RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9955
(60 letters)
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 49.0 bits (118), Expect = 4e-09
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 6 QGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
QG++ E AR EER ML DA+ WL+SG + DV + K+G +ALHVAAAKGY +V+K
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Score = 30.2 bits (69), Expect = 0.023
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E+ L G D+ N G +ALH A + ++K
Sbjct: 53 TEEVLRLLERGA--DI-NYANVDGLTALHQACIDDNVDMVK 90
Score = 27.1 bits (61), Expect = 0.26
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
++ KF + +G ++ N G LH AA+ GY+ + +
Sbjct: 86 VDMVKFLVENG--ANI-NQPDNEGWIPLHAAASCGYLDIAE 123
Score = 24.4 bits (54), Expect = 2.1
Identities = 3/20 (15%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + L +A + ++++
Sbjct: 137 SEGDTPLDIAEEEAMEELLQ 156
Score = 24.4 bits (54), Expect = 2.7
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E K + + DV N K G + LH AA G + +
Sbjct: 212 TEVLKLLIQARY--DV-NIKDYDGWTPLHAAAHWGKEEACR 249
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 36.5 bits (84), Expect = 1e-04
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
L+ L+S + V A +AA G++ V+
Sbjct: 108 LDTLCLLLTSDEIVKVIQ-AENYQAFRLAAENGHLHVLN 145
Score = 29.1 bits (65), Expect = 0.045
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT-GASALHVAAAKGYIKVMK 60
L + + A +AA G++ V+
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 180
Score = 27.2 bits (60), Expect = 0.23
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 39 NPKTGASALHVAAAKGYIKVMK 60
P L +A G
Sbjct: 315 IPGDANELLRLALRLGNQGACA 336
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 32.8 bits (75), Expect = 0.003
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
L+ + L ++ N G + L +AA +G I++ +
Sbjct: 201 LQMGARLCPTVQLEEISN-HQGLTPLKLAAKEGKIEIFR 238
Score = 29.8 bits (67), Expect = 0.029
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 10/49 (20%)
Query: 22 LEDAKFWLSSGCLGDVPNP----------KTGASALHVAAAKGYIKVMK 60
L P P G SALH+A K ++ +K
Sbjct: 59 NACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVK 107
Score = 26.3 bits (58), Expect = 0.45
Identities = 5/37 (13%), Positives = 8/37 (21%)
Query: 24 DAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ G L +AA V+
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT 153
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase,
pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens}
PDB: 3ixe_A 2kbx_A
Length = 179
Score = 32.4 bits (75), Expect = 0.003
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ WL + + N G S LH A +G V++
Sbjct: 18 AVAVRLWLDNT--ENDLNQGDDHGFSPLHWACREGRSAVVE 56
Score = 25.9 bits (58), Expect = 0.78
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ + LH+AA+ G+ +++
Sbjct: 70 RGDDTPLHLAASHGHRDIVQ 89
Score = 25.5 bits (57), Expect = 0.90
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G LH A G +V +
Sbjct: 103 EHGNVPLHYACFWGQDQVAE 122
Score = 25.1 bits (56), Expect = 1.1
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G + A A + +
Sbjct: 136 KYGEMPVDKAKAPLRELLRE 155
Score = 23.9 bits (53), Expect = 3.3
Identities = 1/18 (5%), Positives = 5/18 (27%)
Query: 43 GASALHVAAAKGYIKVMK 60
+ +G ++
Sbjct: 5 FMDDIFTQCREGNAVAVR 22
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.003
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 4 FVQGINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVM 59
+ E+ T + L K ++++ + P K SAL A +G +++
Sbjct: 104 LAAKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 32.1 bits (74), Expect = 0.004
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ L++G N LH AA K++K
Sbjct: 44 VRLVCTLLNAGA--LK-NLLENEFPLHQAATLEDTKIVK 79
Score = 29.4 bits (67), Expect = 0.041
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ ++LS + S +H+ G++ +M
Sbjct: 142 VSIVSYFLSEIP--STFDLAILLSCIHITIKNGHVDMMI 178
Score = 28.6 bits (65), Expect = 0.063
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ K L SG D + G +AL+ A G ++ +K
Sbjct: 75 TKIVKILLFSGL--DD-SQFDDKGNTALYYAVDSGNMQTVK 112
Score = 27.1 bits (61), Expect = 0.25
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G SA + A A ++++
Sbjct: 29 VHGHSASYYAIADNNVRLVC 48
Score = 26.0 bits (58), Expect = 0.60
Identities = 2/15 (13%), Positives = 8/15 (53%)
Query: 46 ALHVAAAKGYIKVMK 60
+ +A I++++
Sbjct: 198 DIKLAIDNKDIEMLQ 212
Score = 24.8 bits (55), Expect = 1.9
Identities = 1/15 (6%), Positives = 6/15 (40%)
Query: 46 ALHVAAAKGYIKVMK 60
+ + A + ++
Sbjct: 132 SFYHAVMLNDVSIVS 146
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 31.3 bits (72), Expect = 0.007
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
E + L G D + K+G S L A + +++
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Score = 27.8 bits (63), Expect = 0.14
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
L + L G +V N + G+SALH A+ +G + +++
Sbjct: 163 LSMVQLLLQHGA--NV-NAQMYSGSSALHSASGRGLLPLVR 200
Score = 27.8 bits (63), Expect = 0.16
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G +A H+A ++
Sbjct: 77 RHGQTAAHLACEHRSPTCLR 96
Score = 27.4 bits (62), Expect = 0.22
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
L + + SG + N + L VA ++ I +++
Sbjct: 196 LPLVRTLVRSGADSSLKN-CHNDTPLMVARSRRVIDILR 233
Score = 27.0 bits (61), Expect = 0.25
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 22 LEDAKFWLSSG--CLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ L S D+ + G +ALHVA + ++
Sbjct: 92 PTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQ 133
