BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9957
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 144/280 (51%), Gaps = 47/280 (16%)
Query: 5 RSSSALFKRAEQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLK 64
+ + A KR EQLKRW SET+ +P + K K+KF G VFLAAC+S D EEVL LL+
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE 61
Query: 65 SGADINTANVDGLTALHQ-------------VSKSAST--------LPLHSLNCGPGCVF 103
GADIN ANVDGLTALHQ V A+ +PLH+
Sbjct: 62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA--------- 112
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALH-----QLKRWEESETNRQPSEM---G 155
A+C D E L+ GA + N +G T L ++ ++E NRQ ++
Sbjct: 113 AASCGYLDIAEY--LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170
Query: 156 NKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTA----LHQAGADLNF 211
+ ++I +L + +D V + G ++ A G T L QA D+N
Sbjct: 171 KEEERIMLRDARQWLNSGHIND---VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227
Query: 212 QDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
+DYDGWTPLHAAAHW + EAC+ILVEN CDM+ N V T
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT 267
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 48/159 (30%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G + A + +K+ V +L+++GAD+N ++ DG T LH
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHH--------------------- 43
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A + KE V L+ GAD+N + DG T LH A
Sbjct: 44 ------------AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 91
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMD 243
GAD+N +D DG TPLH AA +E ++L+ D++
Sbjct: 92 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 78/207 (37%), Gaps = 71/207 (34%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G + A + +K+ V +L+++GAD+N ++ DG T LH
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHH--------------------- 43
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
A + KE V L+ GAD+N + DG T LH
Sbjct: 44 --AAENGHKEVVKLLISKGADVNAKDSDGRTPLHH------------------------- 76
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GAD 208
A + KE V L+ GAD+N + DG T LH A GAD
Sbjct: 77 --------AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQIL 235
+N D DG TPL A E ++L
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G + A + +K+ V +L+++GAD+N ++ DG T LH A GAD+N
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+D DG TPLH AA +E ++L+ D++ K+
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 48/159 (30%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G + A + +K+ V +L+++GAD+N ++ DG T LH
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHY--------------------- 43
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A KE V L+ GAD+N + DG T LH A
Sbjct: 44 ------------AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 91
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMD 243
GAD+N +D DG TPLH AA +E ++L+ D++
Sbjct: 92 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 77/207 (37%), Gaps = 71/207 (34%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G + A + +K+ V +L+++GAD+N ++ DG T LH +K
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGH--------------- 49
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
KE V L+ GAD+N + DG T LH
Sbjct: 50 --------KEIVKLLISKGADVNAKDSDGRTPLHY------------------------- 76
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GAD 208
A KE V L+ GAD+N + DG T LH A GAD
Sbjct: 77 --------AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQIL 235
+N D DG TPL A E ++L
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G + A + +K+ V +L+++GAD+N ++ DG T LH A GAD+N
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+D DG TPLH AA +E ++L+ D++ K+
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + DG T LH R E
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI------------ 50
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---------------Q 204
V LLK+GAD+N + DG T LH +
Sbjct: 51 ---------------------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 205 AGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
AGAD+N +D DG+TPLH AA E ++L++ D++ ++
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 75/207 (36%), Gaps = 71/207 (34%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + DG T LH ++
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHL-------------- 48
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
E V LLK+GAD+N + DG T LH R E
Sbjct: 49 ---------EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI---------------- 83
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---------------QAGAD 208
V LLK+GAD+N + DG T LH +AGAD
Sbjct: 84 -----------------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQIL 235
+N QD G TP A + ++L
Sbjct: 127 VNAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + DG T LH R E
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI------------ 62
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---------------Q 204
V LLK+GAD+N + DG T LH +
Sbjct: 63 ---------------------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 205 AGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
AGAD+N +D DG+TPLH AA E ++L++ D++ ++
Sbjct: 102 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 143
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 74/207 (35%), Gaps = 71/207 (34%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + DG T LH ++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHL-------------- 60
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
E V LLK+GAD+N + DG T LH R E
Sbjct: 61 ---------EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI---------------- 95
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---------------QAGAD 208
V LLK+GAD+N + DG T LH +AGAD
Sbjct: 96 -----------------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQIL 235
+N QD G T + + +IL
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + DG T LH R E
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI------------ 50
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---------------Q 204
V LLK+GAD+N + DG T LH +
Sbjct: 51 ---------------------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 205 AGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
AGAD+N +D DG+TPLH AA E ++L++ D++ ++
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 75/207 (36%), Gaps = 71/207 (34%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + DG T LH ++
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHL-------------- 48
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
E V LLK+GAD+N + DG T LH R E
Sbjct: 49 ---------EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI---------------- 83
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---------------QAGAD 208
V LLK+GAD+N + DG T LH +AGAD
Sbjct: 84 -----------------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQIL 235
+N QD G TP A + ++L
Sbjct: 127 VNAQDKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A A+ +EV L+ +GAD+N + +GLT LH
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLH---------------------- 44
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A A+ E V LLK+GAD+N ++ G+T LH A
Sbjct: 45 -----------LAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D GWTPLH AA Q E ++L+++ D++ ++
Sbjct: 94 HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G + A + +K+ V +LL++GAD+N ++ DG T LH E + G P
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKS-GADINTANVDGLTALHQA------------- 205
K S G L A + +EV+ LL S GAD N + DG T LH A
Sbjct: 65 -AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 206 --GADLNFQDYDGWTPLHAAAHWAQREACQIL 235
GAD N D DG TPL A E ++L
Sbjct: 124 SQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G + A + +K+ V +LL++GAD+N ++ DG T LH A GAD N
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+D DG TPLH AA +E ++L+ D + K+
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + DG T LH
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLH---------------------- 52
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A ++ E V LLK+GAD+N +++ G+T LH A
Sbjct: 53 -----------LAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D DG TPLH AA + E ++L+++ D++ ++
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQD 143
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G + A + +K+ V +LL++GAD N ++ DG T LH E + G P
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKS-GADINTANVDGLTALHQA------------- 205
K S G L A + +E++ LL S GAD N + DG T LH A
