RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9957
(251 letters)
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 129 bits (328), Expect = 1e-36
Identities = 88/289 (30%), Positives = 116/289 (40%), Gaps = 87/289 (30%)
Query: 12 KRAEQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKS------ 65
KR EQLKRW SET+ +P + K K+KF G VFLAAC+S D EEVL LL+
Sbjct: 9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINY 68
Query: 66 ---------------------------GADINTANVDGLTALHQVSKSASTLPLHSLNCG 98
GA+IN + +G LH
Sbjct: 69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLH----------------- 111
Query: 99 PGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH---QLKRWE--ESETNRQPSE 153
AA + + L+ GA + N +G T L + E ++E NRQ +
Sbjct: 112 ------AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165
Query: 154 MGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------- 205
+K + ++ L + G TALH A
Sbjct: 166 -IEAARKEEERIML----------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214
Query: 206 -------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
D+N +DYDGWTPLHAAAHW + EAC+ILVEN CDM+ N
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK 263
Score = 112 bits (282), Expect = 9e-30
Identities = 59/137 (43%), Positives = 74/137 (54%), Gaps = 16/137 (11%)
Query: 125 INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNL 184
+ A+ LKRW SET+ +P + K K+KF G VFLAAC+S D EEVL L
Sbjct: 1 MKMADAKQKRNEQ-LKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRL 59
Query: 185 LKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQR 229
L+ GADIN ANVDGLTALHQA GA++N D +GW PLHAAA
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119
Query: 230 EACQILVENFCDMDVKN 246
+ + L+ + N
Sbjct: 120 DIAEYLISQGAHVGAVN 136
Score = 59.1 bits (144), Expect = 2e-10
Identities = 29/151 (19%), Positives = 40/151 (26%), Gaps = 58/151 (38%)
Query: 56 KEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEV 115
++ L + G TALH A A E +
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTALH-----------------------VAAAKGYTEVL 215
Query: 116 LNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACAS 175
L+++ D+N + DG T LH AA
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLH--------------------------------AAAH-- 241
Query: 176 SDKEEVLNLLKS-GADINTANVDGLTALHQA 205
KEE +L D+ N G TA A
Sbjct: 242 WGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 107 bits (270), Expect = 8e-29
Identities = 32/219 (14%), Positives = 55/219 (25%), Gaps = 56/219 (25%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPG-----CVFL 104
A + + L DI T + + T + S
Sbjct: 19 ALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLH 78
Query: 105 AACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFS 164
A + + L + +N + G TAL+
Sbjct: 79 EAAKRGNLSWLRECLDNRVGVNGLDKAGSTALY--------------------------- 111
Query: 165 SGCVFLAACASSDKE--EVLNLLKSGADINTANVDGLTALHQA---------------GA 207
AC K+ E+L + ++N N G TALH A GA
Sbjct: 112 ------WACHGGHKDIVEML-FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Query: 208 DLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+ ++ + A + A + + N
Sbjct: 165 RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN 203
Score = 96.2 bits (240), Expect = 2e-24
Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 33/185 (17%)
Query: 78 TALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
+ K + A + + L DI T
Sbjct: 3 KPPPKPVKPGQV-KVFR-----------ALYTFEPRTPDELYIEEGDIIYITDMSDTNWW 50
Query: 138 QLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVD 197
+ + T PS + + + A + + L + +N +
Sbjct: 51 KGT--SKGRTGLIPSNYVAEQAESIDNP---LHEAAKRGNLSWLRECLDNRVGVNGLDKA 105
Query: 198 GLTALH----------------QAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCD 241
G TAL+ Q +LN Q+ G T LHAAA + Q+L+
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
Query: 242 MDVKN 246
D++N
Sbjct: 166 TDLRN 170
Score = 81.9 bits (203), Expect = 5e-19
Identities = 30/192 (15%), Positives = 49/192 (25%), Gaps = 74/192 (38%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + + L + +N + G TAL+ AC
Sbjct: 80 AAKRGNLSWLRECLDNRVGVNGLDKAGSTALY-----------------------WACHG 116