Score = 25.1 bits (56), Expect = 1.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G + LH+A +G + +
Sbjct: 7 EDGDTPLHIAVVQGNLPAVH 26
Score = 24.3 bits (54), Expect = 2.3
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ LH+A V++
Sbjct: 44 NLRQTPLHLAVITTLPSVVR 63
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 30.5 bits (70), Expect = 0.017
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
L+ K L G P G + LH+AA + ++V +
Sbjct: 192 LDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVAR 229
Score = 30.2 bits (69), Expect = 0.023
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ L +G + + G + L +A GYI V
Sbjct: 357 TDIVTLLLKNGASPNEVS-SDGTTPLAIAKRLGYISVTD 394
Score = 29.4 bits (67), Expect = 0.036
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ A + G V + T G + LHVA+ G IK++K
Sbjct: 291 VPVADVLIKHGV--MV-DATTRMGYTPLHVASHYGNIKLVK 328
Score = 29.4 bits (67), Expect = 0.044
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
L K L G +V N + LH+AA G+ +V K
Sbjct: 27 LPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAK 64
Score = 29.0 bits (66), Expect = 0.056
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+E L T G + LHVAA G ++V +
Sbjct: 126 VETVLALLEKEA--SQ-ACMTKKGFTPLHVAAKYGKVRVAE 163
Score = 28.2 bits (64), Expect = 0.11
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
++ KF L DV N KT G S LH AA +G+ ++
Sbjct: 324 IKLVKFLLQHQA--DV-NAKTKLGYSPLHQAAQQGHTDIVT 361
Score = 27.8 bits (63), Expect = 0.12
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + LH+AA +G+ +++
Sbjct: 243 VQGVTPLHLAAQEGHAEMVA 262
Score = 27.8 bits (63), Expect = 0.13
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ A+ L + K G + LHVA + ++K
Sbjct: 159 VRVAELLLERDAHPNAAG-KNGLTPLHVAVHHNNLDIVK 196
Score = 27.8 bits (63), Expect = 0.14
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
++G + LHVA+ G++ ++K
Sbjct: 12 ESGLTPLHVASFMGHLPIVK 31
Score = 27.8 bits (63), Expect = 0.15
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + LH+AA +G+++ +
Sbjct: 111 TAGHTPLHIAAREGHVETVL 130
Score = 27.5 bits (62), Expect = 0.21
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K+G + LH+ A +G++ V
Sbjct: 276 KSGLTPLHLVAQEGHVPVAD 295
Score = 27.1 bits (61), Expect = 0.25
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K + LH AA G+ ++K
Sbjct: 78 KDDQTPLHCAARIGHTNMVK 97
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 30.1 bits (69), Expect = 0.020
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E + + +G DV + LH AA I ++K
Sbjct: 22 YERCRELVEAGY--DV-RQPDKENVTLLHWAAINNRIDLVK 59
Score = 27.8 bits (63), Expect = 0.12
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G S +H+AA G+ ++
Sbjct: 107 GEGCSCIHLAAQFGHTSIVA 126
Score = 27.4 bits (62), Expect = 0.17
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
++ K+++S G + D ++ LH A +G++ ++
Sbjct: 55 IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93
Score = 27.0 bits (61), Expect = 0.23
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT---GASALHVAAAKGYIKVMK 60
++ + L+ V N +ALH A G V+
Sbjct: 156 VDPTRLLLTFNV--SV-NLGDKYHKNTALHWAVLAGNTTVIS 194
Score = 25.9 bits (58), Expect = 0.75
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
L +G D N G SAL +A + + ++
Sbjct: 190 TTVISLLLEAGANVDAQN-IKGESALDLAKQRKNVWMIN 227
Score = 25.5 bits (57), Expect = 1.1
Identities = 2/20 (10%), Positives = 5/20 (25%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ A G + +
Sbjct: 7 DYSTWDIVKATQYGIYERCR 26
Score = 23.9 bits (53), Expect = 3.2
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 41 KTGASALHVAAAKGYIK 57
+ G + L AA + +
Sbjct: 140 QNGMTPLMWAAYRTHSV 156
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 30.2 bits (69), Expect = 0.023
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 38 PNPKT-GASALHVAAAKGYIKVMK 60
P++ AS +H AA +G+++ +
Sbjct: 151 VQPESDLASPIHEAARRGHVECVN 174
Score = 29.4 bits (67), Expect = 0.033
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
K L SG DV K S LH ++
Sbjct: 203 RACVKKLLESGA--DVNQGKGQDSPLHAVVRTASEELAC 239
Score = 28.2 bits (64), Expect = 0.089
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ +S G V N T S LH A G++ +K
Sbjct: 72 QLSLRNLISQGW--AV-NIITADHVSPLHEACLGGHLSCVK 109
Score = 27.8 bits (63), Expect = 0.16
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 35 GDVPNPKTGASALHVAAAKGYIKVMK 60
+ + + S +H AA G+ ++
Sbjct: 51 PLMGDAVSDWSPMHEAAIHGHQLSLR 76
Score = 27.5 bits (62), Expect = 0.16
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
L K L G V N T + L A G +
Sbjct: 105 LSCVKILLKHGA--QV-NGVTADWHTPLFNACVSGSWDCVN 142
Score = 25.9 bits (58), Expect = 0.59
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ L++A +K
Sbjct: 188 SHLGTPLYLACENQQRACVK 207
Score = 24.0 bits (53), Expect = 3.3
Identities = 1/19 (5%), Positives = 6/19 (31%)
Query: 41 KTGASALHVAAAKGYIKVM 59
G + + + + +
Sbjct: 253 AEGKRPVELVPPESPLAQL 271
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB:
2qc9_A 1ymp_A
Length = 223
Score = 29.7 bits (68), Expect = 0.025
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 25 AKFWLSSGCLGDVPNPK--TGASALHVAAAKGYIKVMK 60
++ G + N TG +ALH+AA K
Sbjct: 7 ISDFIYQGA--SLHNQTDRTGETALHLAARYSRSDAAK 42
Score = 27.8 bits (63), Expect = 0.14
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + LH A + V +
Sbjct: 56 NMGRTPLHAAVSADAQGVFQ 75
Score = 25.8 bits (58), Expect = 0.64
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G SALH AAA +
Sbjct: 123 DLGKSALHWAAAVNNVDAAV 142
Score = 25.1 bits (56), Expect = 1.2
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E AK L + + +A + + +++
Sbjct: 171 YETAKVLLDHFA--NR-DITDHMDRLPRDIAQERMHHDIVR 208
Score = 25.1 bits (56), Expect = 1.5
