999998887776 333 457889999 99999999 999999999999999998864
No 28
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.11 E-value=2.9e-11 Score=77.33 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=49.2
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++|+
T Consensus 233 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~-d~~g~t~L~~A~~~~~~~~v~ 297 (351)
T 3utm_A 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTALHRAALAGHLQTCR 297 (351)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHH
Confidence 4678888888777777776 46899999999999999 999999999999999998874
No 29
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.11 E-value=2.8e-11 Score=71.99 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=15.7
Q ss_pred HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955 24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV 58 (60)
Q Consensus 24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev 58 (60)
.+++|++.|++++.. +..|.||||+|+.+|+.++
T Consensus 117 ~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~ 150 (172)
T 3v30_A 117 CVEALLARGADLTTE-ADSGYTPMDLAVALGYRKV 150 (172)
T ss_dssp HHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHHcCCCcccc-CCCCCCHHHHHHHhCcHHH
Confidence 444444444444444 4444444444444444444
No 30
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.11 E-value=3.8e-11 Score=76.26 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=47.6
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++ |.+++.....+.+++ .+.+++|+++|+++|.+++..|.||||+||.+|+.++|+
T Consensus 64 Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~ 128 (244)
T 3ui2_A 64 LLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128 (244)
T ss_dssp TTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHH
T ss_pred HHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence 344 888888887777776 568999999999999993488999999999999998874
No 31
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.11 E-value=3.7e-11 Score=78.07 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=45.4
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSS-GCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~-Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.++.|++. |+++|.+ |..|.||||+|+.+|+.++||
T Consensus 225 Ll~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~-d~~G~TpL~~A~~~g~~~iv~ 290 (337)
T 4g8k_A 225 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKLKKIAE 290 (337)
T ss_dssp HHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCB-CTTSCBHHHHHHHTTCHHHHH
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCc-CCCCCCHHHHHHHcCCHHHHH
Confidence 4567888888777777766 3577888864 8899998 889999999999999988874
No 32
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.11 E-value=2.8e-11 Score=84.02 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=50.2
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|++++.....+.++| .+.+++||++|||+|.. |..|.||||+|+.+|+.++++
T Consensus 193 Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~ 257 (497)
T 3lvq_E 193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEE 257 (497)
T ss_dssp HHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence 5678899998888888887 56899999999999999 999999999999999998864
No 33
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.10 E-value=3.1e-11 Score=75.50 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=42.3
Q ss_pred hhhcCCChhhccch-HHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTF-EERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~-~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|.+++..... +.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus 177 Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~~~~~~v~ 242 (282)
T 1oy3_D 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR-MYGGRTPLGSALLRPNPILAR 242 (282)
T ss_dssp HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHTSSCHHHHH
T ss_pred HHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc-ccCCCCHHHHHHHcCCcHHHH
Confidence 45667777776543 54554 45788888888888888 888888888888888887763
No 34
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.10 E-value=4.2e-11 Score=75.47 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=37.4
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+++.|.+++.....+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.+|+
T Consensus 176 Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~g~~~i~ 239 (253)
T 1yyh_A 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIV 239 (253)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc-ccCCCCHHHHHHHcCCHHHH
Confidence 3456666666655555555 34677777777777777 77777777777777777765
No 35
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.10 E-value=2.6e-11 Score=74.97 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=45.0
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSS-GCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~-Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+++|++. |+++|.+ |..|.||||+|+.+|+.++|+
T Consensus 92 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~-d~~g~tpL~~A~~~~~~~~v~ 157 (222)
T 3ehr_A 92 CLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ-NKLGDTALHAAAWKGYADIVQ 157 (222)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcccc-CCCCCCHHHHHHHcCCHHHHH
Confidence 4567888877777666666 4678888888 8888888 888888888888888888763
No 36
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.09 E-value=5.2e-11 Score=71.15 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 23 ~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+.+++|++.|+++|.. +..|.||||+|+.+|+.+++
T Consensus 61 ~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~ 96 (169)
T 2y1l_E 61 EIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIV 96 (169)
T ss_dssp HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHH
Confidence 3445555555555555 55555555555555554443
No 37
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.09 E-value=4.6e-11 Score=71.05 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=49.3
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus 55 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 119 (172)
T 3v30_A 55 LLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVE 119 (172)
T ss_dssp HHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 5677888887766666555 78999999999999999 999999999999999999874
No 38
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.09 E-value=4.8e-11 Score=70.70 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955 24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV 58 (60)
Q Consensus 24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev 58 (60)
.+++|++.|+++|.+ |..|.||||+|+.+|+.++
T Consensus 84 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~ 117 (167)
T 3v31_A 84 IVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKC 117 (167)
T ss_dssp HHHHHHHHTCCTTCC-CTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCCCCcC-CCCCCCHHHHHHHcCCHHH
Confidence 444444444444444 4444444444444444443
No 39
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.09 E-value=4e-11 Score=72.59 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=15.3
Q ss_pred HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955 24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV 58 (60)
Q Consensus 24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev 58 (60)
.+++|++.|+++|.+ +..|.||||+|+.+|+.++
T Consensus 116 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~ 149 (192)
T 2rfm_A 116 MSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEI 149 (192)
T ss_dssp HHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHH
Confidence 444444444444444 4444444444444444443
No 40
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.09 E-value=1.2e-11 Score=69.86 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=45.3
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus 28 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-d~~g~tpl~~A~~~~~~~~~~ 92 (115)
T 2l6b_A 28 LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHLAKKNGHHEIVK 92 (115)
T ss_dssp HTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCC-CTTCCCTTHHHHTTTCHHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHCCCHHHHH
Confidence 4567777777666555554 46888999999999998 889999999999999888763
No 41
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.09 E-value=5.8e-11 Score=70.93 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=29.2
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+++|.+++.....+.+++ .+.+++|++.|+++|.. |..|.||||+|+.+|+.+++
T Consensus 67 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v 129 (169)
T 2y1l_E 67 LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIV 129 (169)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHH
Confidence 344555554444444333 33555555666665555 55556666666655555554
No 42
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.08 E-value=6.5e-11 Score=69.48 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=49.6
Q ss_pred hhhcCCChhhccchHHHHH-------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM-------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m-------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus 24 Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 87 (162)
T 1ihb_A 24 LLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAGFLDTLQ 87 (162)
T ss_dssp HTTSCCCTTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHhCCCCccccCccCccHHHHHHcCcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 5678888888777776666 57899999999999999 999999999999999998864
No 43
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.07 E-value=9.2e-11 Score=75.97 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=43.7
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++|.+++.....+.+++ .+.++.|++.|+++|.+ |..|.||||+||.+|+.++|+
T Consensus 106 l~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~-d~~g~TpL~~A~~~g~~~~v~ 169 (269)
T 4b93_B 106 LKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK-DLSGNTPLIYACSGGHHELVA 169 (269)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCGGGHH
T ss_pred HhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCCHHHHH
Confidence 455666555555444444 45889999999999999 999999999999999999874
No 44
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.07 E-value=8.4e-11 Score=65.83 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=30.2
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+++|.+++.....+.+++ .+.+++|++.|++++.+ +..|.||||+|+.+|+.+++
T Consensus 55 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~ 117 (126)
