RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9957
(251 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 74.7 bits (184), Expect = 3e-17
Identities = 50/182 (27%), Positives = 66/182 (36%), Gaps = 71/182 (39%)
Query: 70 NTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTAN 129
N + DG T LH A ++ E V LL++GAD+N +
Sbjct: 1 NARDEDGRTPLH-----------------------LAASNGHLEVVKLLLENGADVNAKD 37
Query: 130 VDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGA 189
DG T LH A + E V LL+ GA
Sbjct: 38 NDGRTPLH---------------------------------LAAKNGHLEIVKLLLEKGA 64
Query: 190 DINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQI 234
D+N + DG T LH A GAD+N +D DG TPLH AA E ++
Sbjct: 65 DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124
Query: 235 LV 236
L+
Sbjct: 125 LL 126
Score = 72.4 bits (178), Expect = 3e-16
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A ++ E V LL++GAD+N + DG T LH A GAD+N +D
Sbjct: 11 LHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD 70
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
DG TPLH AA + ++L+++ D++ ++
Sbjct: 71 KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDK 104
Score = 52.8 bits (127), Expect = 5e-09
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 15/71 (21%)
Query: 192 NTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILV 236
N + DG T LH A GAD+N +D DG TPLH AA E ++L+
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 237 ENFCDMDVKNY 247
E D++ ++
Sbjct: 61 EKGADVNARDK 71
Score = 48.1 bits (115), Expect = 2e-07
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 25/89 (28%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + E V LL+ GAD+N + DG T LH A
Sbjct: 47 AAKNGHLEIVKLLLEKGADVNARDKDGNTPLH------------------------LAAR 82
Query: 110 SDKEEVLN-LLKSGADINTANVDGLTALH 137
+ +V+ LLK GAD+N + DG T LH
Sbjct: 83 NGNLDVVKLLLKHGADVNARDKDGRTPLH 111
Score = 35.1 bits (81), Expect = 0.008
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 48 LAACASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKS 86
L A + +V+ LLK GAD+N + DG T LH +K+
Sbjct: 77 LHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 66.2 bits (162), Expect = 2e-12
Identities = 54/235 (22%), Positives = 86/235 (36%), Gaps = 65/235 (27%)
Query: 45 CVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSL--------- 95
++L + K+ V LL++GAD+N G T LH +A+TL + L
Sbjct: 52 HLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVN 111
Query: 96 -NCGPGCVFLAACASSD--KEEVLN-LLKSGADINTANVDGLTALHQLKRWEESETNRQP 151
G L S +V+ LL+ GAD+N ++ G+T L L
Sbjct: 112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL------------ 159
Query: 152 SEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLL-KSGADINTANVDGLTALHQ------ 204
+K + V E+L LL +GAD+ + + LH
Sbjct: 160 ---------LKSRNANV-----------ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFK 199
Query: 205 -----------AGADLNFQDYDGWTPLHAAAHWAQREACQI--LVENFCDMDVKN 246
AG D D G TPLH+ A + + + L+ ++ +N
Sbjct: 200 PRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN 254
Score = 62.0 bits (151), Expect = 4e-11
Identities = 48/194 (24%), Positives = 69/194 (35%), Gaps = 71/194 (36%)
Query: 47 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
+L ++ EEV LL +GAD+N G T LH ++L
Sbjct: 18 YLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLH--------------------LYLHY 57
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSG 166
+ K+ V LL++GAD+N G T LH
Sbjct: 58 SSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLY------------------------- 92
Query: 167 CVFLAACASSDKEEVLNLL-KSGADINTANVDGLTALH-----------------QAGAD 208
++ +V+ LL K+GAD+N + G T LH + GAD
Sbjct: 93 --------NATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD 144
Query: 209 LNFQDYDGWTPLHA 222
+N D G TPL
Sbjct: 145 VNALDLYGMTPLAV 158
Score = 59.3 bits (144), Expect = 3e-10
Identities = 52/204 (25%), Positives = 76/204 (37%), Gaps = 38/204 (18%)
Query: 53 SSDKEEVLNLL-KSGADINTANVDGLTALHQVSKSASTLP---------------LHSLN 96
++ +V+ LL K+GAD+N + G T LH + P L
Sbjct: 93 NATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYG 152
Query: 97 CGPGCVFLAACASSDKEEVLNLL-KSGADINTANVDGLTALHQLKRW--EESETNRQPSE 153
P V L + ++ E+L LL +GAD+ + + LH + + R+
Sbjct: 153 MTPLAVLLKSRNANV--ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIR 210
Query: 154 MGNKPKKIKFSSGCVF--LAACASSDKEEVLNLLKSGADINTANVDGLTALH-------- 203
G P +A +S + VL LL +G IN N G T LH
Sbjct: 211 AGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNP 270
Query: 204 -------QAGADLNFQDYDGWTPL 220
GAD+N DG TPL
Sbjct: 271 RACRRLIALGADINAVSSDGNTPL 294
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 58.0 bits (141), Expect = 3e-11