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + L +AA +++
Sbjct: 90 HDGTTPLILAARLAVEGMLE 109
Score = 24.7 bits (55), Expect = 1.9
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ L +AA +G + K
Sbjct: 156 NREETPLFLAAREGSYETAK 175
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 29.7 bits (68), Expect = 0.030
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 22 LEDAKFWLSSGCLGDVPNPK--TGASALHVAAAKGYIKVMK 60
L+ K L G ++ N G + L A+A G I+ ++
Sbjct: 15 LDQLKEHLRKGD--NLVNKPDERGFTPLIWASAFGEIETVR 53
Score = 28.2 bits (64), Expect = 0.11
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K SAL +A+ GY ++
Sbjct: 67 KERESALSLASTGGYTDIVG 86
Score = 27.0 bits (61), Expect = 0.26
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+G + + +A A GY KV +
Sbjct: 133 DSGYTPMDLAVALGYRKVQQ 152
Score = 26.2 bits (59), Expect = 0.46
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + L A ++K ++
Sbjct: 100 WNGGTPLLYAVRGNHVKCVE 119
Score = 26.2 bits (59), Expect = 0.51
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 43 GASALHVAAAKGYIKVMK 60
+ ++H AA+G + +K
Sbjct: 2 DSLSIHQLAAQGELDQLK 19
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 29.8 bits (68), Expect = 0.032
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 22 LEDAKFWLSSGCLGDVPN-PKTGASALHVAAAKGYIK 57
L K L+ P++ +ALH A A + K
Sbjct: 191 LAKVKKTLALE--IINFKQPQSHETALHCAVASLHPK 225
Score = 28.6 bits (65), Expect = 0.073
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K + LHVAA + + VM+
Sbjct: 245 KDFMTPLHVAAERAHNDVME 264
Score = 28.2 bits (64), Expect = 0.095
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G SA+ +A + +
Sbjct: 155 CHGKSAVDMAPTPELRERLT 174
Score = 27.5 bits (62), Expect = 0.16
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ LH AA+K ++V
Sbjct: 122 LWQFTPLHEAASKNRVEVCS 141
Score = 27.5 bits (62), Expect = 0.21
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G +ALH AA G+++ +
Sbjct: 278 SLGQTALHRAALAGHLQTCR 297
Score = 27.1 bits (61), Expect = 0.25
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
++ LH+AA +++++
Sbjct: 56 GRKSTPLHLAAGYNRVRIVQ 75
Score = 26.7 bits (60), Expect = 0.35
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G LH A + G+ +V +
Sbjct: 89 KGGLVPLHNACSYGHYEVTE 108
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 29.7 bits (68), Expect = 0.033
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 38 PNPKT-GASALHVAAAKGYIKVMK 60
P++ AS +H AA +G+++ +
Sbjct: 95 VQPESDLASPIHEAARRGHVECVN 118
Score = 28.6 bits (65), Expect = 0.084
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
K L SG DV K S LH A ++
Sbjct: 147 RACVKKLLESGA--DVNQGKGQDSPLHAVARTASEELAC 183
Score = 28.2 bits (64), Expect = 0.094
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ +S G V N T S LH A G++ +K
Sbjct: 16 QLSLRNLISQGW--AV-NIITADHVSPLHEACLGGHLSCVK 53
Score = 26.6 bits (60), Expect = 0.32
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ L++A +K
Sbjct: 132 SHLGTPLYLACENQQRACVK 151
Score = 26.6 bits (60), Expect = 0.41
Identities = 3/20 (15%), Positives = 5/20 (25%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ L A G +
Sbjct: 67 ADWHTPLFNACVSGSWDCVN 86
Score = 25.9 bits (58), Expect = 0.67
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 42 TGASALHVAAAKGYIKVMK 60
+ S +H AA G+ ++
Sbjct: 2 SDWSPMHEAAIHGHQLSLR 20
Score = 25.5 bits (57), Expect = 0.87
Identities = 2/20 (10%), Positives = 5/20 (25%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ + K+ K
Sbjct: 228 LCRLRIRKCFGIQQHHKITK 247
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 29.6 bits (66), Expect = 0.037
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 18 ERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ + E + ++ ++P + G + LH + ++++K
Sbjct: 106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK 148
Score = 25.8 bits (56), Expect = 0.81
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + L++AA G I ++
Sbjct: 281 SNGDTCLNIAARLGNISIVD 300
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 29.0 bits (66), Expect = 0.047
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E ++F + +G V K LH AA+ G +K+++
Sbjct: 120 FEVSQFLIENGA--SV-RIKDKFNQIPLHRAASVGSLKLIE 157
Score = 28.6 bits (65), Expect = 0.074
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
LE K D+ N T G + LH+A K + +V +
Sbjct: 85 LEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQ 124
Score = 27.4 bits (62), Expect = 0.21
Identities = 5/38 (13%), Positives = 11/38 (28%), Gaps = 5/38 (13%)
Query: 25 AKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ S + K G LH + + ++
Sbjct: 19 QELLHSKPS--LL-LQKDQDGRIPLHWSVSFQAHEITS 53
Score = 26.6 bits (60), Expect = 0.39
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+G + H+A + G ++V+K
Sbjct: 70 DSGWTPFHIACSVGNLEVVK 89
Score = 25.5 bits (57), Expect = 0.93
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G + L A A+G+
Sbjct: 172 KQGWTPLFHALAEGHGDAAV 191
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 29.0 bits (66), Expect = 0.051
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K GA+ +AA G +K++K
Sbjct: 70 KNGATPFLLAAIAGSVKLLK 89
Score = 28.2 bits (64), Expect = 0.10
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K GA+AL AA KG+++V+K
Sbjct: 146 KGGATALMDAAEKGHVEVLK 165
Score = 27.4 bits (62), Expect = 0.22
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT---GASALHVAAAKGYIKVMK 60
++ + L G +V N + G + LH A +++
Sbjct: 18 VDLVQQLLEGGA--NV-NFQEEEGGWTPLHNAVQMSREDIVE 56
Score = 26.7 bits (60), Expect = 0.34
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
++ K +LS G DV N G +A AA G +K +K