T 1n0r_A 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117 (126)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCcHHHH
Confidence 344555544444433333 34556666666666665 66666666666666665554
No 45
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.07 E-value=6.5e-11 Score=74.59 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=47.7
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|.+++.....+.+++ .+.+++|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus 143 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~~~~~~v~ 207 (253)
T 1yyh_A 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAK 207 (253)
T ss_dssp HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHCCCHHHHH
Confidence 4567888888777776666 46889999999999998 999999999999999988864
No 46
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.07 E-value=7.3e-11 Score=66.09 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=47.5
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ .+.+++|++.|+++|.+ +..|.||||+|+..|+.++++
T Consensus 21 Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~ 85 (126)
T 1n0r_A 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVK 85 (126)
T ss_dssp HHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHcChHHHHH
Confidence 4567888877766666665 46889999999999999 999999999999999998864
No 47
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.06 E-value=7.1e-11 Score=71.46 Aligned_cols=57 Identities=26% Similarity=0.151 Sum_probs=49.6
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|++++.....+.+++ .+.+++|++.|++++.+ |..|.||||+|+.+|+.++++
T Consensus 120 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~v~ 184 (192)
T 2rfm_A 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARIFGRQEVIK 184 (192)
T ss_dssp HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCcHHHHH
Confidence 4677888888777766666 56899999999999999 999999999999999999874
No 48
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.06 E-value=5.9e-11 Score=76.54 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=34.8
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+++.|.+++.....+.+++ .+.+++|++ .|+++|.+ |..|.||||+|+.+|+.+++
T Consensus 202 Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~-d~~g~TpL~~A~~~g~~~iv 266 (276)
T 4hbd_A 202 LLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLT-DRDGSTALMVALDAGQSEIA 266 (276)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCC-CTTSCCHHHHHHHHTCHHHH
T ss_pred HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCc-CCCCCCHHHHHHHcCCHHHH
Confidence 3455666666665555555 346666666 66666666 66666666666666666654
No 49
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.06 E-value=5.5e-11 Score=78.50 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=47.0
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++..|++++.....+.+++ .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus 212 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~~~~~iv~ 276 (301)
T 2b0o_E 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEE 276 (301)
T ss_dssp HHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence 4567888888777777776 46888999999999998 899999999999999888763
No 50
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.06 E-value=5.6e-11 Score=76.67 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=44.2
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.|.+++.....+.+++ .+.+++|++.|+|+|.+ |..|.||||+|+.+|+.++|+
T Consensus 170 l~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 170 FRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp HHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHHH
Confidence 445555555444455555 56899999999999999 999999999999999998874
No 51
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.06 E-value=6.7e-11 Score=71.34 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=45.9
Q ss_pred hhhcC-CChhhccchHHHHH-------------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQG-INPEDARTFEERSM-------------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qG-i~iea~r~~~~~~m-------------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++| .+++.....+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus 125 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK-DNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp HHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc-CCCCCCHHHHHHHcCCHhHHH
Confidence 34566 67766666555554 56889999999999999 999999999999999999874
No 52
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.06 E-value=4.1e-11 Score=83.23 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=46.4
Q ss_pred hhhhcCCChhhc------cchHHHHH-----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 2 QRFVQGINPEDA------RTFEERSM-----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 2 ~~~~qGi~iea~------r~~~~~~m-----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
.++++|.+++.. ...+.+++ ++.+++||++|+|+|.+ |..|.||||+||.+|+.++|+
T Consensus 150 ~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~-d~~g~TpLh~A~~~g~~~~v~ 224 (497)
T 3lvq_E 150 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCLK 224 (497)
T ss_dssp HHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCC-CSSSCCHHHHHTTTTCHHHHH
T ss_pred HHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHcCCHHHHH
Confidence 356788887755 33333333 45789999999999999 999999999999999999874
No 53
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.05 E-value=7.5e-11 Score=69.83 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=49.4
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|.+++.....+.+++ .+.+++|++.|++++.. +..|.||||+|+.+|+.++++
T Consensus 88 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE-TDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHH
Confidence 4567888888777776666 56899999999999999 999999999999999999864
No 54
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.05 E-value=7.6e-11 Score=77.61 Aligned_cols=52 Identities=17% Similarity=0.030 Sum_probs=45.2
Q ss_pred hhhcCCChhh-ccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955 3 RFVQGINPED-ARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGY 55 (60)
Q Consensus 3 ~~~qGi~iea-~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~ 55 (60)
+.+.|++++. ....+.+++ ++.+++|++.|+++|.+ |..|.||||+|+.+|+
T Consensus 116 l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~-d~~g~TpLh~A~~~g~ 176 (327)
T 1sw6_A 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVN 176 (327)
T ss_dssp CTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC-CTTCCCHHHHHHHSSH
T ss_pred HHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhcc
Confidence 4567889988 677777777 56899999999999999 9999999999999988
No 55
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.04 E-value=6.1e-11 Score=79.22 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=31.5
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+++|++++.....+.+++ ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++|
T Consensus 298 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~L~~A~~~g~~~iv 360 (437)
T 1n11_A 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIV 360 (437)
T ss_dssp HHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHCChHHHH
Confidence 345555555555444444 23556666666666666 66666666666666666554
No 56
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.03 E-value=9.4e-11 Score=74.31 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=46.2
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.++.|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus 22 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 86 (261)
T 2xai_A 22 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVN 86 (261)
T ss_dssp HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 4667888887777766666 45788899999999988 888999999999998888764
No 57
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.03 E-value=1.6e-10 Score=71.17 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=45.8
Q ss_pred hhhcCCChhhccc-------------hHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDART-------------FEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r~-------------~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++++|.+++.... .+.+++ .+.+++|++.|+++|.+ |..|.||||+|+.+|+.+++
T Consensus 94 Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~L~~A~~~~~~~~~ 170 (232)
T 2rfa_A 94 LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ-DSLGNTVLHILILQPNKTFA 170 (232)
T ss_dssp HHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHTCSCHHHH
T ss_pred HHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCChHHH
Confidence 4567777776543 344554 56899999999999999 99999999999999998875
No 58
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.03 E-value=1.1e-10 Score=71.69 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=39.9
Q ss_pred hhhcCCChhhcc-chHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDAR-TFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r-~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|.+++... ..+.+++ .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus 135 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 135 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVR 200 (241)
T ss_dssp HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHH
T ss_pred HHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence 355677666655 3344444 45778888888888887 788888888888888877653
No 59
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.02 E-value=1.1e-10 Score=67.43 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.++.|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus 23 ~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~ 60 (137)
T 3c5r_A 23 IPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVE 60 (137)
T ss_dssp HHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHHH
Confidence 56899999999999999 999999999999999998864
No 60
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.02 E-value=1.3e-10 Score=71.06 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=29.8
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcC-CCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSG-CLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~G-advn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+++|.+++.....+.+++ .+.+++|++.| +++|.+ |..|.||||+|+.+|+.+++
T Consensus 127 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~~~~~~v 190 (228)
T 2dzn_A 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ-DKQGWTPLFHALAEGHGDAA 190 (228)