Sbjct: 65 -AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 206 --GADLNFQDYDGWTPLHAAAHWAQREACQIL 235
GAD N D DG TPL A E ++L
Sbjct: 124 SKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G + A + +K+ V +LL++GAD N ++ DG T LH A GAD N
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+D DG TPLH AA +E ++L+ D + K+
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N A+ G T LH
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLH---------------------- 52
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A S E V LLK GAD++ ++V G T LH A
Sbjct: 53 -----------LAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D DG TPLH AA W E ++L+++ D++ ++
Sbjct: 102 NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQD 143
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSA-----STLPLHSLNCG 98
G L A + +EV L+ +GAD+N A+ G T LH + S L H +
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 99 PGCVF----LAACASSDKEEVLN-LLKSGADINTANVDGLTALHQLKRW 142
VF L A E++ LLK+GAD+N + DG+T LH +W
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKW 123
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N A+V G T LH A GAD+N
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D G TPLH AAH+ E ++L++N D++ K+
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N A+V G T LH W E
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEI------------ 62
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
V LLK+GAD+N + G T LH A
Sbjct: 63 ---------------------VEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N +D +G TPLH AA+ E ++L++ D++ ++
Sbjct: 102 NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQD 143
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
GAD+N D GWTPLH AA+W E ++L++N D++ + + ST
Sbjct: 37 GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGST 82
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 74/207 (35%), Gaps = 71/207 (34%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N A+V G T LH
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLH---------------------- 52
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
A E V LLK+GAD+N + G T LH + E
Sbjct: 53 -LAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEI---------------- 95
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GAD 208
V LLK+GAD+N + +G+T LH A GAD
Sbjct: 96 -----------------VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQIL 235
+N QD G T + + + +IL
Sbjct: 139 VNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 65/162 (40%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + GLT LH
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHL--------------------- 53
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A S E V LLK GAD++ A+V G T LH A
Sbjct: 54 ------------AAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D G TPLH AA E ++L++ D++ ++
Sbjct: 102 YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N + GLT LH A GAD++
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
D G+TPLH AA E ++L++ D++ + ST
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGST 115
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 68/190 (35%), Gaps = 71/190 (37%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + GLT LH
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHL--------------------- 53
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
A S E V LLK GAD++ A+V G T LH
Sbjct: 54 --AAVSGHLEIVEVLLKHGADVDAADVYGFTPLHL------------------------- 86
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GAD 208
A + E V LLK GAD+N ++ G T LH A GAD
Sbjct: 87 --------AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 209 LNFQDYDGWT 218
+N QD G T
Sbjct: 139 VNAQDKFGKT 148
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD N + G T LH
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHM--------------------- 41
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A A E V LL++GAD+N + +G T LH A
Sbjct: 42 ------------AAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N +D G TPL+ AA+W E ++L+++ D++ ++
Sbjct: 90 YGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQD 131
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A A E V LL++GAD+N + +G T LH A +
Sbjct: 42 AAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHL-----------------------AASL 78
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESET 147
E V LLK GAD+N + G+T L+ W E
Sbjct: 79 GHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEI 116
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + G T LH L W +G+ P+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLH-LAAW-----------IGH-PE 61
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
++ LLK GAD+N + DG T LH A
Sbjct: 62 IVEV--------------------LLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N QD G TPLH AA E ++L+++ D++ ++
Sbjct: 102 YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQD 143
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LLK GAD+N + DG T LH + + E V LLK
Sbjct: 66 LLKHGADVNARDTDGWTPLHLAADNGHL-----------------------EIVEVLLKY 102
Query: 122 GADINTANVDGLTALH 137
GAD+N + GLT LH
Sbjct: 103 GADVNAQDAYGLTPLH 118
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + G T LH + E
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEI------------ 62
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
V LLK+GAD+N + G+T LH A
Sbjct: 63 ---------------------VEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D G+TPLH AA E ++L++N D++ ++
Sbjct: 102 NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQD 143
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
GAD+N +D+ GWTPLH AAH+ E ++L++N D++ K+ + T
Sbjct: 37 GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVT 82
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 24/98 (24%)
Query: 40 KFSSGCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCG 98
K S G L A E++ LLK+GAD+N ++ G T LH +K
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHL--------- 126
Query: 99 PGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTAL 136
E V LLK+GAD+N + G TA
Sbjct: 127 --------------EIVEVLLKNGADVNAQDKFGKTAF 150
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + G T LH
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLH---------------------- 52
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A + E V LLK+GAD+N + G+T L A
Sbjct: 53 -----------LAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D +G TPLH AA + E ++L++N D++ ++
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
GAD+N +D GWTPLH AA E ++L++N D++ ++ T
Sbjct: 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMT 82
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N + DGLT LH A GAD+N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+D G TPLH AA E ++L+++ D++ ++
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---QLKRWEESETNRQPSEMGN 156
G L A + +EV L+ +GAD+N + DGLT LH QL E E + N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 157 KPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTAL 202
F + LAA E V LLK GAD+N + G TA
Sbjct: 75 AEDN--FGITPLHLAAIRGH-LEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + DGLT LH ++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHL-------------- 60
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
E V LLK GAD+N + G+T LH
Sbjct: 61 ---------EIVEVLLKYGADVNAEDNFGITPLH 85
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + G T LH
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLH---------------------- 52
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A + E V LLK GAD+N + G T LH A
Sbjct: 53 -----------LAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N +DY+G+TPLH AA+ E ++L++ D++ ++
Sbjct: 102 HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N + G T LH A GAD+N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
D G TPLH AA E ++L+++ D++ K+Y
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY 111
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSL-------- 95
G L A + +EV L+ +GAD+N + G T LH +K+ + L
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 96 ---NCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
N G + LAA + E V LLK GAD+N + +G T LH
Sbjct: 75 AWDNYGATPLHLAAD-NGHLEIVEVLLKHGADVNAKDYEGFTPLH 118
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 23/75 (30%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LLK GAD+N + +G T LH A E V LLK
Sbjct: 99 LLKHGADVNAKDYEGFTPLH-----------------------LAAYDGHLEIVEVLLKY 135
Query: 122 GADINTANVDGLTAL 136
GAD+N + G TA
Sbjct: 136 GADVNAQDKFGKTAF 150
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N ++ G T LH + E