Sbjct: 85 VKLLKLFLSKGA--DV-NECDFYGFTAFMEAAVYGKVKALK 122
Score = 25.9 bits (58), Expect = 0.79
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G + L +A K ++ +++
Sbjct: 217 ERGKTPLILAVEKKHLGLVQ 236
Score = 25.5 bits (57), Expect = 0.89
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G +AL +A K+ +
Sbjct: 251 SDGKTALLLAVELKLKKIAE 270
Score = 24.4 bits (54), Expect = 2.3
Identities = 2/18 (11%), Positives = 6/18 (33%)
Query: 43 GASALHVAAAKGYIKVMK 60
L A + +++
Sbjct: 5 DNHLLIKAVQNEDVDLVQ 22
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 29.0 bits (65), Expect = 0.053
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 43 GASALHVAAAKGYIKVMK 60
G +ALH+A + + ++
Sbjct: 101 GQTALHIAIERRNMTLVT 118
Score = 28.6 bits (64), Expect = 0.071
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
L + L ++ N + G + L +AA+ G I V+
Sbjct: 213 LILGAKLHPTLKLEEITN-RKGLTPLALAASSGKIGVLA 250
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 29.1 bits (66), Expect = 0.054
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K+ SALH AAA +M
Sbjct: 197 KSERSALHQAAANRDFGMMV 216
Score = 28.0 bits (63), Expect = 0.14
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 18 ERSMLEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E ++ +AK +++G DV N + L +A +++
Sbjct: 142 EDLIVHEAKECIAAGA--DV-NAMDCDENTPLMLAVLARRRRLVA 183
Score = 27.6 bits (62), Expect = 0.19
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G + + +AA +G I+V+
Sbjct: 311 EDGKTPIMLAAQEGRIEVVM 330
Score = 27.2 bits (61), Expect = 0.23
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G +ALH AA + ++K
Sbjct: 277 YKGRTALHYAAQVSNMPIVK 296
Score = 26.8 bits (60), Expect = 0.31
Identities = 4/37 (10%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKV 58
+ ++ +P+ + LH A+ +
Sbjct: 106 YAITEPITRESV--NIIDPRHNRTVLHWIASNSSAEK 140
Score = 26.1 bits (58), Expect = 0.57
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
T +A +A A + ++
Sbjct: 344 ATDHTARQLAQANNHHNIVD 363
Score = 23.8 bits (52), Expect = 4.0
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGY 55
+ L+S L G +AL + A
Sbjct: 212 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG 247
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 29.1 bits (66), Expect = 0.059
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
TGA K V +
Sbjct: 321 NTGAGGAVKRKKKAAPAVKR 340
Score = 28.3 bits (64), Expect = 0.097
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 35 GDVPNPKTGASALHVAAAKGYIKVMK 60
G+V + G +H+A ++
Sbjct: 76 GEVHSLWHGQKPIHLAVMANKTDLVV 101
Score = 28.3 bits (64), Expect = 0.11
Identities = 3/20 (15%), Positives = 6/20 (30%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K + L A + +
Sbjct: 171 KADETPLMRAMEFRNREALD 190
Score = 28.3 bits (64), Expect = 0.11
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
++ + + +G + G +ALH+A G + K
Sbjct: 33 TDEVRRLIETGV--SP-TIQNRFGCTALHLACKFGCVDTAK 70
Score = 27.9 bits (63), Expect = 0.12
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ A ++ G DV N + L+++ + + K
Sbjct: 224 EDVAMRFVEMGI--DV-NMEDNEHTVPLYLSVRAAMVLLTK 261
Score = 27.5 bits (62), Expect = 0.20
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+HVAA KG ++
Sbjct: 18 DENMEKIHVAARKGQTDEVR 37
Score = 27.1 bits (61), Expect = 0.25
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G S LH A + V
Sbjct: 209 KQGNSHLHWAILINWEDVAM 228
Score = 25.6 bits (57), Expect = 1.0
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 35 GDVPNPKT--GASALHVAAAKGYIKVMK 60
G P + AA +V++
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQ 307
Score = 25.2 bits (56), Expect = 1.4
Identities = 2/20 (10%), Positives = 6/20 (30%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G + +V +
Sbjct: 109 ERGQMPESLLNECDEREVNE 128
Score = 24.1 bits (53), Expect = 3.0
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 41 KTGASALHVAAAKG--YIKVMK 60
G +ALH G Y++++K
Sbjct: 136 CKGQTALHWCVGLGPEYLEMIK 157
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 28.6 bits (65), Expect = 0.071
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 7 GINPEDARTFEERSMLEDAKFWLSSGCLGDVPNPK--TGASALHVAAAKGYIKVMK 60
G E + EE ++ G + N TG +ALH+AA K
Sbjct: 21 GGGLETGNSEEEEDAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAK 74
Score = 27.8 bits (63), Expect = 0.15
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + LH A + V +
Sbjct: 88 NMGRTPLHAAVSADAQGVFQ 107
Score = 25.9 bits (58), Expect = 0.71
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G SALH AAA +
Sbjct: 155 DLGKSALHWAAAVNNVDAAV 174
Score = 25.1 bits (56), Expect = 1.3
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
++ A L +G + + + + L +AA +G + K
Sbjct: 170 VDAAVVLLKNGA--NK-DMQNNREETPLFLAAREGSYETAK 207
Score = 25.1 bits (56), Expect = 1.3
Identities = 4/41 (9%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ + + + + G + L +AA +++
Sbjct: 103 QGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGMLE 141
Score = 24.7 bits (55), Expect = 1.8
Identities = 1/20 (5%), Positives = 7/20 (35%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+A + + +++
Sbjct: 221 HMDRLPRDIAQERMHHDIVR 240
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 28.5 bits (65), Expect = 0.073
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
LE K+ + +G V +PK G++ LH+AA KG+ +V++
Sbjct: 57 LEAVKYLIKAGA--LV-DPKDAEGSTCLHLAAKKGHYEVVQ 94
Score = 28.1 bits (64), Expect = 0.091
Identities = 5/41 (12%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
++ + +G ++ + + + L AA +++ +K
Sbjct: 24 VDICHMLVQAGA--NI-DTCSEDQRTPLMEAAENNHLEAVK 61
Score = 28.1 bits (64), Expect = 0.11