T ss_dssp HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCc-CCCCCCHHHHHHHcCCHHHH
Confidence 344555554444444443 34555666665 556655 56666666666666655554
No 61
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.02 E-value=1.5e-10 Score=70.70 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=16.8
Q ss_pred HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
.+++|++.|+++|.+ +..|.||||+|+.+|+.+++
T Consensus 140 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v 174 (223)
T 2f8y_A 140 AAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETA 174 (223)
T ss_dssp HHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCCCCCc-CCCCcCHHHHHHHcCCHHHH
Confidence 444444444444444 44444444444444444443
No 62
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.01 E-value=1.8e-10 Score=70.74 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=38.5
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++++|.+++.....+.+++ ++.+++|++.|+++|.+ |..|.||||+|+.+|+.+++
T Consensus 125 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v 188 (231)
T 3aji_A 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEA 188 (231)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-CCCCCCHHHHHHHCCCHHHH
Confidence 3456666666555555544 45677777777777777 77777777777777777765
No 63
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.99 E-value=2.2e-10 Score=69.98 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=49.6
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|++++.....+.+++ .+.+++|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus 144 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~i~~ 208 (223)
T 2f8y_A 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIVR 208 (223)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc-cccCCCHHHHHHHhcchHHHH
Confidence 4677888888777766666 56899999999999999 999999999999999999874
No 64
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.99 E-value=2.2e-10 Score=73.25 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++.+++|++.|+++|.+ +..|.||||+|+.+|+.++|
T Consensus 71 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv 107 (351)
T 3utm_A 71 VRIVQLLLQHGADVHAK-DKGGLVPLHNACSYGHYEVT 107 (351)
T ss_dssp HHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHCCCHHHH
Confidence 34445555555555544 44555555555555544443
No 65
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.99 E-value=2.1e-10 Score=71.29 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=34.5
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLS-SGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~-~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
+++|++++.....+.+++ ++.++.|++ .|+++|.+ |..|.||||+|+.+|+.+++
T Consensus 206 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~-~~~g~t~l~~A~~~~~~~i~ 269 (285)
T 1wdy_A 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKLKKIA 269 (285)
T ss_dssp HHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcccc-CCCCCcHHHHHHHcCcHHHH
Confidence 455666665555554444 346666666 67777766 66777777777777766665
No 66
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=98.99 E-value=2.7e-10 Score=68.41 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=44.9
Q ss_pred CCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 7 GINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 7 Gi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+.+++.....+.+++ .+.+++|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 89 (179)
T 3f6q_A 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASHGHRDIVQ 89 (179)
T ss_dssp TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence 556776666666665 56899999999999999 999999999999999998874
No 67
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.99 E-value=1.6e-10 Score=72.68 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=37.9
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.. ..+.+.+ ++.++.|++.|+++|.+ |..|.||||+||.+|+.++|+
T Consensus 24 ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~ 87 (239)
T 1ycs_B 24 RIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVK 87 (239)
T ss_dssp --------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence 56677777643 3345554 56899999999999999 999999999999999999874
No 68
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.99 E-value=1.6e-10 Score=76.22 Aligned_cols=57 Identities=28% Similarity=0.310 Sum_probs=45.1
Q ss_pred hhhcCCChhh------ccchHHHHH-----------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPED------ARTFEERSM-----------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea------~r~~~~~~m-----------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++..|.+++. ....+.+++ ++.+++|+++|+++|.+ |..|.||||+|+.+|+.++|+
T Consensus 170 ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-d~~G~TpLh~A~~~g~~~~v~ 243 (301)
T 2b0o_E 170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCLK 243 (301)
T ss_dssp HHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred HHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 4567777776 233333333 46789999999999999 999999999999999999874
No 69
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.98 E-value=1.1e-10 Score=76.47 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=36.8
Q ss_pred hhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 10 PEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 10 iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.....+.+++ .+.+++|++.|+|+|.. |..|.||||+|+.+|+.++|+
T Consensus 204 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~g~~~~v~ 261 (364)
T 3ljn_A 204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME-DNEHTVPLYLSVRAAMVLLTK 261 (364)
T ss_dssp TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTCCHHHHH
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhChHHHHH
Confidence 665555555554 45788888888888887 888888888888888877763
No 70
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.98 E-value=2.5e-11 Score=74.68 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=50.6
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|++++.....+.+++ .+.++.|++.|+++|.+ |..|.||||+|+.+|+.++++
T Consensus 169 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~i~~ 233 (241)
T 1k1a_A 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVARSRRVIDILR 233 (241)
T ss_dssp HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCTTTTCSSHHHHHHHT
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCc-CCCCCCHHHHHHhcCcHHHHh
Confidence 5678999988887777776 56899999999999999 999999999999999999875
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.98 E-value=2.3e-10 Score=66.87 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=48.7
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+++|++. ++++.. |..|.||||+|+.+|+.++++
T Consensus 87 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~-~~~g~t~l~~A~~~~~~~~v~ 150 (156)
T 1bd8_A 87 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR-DARGLTPLELALQRGAQDLVD 150 (156)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC-CTTSCCHHHHHHHSCCHHHHH
T ss_pred HHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc-CCCCCCHHHHHHHcCcHHHHH
Confidence 4678888888877777776 5689999999 999999 999999999999999999874
No 72
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.98 E-value=2.2e-10 Score=78.44 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=30.6
Q ss_pred hhhcCCChhhcc--chHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDAR--TFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r--~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++.+|++++... ..+.+++ ++.+++|+++|+++|.. |..|.||||+|+.+|+.++|
T Consensus 219 LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~-d~~G~TpLh~A~~~g~~~~v 284 (368)
T 3jue_A 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLA 284 (368)
T ss_dssp HHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHH
T ss_pred HHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCcHHHH
Confidence 345555555544 3333333 34556666666666665 66666666666666665554
No 73
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.97 E-value=2.2e-10 Score=72.55 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=42.5
Q ss_pred hhhcCCChhhccch---HHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTF---EERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~---~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+++..+.. +.+.+ ++.++.|++.|+++|.+ |..|.||||+||.+|+.++|+
T Consensus 4 ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~ 71 (229)
T 2vge_A 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVD 71 (229)
T ss_dssp ------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred hhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 56778877655543 44554 56899999999999999 999999999999999999874
No 74
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.97 E-value=3.3e-10 Score=69.25 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=44.4
Q ss_pred hhhcC--CChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQG--INPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qG--i~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++| .+++.....+.+++ .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus 91 Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 91 LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp HHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHH
Confidence 34566 66666666555555 56888999999999998 899999999999999888764
No 75
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.96 E-value=3.3e-10 Score=69.76 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=33.3
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++.|.+++.....+.+++ .+.+++|++.|+++|.. |..|.||||+|+.+|+.+++
T Consensus 131 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v 193 (237)
T 3b7b_A 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIAARENRYDCV 193 (237)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHTTCHHHH
T ss_pred HHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhCCHhHH
Confidence 445555555544444443 34666666666666666 66666666666666666654
No 76
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.96 E-value=3.5e-10 Score=70.84 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=45.6
Q ss_pred hhhcCCChhhccch-------------HHHHH--------HHHHHHHHH---cCCCCCCCCCCCCCcHHHHHHh--cCCc
Q psy9955 3 RFVQGINPEDARTF-------------EERSM--------LEDAKFWLS---SGCLGDVPNPKTGASALHVAAA--KGYI 56 (60)
Q Consensus 3 ~~~qGi~iea~r~~-------------~~~~m--------l~~~~~Ll~---~Gadvn~~~d~~G~TpLH~AA~--~G~~ 56 (60)
++++|++++..... +.+++ .+.+++|++ .|+++|.+ |..|.||||+|+. +|+.