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 169 FLAACASSDKEEVLNLLKSGADINTA-------------NVDGLTALHQAGADLNFQDYD 215
A + + E V LL+ GAD+N N++ + L + GAD+N +D D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60
Query: 216 GWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G T LH AA E ++L+E+ D+++K+
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 43.0 bits (102), Expect = 9e-06
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 195 NVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
N++ + L + GAD+N D D T LH AA E ++L+E+ D++ K+
Sbjct: 9 NLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDK 59
Score = 38.4 bits (90), Expect = 3e-04
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 25/91 (27%)
Query: 47 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
A + + E V LL+ GAD+N + + LH A
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD--------------TDTALH-----------LA 35
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALH 137
+ + E V LL+ GAD+N + DG TALH
Sbjct: 36 ARNGNLEIVKLLLEHGADVNAKDKDGNTALH 66
Score = 36.1 bits (84), Expect = 0.002
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 26/84 (30%)
Query: 48 LAACASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
L A + E++ LL+ GAD+N + DG TALH
Sbjct: 32 LHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALH------------------------L 67
Query: 107 CASSDKEEVLN-LLKSGADINTAN 129
A + E++ LL+ GADIN +
Sbjct: 68 AARNGNLEIVKLLLEHGADINLKD 91
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 53.9 bits (130), Expect = 2e-08
Identities = 55/229 (24%), Positives = 79/229 (34%), Gaps = 68/229 (29%)
Query: 38 KIKFSSGCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSASTLPLHSLN 96
K ++LA + +V+ LL +GADIN++ + T LH +S ++L
Sbjct: 31 SYKKPVLPLYLAK--EARNIDVVKILLDNGADINSSTKNNSTPLHYLS-----NIKYNLT 83
Query: 97 CGP-------------------GCVFLAACASSDKEE---VLNLLKSGADINTANVDGLT 134
G L S V LL +GA++N N DG
Sbjct: 84 DVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGEN 143
Query: 135 ALHQ-LKRWEESETNRQPSEMGNKPKK--IKFSSGCVFLAACASSDKEEVLN-LLKSGAD 190
LH L+ NK +K + + + +N LL G
Sbjct: 144 LLHLYLE--------------SNKIDLKILKL-----LIDKGVDINAKNRVNYLLSYGVP 184
Query: 191 INTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAA 224
IN +V G T LH A GA+ N + G TPLH A
Sbjct: 185 INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAI 233
Score = 42.3 bits (100), Expect = 1e-04
Identities = 39/155 (25%), Positives = 49/155 (31%), Gaps = 59/155 (38%)
Query: 56 KEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEV 115
K V LL G IN +V G T PLH A +++ E V
Sbjct: 172 KNRVNYLLSYGVPINIKDVYGFT------------PLHY-----------AVYNNNPEFV 208
Query: 116 LNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACAS 175
LL GA+ N N G T LH A +
Sbjct: 209 KYLLDLGANPNLVNKYGDTPLHI---------------------------------AILN 235
Query: 176 SDKEEVLNLLKSGADINTANVDGLTALHQAGADLN 210
++KE LL +G I T T L+ DLN
Sbjct: 236 NNKEIFKLLLNNGPSIKTIIE---TLLYFKDKDLN 267
Score = 38.9 bits (91), Expect = 0.002
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 25/111 (22%)
Query: 160 KIKFSSGCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALH--------------- 203
K ++LA + +V+ LL +GADIN++ + T LH
Sbjct: 31 SYKKPVLPLYLAK--EARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEI 88
Query: 204 -----QAGADLNFQDYDGWTPLHAAA--HWAQREACQILVENFCDMDVKNY 247
+ GA++N D +G TPL A + L++N ++++KN
Sbjct: 89 VKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS 139
Score = 35.4 bits (82), Expect = 0.021
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 24/77 (31%)
Query: 52 ASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASS 110
++ E + LL GA+ N N G T LH A ++
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHI-----------------------AILNN 236
Query: 111 DKEEVLNLLKSGADINT 127
+KE LL +G I T
Sbjct: 237 NKEIFKLLLNNGPSIKT 253
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 50.4 bits (120), Expect = 3e-07
Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 28/189 (14%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCV------FLAACASSDKEEV 115
LL GAD+N +D L+ L S + + ++ + L A + D E
Sbjct: 197 LLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETS 256
Query: 116 LNLLKSGADINTANVDGLTALHQLKRWEESETNRQPS--EMGN--KPKKIKFSSGCVFLA 171
L L +G +N+ + T LH + S + P E G K IK + ++L
Sbjct: 257 LLLYDAGFSVNSIDDCKNTPLHHASQ-APSLSRLVPKLLERGADVNAKNIKGETP-LYLM 314
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA----------------GADLNFQDYD 215
A D E + L+ GAD+N A+ +T LHQA GA++N +DY
Sbjct: 315 AKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYC 374