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
++ A+ L++ C D+ + G S LH+AA + +
Sbjct: 157 VDIAEILLAAKC--DL-HAVNIHGDSPLHIAARENRYDCVV 194
Score = 28.1 bits (64), Expect = 0.12
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E ++ LS+G DV N + G + + A ++ ++K
Sbjct: 90 YEVVQYLLSNG-QMDV-NCQDDGGWTPMIWATEYKHVDLVK 128
Score = 26.6 bits (60), Expect = 0.34
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
LH AA G + + +
Sbjct: 142 NEENICLHWAAFSGCVDIAE 161
Score = 25.8 bits (58), Expect = 0.74
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ S LH AA G++ +
Sbjct: 9 QNKRSPLHAAAEAGHVDICH 28
Score = 25.5 bits (57), Expect = 0.99
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G + L A+ +
Sbjct: 208 KEGETPLQCASLNSQVWSAL 227
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 28.7 bits (65), Expect = 0.076
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ + + +PN G +ALH A G+ +++K
Sbjct: 50 FDLVQRIIYEVDDPSLPN-DEGITALHNAVCAGHTEIVK 87
Score = 28.0 bits (63), Expect = 0.13
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E KF + G +V N G + LH AA+ ++V K
Sbjct: 83 TEIVKFLVQFGV--NV-NAADSDGWTPLHCAASCNNVQVCK 120
Score = 26.4 bits (59), Expect = 0.45
Identities = 4/39 (10%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ ++ G V + L ++ +G +++
Sbjct: 18 RKTGSERIAHGM--RVKFNPLPLALLLDSSLEGEFDLVQ 54
Score = 25.7 bits (57), Expect = 0.93
Identities = 4/20 (20%), Positives = 5/20 (25%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
TG +L K
Sbjct: 3 ITGQVSLPPGKRTNLRKTGS 22
Score = 25.3 bits (56), Expect = 1.1
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 22 LEDAKFWLSSGCLGDV----PNPKTGASALHVAAAKGYIKVMK 60
++ KF + SG V + A+ +GY + +
Sbjct: 116 VQVCKFLVESGA--AVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 28.4 bits (64), Expect = 0.077
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G +ALH AA KGY +++
Sbjct: 138 KLGDTALHAAAWKGYADIVQ 157
Score = 28.0 bits (63), Expect = 0.14
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
L + L + + + K G++AL+ A G+ +++
Sbjct: 86 LSWLRECLDNRVGVNGLD-KAGSTALYWACHGGHKDIVE 123
Score = 27.6 bits (62), Expect = 0.18
Identities = 5/41 (12%), Positives = 10/41 (24%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
GD+ T + +KG ++
Sbjct: 25 PRTPDELYIEE--GDI-IYITDMSDTNWWKGTSKGRTGLIP 62
Score = 27.2 bits (61), Expect = 0.25
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
++ + LH AA +G + ++
Sbjct: 71 ESIDNPLHEAAKRGNLSWLR 90
Score = 25.7 bits (57), Expect = 0.89
Identities = 3/20 (15%), Positives = 6/20 (30%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
A +A ++K
Sbjct: 171 IEKKLAFDMATNAACASLLK 190
Score = 23.7 bits (52), Expect = 4.7
Identities = 3/20 (15%), Positives = 5/20 (25%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G + A +
Sbjct: 10 KPGQVKVFRALYTFEPRTPD 29
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 28.7 bits (65), Expect = 0.081
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
E + +G + P P G + LH+A V++
Sbjct: 171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Score = 27.5 bits (62), Expect = 0.20
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G +ALH+A
Sbjct: 76 RGGHTALHLACRVRAHTCAC 95
Score = 27.1 bits (61), Expect = 0.27
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 25 AKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
F L + + + G +ALH+AA G ++
Sbjct: 25 LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Score = 26.4 bits (59), Expect = 0.41
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G +ALH+A + +
Sbjct: 7 EDGDTALHLAVIHQHEPFLD 26
Score = 26.4 bits (59), Expect = 0.49
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 23 EDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E+ + + G + LHVA ++++
Sbjct: 139 EEEPRDEDWRL--QL-EAENYDGHTPLHVAVIHKDAEMVR 175
Score = 26.0 bits (58), Expect = 0.66
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + L A + + +
Sbjct: 223 YGGRTPLGSALLRPNPILAR 242
Score = 23.7 bits (52), Expect = 4.6
Identities = 1/18 (5%), Positives = 3/18 (16%)
Query: 41 KTGASALHVAAAKGYIKV 58
S + +
Sbjct: 256 GDKLSPCSSSGSDSDSDN 273
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV;
NMR {Escherichia coli}
Length = 115
Score = 28.1 bits (64), Expect = 0.088
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E+ K LS G DV N ++ G + LH+AA G+ +++K
Sbjct: 22 AEEVKKLLSKGA--DV-NARSKDGNTPLHLAAKNGHAEIVK 59
Score = 25.4 bits (57), Expect = 0.90
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E K L+ G DV N ++ G + H+A G+ +++K
Sbjct: 55 AEIVKLLLAKGA--DV-NARSKDGNTPEHLAKKNGHHEIVK 92
Score = 24.6 bits (55), Expect = 1.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G + LH AA G+ + +K
Sbjct: 7 KDGNTPLHNAAKNGHAEEVK 26
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 27.9 bits (63), Expect = 0.12
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
L + +S G + P G +ALH+A ++
Sbjct: 130 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 168
Score = 27.1 bits (61), Expect = 0.22
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ L G DV N T G S + + ++ +
Sbjct: 164 PDLVSLLLKCGA--DV-NRVTYQGYSPYQLTWGRPSTRIQQ 201
Score = 27.1 bits (61), Expect = 0.24
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + LH+A+ GY+ +++
Sbjct: 115 YNGHTCLHLASIHGYLGIVE 134
Score = 26.0 bits (58), Expect = 0.55
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+E + + N + LH+A ++ +
Sbjct: 25 MEVIRQVKGDLAFLNFQN-NLQQTPLHLAVITNQPEIAE 62
Score = 26.0 bits (58), Expect = 0.56
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E A+ L +GC D + G + LH+A +G + +
Sbjct: 58 PEIAEALLGAGC--DP-ELRDFRGNTPLHLACEQGCLASVG 95