T Consensus 109 Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~-d~~g~TpLh~A~~~~~~~~ 187 (256)
T 2etb_A 109 LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT-DSLGNTVLHALVMIADNSP 187 (256)
T ss_dssp HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSCH
T ss_pred HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCcc-CCCCCCHHHHHHHcccCCc
Confidence 56778888877664 55665 568999999 99999999 9999999999998 7777
Q ss_pred c
Q psy9955 57 K 57 (60)
Q Consensus 57 e 57 (60)
+
T Consensus 188 ~ 188 (256)
T 2etb_A 188 E 188 (256)
T ss_dssp H
T ss_pred h
Confidence 6
No 77
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.96 E-value=3.4e-10 Score=75.46 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=49.7
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.|++++.....+.+++ .+.+++|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus 153 l~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~ 216 (373)
T 2fo1_E 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMV 216 (373)
T ss_dssp HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred HhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc-CCCCCCHHHHHHHCCCHHHHH
Confidence 478999999888877777 56899999999999999 999999999999999998864
No 78
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=98.95 E-value=9.7e-11 Score=66.83 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=48.8
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|.+++.....+.+++ .+.+++|++.|++++.. |..|.||||+|+..+..+++|
T Consensus 59 Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~ll~ 123 (123)
T 3aaa_C 59 LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDNQAIKALLQ 123 (123)
T ss_dssp HHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCCCHHHHHHHC
T ss_pred HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHhCCHHHHHHhC
Confidence 5678999988888777776 56899999999999999 999999999998777777654
No 79
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=98.95 E-value=2e-10 Score=71.81 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=45.3
Q ss_pred hhhcCCC---hhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGIN---PEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~---iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|.+ ++.....+.+++ ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus 28 Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~~~~~~v~ 95 (282)
T 1oy3_D 28 LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHTALHLACRVRAHTCAC 95 (282)
T ss_dssp HHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCCHHHHHTTTTCHHHHH
T ss_pred HHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCcchhH
Confidence 3445555 566556666665 56899999999999999 999999999999999998864
No 80
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=98.95 E-value=6.9e-11 Score=73.45 Aligned_cols=30 Identities=13% Similarity=-0.113 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCCCCCCCCCCC-cHHHHHHhcC
Q psy9955 24 DAKFWLSSGCLGDVPNPKTGA-SALHVAAAKG 54 (60)
Q Consensus 24 ~~~~Ll~~Gadvn~~~d~~G~-TpLH~AA~~G 54 (60)
.+++|+++|+|+|.+ |..|. ||||+|+.+|
T Consensus 96 iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~ 126 (186)
T 3t8k_A 96 LCKIFLEKGADITAL-YKPYKIVVFKNIFNYF 126 (186)
T ss_dssp HHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCC
T ss_pred HHHHHHHCCCCCCcc-CCCcCchHHHHHHHcC
Confidence 344555555555555 55555 5555555433
No 81
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=98.95 E-value=5.8e-10 Score=63.19 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.++.|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus 37 ~~~v~~Ll~~g~~i~~~-d~~g~tpLh~A~~~~~~~~v~ 74 (110)
T 2zgd_A 37 DDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVK 74 (110)
T ss_dssp HHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHH
Confidence 56899999999999999 999999999999999998874
No 82
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.94 E-value=2.8e-10 Score=73.52 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=36.4
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++... +.+++ ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++|+
T Consensus 50 Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~t~L~~A~~~g~~~~v~ 112 (285)
T 3kea_A 50 LLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQF-DDKGNTALYYAVDSGNMQTVK 112 (285)
T ss_dssp HHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCcHHHHHHHcCCHHHHH
Confidence 445666666553 33333 34677777777777777 777777777777777777653
No 83
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.94 E-value=4.8e-10 Score=69.62 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=45.5
Q ss_pred CCChhhccchHHHHH------------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 7 GINPEDARTFEERSM------------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 7 Gi~iea~r~~~~~~m------------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
|.+++.....+.+++ .+.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus 172 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHH
Confidence 788877766666655 56789999999999999 999999999999999998874
No 84
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.93 E-value=4.5e-10 Score=76.90 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=50.8
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.+|++++.....+.+++ .+.+++|+++|+++|.. |..|.||||+|+..|+.++++
T Consensus 254 LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~-d~~G~TpL~~A~~~g~~~iv~ 318 (368)
T 3jue_A 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIAMETANADIVT 318 (368)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCc-CCCCCCHHHHHHHCCCHHHHH
Confidence 5678999998888877777 46899999999999999 999999999999999999874
No 85
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.93 E-value=5.7e-10 Score=67.22 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=39.4
Q ss_pred CChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 8 INPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 8 i~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
.+++.....+.+++ ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~ 89 (201)
T 3hra_A 30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQGRTEILA 89 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 36666666655555 45788888888888888 888888888888888887763
No 86
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=98.93 E-value=5e-10 Score=66.14 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=42.7
Q ss_pred cCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 6 QGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 6 qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
.+++++.....+.+++ ++.+++|++.|+++|.+ +..|.||||+|+.+|+.++++
T Consensus 31 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~ 92 (165)
T 3twr_A 31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAE 92 (165)
T ss_dssp TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHHHHcCcHHHHH
Confidence 3444444444444444 57899999999999999 999999999999999999874
No 87
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.93 E-value=4e-10 Score=69.37 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=47.7
Q ss_pred hhhcCCChhhccchHHHHH--------HHHH----HHHHHcCCCC------CCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDA----KFWLSSGCLG------DVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~----~~Ll~~Gadv------n~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++|++++.....+.+++ .+.+ ++|++.|+++ |.+ |..|.||||+|+.+|+.++|+
T Consensus 140 Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~-~~~g~tpl~~A~~~g~~~~v~ 214 (232)
T 2rfa_A 140 LIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVP-NNQGLTPFKLAGVEGNIVMFQ 214 (232)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCC-CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccC-CCCCCCHHHHHHHcCCHHHHH
Confidence 5678999988887777776 2344 9999999998 577 999999999999999999874
No 88
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.93 E-value=4.7e-10 Score=70.22 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=43.8
Q ss_pred hhhcCCChhhcc--------------chHHHHH--------HHHHHHHHH---cCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955 3 RFVQGINPEDAR--------------TFEERSM--------LEDAKFWLS---SGCLGDVPNPKTGASALHVAAAKGY 55 (60)
Q Consensus 3 ~~~qGi~iea~r--------------~~~~~~m--------l~~~~~Ll~---~Gadvn~~~d~~G~TpLH~AA~~G~ 55 (60)
++++|++++... ..+.+++ .+.+++|++ .|+++|.+ |..|.||||+|+..|+
T Consensus 112 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~-d~~g~TpLh~A~~~~~ 188 (260)
T 3jxi_A 112 LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIAD 188 (260)
T ss_dssp HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCC
T ss_pred HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCccc-CCCCCcHHHHHHHhcc
Confidence 467788888776 3455555 569999999 99999999 9999999999998877
No 89
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.93 E-value=8.5e-11 Score=72.91 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCCCCCCCC-CCCcHHHHHHhcCCcccc
Q psy9955 22 LEDAKFWLSSGCLGDVPNPK-TGASALHVAAAKGYIKVM 59 (60)
Q Consensus 22 l~~~~~Ll~~Gadvn~~~d~-~G~TpLH~AA~~G~~evv 59 (60)
.+.+++|++.|+++|.+ +. .|.||||+|+.+|+.++|
T Consensus 130 ~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~~~~~~~v 167 (236)
T 1ikn_D 130 LGIVELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLV 167 (236)