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEI------------ 62
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
V LLK+GAD+N + G+T LH A
Sbjct: 63 ---------------------VEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D++G+TPLH AA+ E ++L+++ D++ ++
Sbjct: 102 NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQD 143
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N ++ G T LH A GAD+N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
D G TPLH AA E ++L++N D++ ++
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH 111
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 15/78 (19%)
Query: 184 LLKSGADINTANVDGLTALH---------------QAGADLNFQDYDGWTPLHAAAHWAQ 228
LL++GAD+N + +G T LH +AGAD+N +D +G TPLH AA
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80
Query: 229 REACQILVENFCDMDVKN 246
E ++L+E D++ K+
Sbjct: 81 LEVVKLLLEAGADVNAKD 98
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 48/135 (35%)
Query: 118 LLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSD 177
LL++GAD+N + +G T LH R E +K
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEV-------------VKL-------------- 53
Query: 178 KEEVLNLLKSGADINTANVDGLTALH---------------QAGADLNFQDYDGWTPLHA 222
LL++GAD+N + +G T LH +AGAD+N +D +G TPLH
Sbjct: 54 ------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Query: 223 AAHWAQREACQILVE 237
AA E ++L+E
Sbjct: 108 AARNGHLEVVKLLLE 122
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---------------QAGADLN 210
G L A + +EV L+ +GAD+N + G+T LH + AD+N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
D GWTPLH AA+ E ++L++ D++ +Y
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY 111
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + G+T LH
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLH---------------------- 52
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
+ ++G + E + LLK AD+N ++ G T LH A
Sbjct: 53 -LVVNNGHL----------EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N DY G+TPLH AA E ++L++ D++ ++
Sbjct: 102 YGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD 143
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 64/162 (39%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + GLT LH
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLH---------------------- 52
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A E V LLK GAD+N ++ G T LH A
Sbjct: 53 -----------LAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D G TPLH AA E ++L+++ D++ ++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
GAD+N D G TPLH AA + E ++L+++ D++ + ST
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGST 82
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 64/162 (39%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + GLT LH
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLH---------------------- 52
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
A E V LLK GAD+N ++ G T LH A
Sbjct: 53 -----------LAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D G TPLH AA E ++L+++ D++ ++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
GAD+N D G TPLH AA + E ++L+++ D++ + + ST
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGST 82
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N + G T LH A GAD+N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D DG TPLH AA + E ++L+++ D++ ++
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQD 110
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
GAD+N D G TPLH AA + E ++L+++ D++ + ST
Sbjct: 37 GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGST 82
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 25/95 (26%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + G T LH
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLH---------------------- 52
Query: 104 LAACASSDKEEVLN-LLKSGADINTANVDGLTALH 137
A D E++ LLK GAD+N + DG T LH
Sbjct: 53 --LAADYDHLEIVEVLLKHGADVNAHDNDGSTPLH 85
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 24/94 (25%)
Query: 44 GCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCV 102
G L A D E++ LLK GAD+N + DG T LH
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLH--------------------- 85
Query: 103 FLAACASSDKEEVLNLLKSGADINTANVDGLTAL 136
LAA E V LLK GAD+N + G TA
Sbjct: 86 -LAALFGH-LEIVEVLLKHGADVNAQDKFGKTAF 117
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N + G T LH A GAD+N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
D+ G TPLH AA E ++L++ D++ + + ST
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGST 115
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 62/162 (38%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + G T LH R E
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEI------------ 62
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
V LLK+GAD+N + G T LH A
Sbjct: 63 ---------------------VEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D G TPLH AA E ++L++ D++ ++
Sbjct: 102 YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQD 143
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 69/207 (33%), Gaps = 71/207 (34%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + G T LH ++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHL-------------- 60
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
E V LLK+GAD+N + G T LH
Sbjct: 61 ---------EIVEVLLKNGADVNALDFSGSTPLH-------------------------- 85
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GAD 208
A E V LLK GAD+N + G T LH A GAD
Sbjct: 86 -------LAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQIL 235
+N QD G T + + +IL
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 65/162 (40%), Gaps = 48/162 (29%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
G L A + +EV L+ +GAD+N + G T LH
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLH---------------------- 52
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------- 205
LAA E V LLK GAD+N A+ G T LH A
Sbjct: 53 ----------LAAIKGH-LEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N D G+TPLH AA E ++L++ D++ ++
Sbjct: 102 NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQD 143
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 74/207 (35%), Gaps = 71/207 (34%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + G T LH
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLH---------------------- 52
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
LAA E V LLK GAD+N A+ +MG+ P +
Sbjct: 53 LAAIKGH-LEIVEVLLKHGADVNAAD-----------------------KMGDTPLHLAA 88
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GAD 208
G + E V LLK+GAD+N + G T LH A GAD
Sbjct: 89 LYGHL----------EIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQIL 235
+N QD G T + + +IL
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N + GLT LH A GAD+N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D G TPLH A + E ++L+++ D++ ++
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
GAD+N +D G TPLH AA E ++L++N D++ + + T
Sbjct: 37 GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGET 82
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 25/105 (23%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + GLT LH
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLH---------------------- 52
Query: 104 LAACASSDKEEVLN-LLKSGADINTANVDGLTALHQLKRWEESET 147
A +D E++ LLK+GAD+N + G T LH + + E
Sbjct: 53 --LAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEI 95
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 24/94 (25%)
Query: 44 GCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCV 102
G L A +D E++ LLK+GAD+N + G T LH V+
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHL------------- 93
Query: 103 FLAACASSDKEEVLNLLKSGADINTANVDGLTAL 136
E V LLK GAD+N + G TA
Sbjct: 94 ----------EIVEVLLKHGADVNAQDKFGKTAF 117
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N + G+T LH A GAD+N
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+D G TPLH AA E ++L+E D++ ++
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 23/94 (24%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + G+T LH +K
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHL-------------- 60
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
E V LLK GAD+N ++ G T LH
Sbjct: 61 ---------EIVEVLLKHGADVNARDIWGRTPLH 85
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 15/69 (21%)
Query: 184 LLKSGADINTANVDGLTALH---------------QAGADLNFQDYDGWTPLHAAAHWAQ 228
LL++GAD+N + +G T LH +AGAD+N +D +G TPLH AA
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80
Query: 229 REACQILVE 237
E ++L+E
Sbjct: 81 LEVVKLLLE 89