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 27.9 bits (62), Expect = 0.12
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ +ALH A + G+ ++++
Sbjct: 38 QDSRTALHWACSAGHTEIVE 57
Score = 26.8 bits (59), Expect = 0.40
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
E +F L G V N K G S LH+AA+ G +++K
Sbjct: 53 TEIVEFLLQLGV--PV-NDKDDAGWSPLHIAASAGXDEIVK 90
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A
{Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D*
4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P
2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 27.7 bits (63), Expect = 0.14
Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
++ + +++G DV N + G + LH+AA G++++++
Sbjct: 27 DDEVRILMANGA--DV-NAEDASGWTPLHLAAFNGHLEIVE 64
Score = 26.9 bits (61), Expect = 0.23
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + LH+AA G++++++
Sbjct: 111 MEGHTPLHLAAMFGHLEIVE 130
Score = 25.4 bits (57), Expect = 0.85
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G +A ++ G + +
Sbjct: 144 KFGKTAFDISIDNGNEDLAE 163
Score = 24.6 bits (55), Expect = 1.6
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + L +AA G++++++
Sbjct: 78 HAGMTPLRLAALFGHLEIVE 97
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent
kinase, cyclin dependent kinase inhibitory protein,
CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1
PDB: 1a5e_A 1dc2_A 2a5e_A
Length = 156
Score = 27.4 bits (62), Expect = 0.16
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 39 NPKTGASALHVAAAKGYIKVMK 60
+ + A L AAA+G ++ ++
Sbjct: 8 SMEPSADWLATAAARGRVEEVR 29
Score = 27.1 bits (61), Expect = 0.26
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
A+ L G + +P T +H AA +G++ +
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
Score = 25.1 bits (56), Expect = 1.1
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+E+ + L +G + PN G + V G +V +
Sbjct: 25 VEEVRALLEAGANPNAPN-SYGRRPIQV-MMMGSARVAE 61
Score = 24.7 bits (55), Expect = 1.5
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + +A G+ V +
Sbjct: 109 AWGRLPVDLAEELGHRDVAR 128
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 26.9 bits (61), Expect = 0.17
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
LE K L +G DV N K G + LH+AA G+++V+K
Sbjct: 15 LEVVKLLLEAGA--DV-NAKDKNGRTPLHLAARNGHLEVVK 52
Score = 25.0 bits (56), Expect = 0.84
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G + LH+AA G+++V+K
Sbjct: 66 KNGRTPLHLAARNGHLEVVK 85
Score = 24.6 bits (55), Expect = 1.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 43 GASALHVAAAKGYIKVMK 60
G + LH+AA G+++V+K
Sbjct: 2 GRTPLHLAARNGHLEVVK 19
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 27.4 bits (62), Expect = 0.18
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
TGA +H+A +G+ V+
Sbjct: 99 GTGALPIHLAVQEGHTAVVS 118
Score = 26.6 bits (60), Expect = 0.32
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 43 GASALHVAAAKGYIKVMK 60
L AAA+G ++ ++
Sbjct: 2 AGDRLSGAAARGDVQEVR 19
Score = 26.2 bits (59), Expect = 0.42
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+G S +H AA G++ +K
Sbjct: 66 TSGTSPVHDAARTGFLDTLK 85
Score = 25.8 bits (58), Expect = 0.63
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + L +A +G ++
Sbjct: 131 ARGLTPLELALQRGAQDLVD 150
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END
capping, inhibition, prote binding, actin capping,
actin-binding, cytoskeleton, ANK RE; 2.20A {Homo
sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Length = 123
Score = 27.4 bits (62), Expect = 0.19
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
L++ K +++ G DV N G LH AA G +++++
Sbjct: 20 LDEVKDYVAKGE--DV-NRTLEGGRKPLHYAADCGQLEILE 57
Score = 25.1 bits (56), Expect = 1.0
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K + L A +G++ +K
Sbjct: 71 KHHITPLLSAVYEGHVSCVK 90
Score = 24.3 bits (54), Expect = 2.4
Identities = 2/20 (10%), Positives = 7/20 (35%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G +A + +++
Sbjct: 104 PDGLTAFEATDNQAIKALLQ 123
Score = 23.9 bits (53), Expect = 3.6
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 43 GASALHVAAAKGYIKVMK 60
A G + +K
Sbjct: 7 CDKEFMWALKNGDLDEVK 24
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 27.2 bits (61), Expect = 0.20
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G +ALH A ++
Sbjct: 52 EEGITALHNAICGANYSIVD 71
Score = 25.7 bits (57), Expect = 0.80
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPK--TGASALHVAAAKGYIKVMK 60
F +++G +V N G + LH AA+ +
Sbjct: 67 YSIVDFLITAGA--NV-NSPDSHGWTPLHCAASCNDTVICM 104
Score = 24.9 bits (55), Expect = 1.5
Identities = 6/41 (14%), Positives = 9/41 (21%), Gaps = 2/41 (4%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAA--KGYIKVMK 60
+ G GA+A +GY
Sbjct: 100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140
Score = 24.1 bits (53), Expect = 3.0
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 42 TGASALHVAAAKGYIKVMK 60
L AA G ++V++
Sbjct: 20 NPLVLLLDAALTGELEVVQ 38
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 26.9 bits (61), Expect = 0.22
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
LE K L +G DV N K G + LH+AA G+++V+K
Sbjct: 15 LEVVKLLLEAGA--DV-NAKDKNGRTPLHLAARNGHLEVVK 52
Score = 26.2 bits (59), Expect = 0.45
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G + LH+AA G+++V+K
Sbjct: 66 KNGRTPLHLAARNGHLEVVK 85
Score = 26.2 bits (59), Expect = 0.50
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G + LH+AA G+++V+K
Sbjct: 99 KNGRTPLHLAARNGHLEVVK 118
Score = 25.0 bits (56), Expect = 1.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 43 GASALHVAAAKGYIKVMK 60