T ss_dssp HHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHH
Confidence 45566666666666666 44 666666666666666554
No 90
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.93 E-value=2.3e-10 Score=75.00 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=44.5
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCC-----CCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCL-----GDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gad-----vn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|.+++.....+.+++ .+.+++|++.|++ +|.. +..|.||||+||.+|+.++|+
T Consensus 159 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~ 228 (364)
T 3ljn_A 159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINWEDVAM 228 (364)
T ss_dssp HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTCHHHHH
T ss_pred HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCCHHHHH
Confidence 4566778777777666666 4578888888888 8888 888888888888888888764
No 91
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.93 E-value=1e-10 Score=73.25 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=45.8
Q ss_pred cCCChhhccchHHHHH-----------------HHHHHHHHHcCCCC-------CCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 6 QGINPEDARTFEERSM-----------------LEDAKFWLSSGCLG-------DVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 6 qGi~iea~r~~~~~~m-----------------l~~~~~Ll~~Gadv-------n~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
.|++++.....+.+++ .+.+++|++.|+++ |.+ |..|.||||+|+.+|+.++|+
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~-d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALL-NNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcc-cCCCCCHHHHHHHcCCHHHHH
Confidence 7888887777665555 36788999999999 668 999999999999999999874
No 92
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.93 E-value=4.8e-10 Score=70.95 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=44.4
Q ss_pred hhhcCCChhhccc--------------hHHHHH--------HHHHHHHHH---cCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955 3 RFVQGINPEDART--------------FEERSM--------LEDAKFWLS---SGCLGDVPNPKTGASALHVAAAKGY 55 (60)
Q Consensus 3 ~~~qGi~iea~r~--------------~~~~~m--------l~~~~~Ll~---~Gadvn~~~d~~G~TpLH~AA~~G~ 55 (60)
++++|.+++.... .+.+++ .+.+++|++ .|+++|.+ |..|.||||+|+..|+
T Consensus 120 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~-d~~g~tpLh~A~~~~~ 196 (273)
T 2pnn_A 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR-DSVGNTVLHALVEVAD 196 (273)
T ss_dssp HHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCC
T ss_pred HHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceee-CCCCCcHHHHHHHccC
Confidence 5677888888775 455665 568999999 99999999 9999999999999988
No 93
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.92 E-value=4.2e-10 Score=75.01 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=47.2
Q ss_pred hhcC-CChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 4 FVQG-INPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 4 ~~qG-i~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++| ++++.....+.++| ++.+++|+++|+++|.. |..|.||||+|+.+|+.++|+
T Consensus 299 l~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~-d~~g~t~l~~A~~~g~~~iv~ 363 (373)
T 2fo1_E 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV-DATDHTARQLAQANNHHNIVD 363 (373)
T ss_dssp HHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CSSSCCHHHHHHHTTCHHHHH
T ss_pred HHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 4444 88888777777776 56899999999999999 999999999999999999874
No 94
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.92 E-value=5.2e-10 Score=74.70 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=49.9
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++++|.+++.....+.+++ .+.+++|+++|+++|.. |..|.||||+|+.+||.+++
T Consensus 330 Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~-~~~g~t~l~~A~~~g~~~~~ 393 (437)
T 1n11_A 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV-SSDGTTPLAIAKRLGYISVT 393 (437)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CSSSCCHHHHHHHTTCHHHH
T ss_pred HHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCcHHHH
Confidence 5678999998887777776 56999999999999999 99999999999999998875
No 95
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.92 E-value=4.5e-10 Score=72.39 Aligned_cols=56 Identities=16% Similarity=0.069 Sum_probs=40.6
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++++|.+++.....+.+++ .+.+++|++.|+++|.. +..|.||||+|+.+|+.+++
T Consensus 78 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~~v 141 (285)
T 3d9h_A 78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCV 141 (285)
T ss_dssp HHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHH
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCHHHHH
Confidence 4566777776666665555 45777888888888877 77888888888888877765
No 96
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=98.92 E-value=5.9e-10 Score=72.70 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.+++|+++|+++|.+ |..|.||||+||.+|+.++|+
T Consensus 185 ~~~v~~Ll~~ga~in~~-d~~g~TpLh~A~~~g~~~~v~ 222 (278)
T 1dcq_A 185 LHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLTDNAECLK 222 (278)
T ss_dssp HHHHHHHHHHCSCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCCCCcccc-CCCCCCHHHHHHHcCCHHHHH
Confidence 45788999999999999 999999999999999999874
No 97
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.92 E-value=6.1e-10 Score=68.32 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
.+++|++.|+++|.+ +..|.||||+|+.+|+.+++
T Consensus 88 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~ 122 (231)
T 3aji_A 88 IVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIA 122 (231)
T ss_dssp HHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHH
Confidence 445555555555554 55555555555555554443
No 98
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.91 E-value=1.2e-10 Score=72.93 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=46.3
Q ss_pred cCCChhhccchHHHHHH----------H-------HHHHHHHcCCCC-------CCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 6 QGINPEDARTFEERSML----------E-------DAKFWLSSGCLG-------DVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 6 qGi~iea~r~~~~~~ml----------~-------~~~~Ll~~Gadv-------n~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
.|++++.....+.+++. + .+++|++.|+++ |.+ |..|.||||+|+.+|+.++|+
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~-d~~g~tpL~~A~~~g~~~~v~ 238 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTPLKLAAKEGKIEIFR 238 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc-CCCCCCHHHHHHHhCCHHHHH
Confidence 78888887777666651 2 789999999999 888 999999999999999999874
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=98.90 E-value=1.7e-10 Score=71.25 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=49.7
Q ss_pred hhhc-CCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQ-GINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~q-Gi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++++ |++++.....+.+++ .+.+++|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus 125 Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~l~ 190 (222)
T 3ehr_A 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-NIEKKLAFDMATNAACASLLK 190 (222)
T ss_dssp HTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCC-CTTSCCHHHHCCSHHHHHHHC
T ss_pred HHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCCHHHHhcchhHHHHHH
Confidence 4566 889988888877776 46899999999999999 999999999999999988875
No 100
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.90 E-value=7.5e-10 Score=67.42 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=44.5
Q ss_pred hhhcCCChhhccc-hHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDART-FEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~-~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+.+.|.+++.... .+.+++ .+.++.|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus 162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~v~ 227 (240)
T 3eu9_A 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ-NIKGESALDLAKQRKNVWMIN 227 (240)
T ss_dssp HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCB-CTTSCBHHHHHHHTTCHHHHH
T ss_pred HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHH
Confidence 3456677776654 444444 56889999999999999 999999999999999998874
No 101
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.89 E-value=8.3e-10 Score=67.97 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=38.2
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++++|++++.....+.+++ ++.+++|++.|++++.. +..|.||||+|+.+|+.+++
T Consensus 30 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~ 93 (237)
T 3b7b_A 30 LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVV 93 (237)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHH
Confidence 4556666666655555554 45677777777777777 77777777777777777665
No 102
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=98.87 E-value=9.2e-10 Score=66.68 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=46.0
Q ss_pred hhhcCCChhhcc-chHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955 3 RFVQGINPEDAR-TFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV 58 (60)
Q Consensus 3 ~~~qGi~iea~r-~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~ev 58 (60)
++++|.+++... ..+.+++ .+.+++|++.|+++|.+ |..|.||||+|+..|+.+.