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 204 QAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+AGAD+N +D +G TPLH AA E ++L+E D++ K+
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL++GAD+N + +G T LH +++ E V LL++
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLAARNGHL-----------------------EVVKLLLEA 57
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMG 155
GAD+N + +G T LH R E + E G
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N + GLT L+ A GAD+N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D G+TPLH AA E ++L+++ D++ ++
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 23/94 (24%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + GLT L+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLY---------------------- 52
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
A A E V LLK+GAD+N + G T LH
Sbjct: 53 -LATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH 85
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 23/87 (26%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A A E V LLK+GAD+N + G T LH A
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH---------------------LAAFIGH 92
Query: 110 SDKEEVLNLLKSGADINTANVDGLTAL 136
+ EV LLK GAD+N + G TA
Sbjct: 93 LEIAEV--LLKHGADVNAQDKFGKTAF 117
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 160 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---------------Q 204
++KF+ + L + + + V ++ D + N +G+TALH Q
Sbjct: 32 RVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 205 AGADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
G ++N D DGWTPLH AA + C+ LVE+
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 23/100 (23%)
Query: 38 KIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNC 97
++KF+ + L + + + V ++ D + N +G+TALH
Sbjct: 32 RVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHN--------------- 76
Query: 98 GPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
A CA E V L++ G ++N A+ DG T LH
Sbjct: 77 -------AVCAGH-TEIVKFLVQFGVNVNAADSDGWTPLH 108
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N + G+T LH A GAD+N
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D G TPLH AA E ++L+E D++ ++
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + G+T LH +K
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHL-------------- 60
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
E V LLK GAD+N +++ G T LH
Sbjct: 61 ---------EIVEVLLKHGADVNASDIWGRTPLH 85
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L+ +GAD+N + G+T LH A GAD+N
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D G TPLH AA E ++L+E D++ ++
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 23/94 (24%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + G+T LH +K
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHL-------------- 60
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
E V LLK GAD+N ++ G T LH
Sbjct: 61 ---------EIVEVLLKHGADVNASDSWGRTPLH 85
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDG 216
A + EEV LL GAD+N + DG T LH A GAD+N + DG
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
Query: 217 WTPLHAAAHWAQREACQILVENFCDMDVKNY 247
TP H A E ++L D++ +++
Sbjct: 76 NTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 23/92 (25%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + EEV LL GAD+N + DG T LH +K+
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHA-------------------- 55
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKR 141
E V LL GAD+N + DG T H K+
Sbjct: 56 ---EIVKLLLAKGADVNARSKDGNTPEHLAKK 84
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 61/157 (38%), Gaps = 28/157 (17%)
Query: 51 CASSDKEEVLNLLKSGADINTANVDGLTALH--QVSKSASTLPLHSLNCGPGCVFLAACA 108
CA + K + + SG +N + DG + LH + A +PL
Sbjct: 62 CAPAQKR-LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPL---------------- 104
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
LLK GA+ N D LH + + + + KP K S
Sbjct: 105 ---------LLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTP 155
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
+ AC+ E V LL+ GA IN +N G TALH+A
Sbjct: 156 LIYACSGGHHELVALLLQHGASINASNNKGNTALHEA 192
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 35 KPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQ 82
KP K S + AC+ E V LL+ GA IN +N G TALH+
Sbjct: 144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHE 191
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 71/199 (35%), Gaps = 38/199 (19%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL+ A N A +GLT LH A ++ + V LL
Sbjct: 165 LLERDAHPNAAGKNGLTPLH-----------------------VAVHHNNLDIVKLLLPR 201
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
G ++ +G T LH + + E R + G A E V
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261
Query: 182 LNLLKSGADINTANVDGLTALH---------------QAGADLNFQDYDGWTPLHAAAHW 226
LL A+ N N GLT LH + G ++ G+TPLH A+H+
Sbjct: 262 ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321
Query: 227 AQREACQILVENFCDMDVK 245
+ + L+++ D++ K
Sbjct: 322 GNIKLVKFLLQHQADVNAK 340
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 81/225 (36%), Gaps = 67/225 (29%)
Query: 59 VLNLLKSGADINTANVDGLTALHQVSKSAST---------------------LPLHSLNC 97
V NLL+ GA N +NV T LH +++ T PLH C
Sbjct: 30 VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH---C 86
Query: 98 GPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESET-----NRQPS 152
A V LL++ A+ N A G T LH R ET ++ S
Sbjct: 87 --------AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 138
Query: 153 EM-----GNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-- 205
+ G P + G V +A LL+ A N A +GLT LH A
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAEL----------LLERDAHPNAAGKNGLTPLHVAVH 188
Query: 206 -------------GADLNFQDYDGWTPLHAAAHWAQREACQILVE 237
G + ++G+TPLH AA Q E + L++
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 157 KPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA----------- 205
K ++ + + + L A + + E V +K D + N +G+TALH A
Sbjct: 13 KARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDF 72
Query: 206 ----GADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
GA++N D GWTPLH AA C LV++
Sbjct: 73 LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH 109
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 23/103 (22%)
Query: 35 KPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHS 94
K ++ + + + L A + + E V +K D + N +G+TALH
Sbjct: 13 KARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN------------ 60
Query: 95 LNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
A ++ V L+ +GA++N+ + G T LH
Sbjct: 61 -----------AICGANYSIVDFLITAGANVNSPDSHGWTPLH 92
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 106 ACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSS 165
AC++ E V LL+ G +N + G + LH E + G + + +
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN-QN 105
Query: 166 GCVFLAACASSDKEEV-LNLLKSGADINTANVDGLTALHQAGA---------------DL 209
GC L AS ++ E+ + LL+ GA+ + + TA+H+A A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST 165
Query: 210 NFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
N QD +G TPLH A + E ++LV + ++N
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 202
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDG 216
AC++ E V LL+ G +N + G + LH A GA +N + +G
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG 106
Query: 217 WTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
TPLH AA + E +L+E + D K++ +T
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEAT 141
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 106 ACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSS 165
AC++ E V LL+ G +N + G + LH E + G + + +
Sbjct: 48 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN-QN 106
Query: 166 GCVFLAACASSDKEEV-LNLLKSGADINTANVDGLTALHQAGA---------------DL 209
GC L AS ++ E+ + LL+ GA+ + + TA+H+A A
Sbjct: 107 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST 166
Query: 210 NFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
N QD +G TPLH A + E ++LV + ++N
Sbjct: 167 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 203
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDG 216
AC++ E V LL+ G +N + G + LH A GA +N + +G
Sbjct: 48 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG 107
Query: 217 WTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
TPLH AA + E +L+E + D K++ +T
Sbjct: 108 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEAT 142
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 181 VLNLLKSGADINTANVDGLTALH---------------QAGADLNFQDYDGWTPLHAAAH 225