Query: 216 GWTPLHAAA 224
TP+H AA
Sbjct: 375 DKTPIHYAA 383
Score = 44.7 bits (105), Expect = 3e-05
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 45/180 (25%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL+ GAD+N ++ +T +H ++ + +++NLL S
Sbjct: 164 LLEGGADVNAKDIYCITPIHYAAERGNA------------------------KMVNLLLS 199
Query: 122 -GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEE 180
GAD+N +D L+ L + +T + + + K S L A + D E
Sbjct: 200 YGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLS----LLKAIRNEDLET 255
Query: 181 VLNLLKSGADINTANVDGLTALHQA----------------GADLNFQDYDGWTPLHAAA 224
L L +G +N+ + T LH A GAD+N ++ G TPL+ A
Sbjct: 256 SLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMA 315
Score = 43.9 bits (103), Expect = 4e-05
Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 44/218 (20%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A+ A S V LL+ GAD+N N+ G T L+ ++K+
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGY-------------------- 319
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQ---LKRWEESETNRQPSEMGNKPKKIKFSS 165
D E + L+ GAD+N A+ +T LHQ L R ++ E+G +
Sbjct: 320 --DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLL--ELGANVNARDYCD 375
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA----------------GADL 209
A ++ + LL GADI + TALH A GA++
Sbjct: 376 KTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANV 435
Query: 210 NFQDYDGWTPLH-AAAHWAQREACQILVENFCDMDVKN 246
N ++ D TPLH A + + ++L++N D++ N
Sbjct: 436 NSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAIN 473
Score = 41.2 bits (96), Expect = 4e-04
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 23/161 (14%)
Query: 46 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLA 105
++L A D E + L+ GAD+N A+ +T LHQ ASTL
Sbjct: 311 LYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQ----ASTL--------------- 351
Query: 106 ACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSS 165
+K+ V+ LL+ GA++N + T +H + G + +
Sbjct: 352 ---DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKI 408
Query: 166 GCVF-LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
G A C ++ V L+ GA++N+ N D T LH A
Sbjct: 409 GTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA 449
Score = 31.6 bits (71), Expect = 0.45
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 22/83 (26%)
Query: 48 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAAC 107
A C ++ V L+ GA++N+ N D T LH K NC
Sbjct: 414 FALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKK---------NCKL-------- 456
Query: 108 ASSDKEEVLNLLKSGADINTANV 130
+ + LL +GAD+N N+
Sbjct: 457 -----DVIEMLLDNGADVNAINI 474
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 50.3 bits (120), Expect = 3e-07
Identities = 50/226 (22%), Positives = 78/226 (34%), Gaps = 78/226 (34%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDG----LTAL----HQVSK-------SASTLPLHS 94
A S D + V +K GADIN N LTA+ H + K S LP+
Sbjct: 42 AIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPC 101
Query: 95 LNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEM 154
+ K+ + +L G D+N + + T LH
Sbjct: 102 IE---------------KDMIKTILDCGIDVNIKDAELKTFLHY---------------- 130
Query: 155 GNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA--------- 205
A D E + L + GAD+N + +G +H A
Sbjct: 131 -----------------AIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDII 173
Query: 206 ------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVK 245
GA N +D +G +PLH AA + ++L+++ + K
Sbjct: 174 KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219
Score = 46.9 bits (111), Expect = 4e-06
Identities = 45/206 (21%), Positives = 73/206 (35%), Gaps = 37/206 (17%)
Query: 55 DKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEE 114
+K+ + +L G D+N + + T LH K D E
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIK-----------------------KGDLES 139
Query: 115 VLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACA 174
+ L + GAD+N + +G +H + + + E G + A
Sbjct: 140 IKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE 199
Query: 175 SSDKEEVLNLLKSGADINTANVDGLTALHQA-------------GADLNFQDYDGWTPLH 221
D + L+ G I +G T LH A A +N QD DG TPLH
Sbjct: 200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLH 259
Query: 222 AAAHW-AQREACQILVENFCDMDVKN 246
A + + IL+ + D+ +K+
Sbjct: 260 HAINPPCDIDIIDILLYHKADISIKD 285
Score = 45.3 bits (107), Expect = 1e-05
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 177 DKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLH 221
+K+ + +L G D+N + + T LH A GAD+N +D +G P+H
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIH 162