T Consensus 95 Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~ 158 (183)
T 3deo_A 95 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTP 158 (183)
T ss_dssp HHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHHHTCC
T ss_pred HHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCC-CCCCCCHHHHHHHhccCcc
Confidence 567899998877 6666666 56899999999999999 9999999999998765544
No 103
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.87 E-value=8.3e-10 Score=69.92 Aligned_cols=54 Identities=20% Similarity=0.105 Sum_probs=26.3
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++.|.+++.....+.+++ .+.+++|++.|+++|. +..|.||||+|+.+|+.+++
T Consensus 121 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~Lh~A~~~~~~~~v 182 (261)
T 2xai_A 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVARTASEELA 182 (261)
T ss_dssp HHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC--CBTTBCHHHHHHHHTCHHHH
T ss_pred HHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC--CCCCCChHHHHHHcCCHHHH
Confidence 344444444444443333 2345555555555552 44555555555555555543
No 104
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.86 E-value=4.4e-10 Score=72.59 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=47.0
Q ss_pred hhhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCC-CcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTG-ASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G-~TpLH~AA~~G~~evvk 60 (60)
++++|.+++.....+.+++ ++.+++|++.|+++|.. +..| .||||+|+.+|+.++++
T Consensus 81 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~ 146 (285)
T 3kea_A 81 LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVS 146 (285)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHH
T ss_pred HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHH
Confidence 4677888888777776666 56899999999999998 8888 79999999999988764
No 105
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.83 E-value=2e-09 Score=66.64 Aligned_cols=57 Identities=9% Similarity=0.079 Sum_probs=42.5
Q ss_pred hhhcCCChhhccc-hHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 3 RFVQGINPEDART-FEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 3 ~~~qGi~iea~r~-~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
+++.|++++.... .+.+++ .+.+++|++.|+++|.. +..|.||||+|+.+|+.++++
T Consensus 136 Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~~~ 201 (236)
T 1ikn_D 136 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQ 201 (236)
T ss_dssp HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCC-CTTCCCGGGGCTTSSCHHHHH
T ss_pred HHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-cCCCCCHHHHHHccCchHHHH
Confidence 4566777777665 555555 45788888888888888 888888888888888887763
No 106
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.81 E-value=2.2e-09 Score=69.11 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=28.6
Q ss_pred hhcCCChhhccchHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 4 FVQGINPEDARTFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
++.|.+++.....+.+++ .+.+++|++.|+++| . +..|.||||+|+.+|+.+++
T Consensus 177 l~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~-~~~g~t~L~~A~~~~~~~~v 238 (285)
T 3d9h_A 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-Q-GKGQDSPLHAVVRTASEELA 238 (285)
T ss_dssp HHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-C-CBTTBCHHHHHHHTTCHHHH
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC-C-CCCCCCHHHHHHHcCCHHHH
Confidence 344555554444444444 345555556666555 2 55555666666665555554
No 107
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=98.80 E-value=2.8e-09 Score=67.55 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
.+.+++|++.|+++|.+ |..|.||||+|+.+|+.++|+
T Consensus 212 ~~~v~~Ll~~g~d~~~~-d~~g~tpL~~A~~~~~~~~v~ 249 (299)
T 1s70_B 212 TEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEACR 249 (299)
T ss_dssp HHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCCCCCc-CCCCCcHHHHHHhcCCHHHHH
Confidence 46899999999999999 999999999999999998874
No 108
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.80 E-value=6.1e-10 Score=70.47 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=44.9
Q ss_pred cCCChhhccchHHHHH-----------------HHHHHHHHHcCCCCCC-------CCCCCCCcHHHHHHhcCCccccC
Q psy9955 6 QGINPEDARTFEERSM-----------------LEDAKFWLSSGCLGDV-------PNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 6 qGi~iea~r~~~~~~m-----------------l~~~~~Ll~~Gadvn~-------~~d~~G~TpLH~AA~~G~~evvk 60 (60)
.|++++.....+.+++ .+.+++|++.|+++|. + |..|.||||+|+.+|+.++|+
T Consensus 173 ~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~-d~~g~TpL~~A~~~g~~~iv~ 250 (273)
T 2pnn_A 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT-NRKGLTPLALAASSGKIGVLA 250 (273)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred CCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccccccc-CCCCCCHHHHHHHhChHHHHH
Confidence 7888887776655554 3567789999999974 7 999999999999999999874
No 109
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.79 E-value=1.3e-09 Score=69.17 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=42.4
Q ss_pred hhhcCCChhhcc-chHHHHH--------HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhc
Q psy9955 3 RFVQGINPEDAR-TFEERSM--------LEDAKFWLSSGCLGDVPNPKTGASALHVAAAK 53 (60)
Q Consensus 3 ~~~qGi~iea~r-~~~~~~m--------l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~ 53 (60)
++++|.+++... ..+.+++ .+.+++|+++|+++|.+ |..|.||||+|+..