V ++ D + N +G+TALH Q G ++N D DGWTPLH AA
Sbjct: 53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Query: 226 WAQREACQILVEN 238
+ C+ LVE+
Sbjct: 113 CNNVQVCKFLVES 125
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 17/157 (10%)
Query: 106 ACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSS 165
AC++ E V LL+ G +N + G + LH E + G + +
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVN-QN 105
Query: 166 GCVFLAACASSDKEEV-LNLLKSGADINTANVDGLTALHQAGA---------------DL 209
GC L AS ++ E+ + LL+ GA+ + + TA+H+A A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 210 NFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
N QD +G TPLH A + E + LV + ++N
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDG 216
AC++ E V LL+ G +N + G + LH A GA +N + +G
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG 106
Query: 217 WTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
TPLH AA + E +L+E + D K++ +T
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 17/157 (10%)
Query: 106 ACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSS 165
AC++ E V LL+ G +N + G + LH E + G + +
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN-QN 105
Query: 166 GCVFLAACASSDKEEV-LNLLKSGADINTANVDGLTALHQAGA---------------DL 209
GC L AS ++ E+ + LL+ GA+ + + TA+H+A A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 210 NFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
N QD +G TPLH A + E + LV + ++N
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDG 216
AC++ E V LL+ G +N + G + LH A GA +N + +G
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106
Query: 217 WTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
TPLH AA + E +L+E + D K++ +T
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
LL+ GAD++ + GL LH A GA +N D +TPLH AA +
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
Query: 229 REACQILVENFCDMDVKN 246
E C++L+++ D KN
Sbjct: 125 YEICKLLLQHGADPTKKN 142
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 23/99 (23%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL+ GAD++ + GL LH AC+ E L+K
Sbjct: 65 LLQHGADVHAKDKGGLVPLHN-----------------------ACSYGHYEVAELLVKH 101
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKK 160
GA +N A++ T LH+ + E + + G P K
Sbjct: 102 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 140
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
LL+ GAD++ + GL LH A GA +N D +TPLH AA +
Sbjct: 63 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 122
Query: 229 REACQILVENFCDMDVKN 246
E C++L+++ D KN
Sbjct: 123 YEICKLLLQHGADPTKKN 140
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 23/99 (23%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL+ GAD++ + GL LH AC+ E L+K
Sbjct: 63 LLQHGADVHAKDKGGLVPLHN-----------------------ACSYGHYEVAELLVKH 99
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKK 160
GA +N A++ T LH+ + E + + G P K
Sbjct: 100 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 138
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
LL+ GAD++ + GL LH A GA +N D +TPLH AA +
Sbjct: 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
Query: 229 REACQILVENFCDMDVKN 246
E C++L+++ D KN
Sbjct: 121 YEICKLLLQHGADPTKKN 138
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 23/99 (23%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL+ GAD++ + GL LH AC+ E L+K
Sbjct: 61 LLQHGADVHAKDKGGLVPLHN-----------------------ACSYGHYEVAELLVKH 97
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKK 160
GA +N A++ T LH+ + E + + G P K
Sbjct: 98 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 191 INTANVDGLTALHQAGADLNFQDYDG-WTPLHAAAHWAQREACQILVENFCD 241
+ +VD + L + GA++NFQ+ +G WTPLH A ++ + ++L+ + D
Sbjct: 33 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 84
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 36/182 (19%)
Query: 102 VFLAACASSDKEEVLNLLKSGADINTANVDG-LTALHQLKRWEESETNRQPSEMGNKPKK 160
+ + A + D + V LL+ GA++N +G T LH + + G P
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 161 IKFSSGCVF-LAACASSDKEEVLNL-LKSGADINTANVDGLTA---------------LH 203
K + F LAA A S K +L L L GAD+N + G TA L+
Sbjct: 88 RKKNGATPFILAAIAGSVK--LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 145
Query: 204 QAGADLNF-----QDYD-----GWTPLHAAAHWAQREACQILVE------NFCDMDVKNY 247
+ GA++N +D + G T L AA E +IL++ N CD +N
Sbjct: 146 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 205
Query: 248 VV 249
++
Sbjct: 206 LI 207
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 191 INTANVDGLTALHQAGADLNFQDYDG-WTPLHAAAHWAQREACQILVENFCD 241
+ +VD + L + GA++NFQ+ +G WTPLH A ++ + ++L+ + D
Sbjct: 13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 32/180 (17%)
Query: 102 VFLAACASSDKEEVLNLLKSGADINTANVDG-LTALHQLKRWEESETNRQPSEMGNKPKK 160
+ + A + D + V LL+ GA++N +G T LH + + G P
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 161 IKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTA---------------LHQA 205
K + FL A + + + L GAD+N + G TA L++
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 206 GADLNF-----QDYD-----GWTPLHAAAHWAQREACQILVE------NFCDMDVKNYVV 249
GA++N +D + G T L AA E +IL++ N CD +N ++
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GAD+N +D DG+TPLH AA E ++L++ D++ ++
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 23/93 (24%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L+ +GAD+N + DG T LH ++
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHL-------------- 48
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTAL 136
E V LLK+GAD+N + G TA
Sbjct: 49 ---------EIVEVLLKAGADVNAQDKFGKTAF 72
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKR 141
G L A + +EV L+ +GAD+N + DG T LH R
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAR 44
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 78/199 (39%), Gaps = 48/199 (24%)
Query: 69 INTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGA-DINT 127
+N A+ +G TALH S S + P+ V LL SG ++
Sbjct: 104 VNIADSNGNTALH-YSVSHANFPV----------------------VQQLLDSGVCKVDK 140
Query: 128 ANVDG-----LTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVL 182
N G LTAL LK ++ ET Q +GN K + + A + + V
Sbjct: 141 QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVK 200
Query: 183 NLLKSGADINTANVDGLTAL-------HQAGA---------DLNFQDYDGWTPLHAAAHW 226
LL AD+N + DG TAL H+ A D++ D DG T L A
Sbjct: 201 ALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDA 260
Query: 227 AQREACQILVENFCDMDVK 245
Q E +L + M++K
Sbjct: 261 GQSEIASML---YSRMNIK 276
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 17 LKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDG 76
LK ++ ET Q +GN K + + A + + V LL AD+N + DG
Sbjct: 157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDG 216
Query: 77 LTAL 80
TAL
Sbjct: 217 STAL 220
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 124 DINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLN 183
D+ N DGLTALH E ET + E G + SG L ++ ++
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 184 LLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMD 243
LL Q GA++N Q Y G + LH+A+ + LV + D
Sbjct: 168 LLL-----------------QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210
Query: 244 VKN 246
+KN
Sbjct: 211 LKN 213
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
G L A + +EV L +GAD+N + G T LH A GAD+N
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 211 FQDYDGWTPLHAAAHWAQR-EACQILVENFCDMDVKN 246
G TPLH AA WA E ++L+++ D++ ++
Sbjct: 75 ATGNTGRTPLHLAA-WADHLEIVEVLLKHGADVNAQD 110
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 24/101 (23%)
Query: 44 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
G L A + +EV L +GAD+N + G T LH
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLH---------------------- 52
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEE 144
LAA E V LLK+GAD+N G T LH L W +
Sbjct: 53 LAAMLGH-LEIVEVLLKNGADVNATGNTGRTPLH-LAAWAD 91
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---QLKRWEESETNRQPSEMGN 156
G L A + +EV L +GAD+N + G T LH L E E + N
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 157 KPKKIKFSSGCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTAL 202
++G L A +D E++ LLK GAD+N + G TA
Sbjct: 75 ATG----NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 26/152 (17%)
Query: 118 LLKSGADINTANVDGLTALHQ------LKRWEESETNRQPSEMGNKPKKIKFSSGCVFLA 171
LL +GAD N+ + G T LH + ++ NR N ++ + + LA
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT----NLNARMHDGTTPLILA 125
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQAGA---------------DLNFQDYDG 216
A + + V +L+ + ADIN A+ G TALH A A + + QD
