RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9955
         (60 letters)



>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
           {Legionella pneumophila [TaxId: 446]}
          Length = 346

 Score = 32.9 bits (74), Expect = 0.001
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 4/47 (8%)

Query: 18  ERSMLEDAKFWLSSGCLGDVPN----PKTGASALHVAAAKGYIKVMK 60
           +  +L+D +F LS   +  +      P      L +A   G      
Sbjct: 288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334



 Score = 28.7 bits (63), Expect = 0.024
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 20  SMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           S L+     L+S  +  V        A  +AA  G++ V+ 
Sbjct: 104 SALDTLCLLLTSDEIVKVIQ-AENYQAFRLAAENGHLHVLN 143



 Score = 24.1 bits (51), Expect = 1.2
 Identities = 4/20 (20%), Positives = 5/20 (25%)

Query: 41  KTGASALHVAAAKGYIKVMK 60
                   VAA  G    + 
Sbjct: 88  IKSEVICFVAAITGCSSALD 107


>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 285

 Score = 31.9 bits (71), Expect = 0.002
 Identities = 6/39 (15%), Positives = 15/39 (38%)

Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
          ++  +  L  G   +    + G + LH A       +++
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE 56



 Score = 27.2 bits (59), Expect = 0.100
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 41  KTGASALHVAAAKGYIKVMK 60
           K GA+AL  AA KG+++V+K
Sbjct: 146 KGGATALMDAAEKGHVEVLK 165



 Score = 26.1 bits (56), Expect = 0.23
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 41  KTGASALHVAAAKGYIKVMK 60
             G +AL +A      K+ +
Sbjct: 251 SDGKTALLLAVELKLKKIAE 270


>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 228

 Score = 31.4 bits (69), Expect = 0.003
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 18  ERSMLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
            R +L   +  + SG    + N     + L VA ++  I +++
Sbjct: 186 GRGLLPLVRTLVRSGADSSLKN-CHNDTPLMVARSRRVIDILR 227



 Score = 26.7 bits (57), Expect = 0.15
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 43 GASALHVAAAKGYIKVMK 60
          G + LH+A  +G +  + 
Sbjct: 3  GDTPLHIAVVQGNLPAVH 20


>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 408

 Score = 31.1 bits (69), Expect = 0.004
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
          L   K  L  G   +V N     + LH+AA  G+ +V K
Sbjct: 13 LPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAK 50



 Score = 28.8 bits (63), Expect = 0.029
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 22  LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
            +     L +G   +  +   G + L +A   GYI V  
Sbjct: 343 TDIVTLLLKNGASPNEVS-SDGTTPLAIAKRLGYISVTD 380



 Score = 26.5 bits (57), Expect = 0.18
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 21  MLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
            ++  KF L      +    K G S LH AA +G+  ++ 
Sbjct: 309 NIKLVKFLLQHQADVNAKT-KLGYSPLHQAAQQGHTDIVT 347



 Score = 26.5 bits (57), Expect = 0.20
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 22 LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           E AK+ L +    +    K   + LH AA  G+  ++K
Sbjct: 46 TEVAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVK 83



 Score = 24.6 bits (52), Expect = 0.85
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 46 ALHVAAAKGYIKVMK 60
           LHVA+  G++ ++K
Sbjct: 3  PLHVASFMGHLPIVK 17


>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 209

 Score = 30.5 bits (67), Expect = 0.006
 Identities = 5/40 (12%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 21  MLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             E +K  L +    ++ +         VA+ + +  +++
Sbjct: 168 SYEASKALLDNFANREITD-HMDRLPRDVASERLHHDIVR 206



 Score = 29.0 bits (63), Expect = 0.024
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 26 KFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             L+ G   +    KTG ++LH+AA        K
Sbjct: 6  SDLLAQGAELNATMDKTGETSLHLAARFARADAAK 40


>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
          [TaxId: 6239]}
          Length = 277

 Score = 30.1 bits (66), Expect = 0.009
 Identities = 4/25 (16%), Positives = 12/25 (48%)

Query: 36 DVPNPKTGASALHVAAAKGYIKVMK 60
          ++ +P+   + LH  A+    +  +
Sbjct: 26 NIIDPRHNRTVLHWIASNSSAEKSE 50



 Score = 28.9 bits (63), Expect = 0.026
 Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 22  LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
           +E   + +  G   +  +  T  +A  +A A  +  ++ 
Sbjct: 234 IEVVMYLIQQGASVEAVD-ATDHTARQLAQANNHHNIVD 271



 Score = 24.7 bits (52), Expect = 0.73
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 41  KTGASALHVAAAKGYIKVMK 60
           + G + + +AA +G I+V+ 
Sbjct: 219 EDGKTPIMLAAQEGRIEVVM 238


>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 301

 Score = 29.6 bits (65), Expect = 0.011
 Identities = 5/25 (20%), Positives = 14/25 (56%)

Query: 36  DVPNPKTGASALHVAAAKGYIKVMK 60
           ++P  + G + LH   +   ++++K
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVK 124