Query: 110 SDKE--EVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGC 167
K+ E+L + ++N N G TALH
Sbjct: 117 GHKDIVEML-FTQPNIELNQQNKLGDTALH------------------------------ 145
Query: 168 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQ 212
AA + V LL GA + N++ A A A
Sbjct: 146 ---AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202
Query: 213 DYDGWTPLHAAA 224
+ + + +
Sbjct: 203 NAEDYLDDEDSD 214
Score = 63.0 bits (154), Expect = 4e-12
Identities = 22/166 (13%), Positives = 40/166 (24%), Gaps = 67/166 (40%)
Query: 58 EVLNLL--KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEV 115
+++ +L + ++N N G TALH AA + V
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALH-----------------------AAAWKGYADIV 156
Query: 116 LNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACAS 175
LL GA + N++ A A +
Sbjct: 157 QLLLAKGARTDLRNIEKKLAFD---------------------------------MATNA 183
Query: 176 SDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLH 221
+ + + A +N + + D H
Sbjct: 184 ACASLLKKKQGTDAVRTLSNAEDYLDDEDS---------DLEHHHH 220
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 104 bits (263), Expect = 3e-28
Identities = 35/212 (16%), Positives = 56/212 (26%), Gaps = 71/212 (33%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + + ++ IN + +G T L A A
Sbjct: 10 LAAQGEMLYLATRIEQENVINHTDEEGFTPLM-----------------------WAAAH 46
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
V LL++GAD +AL
Sbjct: 47 GQIAVVEFLLQNGADPQLLGKGRESALS-------------------------------- 74
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
AC+ + V LL G D+N + +G T L A GAD +
Sbjct: 75 -LACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 133
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G+ + A R Q++ + +
Sbjct: 134 SGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 48.9 bits (118), Expect = 1e-07
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 15/65 (23%)
Query: 197 DGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCD 241
++HQ +N D +G+TPL AA Q + L++N D
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 242 MDVKN 246
+
Sbjct: 62 PQLLG 66
Score = 35.8 bits (84), Expect = 0.005
Identities = 9/70 (12%), Positives = 16/70 (22%), Gaps = 23/70 (32%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL+SGAD G ++ A A + +
Sbjct: 121 LLESGADPTIETDSGYNSMD-----------------------LAVALGYRSVQQVIESH 157
Query: 122 GADINTANVD 131
+ +
Sbjct: 158 LLKLLQNIKE 167
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 106 bits (266), Expect = 4e-27
Identities = 46/215 (21%), Positives = 69/215 (32%), Gaps = 53/215 (24%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
AC+ E LLK GA +N ++ T LH A +
Sbjct: 98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLH-----------------------EAASK 134
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ E LL GAD N G +A+ + + G
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMA------------PTPELRERLTYEFKGHSL 182
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA------------------GADLNF 211
L A +D +V L TALH A GA++N
Sbjct: 183 LQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE 242
Query: 212 QDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
++ D TPLH AA A + ++L ++ M+ +
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277
Score = 104 bits (261), Expect = 2e-26
Identities = 39/208 (18%), Positives = 63/208 (30%), Gaps = 72/208 (34%)
Query: 55 DKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEE 114
+ L+L A L + A S ++E+
Sbjct: 3 FGKSALDLADPSAKAVLTGEYKKDELLE-----------------------AARSGNEEK 39
Query: 115 VLNLLKS-GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAAC 173
++ LL + + ++ T LH A
Sbjct: 40 LMALLTPLNVNCHASDGRKSTPLH---------------------------------LAA 66
Query: 174 ASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWT 218
+ V LL+ GAD++ + GL LH A GA +N D +T
Sbjct: 67 GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT 126
Query: 219 PLHAAAHWAQREACQILVENFCDMDVKN 246
PLH AA + E C +L+ + D + N
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADPTLVN 154
Score = 102 bits (256), Expect = 1e-25