Query: 222 AAAHWAQREACQILVENFCDMDVKNYVVST 251
A + ++L+E +VK+ +
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGES 192
Score = 39.2 bits (91), Expect = 0.001
Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 41/198 (20%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A D E + L + GAD+N + +G +H K
Sbjct: 131 AIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFF-------------------- 170
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ + LL+ GA N + +G + LH + + + + GN K +G
Sbjct: 171 ---DIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH-IMNKCKNGFTP 226
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA----------------GADLNFQD 213
L ++ + LL + A IN ++DG T LH A AD++ +D
Sbjct: 227 LHNAIIHNR-SAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKD 285
Query: 214 YDGWTPLHAAAHWAQREA 231
G P+ A + ++
Sbjct: 286 NKGENPIDTAFKYINKDP 303
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 47.1 bits (111), Expect = 2e-06
Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 24/169 (14%)
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSG 166
C L LL S N ++ L S + + ++ + G
Sbjct: 14 CFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDG 73
Query: 167 C-VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------------- 205
+A + D + V LL SGAD+N + DG T LH A
Sbjct: 74 RLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133
Query: 206 ---GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYVVST 251
N +D DG TPLH AA + ++L+E D + +N T
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVT 182
Score = 44.4 bits (104), Expect = 2e-05
Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 54/162 (33%)
Query: 47 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
+A + D + V LL SGAD+N + DG T LH + + + +
Sbjct: 77 LHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNI------------ 124
Query: 107 CASSDKEEVLNLLKSGA---DINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
E LL++GA N + DG T LH
Sbjct: 125 ------EVAKLLLEAGADLDVNNLRDEDGNTPLHW------------------------- 153
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
A + D + V LL++GAD N+ N G+TAL A
Sbjct: 154 --------AALNGDADIVELLLEAGADPNSRNSYGVTALDPA 187
Score = 39.8 bits (92), Expect = 6e-04
Identities = 38/158 (24%), Positives = 53/158 (33%), Gaps = 50/158 (31%)
Query: 103 FLAACASSDKEEVLNLLKSGADINTANVDGLTALH------------------QLKRWEE 144
+A + D + V LL SGAD+N + DG T LH L+ +
Sbjct: 77 LHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD 136
Query: 145 SETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQ 204
+ N E GN P A + D + V LL++GAD N+ N G
Sbjct: 137 LDVNNLRDEDGNTP----------LHWAALNGDADIVELLLEAGADPNSRNSYG------ 180
Query: 205 AGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDM 242
T L A + LV+ D
Sbjct: 181 ------------VTAL----DPAAKNGRIELVKLLLDK 202
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 40.7 bits (96), Expect = 2e-05
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 195 NVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILV 236
++ + L + G D+N D DG T LH AA E ++L+
Sbjct: 13 RLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 36.4 bits (85), Expect = 7e-04
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 168 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
A S E V LL+ G DIN + DG TALH A
Sbjct: 4 ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41
Score = 34.9 bits (81), Expect = 0.002
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 46 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALH 81
A S E V LL+ G DIN + DG TALH
Sbjct: 4 ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALH 39
Score = 34.9 bits (81), Expect = 0.002
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 102 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
A S E V LL+ G DIN + DG TALH
Sbjct: 4 ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALH 39
Score = 30.3 bits (69), Expect = 0.13
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 216 GWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
G T LH AA + E + L+E D++ +
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDE 32
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 43.3 bits (102), Expect = 6e-05
Identities = 51/216 (23%), Positives = 77/216 (35%), Gaps = 63/216 (29%)
Query: 62 LLKSGADINTANVDGL-TALHQVSKSAST----------LPLHSLNCGPGCVFLAACASS 110
LL GADIN + TALH +++ ++ + A
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHY 212
Query: 111 DKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFL 170
+K V LL++GA + + G T LH S G
Sbjct: 213 NKPIVHILLENGASTDARDKCGNTPLH-------------------------ISVGYCK- 246