 Score = 27.3 bits (59), Expect = 0.098
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 41  KTGASALHVAAAKGYIKVMK 60
             G + L++AA  G I ++ 
Sbjct: 257 SNGDTCLNIAARLGNISIVD 276


>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
           I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 255

 Score = 27.7 bits (60), Expect = 0.063
 Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 1/39 (2%)

Query: 22  LEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
               +  L +G          G + L  A  +    + +
Sbjct: 205 ASVLELLLKAGADPTARM-YGGRTPLGSALLRPNPILAR 242



 Score = 27.0 bits (58), Expect = 0.10
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 41 KTGASALHVAAAKGYIKVMK 60
          + G +ALH+A    +   + 
Sbjct: 7  EDGDTALHLAVIHQHEPFLD 26



 Score = 26.2 bits (56), Expect = 0.20
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 22 LEDAKFWLSSGCLGDVPNPKT--GASALHVAAAKGYIKVM 59
               F L      +  + +   G +ALH+AA  G    +
Sbjct: 22 EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61


>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 125

 Score = 26.8 bits (57), Expect = 0.098
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 43 GASALHVAAAKGYIKVMK 60
           A  L  AAA+G ++ ++
Sbjct: 3  SADWLATAAARGRVEEVR 20



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 4/21 (19%), Positives = 8/21 (38%)

Query: 40  PKTGASALHVAAAKGYIKVMK 60
              G   + +A   G+  V +
Sbjct: 99  DAWGRLPVDLAEELGHRDVAR 119


>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 156

 Score = 27.2 bits (58), Expect = 0.10
 Identities = 5/16 (31%), Positives = 10/16 (62%)

Query: 45 SALHVAAAKGYIKVMK 60
          + L  AAA+G ++ + 
Sbjct: 3  NELASAAARGDLEQLT 18



 Score = 25.2 bits (53), Expect = 0.44
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 41  KTGASALHVAAAKGYIKVMK 60
             G +A  +A   G  +V+ 
Sbjct: 131 HKGDTACDLARLYGRNEVVS 150


>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 221

 Score = 26.4 bits (56), Expect = 0.18
 Identities = 4/40 (10%), Positives = 11/40 (27%), Gaps = 1/40 (2%)

Query: 21  MLEDAKFWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             +     L  G   +      G S   +   +   ++ +
Sbjct: 157 NPDLVSLLLKCGADVNRVT-YQGYSPYQLTWGRPSTRIQQ 195



 Score = 24.9 bits (52), Expect = 0.72
 Identities = 5/18 (27%), Positives = 7/18 (38%)

Query: 43 GASALHVAAAKGYIKVMK 60
          G S LH+A       +  
Sbjct: 2  GDSFLHLAIIHEEKALTM 19


>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 153

 Score = 25.6 bits (54), Expect = 0.30
 Identities = 3/20 (15%), Positives = 8/20 (40%)

Query: 41  KTGASALHVAAAKGYIKVMK 60
           K   +A  ++   G   + +
Sbjct: 131 KFCKTAFDISIDNGNEDLAE 150


>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 156

 Score = 25.5 bits (54), Expect = 0.38
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 41  KTGASALHVAAAKGYIKVMK 60
             G + L +A  +G   ++ 
Sbjct: 131 ARGLTPLELALQRGAQDLVD 150



 Score = 23.6 bits (49), Expect = 1.5
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 43 GASALHVAAAKGYIKVMK 60
              L  AAA+G ++ ++
Sbjct: 2  AGDRLSGAAARGDVQEVR 19


>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 154

 Score = 24.2 bits (51), Expect = 0.94
 Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 27  FWLSSGCLGDVPNPKTGASALHVAAAKGYIKVMK 60
             L      ++ N ++G + L +A    +    +
Sbjct: 99  LLLRGKASIEIAN-ESGETPLDIAKRLKHEHCEE 131


>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory
          subunit 10, gankyrin {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 229

 Score = 23.6 bits (49), Expect = 1.8
 Identities = 3/15 (20%), Positives = 6/15 (40%)

Query: 46 ALHVAAAKGYIKVMK 60
           LH A  +     ++
Sbjct: 3  PLHQACMENEFFKVQ 17


>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
          MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 291

 Score = 23.5 bits (49), Expect = 2.3
 Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 8/46 (17%)

Query: 23 EDAKFWLSSGCLGDVPNPKT--------GASALHVAAAKGYIKVMK 60
          E  K W+ S    + P  K           +    A + G  + + 
Sbjct: 12 EQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVL 57



 Score = 23.1 bits (48), Expect = 2.5
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 39  NPKTGASALHVAAAKGYIKVMK 60
               G + LH AA  G  +  +
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACR 249


>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 130

 Score = 22.7 bits (47), Expect = 4.2
 Identities = 3/22 (13%), Positives = 8/22 (36%)

Query: 39  NPKTGASALHVAAAKGYIKVMK 60
           +    A+       +GY +  +
Sbjct: 99  SDMQTAADKCEEMEEGYTQCSQ 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0395    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 224,075
Number of extensions: 7344
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 37
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)