Identities = 45/201 (22%), Positives = 63/201 (31%), Gaps = 49/201 (24%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL GAD N G +A+ L G L A +D +V L
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF--KGHSLLQAAREADLAKVKKTLAL 200
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
TALH A +++V
Sbjct: 201 EIINFKQPQSHETALH-------------------------------CAVASLHPKRKQV 229
Query: 182 LNLL-KSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAH 225
LL + GA++N N D +T LH A GA +N D G T LH AA
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289
Query: 226 WAQREACQILVENFCDMDVKN 246
+ C++L+ D + +
Sbjct: 290 AGHLQTCRLLLSYGSDPSIIS 310
Score = 100 bits (252), Expect = 4e-25
Identities = 39/205 (19%), Positives = 62/205 (30%), Gaps = 72/205 (35%)
Query: 50 ACASSDKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A S ++E+++ LL + + ++ T LH A
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLH-----------------------LAAG 67
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ V LL+ GAD++ + GL LH
Sbjct: 68 YNRVRIVQLLLQHGADVHAKDKGGLVPLH------------------------------- 96
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
AC+ E LLK GA +N ++ T LH+A GAD +
Sbjct: 97 --NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 214 YDGWTPLHAAAHWAQREACQILVEN 238
G + + A RE +
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKG 179
Score = 94.5 bits (236), Expect = 6e-23
Identities = 43/219 (19%), Positives = 62/219 (28%), Gaps = 73/219 (33%)
Query: 43 SGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCV 102
G L A +D +V L TALH S H
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL-----HPKR------ 226
Query: 103 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIK 162
K+ LL+ GA++N N D +T LH
Sbjct: 227 ---------KQVAELLLRKGANVNEKNKDFMTPLH------------------------- 252
Query: 163 FSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GA 207
A + + + L K GA +N + G TALH+A G+
Sbjct: 253 --------VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Query: 208 DLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D + G+T EA Q ++ M +
Sbjct: 305 DPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD 338
Score = 83.7 bits (208), Expect = 6e-19
Identities = 33/174 (18%), Positives = 50/174 (28%), Gaps = 68/174 (39%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL+ GA++N N D +T LH A + + + L K
Sbjct: 233 LLRKGANVNEKNKDFMTPLH-----------------------VAAERAHNDVMEVLHKH 269
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
GA +N + G TALH A + +
Sbjct: 270 GAKMNALDSLGQTALH---------------------------------RAALAGHLQTC 296
Query: 182 LNLLKSGADINTANVDGLTALHQA----------GADLNFQDYDGWTPLHAAAH 225
LL G+D + ++ G TA + D D L A+
Sbjct: 297 RLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSDVDY--RLLEASK 348
Score = 66.7 bits (164), Expect = 4e-13
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 177 DKEEVLNLLKSGADINTANVDGLTALHQA----------------GADLNFQDYDGWTPL 220
+ L+L A L +A + + D TPL
Sbjct: 3 FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62
Query: 221 HAAAHWAQREACQILVENFCDMDVKNY 247
H AA + + Q+L+++ D+ K+
Sbjct: 63 HLAAGYNRVRIVQLLLQHGADVHAKDK 89
Score = 61.0 bits (149), Expect = 5e-11
Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 63/156 (40%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + + + L K GA +N + G TALH A +
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALH-----------------------RAALA 290
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ LL G+D + ++ G TA
Sbjct: 291 GHLQTCRLLLSYGSDPSIISLQGFTAAQ-------------------------------- 318
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
+ E V +L + T++VD L +A
Sbjct: 319 MGN------EAVQQILSESTPMRTSDVDY--RLLEA 346
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 100 bits (253), Expect = 9e-27
Identities = 40/213 (18%), Positives = 65/213 (30%), Gaps = 72/213 (33%)
Query: 50 ACASSDKEEVLNLLKSGAD-INTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A + +++ L+ G + +N + G T L A A
Sbjct: 9 LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLI-----------------------WASA 45
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ E V LL+ GAD + + +AL