Query: 171 AACASSDKEEVLNLLKSGADINT-ANVDGLTALH-------------QAGADLNFQDYDG 216
D + + LL+ G D+N + + GLTALH + GAD+N +
Sbjct: 247 ------DYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADINSLNSYK 300
Query: 217 WTPLHAAA-HWAQREACQILVENFC-----DMDVKN 246
TPL +A + +IL+ N C D+KN
Sbjct: 301 LTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKN 336
Score = 35.2 bits (81), Expect = 0.023
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 118 LLKSGADINTANVDGL-TALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASS 176
LL GADIN + TALH ++ G ++ A
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHY 212
Query: 177 DKEEVLNLLKSGADINTANVDGLTALHQA----------------GADLNFQDY-DGWTP 219
+K V LL++GA + + G T LH + G D+N + Y G T
Sbjct: 213 NKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTA 272
Query: 220 LHAAAHWAQREACQILVENFCDMDVKNY 247
LH++ ++ ++L+E D++ N
Sbjct: 273 LHSSIKSERK--LKLLLEYGADINSLNS 298
Score = 31.8 bits (72), Expect = 0.30
Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVS---KSASTLPL-----HSLNCGPGC 101
A +K V LL++GA + + G T LH K L L +N
Sbjct: 208 AVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI 267
Query: 102 VFLAACASSDK-EEVLN-LLKSGADINTANVDGLTAL 136
+ L A SS K E L LL+ GADIN+ N LT L
Sbjct: 268 LGLTALHSSIKSERKLKLLLEYGADINSLNSYKLTPL 304
Score = 31.0 bits (70), Expect = 0.66
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 57 EEVLNLL-KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEV 115
E L LL + GADIN+ N LT L K +N G + K ++
Sbjct: 280 ERKLKLLLEYGADINSLNSYKLTPLSSAVKQYL-----CINIGRILISNICLLKRIKPDI 334
Query: 116 LNLLKSGADINTANVDGLTALHQLKRWEESETNRQPS 152
N G N + L+Q+K E E NR S
Sbjct: 335 KNSE--GFIDNMDCITSNKRLNQIKDKCEDELNRLAS 369
Score = 31.0 bits (70), Expect = 0.68
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 191 INTANVDGLTALHQAGADLNFQDYDGWTPLH-AAAHWAQREACQILVENFCDMDVKNYV 248
+ N + L + GA + +D G TPLH + + + ++L+E+ D++ K+Y+
Sbjct: 209 VKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI 267
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
DG TPLH AA E ++L+E D++ ++
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 41.0 bits (96), Expect = 3e-04
Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 174 ASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWT 218
AS D LL GAD N + DG T LH A GAD D DG T
Sbjct: 91 ASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKT 150
Query: 219 PLHAAAHWAQREACQIL 235
PL A RE Q+L
Sbjct: 151 PLELAEENGFREVVQLL 167
Score = 34.1 bits (78), Expect = 0.062
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 198 GLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVE 237
G L GAD N +DYDG TPLH A + ++L+E
Sbjct: 97 GARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLE 136
Score = 30.6 bits (69), Expect = 0.81
Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 23/85 (27%)
Query: 52 ASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSD 111
AS D LL GAD N + DG T LH ACA+
Sbjct: 91 ASGDAVGARILLTGGADPNCRDYDGRTPLH-----------------------IACANGH 127
Query: 112 KEEVLNLLKSGADINTANVDGLTAL 136
+ V LL+ GAD + DG T L
Sbjct: 128 VQVVRVLLEFGADPTLLDKDGKTPL 152
Score = 28.7 bits (64), Expect = 3.6
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 108 ASSDKEEVLNLLKSGADINTANVDGLTALH 137
AS D LL GAD N + DG T LH
Sbjct: 91 ASGDAVGARILLTGGADPNCRDYDGRTPLH 120
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 34.6 bits (80), Expect = 0.003
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 202 LHQAG-ADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
L + G DLN D +G TPLH AA + E Q L++ D+++++
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRD 46
Score = 31.9 bits (73), Expect = 0.027
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
A E V LLK G D+N + DGLTAL A
Sbjct: 23 AAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 31.2 bits (71), Expect = 0.056
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 92 LHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
L++ + A E V LLK G D+N + DGLTAL
Sbjct: 9 LNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54
Score = 30.8 bits (70), Expect = 0.089
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALH 81
A E V LLK G D+N + DGLTAL
Sbjct: 23 AAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54
Score = 28.9 bits (65), Expect = 0.41
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 15/50 (30%)
Query: 189 ADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAA 223
D+N + +G T LH A G DLN +D DG T L A
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 33.8 bits (78), Expect = 0.003
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 215 DGWTPLHAAAHWAQREACQILVENFCD 241