Sbjct: 126 ARLAIEGM-VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD 184
Query: 217 WTPLHAAAHWAQREACQILVENFCDMDVKNYV 248
TPL AA EA + L++NF + ++ +++
Sbjct: 185 ETPLFLAAREGSYEASKALLDNFANREITDHM 216
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 183 NLLKSGADIN-TANVDGLTALH---------------QAGADLNFQDYDGWTPLHAAAHW 226
+LL GA++N T + G T+LH AGAD N QD G TPLHAA
Sbjct: 35 DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA 94
Query: 227 AQREACQILVEN 238
QIL+ N
Sbjct: 95 DAMGVFQILLRN 106
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 72/239 (30%)
Query: 66 GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEE-----VLNLLK 120
G D+N DG T PL +C G + +S++EE + + +
Sbjct: 1 GMDVNVRGPDGFT------------PLMIASCSGGGL---ETGNSEEEEDAPAVISDFIY 45
Query: 121 SGADI-NTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKE 179
GA + N + G TALH R+ S+ ++ E + I+ + G L A S+D +
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQ 104
Query: 180 EVL-----------------------------------NLLKSGADINTANVDGLTALH- 203
V +L+ S AD+N + G +ALH
Sbjct: 105 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 164
Query: 204 --------------QAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYV 248
+ GA+ + Q+ TPL AA E ++L+++F + D+ +++
Sbjct: 165 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 223
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 197 DGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFC-DMDVKNYVVST 251
D L +A AD N QD G TPLHAA + QIL+ N D+D + + +T
Sbjct: 72 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 127
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 72/198 (36%), Gaps = 45/198 (22%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
AC V LLK GA +N D T L AC S
Sbjct: 43 ACLGGHLSCVKILLKHGAQVNGVTADWHTPL-----------------------FNACVS 79
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESE-TNRQPSEMGNKPKKIKFSSGCV 168
+ V LL+ GA + + D + +H+ R E N + GN KI +
Sbjct: 80 GSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 138
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQ 228
+LA C + + V LL+SGAD+N G D +PLHA A A
Sbjct: 139 YLA-CENQQRACVKKLLESGADVNQGK----------GQD---------SPLHAVARTAS 178
Query: 229 REACQILVENFCDMDVKN 246
E +L++ D KN
Sbjct: 179 EELACLLMDFGADTQAKN 196
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 33 GNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSAS 88
GN KI ++LA C + + V LL+SGAD+N + LH V+++AS
Sbjct: 125 GNIDHKISHLGTPLYLA-CENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTAS 178
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 89/233 (38%), Gaps = 51/233 (21%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCV---------FLAACASSDK 112
LL+ GAD++ + GL LH L CV L AS ++
Sbjct: 77 LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136
Query: 113 EEVLNLLKS-GADINTANVDGLTAL-------------HQLKRWEESETNRQPS------ 152
EV +LL S GAD N G +A+ ++ K + R+
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196
Query: 153 ----EMGN--KPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA- 205
E+ N +P+ + + C +A+ K+ LL+ GA++N N D +T LH A
Sbjct: 197 TLALEIINFKQPQSHETALHCA-VASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA 255
Query: 206 --------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDV 244
GA +N D G T LH AA + C++L+ D +
Sbjct: 256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI 308
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
LL+ GAD++ + GL LH A GA +N D +TPLH AA +
Sbjct: 77 LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136
Query: 229 REACQILVENFCDMDVKN 246
E C +L+ + D + N
Sbjct: 137 VEVCSLLLSHGADPTLVN 154
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGL--TALH---------------QAGADLNFQ 212
L A S EE L L + ++N DG T LH Q GAD++ +
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 213 DYDGWTPLHAAAHWAQREACQILVEN 238
D G PLH A + E ++L+++
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKH 113
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 194 ANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
++ + L Q G+D N +D+ GWTPLH A + + ++L+++ ++ Y
Sbjct: 21 GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY 74
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQAG----------------ADLNFQ 212
+ A ++ E V L+K+GA ++ + +G T LH A D+N Q
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107
Query: 213 DYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D GWTP+ A + + ++L+ D+++++
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD 141
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 118 LLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGN--KPKKIKFSSGCVFLAACAS 175
L+++GA+I+T + D T L + E + + G PK + S+ C+ LAA
Sbjct: 30 LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST-CLHLAA-KK 87
Query: 176 SDKEEVLNLLKSG-ADINTAN---------------VDGLTALHQAGADLNFQDYDGWTP 219
E V LL +G D+N + VD + L G+D+N +D +
Sbjct: 88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC 147
Query: 220 LHAAAHWAQREACQILVENFCDMDVKN 246
LH AA + +IL+ CD+ N
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVN 174
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 39/201 (19%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
L+++GA+I+T + D T L + A ++ E V L+K+
Sbjct: 30 LVQAGANIDTCSEDQRTPL-----------------------MEAAENNHLEAVKYLIKA 66
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
GA ++ + +G T LH + E + G + G + ++
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Query: 182 LNLLKS-GADINTAN---------------VDGLTALHQAGADLNFQDYDGWTPLHAAAH 225
+ LL S G+DIN + VD L A DL+ + G +PLH AA
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 226 WAQREACQILVENFCDMDVKN 246
+ + + + D+ +KN
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKN 207
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 197 DGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFC-DMDVKNY 247
D L +A AD N QD G TPLHAA + QIL+ N D+D + +
Sbjct: 71 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 72/237 (30%)
Query: 68 DINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEE-----VLNLLKSG 122
D+N DG T PL +C G + +S++EE + + + G
Sbjct: 2 DVNVRGPDGFT------------PLMIASCSGGGL---ETGNSEEEEDAPAVISDFIYQG 46
Query: 123 ADI-NTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
A + N + G TALH R+ S+ ++ E + I+ + G L A S+D + V
Sbjct: 47 ASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 182 L-----------------------------------NLLKSGADINTANVDGLTALH--- 203
+L+ S AD+N + G +ALH
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165
Query: 204 ------------QAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYV 248
+ GA+ + Q+ TPL AA E ++L+++F + D+ +++
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 222
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 197 DGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFC-DMDVKNY 247
D L +A AD N QD G TPLHAA + QIL+ N D+D + +
Sbjct: 71 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 17/168 (10%)
Query: 97 CGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGN 156
G + LAA A S + LL++ AD N + G T LH + +
Sbjct: 56 TGATALHLAA-AYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 157 KPKKIKFSSGCVFLAACASSDKEEVL-NLLKSGADINTANVDGLTALH------------ 203
+ G L A E +L +L+ S AD+N + G +ALH
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 174
Query: 204 ---QAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYV 248
+ GA+ + Q+ TPL AA E ++L+++F + D+ +++
Sbjct: 175 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 222
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 173 CASSDKEEVLNLLKSGADINTANVDGLTAL---------------HQAGADLNFQDY-DG 216
A E+ L+ L D++ + +G TAL +AGADL+ +D G
Sbjct: 51 AARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 217 WTPLHAAAHWAQREACQILVENFCDMDVKN 246
T LH AA + + E + LVE D++V++
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVED 140
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSG 166
A E+ L+ L D++ + +G TAL + + R +E G G
Sbjct: 51 AARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 167 CVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALHQA 205
L A + EV+ L++ GADI + GLTAL A
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 28/129 (21%)
Query: 45 CVFLAACASSDKEEVLNLLKSGADINTANV-DGLTALHQVSKSASTLPLHSLNCGPGCVF 103
+ A SDK V L ++GAD++ ++ GLTALH
Sbjct: 79 ALLFVAGLGSDKC-VRLLAEAGADLDHRDMRGGLTALHM--------------------- 116
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNK---PKK 160
A E V L++ GADI + GLTAL + ++ P + G + K
Sbjct: 117 --AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174
Query: 161 IKFSSGCVF 169
I G VF
Sbjct: 175 INVLEGQVF 183