T Consensus 96 Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~ 154 (244)
T 3ui2_A 96 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREI 154 (244)
T ss_dssp HHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred HHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHH
Confidence 567899998887 5566666 56899999999999999 99999999999854
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=98.77 E-value=1.7e-09 Score=60.76 Aligned_cols=38 Identities=34% Similarity=0.469 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 22 l~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.++.|++.|+++|.. |..|.||||+|+.+|+.++++
T Consensus 22 ~~~~~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~~~ 59 (115)
T 2l6b_A 22 AEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVK 59 (115)
T ss_dssp HHHHHHHTTTTCCSSCC-CSSSCCTTHHHHTTTCHHHHH
T ss_pred HHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHH
Confidence 56799999999999999 999999999999999998864
No 111
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.71 E-value=6.6e-09 Score=63.18 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=17.7
Q ss_pred HHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCCcccc
Q psy9955 24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59 (60)
Q Consensus 24 ~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~~evv 59 (60)
.++.|++.|++++.+ +..|.||||+|+.+|+.+++
T Consensus 91 ~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~ 125 (240)
T 3eu9_A 91 MVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIV 125 (240)
T ss_dssp HHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHH
Confidence 445555555555554 55555555555555554443
No 112
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.63 E-value=1.3e-08 Score=66.83 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCCCCCC-CCCCCCCcHHHHHHhcCCccccC
Q psy9955 20 SMLEDAKFWLSSGCLGDV-PNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 20 ~ml~~~~~Ll~~Gadvn~-~~d~~G~TpLH~AA~~G~~evvk 60 (60)
.+.+.+++|++.|+++|. . |..|.||||+||.+|+.++|+
T Consensus 108 ~~~~~~~~l~~~g~dvn~~~-d~~g~TpLh~Aa~~g~~~~v~ 148 (327)
T 1sw6_A 108 LLQEVNDAFPNTQLNLNIPV-DEHGNTPLHWLTSIANLELVK 148 (327)
T ss_dssp HHHHHHHHCTTSCCCSCSCC-STTCCCHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHhcCCCccccc-CCCCCcHHHHHHHcCCHHHHH
Confidence 345678899999999999 7 999999999999999999874
No 113
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.40 E-value=8.1e-09 Score=70.72 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCCCC--CCCCCCCcHHHHHH-hcCCccccC
Q psy9955 22 LEDAKFWLSSGCLGDV--PNPKTGASALHVAA-AKGYIKVMK 60 (60)
Q Consensus 22 l~~~~~Ll~~Gadvn~--~~d~~G~TpLH~AA-~~G~~evvk 60 (60)
++.+++|+++|++++. . |..|.||||+|| .+||.++||
T Consensus 176 ~eiv~~Ll~~ga~~~~~~~-d~~g~TpL~~Aa~~~G~~eiv~ 216 (376)
T 2aja_A 176 LHVLNRLCELAPTEATAMI-QAENYYAFRWAAVGRGHHNVIN 216 (376)
T ss_dssp HHHHHHHHHSCGGGHHHHH-HHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHcCCccchhcc-CCCCCCHHHHHHHHCCCHHHHH
Confidence 4689999999999877 7 888999999999 999998874
No 114
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.06 E-value=4e-07 Score=62.28 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCC---CCCCCCCCCcHHHHHHhcCCccccC
Q psy9955 22 LEDAKFWLSSGCLG---DVPNPKTGASALHVAAAKGYIKVMK 60 (60)
Q Consensus 22 l~~~~~Ll~~Gadv---n~~~d~~G~TpLH~AA~~G~~evvk 60 (60)
++.+++|++.|+|+ +.. +.+ .||||+||.+||.++||
T Consensus 141 ~eiv~~Ll~~gad~~~~~i~-~~~-~TpLh~Aa~~G~~eiv~ 180 (376)
T 2aja_A 141 LHVLNRLCELAPTEIMAMIQ-AEN-YHAFRLAAENGHLHVLN 180 (376)
T ss_dssp HHHHHHHHHSCTTTHHHHHS-HHH-HHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccccC-CCC-CCHHHHHHHCCCHHHHH
Confidence 46788888888752 332 333 88888888888888764
No 115
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=52.36 E-value=9.3 Score=23.05 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=34.3
Q ss_pred ChhhccchHHHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcC
Q psy9955 9 NPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKG 54 (60)
Q Consensus 9 ~iea~r~~~~~~ml~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G 54 (60)
+++....++++.|.+.++.+++.|+++=...-.=+.-++|+-+..|
T Consensus 49 ~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~g 94 (159)
T 1ass_A 49 KIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG 94 (159)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCSEEEESSCBCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhhCCCeEEEECCccCHHHHHHHHHCC
Confidence 4556667889999999999999999974331233556888888776
No 116
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=47.56 E-value=12 Score=22.87 Aligned_cols=47 Identities=9% Similarity=-0.108 Sum_probs=34.2
Q ss_pred ChhhccchHHHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHhcCC
Q psy9955 9 NPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGY 55 (60)
Q Consensus 9 ~iea~r~~~~~~ml~~~~~Ll~~Gadvn~~~d~~G~TpLH~AA~~G~ 55 (60)
+++....++++.+.+.++.+++.|+++=...-.=+.-++|+-+..|=
T Consensus 55 ~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~gI 101 (178)
T 1gml_A 55 DFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANV 101 (178)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCcccHHHHHHHHHCCC
Confidence 44556667889999999999999999743312235567888887773
No 117
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=40.85 E-value=16 Score=23.86 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=32.3
Q ss_pred hccchHHHHHHHHHHHHHHc--C--CCCCCCCCCCCCc-HHHHHHhcCCccc
Q psy9955 12 DARTFEERSMLEDAKFWLSS--G--CLGDVPNPKTGAS-ALHVAAAKGYIKV 58 (60)
Q Consensus 12 a~r~~~~~~ml~~~~~Ll~~--G--advn~~~d~~G~T-pLH~AA~~G~~ev 58 (60)
...-.+...+-+.++.+|+. | .+|+.. ..-|.| +++-|-.+|..|+
T Consensus 15 ~~~~te~~il~~i~~~~Le~~~G~~~~V~~~-~~lg~~~~~~~al~~G~iDv 65 (282)
T 3o66_A 15 ALSTSESQIISHMLRLLIEHDTHGKIKPTLV-NNLGSSTIQHNALINGDANI 65 (282)
T ss_dssp EESSHHHHHHHHHHHHHHHHHTTTSCCCEEE-EEESSHHHHHHHHHHTSCSE
T ss_pred cCCCcHHHHHHHHHHHHHHhccCCceeEEEE-ecCCCcHHHHHHHHcCCCCE
Confidence 33334666777889998875 6 777776 545665 6677778998886
No 118
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=39.50 E-value=14 Score=23.94 Aligned_cols=39 Identities=13% Similarity=-0.043 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955 19 RSMLEDAKFWLSS-GCLGDVPNPKTGASALHVAAAKGYIKV 58 (60)
Q Consensus 19 ~~ml~~~~~Ll~~-Gadvn~~~d~~G~TpLH~AA~~G~~ev 58 (60)
..+...++.+|+. |.+|+.. ...+..+++-|-.+|..++
T Consensus 21 ~~~~~i~~~~Le~~Gy~Ve~~-~~~~~~~~~~Al~~G~iDi 60 (309)
T 1r9l_A 21 TFQTLLVSRALEKLGYTVNKP-SEVDYNVGYTSLASGDATF 60 (309)
T ss_dssp HHHHHHHHHHHHHTTCEECCC-EECCHHHHHHHHHHTSSCE
T ss_pred HHHHHHHHHHHHHcCCCeEEe-ecCchHHHHHHHhcCCceE
Confidence 4445566777765 8888765 4446677788889998876
No 119
>3mol_A Heme acquisition protein hasap; hemophore, heme transport, H32A mutation, holo protein, heme protein, transport protein; HET: HEM; 1.20A {Pseudomonas aeruginosa} PDB: 3mom_A* 3mok_A 3ell_A
Probab=36.90 E-value=31 Score=21.94 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHH---cCCCCCCC
Q psy9955 18 ERSMLEDAKFWLS---SGCLGDVP 38 (60)
Q Consensus 18 ~~~ml~~~~~Ll~---~Gadvn~~ 38 (60)
..+|++.++-||. .|.|||.+
T Consensus 145 a~plLeiLkA~~~~~~~gidvntp 168 (184)
T 3mol_A 145 SSALQGQIDALLKAVDPSLSINST 168 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTSB
T ss_pred cHHHHHHHHhhhhcccCCcccCCc
Confidence 3578999998877 89999864
No 120
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=36.44 E-value=18 Score=23.56 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHc--CCCCCCCCCCCCCc-HHHHHHhcCCcccc
Q psy9955 16 FEERSMLEDAKFWLSS--GCLGDVPNPKTGAS-ALHVAAAKGYIKVM 59 (60)
Q Consensus 16 ~~~~~ml~~~~~Ll~~--Gadvn~~~d~~G~T-pLH~AA~~G~~evv 59 (60)
.+...+-+.++.+|+. |.+|+.. ..-|.| +++-|-.+|..|+.