DG TPLH AA E ++L+E+ D
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGAD 27
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 36.4 bits (84), Expect = 0.011
Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 45/187 (24%)
Query: 61 NLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLK 120
LLK+ D + + G T LH A + ++ VL LLK
Sbjct: 543 ELLKAKLDPDIGDSKGRTPLH-----------------------IAASKGYEDCVLVLLK 579
Query: 121 SGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACAS-SDKE 179
+++ + +G TAL W + K KI F L AS SD
Sbjct: 580 HACNVHIRDANGNTAL-----WNA---------ISAKHHKI-FR----ILYHFASISDPH 620
Query: 180 EVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENF 239
+LL + A N ++ + L + G +++ +D+ G T L A + ++L+ N
Sbjct: 621 AAGDLLCTAAKRN--DLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNG 678
Query: 240 CDMDVKN 246
D+D N
Sbjct: 679 ADVDKAN 685
Score = 31.8 bits (72), Expect = 0.41
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 183 NLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDM 242
NLL + T N L L +A D + D G TPLH AA + +L+++ C++
Sbjct: 528 NLLTVAS---TGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV 584
Query: 243 DVKN 246
+++
Sbjct: 585 HIRD 588
Score = 27.5 bits (61), Expect = 7.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 42 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTAL 80
++G + A +D + LLK G ++++ + G TAL
Sbjct: 621 AAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATAL 659
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 33.8 bits (77), Expect = 0.078
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
L+ GAD + N D + LH A A L+ +D G TPL A
Sbjct: 121 LIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD 180
Query: 229 REACQILVENFCDMD 243
C++L+++ ++D
Sbjct: 181 IAICKMLLDSGANID 195
Score = 28.0 bits (62), Expect = 5.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 191 INTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVE 237
I +D L G + NF+ YDG +P+ A + EA ++L++
Sbjct: 10 ILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK 56
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 29.9 bits (68), Expect = 0.084
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDV 244
DG TPLH AA E ++L++ D++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 32.9 bits (75), Expect = 0.095
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 113 EEVLNLL-KSGADINTANVDGLTALHQLKRWEES-----ETNRQPSEMGNKPKKIKFSSG 166
E+L +L SG+ I + DG LH + + + + G F +
Sbjct: 103 PEILKILIDSGSSITEEDEDGKNLLH---MYMCNFNVRINVIKLLIDSGVSFLNKDFDNN 159
Query: 167 CVFLAACASSDKEEVLNLLKS-GADINTANVDGLT 200
+ + +++ + L S G DIN N G
Sbjct: 160 NILYSYILFHSDKKIFDFLTSLGIDINETNKSGYN 194
Score = 27.5 bits (61), Expect = 5.1
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 19/64 (29%)
Query: 177 DKEEVLNLLKSGADIN-TANVDGLTALH------------------QAGADLNFQDYDGW 217
+ E + L+++GAD+N + L+ALH +G+ + +D DG
Sbjct: 65 NVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGK 124
Query: 218 TPLH 221
LH
Sbjct: 125 NLLH 128
Score = 27.5 bits (61), Expect = 6.8
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 57 EEVLNLL-KSGADINTANVDGLTALH 81
E+L +L SG+ I + DG LH
Sbjct: 103 PEILKILIDSGSSITEEDEDGKNLLH 128
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 32.9 bits (75), Expect = 0.14
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 51/146 (34%)
Query: 59 VLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNL 118
V L+++GADIN N DG T P L+ ++ E +L +
Sbjct: 92 VKILIENGADINKKNSDGET--------------------PLYCLLSNGYINNLEILLFM 131
Query: 119 LKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDK 178
+++GAD + DG T L V+L + D
Sbjct: 132 IENGADTTLLDKDGFTMLQ------------------------------VYLQSNHHIDI 161
Query: 179 EEVLNLLKSGADINT-ANVDGLTALH 203
E + LL+ G DINT N + LH
Sbjct: 162 EIIKLLLEKGVDINTHNNKEKYDTLH 187
Score = 29.4 bits (66), Expect = 2.1
Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 46/183 (25%)
Query: 54 SDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKE 113
++ E +L ++++GAD + DG T L V+L + D E
Sbjct: 123 NNLEILLFMIENGADTTLLDKDGFTMLQ--------------------VYLQSNHHIDIE 162
Query: 114 EVLNLLKSGADINT-ANVDGLTALHQLKRWEESETNRQPSEM----------GNKPKKIK 162
+ LL+ G DINT N + LH ++ + ++ NK K K
Sbjct: 163 IIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKK 222
Query: 163 FSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---------------QAGA 207
F L K+ +L+ + S DIN + G L+ Q G
Sbjct: 223 FMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGG 282
Query: 208 DLN 210
D+N
Sbjct: 283 DIN 285
>gnl|CDD|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction
mechanisms].