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 197 DGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFC-DMDVKNY 247
D L +A AD N QD G TPLHAA + QIL+ N D+D + +
Sbjct: 39 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 90
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 162 KFSSGCVFLAACASSDKEEVL-NLLKSGADINTANVDGLTALH---------------QA 205
+ G L A E +L +L+ S AD+N + G +ALH +
Sbjct: 88 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYV 248
GA+ + Q+ TPL AA E ++L+++F + D+ +++
Sbjct: 148 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 190
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 71/198 (35%), Gaps = 45/198 (22%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
AC V LLK GA +N D T L AC S
Sbjct: 99 ACLGGHLSCVKILLKHGAQVNGVTADWHTPL-----------------------FNACVS 135
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESE-TNRQPSEMGNKPKKIKFSSGCV 168
+ V LL+ GA + + D + +H+ R E N + GN KI +
Sbjct: 136 GSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 194
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQ 228
+LA C + + V LL+SGAD+N G D +PLHA A
Sbjct: 195 YLA-CENQQRACVKKLLESGADVNQGK----------GQD---------SPLHAVVRTAS 234
Query: 229 REACQILVENFCDMDVKN 246
E +L++ D KN
Sbjct: 235 EELACLLMDFGADTQAKN 252
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 33 GNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSAS 88
GN KI ++LA C + + V LL+SGAD+N + LH V ++AS
Sbjct: 181 GNIDHKISHLGTPLYLA-CENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTAS 234
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Query: 179 EEVLNLLKSGADINTANVDGLTAL---------------HQAGADLNFQDY-DGWTPLHA 222
E+ L+ L D++ + +G TAL +AGADL+ +D G T LH
Sbjct: 58 EQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117
Query: 223 AAHWAQREACQILVENFCDMDVKN 246
AA + + E + LVE D++V++
Sbjct: 118 AAGYVRPEVVEALVELGADIEVED 141
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 113 EEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAA 172
E+ L+ L D++ + +G TAL + + R +E G G L
Sbjct: 58 EQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117
Query: 173 CASSDKEEVLN-LLKSGADINTANVDGLTALHQA 205
A + EV+ L++ GADI + GLTAL A
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 14/127 (11%)
Query: 57 EEVLNLLKSGADINTANVDGLTALHQVSKSAST----------LPLHSLNCGPGCVFLAA 106
E+ L+ L D++ + +G TAL V+ S L + G L
Sbjct: 58 EQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117
Query: 107 CASSDKEEVLN-LLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNK---PKKIK 162
A + EV+ L++ GADI + GLTAL + ++ P + G + K I
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN 177
Query: 163 FSSGCVF 169
G VF
Sbjct: 178 VLEGQVF 184
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALH---------------QAGADLNFQDYDG 216
AC V L+ GA IN N T LH Q AD+N + G
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105
Query: 217 WTPLHAAAHWAQREACQILVEN 238
PLH A W Q + + LV N
Sbjct: 106 NVPLHYACFWGQDQVAEDLVAN 127
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 190 DINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQI 234
D+N + G + LH A GA +N + TPLH AA R+ Q
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 235 LVENFCDMDVKN 246
L++ D++ N
Sbjct: 91 LLQYKADINAVN 102
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 68 DINTANVDGLTALHQVSKSASTLPLHSL----------NCGPGCVFLAACASSDKEEVLN 117
D+N + G + LH + + + L N G A + ++ V
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 118 LLKSGADINTANVDGLTALHQLKRWEESET 147
LL+ ADIN N G LH W + +
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQV 120
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALH---------------QAGADLNFQDYDG 216
AC V L+ GA IN N T LH Q AD+N + G
Sbjct: 41 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 100
Query: 217 WTPLHAAAHWAQREACQILVEN 238
PLH A W Q + + LV N
Sbjct: 101 NVPLHYACFWGQDQVAEDLVAN 122
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 190 DINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQI 234
D+N + G + LH A GA +N + TPLH AA R+ Q
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 235 LVENFCDMDVKN 246
L++ D++ N
Sbjct: 86 LLQYKADINAVN 97
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 68 DINTANVDGLTALHQVSKSASTLPLHSL----------NCGPGCVFLAACASSDKEEVLN 117
D+N + G + LH + + + L N G A + ++ V
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 118 LLKSGADINTANVDGLTALHQLKRWEESET 147
LL+ ADIN N G LH W + +
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQV 115
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
GAD+ +D +G TPLH AA E ++L+E D++ ++ T
Sbjct: 29 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKT 74
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---------------QAGADLN 210
G L A + +EV L+ +GAD+ + +G T LH +AGAD+N
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 211 FQDYDGWTPLHAAAHWAQREACQIL 235
QD G T + + +IL
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GA N QD G +P+H AA + ++LVE+ D++V +
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 182 LNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAA 223
L LLK GA N + G + +H A GAD+N D G P+H A
Sbjct: 52 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GA N QD G +P+H AA + ++LVE+ D++V +
Sbjct: 64 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 104
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 182 LNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAA 223
L LLK GA N + G + +H A GAD+N D G P+H A
Sbjct: 58 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 114
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
GAD+ +D +G TPLH AA E ++L+E D+ ++ T
Sbjct: 47 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 162 KFSSGCVFLAACASSDKEEVL-NLLKSGADINTANVDGLTALH---------------QA 205
+ G L A E +L +L+ S AD+N + G +ALH +
Sbjct: 11 RMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 70
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYV 248
GA+ + Q+ TPL AA E ++L+++F + D+ +++
Sbjct: 71 GANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHM 113
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 183 NLLKSGADINTANVDGLTALH---------------QAGADLNFQDYDGWTPLHAAAHWA 227
+L+ S AD+N + G +ALH + GA+ + Q+ TPL AA
Sbjct: 107 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREG 166
Query: 228 QREACQILVENFCDMDVKNYV 248
E ++L+++F + D+ +++
Sbjct: 167 SYETAKVLLDHFANRDITDHM 187
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 197 DGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFC-DMDVKNY 247
D L +A AD QD G TPLHAA + QIL+ N D+D + +
Sbjct: 36 DAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMH 87
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 184 LLKSGADINTANVDGLTALH---------------QAGADLNFQDYDGWTPLHAAAHWAQ 228
LL G+++NT + G T L + GA++N ++ +G TPL A+ + +
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 229 REACQILVENFCDMDVKN 246
E + L+E D+ ++
Sbjct: 147 SEIVKKLLELGADISARD 164
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%)
Query: 118 LLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSD 177
LL G+++NT + G T L + SE + E G + A
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 178 KEEVLNLLKSGADINTANVDGLTA 201
E V LL+ GADI+ ++ GLTA
Sbjct: 147 SEIVKKLLELGADISARDLTGLTA 170
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 62 LLKSGADINTANVDGLTAL-----HQVSKSASTLPLHSLNCGPGCV-----FLAACASSD 111
LL G+++NT + G T L S+ + L H N + + A
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 112 KEEVLNLLKSGADINTANVDGLTA 135
E V LL+ GADI+ ++ GLTA
Sbjct: 147 SEIVKKLLELGADISARDLTGLTA 170
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
F+ A + D +EV + + G D+N G LH A GAD+N D
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
TPL +A + ++L+ D VK
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
F+ A + D +EV + + G D+N G LH A GAD+N D
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
TPL +A + ++L+ D VK
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 98
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMD 243
GA N QD G +P+H AA + ++LVE+ D++
Sbjct: 66 GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 103
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 182 LNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAA 223
L LLK GA N + G + +H A GAD+N D G P+H A
Sbjct: 60 LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 116
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMD 243
GA N QD G +P+H AA + ++LVE+ D++
Sbjct: 64 GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 182 LNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAA 223
L LLK GA N + G + +H A GAD+N D G P+H A
Sbjct: 58 LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 114