G + LH+AA G+++V+K
Sbjct: 2 GRTPLHLAARNGHLEVVK 19
>3v31_A Ankyrin repeat family A protein 2; structural genomics
consortium, SGC, ankra2, ANK repeat, Pro binding,
HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 27.0 bits (61), Expect = 0.23
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ + + N G + L AAA G I V++
Sbjct: 16 MLYLATRIEQEN--VI-NHTDEEGFTPLMWAAAHGQIAVVE 53
Score = 27.0 bits (61), Expect = 0.28
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K SAL +A +KGY ++K
Sbjct: 67 KGRESALSLACSKGYTDIVK 86
Score = 27.0 bits (61), Expect = 0.29
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 43 GASALHVAAAKGYIKVMK 60
+ ++H AA+G + +
Sbjct: 3 NSLSVHQLAAQGEMLYLA 20
Score = 27.0 bits (61), Expect = 0.30
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + L A ++K +K
Sbjct: 100 WNGGTPLLYAVHGNHVKCVK 119
Score = 26.6 bits (60), Expect = 0.33
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+G +++ +A A GY V +
Sbjct: 133 DSGYNSMDLAVALGYRSVQQ 152
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 27.0 bits (61), Expect = 0.28
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + LH+A+ KG I ++
Sbjct: 8 HRGETLLHIASIKGDIPSVE 27
Score = 26.6 bits (60), Expect = 0.32
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
L+ + L L + S LH AA G++ ++K
Sbjct: 56 LKVVELLLQHKALVNTTG-YQNDSPLHDAAKNGHVDIVK 93
Score = 25.5 bits (57), Expect = 0.82
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
++ K LS G N G + + ++
Sbjct: 89 VDIVKLLLSYG--ASR-NAVNIFGLRPVDYTDDESMKSLLL 126
Score = 25.5 bits (57), Expect = 0.99
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ ++ L +G D N K G + LH A G++KV++
Sbjct: 23 IPSVEYLLQNGS--DP-NVKDHAGWTPLHEACNHGHLKVVE 60
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 26.6 bits (60), Expect = 0.29
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ + L AAA+G ++ ++
Sbjct: 10 GSSDAGLATAAARGQVETVR 29
Score = 26.6 bits (60), Expect = 0.32
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + +A +G+ + +
Sbjct: 109 AWGRLPVDLAEEQGHRDIAR 128
Score = 26.2 bits (59), Expect = 0.41
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ A+ L G + +P T +H AA +G++ +
Sbjct: 57 AQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
>2rfa_A Transient receptor potential cation channel subfa member 6;
TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 26.8 bits (60), Expect = 0.29
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 25 AKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+K GC +V + + G +ALH+AA ++
Sbjct: 20 SKLLKFEGC--EV-HQRGAMGETALHIAALYDNLEAAM 54
Score = 26.0 bits (58), Expect = 0.67
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 22 LEDAKFWLSSG--CLGDVPNPKT--GASALHVAAAKGYIKVMK 60
LE A + + + + + G +ALH+A + +++
Sbjct: 50 LEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Score = 25.6 bits (57), Expect = 0.87
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + +A +G I + +
Sbjct: 195 NQGLTPFKLAGVEGNIVMFQ 214
Score = 24.9 bits (55), Expect = 1.4
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 43 GASALHVAAAKGYIKVMK 60
S L +AA + ++ +
Sbjct: 3 WESPLLLAAKENDVQALS 20
Score = 24.5 bits (54), Expect = 2.2
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G L AA G ++++
Sbjct: 119 YYGEHPLSFAACVGSEEIVR 138
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 26.8 bits (60), Expect = 0.34
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ + +G D + + G +ALH+AA +V++
Sbjct: 90 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Score = 26.0 bits (58), Expect = 0.59
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G +AL A G K ++
Sbjct: 75 ENGRTALLFVAGLGSDKCVR 94
Score = 24.9 bits (55), Expect = 1.7
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 43 GASALHVAAAKGYIKVMK 60
+ AA K + +
Sbjct: 45 YETPWWTAARKADEQALS 62
Score = 24.5 bits (54), Expect = 2.3
Identities = 5/34 (14%), Positives = 8/34 (23%), Gaps = 3/34 (8%)
Query: 23 EDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYI 56
+ + K L A A+ I
Sbjct: 213 DCEWVKGVHV--AED-VAKDYEDGLEYAVAESVI 243
Score = 24.5 bits (54), Expect = 2.6
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G +AL +A
Sbjct: 142 ERGLTALELAREILKTTPKG 161
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 26.4 bits (59), Expect = 0.34
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G++ LH+AA G+++V+K
Sbjct: 55 KNGSTPLHLAARNGHLEVVK 74
Score = 24.8 bits (55), Expect = 1.3
Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 4/39 (10%)
Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
+ + G + L AA G ++
Sbjct: 7 HHHSSGLVPRGS--HM-GSD-LGKKLLEAARAGQDDEVR 41
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 26.6 bits (60), Expect = 0.38
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
S A A+G +++
Sbjct: 70 SISDSPYLYAGAQGRTEILA 89
Score = 26.3 bits (59), Expect = 0.56
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G +AL AA KG+I +K
Sbjct: 104 RYGGNALIPAAEKGHIDNVK 123
Score = 25.9 bits (58), Expect = 0.70
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ + + V + G + L++A I++ K
Sbjct: 19 KKVKEILQDTTY--QV-DEVDTEGNTPLNIAVHNNDIEIAK 56
Score = 25.1 bits (56), Expect = 1.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+G +A+ A KGY ++ K
Sbjct: 176 NSGRTAMDYANQKGYTEISK 195
Score = 24.3 bits (54), Expect = 2.1
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 43 GASALHVAAAKGYIKVMK 60
+ L A + KV +
Sbjct: 6 VGALLEAANQRDTKKVKE 23
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 26.3 bits (59), Expect = 0.45
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 39 NPKTGASALHVAAAKGYIKVMK 60
+ + G +ALH+AA +V++