Length = 130
Score = 31.4 bits (71), Expect = 0.17
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 42 SSGCVFLAACASSDKEEVLNLLKSGA-------DINTANVDGLTALHQVSKSASTLPLHS 94
G + A +EE L LL+ DIN +DG+ L ++ +P+
Sbjct: 27 DLGYEVVEAA--DGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRARGPNIPV-- 82
Query: 95 LNCGPGCVFLAACASSDKEEVLNLLKSGAD 124
+ L A +D+ + L +GAD
Sbjct: 83 -------ILLT--AYADEADRERALAAGAD 103
>gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the
sensor partner in a two-component systems; contains a
phosphoacceptor site that is phosphorylated by histidine
kinase homologs; usually found N-terminal to a DNA
binding effector domain; forms homodimers.
Length = 113
Score = 31.0 bits (71), Expect = 0.19
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 57 EEVLNLLKSGA------DINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASS 110
EE L LL DI +DGL L ++ K +P+ +FL A
Sbjct: 31 EEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPI---------IFLT--AHG 79
Query: 111 DKEEVLNLLKSGAD 124
D E+ + LK+GAD
Sbjct: 80 DDEDAVEALKAGAD 93
>gnl|CDD|200976 pfam00072, Response_reg, Response regulator receiver domain. This
domain receives the signal from the sensor partner in
bacterial two-component systems. It is usually found
N-terminal to a DNA binding effector domain.
Length = 111
Score = 29.5 bits (67), Expect = 0.63
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 54 SDKEEVLNLLKSGA------DINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAAC 107
D EE L LLK DI +DGL L ++ + T P + L
Sbjct: 29 DDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRPPTTP---------VIVLT-- 77
Query: 108 ASSDKEEVLNLLKSGAD 124
A D+E+ + LK+GA+
Sbjct: 78 AHGDEEDAVEALKAGAN 94
>gnl|CDD|225555 COG3010, NanE, Putative N-acetylmannosamine-6-phosphate epimerase
[Carbohydrate transport and metabolism].
Length = 229
Score = 29.2 bits (66), Expect = 1.8
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 18/66 (27%)
Query: 159 KKIKFSSGCVFLAACASSDKEEVLNLLKSGADI----------NTANVDG-----LTALH 203
+IK+ G + +A C++ EE LN K G DI T + L
Sbjct: 121 ARIKYP-GQLAMADCSTF--EEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLS 177
Query: 204 QAGADL 209
AG +
Sbjct: 178 DAGCRV 183
Score = 28.4 bits (64), Expect = 3.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 99 PGCVFLAACASSDKEEVLNLLKSGADI 125
PG + +A C++ EE LN K G DI
Sbjct: 126 PGQLAMADCSTF--EEGLNAHKLGFDI 150
Score = 28.0 bits (63), Expect = 3.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 37 KKIKFSSGCVFLAACASSDKEEVLNLLKSGADI 69
+IK+ G + +A C++ EE LN K G DI
Sbjct: 121 ARIKYP-GQLAMADCSTF--EEGLNAHKLGFDI 150
>gnl|CDD|223782 COG0710, AroD, 3-dehydroquinate dehydratase [Amino acid transport
and metabolism].
Length = 231
Score = 28.5 bits (64), Expect = 2.8
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 29/98 (29%)
Query: 112 KEEVLNLLKSGADINTANVDGLT--------ALHQLKRWEESE---TNRQPSEMGNKPKK 160
KE+ + ADI VD L A ++ + T R E G P
Sbjct: 17 KEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPG- 75
Query: 161 IKFSSGCVFLAACASSDKEEVLNLLKSGADINTAN-VD 197
+EE + LLK A++N + +D
Sbjct: 76 ----------------SEEEYIELLKKLAELNGPDYID 97
>gnl|CDD|182100 PRK09834, PRK09834, DNA-binding transcriptional activator MhpR;
Provisional.