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 125 INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNL 184
+N + G T L + E ET R E G P + A + V L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 185 LKSGADINTANVDGLT---------------ALHQAGADLNFQDYDGWTPLHAAAHWAQR 229
L+ DIN + +G T AL GADL + G+TP+ A R
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 230 EACQILVENFCDMDVKNYV 248
+ Q++ + + N V
Sbjct: 149 KVQQVIENHILKLFQSNLV 167
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 125 INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNL 184
+N + G T L + E ET R E G P + A + V L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 185 LKSGADINTANVDGLT---------------ALHQAGADLNFQDYDGWTPLHAAAHWAQR 229
L+ DIN + +G T AL GADL + G+TP+ A R
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 230 EACQILVENFCDMDVKNYV 248
+ Q++ + + N V
Sbjct: 149 KVQQVIENHILKLFQSNLV 167
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
LL++GA++N A+ G LH A GADL +D +G PL A A
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 229 REACQIL 235
+ +L
Sbjct: 314 ADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
LL++GA++N A+ G LH A GADL +D +G PL A A
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 229 REACQIL 235
+ +L
Sbjct: 314 ADIVTLL 320
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 144 ESETNRQPSEMGNKPKKI-KFSSGCVFLAACASSDKEEVLNLLKSGADINTAN------- 195
+ ET RQ E G P + +F + + S+ E+L L GA+ N A+
Sbjct: 24 QVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELL--LLHGAEPNCADPATLTRP 81
Query: 196 ---------VDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQIL 235
+D L LH+AGA L+ D G P+ A R+ + L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
LL++GA++N A+ G LH A GADL +D +G PL A A
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 229 REACQIL 235
+ +L
Sbjct: 314 ADIVTLL 320
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 105 AACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFS 164
+A A D E++ +LL++ ++N N G TAL Q+ + E R+ G P +K
Sbjct: 11 SAAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPD-LKDR 68
Query: 165 SGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAA 224
+G + A + + +D L L + AD+N +D +G PLH AA
Sbjct: 69 TGFAVIHDAARAGQ-----------------LDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 225 HWAQREACQILVEN 238
+ LV++
Sbjct: 112 KEGHLRVVEFLVKH 125
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQILVENF 239
+N+QD GWTPL A +A +LVE +
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQILVENF 239
+N+QD GWTPL A +A +LVE +
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 196 VDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
+D L L + AD+N +D +G PLH AA + LV++
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 209 LNFQDYDGWTPLHAAAHWAQREACQILVENF 239
+N+QD GWTPL A +A +LVE +
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 196 VDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
+D L L + AD+N +D +G PLH AA + LV++
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 196 VDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
+D L L + AD+N +D +G PLH AA + LV++
Sbjct: 83 LDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GA+ + +D G+ +H AA + Q L+EN D+++++
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIED 100
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 196 VDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
+D L L + AD+N +D +G PLH AA + LV++
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 207 ADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
A LNFQ+ TPLH A Q E + L+ CD +++++
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF 73
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 207 ADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
A LNFQ+ TPLH A Q E + L+ CD +++++
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF 76
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 100 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMG-NKP 158
G L A + +EV L+ +GA T + G + LH ++ T G ++
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 159 KKIKFSSGCVFLAAC-ASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
+ K + +AA ++ EVL LK GAD+N ++ +TALH A
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVL--LKHGADVNAKDMLKMTALHWA 107
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 51/154 (33%)
Query: 99 PGCVFLAACASSDK-EEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNK 157
P +LA A+ + EEV LL++GA+ N P+ G +
Sbjct: 11 PSADWLATAAARGRVEEVRALLEAGANPNA-----------------------PNSYGRR 47
Query: 158 PKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTAN----------------VDGLTA 201
P ++ S+ E+L L GA+ N A+ +D L
Sbjct: 48 PIQVMM---------MGSARVAELL--LLHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96
Query: 202 LHQAGADLNFQDYDGWTPLHAAAHWAQREACQIL 235
LH+AGA L+ +D G P+ A R+ + L
Sbjct: 97 LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 197 DGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCD 241
D + L G D+N D++G TPL A H + ++L+E+ D
Sbjct: 83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 197 DGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCD 241
D + L G D+N D++G TPL A H + ++L+E+ D
Sbjct: 99 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 197 DGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCD 241
D + L G D+N D++G TPL A H + ++L+E+ D
Sbjct: 81 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 21/84 (25%)
Query: 181 VLNLLKSGADINTANVDGLTALHQAGADLNFQ------------------DYDGWTPLHA 222
V L K+GAD N +ALHQA A+ +F D +G T L
Sbjct: 182 VAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXI 241
Query: 223 AAHWAQRE---ACQILVENFCDMD 243
AH R+ + ++LVE +D
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVD 265
>pdb|2IW4|A Chain A, Crystal Structure Of Basillus Subtilis Family Ii Inorganic
Pyrophosphatase Mutant, H98q, In Complex With Pnp
pdb|2IW4|B Chain B, Crystal Structure Of Basillus Subtilis Family Ii Inorganic
Pyrophosphatase Mutant, H98q, In Complex With Pnp
Length = 309
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 48 LAACASSDKEEV-LNLLKSGADINTANVDGLTAL 80
LA A D EE LN+LK+GAD++ V+ L +L
Sbjct: 169 LAEIAGVDAEEYGLNMLKAGADLSKKTVEELISL 202
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 104 LAACASSDKEEV-LNLLKSGADINTANVDGLTAL 136
LA A D EE LN+LK+GAD++ V+ L +L
Sbjct: 169 LAEIAGVDAEEYGLNMLKAGADLSKKTVEELISL 202
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 170 LAACASSDKEEV-LNLLKSGADINTANVDGLTAL 202
LA A D EE LN+LK+GAD++ V+ L +L
Sbjct: 169 LAEIAGVDAEEYGLNMLKAGADLSKKTVEELISL 202
>pdb|1WPM|A Chain A, Structure Of Bacillus Subtilis Inorganic Pyrophosphatase
pdb|1WPM|B Chain B, Structure Of Bacillus Subtilis Inorganic Pyrophosphatase
pdb|2HAW|A Chain A, Crystal Structure Of Family Ii Inorganic Pyrophosphatase
In Complex With Pnp
pdb|2HAW|B Chain B, Crystal Structure Of Family Ii Inorganic Pyrophosphatase
In Complex With Pnp
Length = 309
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 48 LAACASSDKEEV-LNLLKSGADINTANVDGLTAL 80
LA A D EE LN+LK+GAD++ V+ L +L
Sbjct: 169 LAEIAGVDAEEYGLNMLKAGADLSKKTVEELISL 202
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 104 LAACASSDKEEV-LNLLKSGADINTANVDGLTAL 136
LA A D EE LN+LK+GAD++ V+ L +L
Sbjct: 169 LAEIAGVDAEEYGLNMLKAGADLSKKTVEELISL 202
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 170 LAACASSDKEEV-LNLLKSGADINTANVDGLTAL 202
LA A D EE LN+LK+GAD++ V+ L +L
Sbjct: 169 LAEIAGVDAEEYGLNMLKAGADLSKKTVEELISL 202
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 196 VDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQIL 235
+D L LH+AGA L+ +D G P+ A R+ + L
Sbjct: 91 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|1DC1|A Chain A, Restriction Enzyme BsobiDNA COMPLEX STRUCTURE:
Encirclement Of The Dna And Histidine-Catalyzed
Hydrolysis Within A Canonical Restriction Enzyme Fold
pdb|1DC1|B Chain B, Restriction Enzyme BsobiDNA COMPLEX STRUCTURE:
Encirclement Of The Dna And Histidine-Catalyzed
Hydrolysis Within A Canonical Restriction Enzyme Fold
Length = 323
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 99 PGCVFL-AACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRW 142
P +F+ AA S EE+ + L+SG+ N+AN+ + L RW
Sbjct: 275 PKTIFIGAAIEHSMAEEIWDQLQSGSLTNSANLTKTEQVGSLCRW 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.126 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,121,883
Number of Sequences: 62578
Number of extensions: 278012
Number of successful extensions: 1379
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 398
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)