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVE 127
Score = 25.5 bits (57), Expect = 1.00
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 43 GASALHVAAAKGYIKVMK 60
+ AA K + +
Sbjct: 44 YETPWWTAARKADEQALS 61
Score = 24.8 bits (55), Expect = 1.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G +AL A G K ++
Sbjct: 74 ENGRTALLFVAGLGSDKCVR 93
Score = 24.0 bits (53), Expect = 2.8
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G +AL +A
Sbjct: 141 ERGLTALELAREILKTTPKG 160
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 26.2 bits (59), Expect = 0.50
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G S LH+AA G+ +
Sbjct: 32 WLGTSPLHLAAQYGHFSTTE 51
Score = 25.4 bits (57), Expect = 0.79
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ALH A + +V++
Sbjct: 98 MLKMTALHWATEHNHQEVVE 117
Score = 25.0 bits (56), Expect = 1.2
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K + LH+AA++G+ +++
Sbjct: 65 KVDRTPLHMAASEGHANIVE 84
Score = 24.7 bits (55), Expect = 1.6
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K +A ++ G + +
Sbjct: 131 KFCKTAFDISIDNGNEDLAE 150
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 26.3 bits (58), Expect = 0.54
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 43 GASALHVAAAKGYIKVMK 60
G +ALH+A + ++
Sbjct: 93 GQTALHIAIERRCKHYVE 110
Score = 25.9 bits (57), Expect = 0.68
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 34 LGDVPNPKTGASALHVAAAKGYIKVMK 60
L + N G S L +AA G I + +
Sbjct: 217 LEALLN-NDGLSPLMMAAKTGKIGIFQ 242
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction,
substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A
{Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A
3twx_A 3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 25.8 bits (58), Expect = 0.74
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G LH A + G+ +V +
Sbjct: 73 KGGLVPLHNACSYGHYEVAE 92
Score = 25.0 bits (56), Expect = 1.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ LH AAAKG ++ K
Sbjct: 106 LWKFTPLHEAAAKGKYEICK 125
Score = 25.0 bits (56), Expect = 1.3
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 43 GASALHVAAAKGYIKVMK 60
L AA G ++ +K
Sbjct: 8 ADRQLLEAAKAGDVETVK 25
Score = 25.0 bits (56), Expect = 1.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
++ LH AA + V++
Sbjct: 40 GRQSTPLHFAAGYNRVSVVE 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 25.8 bits (58), Expect = 0.77
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G LH+AA +G+++V++
Sbjct: 101 NEGNLPLHLAAKEGHLRVVE 120
Score = 25.8 bits (58), Expect = 0.78
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+TG + +H AA G++ ++
Sbjct: 68 RTGFAVIHDAARAGFLDTLQ 87
Score = 25.0 bits (56), Expect = 1.3
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G +A +A G +V+
Sbjct: 135 HKGDTACDLARLYGRNEVVS 154
Score = 25.0 bits (56), Expect = 1.5
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 43 GASALHVAAAKGYIKVMK 60
+ L AAA+G ++ +
Sbjct: 5 WGNELASAAARGDLEQLT 22
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 25.8 bits (57), Expect = 0.81
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G +AL +K
Sbjct: 152 KWGLTALEFVKRCQKPIALK 171
Score = 25.8 bits (57), Expect = 0.86
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ + F ++ G D+ +T G + G +
Sbjct: 55 YKISMFLINKGA--DI-KSRTKEGTTLFFPLFQGGGNDITG 92
Score = 24.2 bits (53), Expect = 2.4
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 39 NPKTGASALHVAAAKGYIKVMK 60
N + + AA G +
Sbjct: 2 NAMSEYRTVSAAAMLGTYEDFL 23
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 25.4 bits (57), Expect = 0.87
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
K G +A ++ G + +
Sbjct: 111 KFGKTAFDISIGNGNEDLAE 130
Score = 25.0 bits (56), Expect = 1.3
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
LE + L +G DV N G + LH+AA G++++ +
Sbjct: 60 LEIVEVLLKNGA--DV-NAVDAIGFTPLHLAAFIGHLEIAE 97
Score = 25.0 bits (56), Expect = 1.4
Identities = 5/20 (25%), Positives = 15/20 (75%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ G + L++A A G++++++
Sbjct: 45 EYGLTPLYLATAHGHLEIVE 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 25.0 bits (56), Expect = 1.1
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVMK 60
+ + + K G++AL A + + +
Sbjct: 48 ENAIDKLVENFD--KL-EDKDIEGSTALIWAVKNNRLGIAE 85
Score = 25.0 bits (56), Expect = 1.4
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
G + L VA+ G +++K
Sbjct: 132 LEGETPLIVASKYGRSEIVK 151
Score = 24.7 bits (55), Expect = 1.8
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+ L VA G +
Sbjct: 33 SYNRTPLMVACMLGMENAID 52
Score = 24.7 bits (55), Expect = 2.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
TG +A A G +V+K
Sbjct: 165 LTGLTAEASARIFGRQEVIK 184
Score = 24.3 bits (54), Expect = 2.6
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 41 KTGASALHVAAAKGYIKVMK 60
+G + L + GY ++
Sbjct: 99 FSGKTPLMWSIIFGYSEMSY 118
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 24.3 bits (53), Expect = 2.5
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 3/16 (18%)
Query: 34 LGD---VPNPKTGASA 46
+GD + PK G A
Sbjct: 305 VGDANSMTVPKLGYLA 320
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 23.2 bits (50), Expect = 6.3
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 34 LGDV----PNPKTGASA 46
+GD P PK+G SA
Sbjct: 292 IGDASIANPMPKSGYSA 308
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.395
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 947,157
Number of extensions: 42010
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 242
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.1 bits)