Length = 263
Score = 28.4 bits (64), Expect = 2.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 42 SSGCVFLAACASSDKEEVLNLLKSGAD 68
++G +LA C ++E +L LL S
Sbjct: 142 AAGRAYLAFCPEEEREALLELLASRPG 168
Score = 28.4 bits (64), Expect = 2.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGAD 190
++G +LA C ++E +L LL S
Sbjct: 142 AAGRAYLAFCPEEEREALLELLASRPG 168
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 28.3 bits (64), Expect = 3.0
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 71 TANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLK 120
T NVDGL HQ + S + LH G +F C KE + L+
Sbjct: 85 TQNVDGL---HQRAGSPKVIELH------GSLFRVRCTKCGKEYPRDELQ 125
>gnl|CDD|131422 TIGR02369, trimeth_pyl, trimethylamine:corrinoid methyltransferase.
This model represents a distinct subfamily of
pfam06253. All members here are trimethylamine:corrinoid
methyltransferases that contain a critical pyrrolysine
residue incorporated during translation via a special
tRNA for a TAG (amber) codon. Known members so far are
from the genus Methanosarcina. It is one of a suite of
three non-homologous enzymes with a critical UAG-encoded
pyrrolysine residue in these species (along with
dimethylamine methyltransferase and monomethylamine
methyltransferase). It demethylates trimethylamine,
leaving dimethylamine, and methylates the prosthetic
group of its small cognate corrinoid protein, MttC. The
methyl group is then transferred by
methylcorrinoid:coenzyme M methyltransferase to coenzyme
M. Note that the pyrrolysine residue is variously
translated as K or X, or as a stop codon that truncates
the sequence.
Length = 489
Score = 28.5 bits (63), Expect = 3.9
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 187 SGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+G ++N +D L A+H A D+ ++ + EA QI EN C++D K
Sbjct: 12 NGVELNLFTIDELKAIHYATMDV---------LMNPGVQVSDPEARQIFKENGCEVDEKT 62
Query: 247 YVV 249
VV
Sbjct: 63 NVV 65
>gnl|CDD|211336 cd02569, PseudoU_synth_ScPus3, Pseudouridine synthase,
Saccharomyces cerevisiae Pus3 like. This group consists
of eukaryotic pseudouridine synthases similar to S.
cerevisiae Pus3p, mouse Pus3p and, human PUS2.
Pseudouridine synthases catalyze the isomerization of
specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi). No cofactors are required. S.
cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Mouse
Pus3p has been shown to makes psi38 and, possibly also
psi 39, in tRNAs. Psi38 and psi39 are highly conserved
in tRNAs from eubacteria, archea and eukarya.
Length = 256
Score = 27.2 bits (61), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 227 AQREACQILV-----ENFCDMDVKNYV 248
R+A ++L+ NFC MDV N V
Sbjct: 141 LMRKAAKLLLGEHDFRNFCKMDVANQV 167
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 27.6 bits (61), Expect = 8.8
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 45/187 (24%)
Query: 58 EVLNLL-KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVL 116
++L L +G ++N N +T LH + + CAS K+
Sbjct: 193 DILEWLCNNGVNVNLQNNHLITPLHTYLITGNV-----------------CASVIKK--- 232
Query: 117 NLLKSGADINTANVDGL----TALHQLKRWEESETNRQPSEM-GNKPKKIKFSSGCVFLA 171
+++ G D++ V+G+ T + + TN + GNK K I ++
Sbjct: 233 -IIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILH-SYIT 290
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQ-----------------AGADLNFQDY 214
+ D V + L+ G ++ + G T LHQ G DLN D
Sbjct: 291 LARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDN 350
Query: 215 DGWTPLH 221
G T LH
Sbjct: 351 IGNTVLH 357
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS. This
protein, TorS, is part of a regulatory system for the
torCAD operon that encodes the pterin molybdenum
cofactor-containing enzyme trimethylamine-N-oxide (TMAO)
reductase (TorA), a cognate chaperone (TorD), and a
penta-haem cytochrome (TorC). TorS works together with
the inducer-binding protein TorT and the response
regulator TorR. TorS contains histidine kinase ATPase
(pfam02518), HAMP (pfam00672), phosphoacceptor
(pfam00512), and phosphotransfer (pfam01627) domains and
a response regulator receiver domain (pfam00072) [Signal
transduction, Two-component systems].
Length = 968
Score = 27.4 bits (61), Expect = 9.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 124 DINTANVDGLTALHQLKRWEESETN 148
DIN + DG+T L QL+ ++
Sbjct: 753 DINLPDGDGVTLLQQLRAIYGAKNE 777
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.126 0.369
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,814,786
Number of extensions: 1035762
Number of successful extensions: 1066
Number of sequences better than 10.0: 1
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 94
Length of query: 251
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 156
Effective length of database: 6,723,972
Effective search space: 1048939632
Effective search space used: 1048939632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.0 bits)