T Consensus 22 te~~il~~i~~~~Le~~~G~~V~~~-~~lg~~~~~~~al~~G~iDv~ 67 (284)
T 3r6u_A 22 SESEIIASMLGQLIEHHTDLKTTTI-KNLGSNAVQQQALMNGEIDIA 67 (284)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCEEEE-EEECSHHHHHHHHHTTSCSEE
T ss_pred cHHHHHHHHHHHHHHhcCCCCeEEE-ecCCchHHHHHHHHcCCCCEE
Confidence 4666777888898864 7788776 555555 66777789988863
No 121
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=34.83 E-value=14 Score=23.35 Aligned_cols=40 Identities=10% Similarity=-0.006 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955 17 EERSMLEDAKFWLSS-GCLGDVPNPKTGASALHVAAAKGYIKV 58 (60)
Q Consensus 17 ~~~~ml~~~~~Ll~~-Gadvn~~~d~~G~TpLH~AA~~G~~ev 58 (60)
+...+-+.++.+|+. |.+|+.. . .+.++++-|-.+|..++
T Consensus 13 e~~i~~~i~~~~Le~~G~~Ve~~-~-~~~~~~~~al~~G~iD~ 53 (256)
T 3l6g_A 13 SEVASINVLTQAMKEHGFDVKTT-A-LDNAVAWQTVANGQADG 53 (256)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEE-E-CCHHHHHHHHHTTSSSE
T ss_pred HHHHHHHHHHHHHHHCCCceEEE-E-CChHHHHHHHHCCCCeE
Confidence 556667888888874 6666665 4 24556777779998876
No 122
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=30.56 E-value=31 Score=22.11 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHH-HcCCCCCCCCCCCCCcHHHHHHhcCCccc
Q psy9955 17 EERSMLEDAKFWL-SSGCLGDVPNPKTGASALHVAAAKGYIKV 58 (60)
Q Consensus 17 ~~~~ml~~~~~Ll-~~Gadvn~~~d~~G~TpLH~AA~~G~~ev 58 (60)
+...+.+.++.+| +.|.+|+.. . .+..|++-|-.+|..++
T Consensus 176 e~~~~~~v~~~~Le~~Gy~Ve~~-~-~~~~~~~~al~~G~iD~ 216 (268)
T 2b4l_A 176 SEIASTNVIGKVLEDLGYEVTLT-Q-VEAGPMWTAIATGSADA 216 (268)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEE-E-CCTTHHHHHHHHTSSSE
T ss_pred HHHHHHHHHHHHHHHcCCceEEE-E-CChHHHHHHHHCCCCeE
Confidence 3455566666655 478888877 5 57788888889998876
No 123
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=26.19 E-value=19 Score=23.08 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=16.5
Q ss_pred CCCCCCCCCcHHHHHHhcCCcc
Q psy9955 36 DVPNPKTGASALHVAAAKGYIK 57 (60)
Q Consensus 36 n~~~d~~G~TpLH~AA~~G~~e 57 (60)
|.. +....+||.+|-.+||.+
T Consensus 14 dW~-p~~~~ap~~vA~~kG~f~ 34 (342)
T 4esw_A 14 NWE-AAPYHIPVYLANIKGYFK 34 (342)
T ss_dssp SSS-SCGGGHHHHHHHHTTHHH
T ss_pred CCE-eCcChHHHHHHHHCCchH
Confidence 444 666789999999999854
No 124
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=26.09 E-value=64 Score=20.18 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHH-HcCCCCCCCCCCCC-CcHHHHHHhcCCccc
Q psy9955 18 ERSMLEDAKFWL-SSGCLGDVPNPKTG-ASALHVAAAKGYIKV 58 (60)
Q Consensus 18 ~~~ml~~~~~Ll-~~Gadvn~~~d~~G-~TpLH~AA~~G~~ev 58 (60)
...+.+.++.++ +.|.+|+.. ...| ..+++-|-.+|..|+
T Consensus 18 ~~~~~~~~~~~le~~G~~Ve~~-~~~g~~~~~~~al~~G~iD~ 59 (275)
T 1sw5_A 18 QYILANMIAILLEENGYKAEVK-EGLGGTLVNYEALKRNDIQL 59 (275)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEC-TTCCSHHHHHHHHHHTSSSE
T ss_pred HHHHHHHHHHHHHHcCCcEEEE-eCCCchHHHHHHHHcCCCcE
Confidence 344455666555 568888877 6444 567777889998876
No 125
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=25.99 E-value=58 Score=19.92 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=25.4
Q ss_pred hhcCCChhhccchHHHHHHHHHHHHHHcCCCCC
Q psy9955 4 FVQGINPEDARTFEERSMLEDAKFWLSSGCLGD 36 (60)
Q Consensus 4 ~~qGi~iea~r~~~~~~ml~~~~~Ll~~Gadvn 36 (60)
.+.|++.+.++..=.+.+.-..+++++.|.++.
T Consensus 191 ~~~Gl~~~~a~~~~~~~~~gs~~~~~~~~~~p~ 223 (247)
T 3gt0_A 191 VLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPG 223 (247)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHSCC---
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 357899999998888888888989888887763
No 126
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=24.13 E-value=66 Score=18.28 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=25.8
Q ss_pred hhhhcCCChhh---ccchHHHHHHHHHHHHHHcCCCCCC
Q psy9955 2 QRFVQGINPED---ARTFEERSMLEDAKFWLSSGCLGDV 37 (60)
Q Consensus 2 ~~~~qGi~iea---~r~~~~~~ml~~~~~Ll~~Gadvn~ 37 (60)
|+.++|.++++ .|.-...++..-+..++..|-.+|.
T Consensus 27 ~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~i 65 (122)
T 3iuo_A 27 QQIDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRINI 65 (122)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccCH
Confidence 67888987765 3444677777778888888875554
No 127
>1dk0_A HASA, heme-binding protein A; protein-heme complex, two heme insertions, transport protein; HET: HEM; 1.77A {Serratia marcescens} SCOP: d.35.1.1 PDB: 1b2v_A* 1dkh_A* 3csl_C* 3csn_C 3ddr_C* 2uyd_X* 1ybj_A 2cn4_A*
Probab=22.75 E-value=74 Score=20.27 Aligned_cols=20 Identities=10% Similarity=-0.066 Sum_probs=15.6
Q ss_pred HHHHHHHHHHH-HcCCCCCCC
Q psy9955 19 RSMLEDAKFWL-SSGCLGDVP 38 (60)
Q Consensus 19 ~~ml~~~~~Ll-~~Gadvn~~ 38 (60)
.+|++.++-|| .+|.|||.+
T Consensus 145 ~plLeiL~~~l~a~GIdVntp 165 (188)
T 1dk0_A 145 GALETALNGILDDYGLSVNST 165 (188)
T ss_dssp HHHHHHHHHHHGGGTCCTTSB
T ss_pred HHHHHHHHhhhhcCCcccCCc
Confidence 67888888666 679998864
No 128
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=22.53 E-value=69 Score=20.72 Aligned_cols=19 Identities=26% Similarity=0.020 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHcCCC
Q psy9955 16 FEERSMLEDAKFWLSSGCL 34 (60)
Q Consensus 16 ~~~~~ml~~~~~Ll~~Gad 34 (60)
.+...|.+|++.+.+.|+|
T Consensus 73 ~E~~~M~~Di~~~~~~Gad 91 (224)
T 2bdq_A 73 LELRIMEEDILRAVELESD 91 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4788999999999999998
Done!