Sbjct: 46 FGEIETVRFLLEWGADPHILAKERESALS------------------------------- 74
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A + V LL+ DIN + +G T L A GADL +
Sbjct: 75 --LASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA 132
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G+TP+ A R+ Q++ + + N
Sbjct: 133 DSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
Score = 80.9 bits (201), Expect = 4e-19
Identities = 30/173 (17%), Positives = 43/173 (24%), Gaps = 71/173 (41%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL+ GAD + + +AL A + V LL+
Sbjct: 55 LLEWGADPHILAKERESALS-----------------------LASTGGYTDIVGLLLER 91
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
DIN + +G T L A + + V
Sbjct: 92 DVDINIYDWNGGTPLL---------------------------------YAVRGNHVKCV 118
Query: 182 LNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTP 219
LL GAD+ T G T + A L + P
Sbjct: 119 EALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 42.8 bits (102), Expect = 2e-05
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 23/85 (27%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + + V LL GAD+ T G T + A A
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEADSGYTPMD-----------------------LAVAL 145
Query: 110 SDKEEVLNLLKSGADINTANVDGLT 134
++ + + +N+
Sbjct: 146 GYRKVQQVIENHILKLFQSNLVPAD 170
Score = 27.8 bits (63), Expect = 2.6
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 216 GWTPLHAAAHWAQREACQILVEN 238
+H A + + + +
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRK 24
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 99.8 bits (250), Expect = 1e-26
Identities = 39/206 (18%), Positives = 58/206 (28%), Gaps = 74/206 (35%)
Query: 48 LAACASSDKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
A A D +EV LL + N G TAL
Sbjct: 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ------------------------- 41
Query: 107 CASSDKEEVLN-LLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSS 165
+ LLK GA N + G + +H
Sbjct: 42 VMMFGSTAIALELLKQGASPNVQDTSGTSPVH---------------------------- 73
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA--------------GADLNF 211
A + + + L++ GAD+N + G +H A +DL+
Sbjct: 74 -----DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHR 128
Query: 212 QDYDGWTPLHAAAHWAQREACQILVE 237
+D G TPL A ++ IL
Sbjct: 129 RDARGLTPLELALQRGAQDLVDILQG 154
Score = 82.5 bits (205), Expect = 7e-20
Identities = 31/152 (20%), Positives = 39/152 (25%), Gaps = 52/152 (34%)
Query: 104 LAACASSDKEEVLNLLKS-GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIK 162
A A D +EV LL + N G TAL
Sbjct: 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ------------------------- 41
Query: 163 FSSGCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALHQA---------------G 206
+ LLK GA N + G + +H A G
Sbjct: 42 ----------VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91
Query: 207 ADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
AD+N D G P+H A L
Sbjct: 92 ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123
Score = 71.3 bits (176), Expect = 9e-16
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 170 LAACASSDKEEVLNLLKS-GADINTANVDGLTALHQA--------------GADLNFQDY 214
A A D +EV LL + N G TAL GA N QD
Sbjct: 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDT 66
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G +P+H AA + ++LVE+ D++V +
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 105 bits (265), Expect = 2e-26
Identities = 45/213 (21%), Positives = 61/213 (28%), Gaps = 71/213 (33%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A V NLL+ GA N +NV T LH A
Sbjct: 20 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLH-----------------------MAAR 56
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ E LL++ A +N D T LH
Sbjct: 57 AGHTEVAKYLLQNKAKVNAKAKDDQTPLH------------------------------- 85
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A V LL++ A+ N A G T LH A A
Sbjct: 86 --CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G+TPLH AA + + ++L+E +
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176
Score = 104 bits (261), Expect = 6e-26
Identities = 43/214 (20%), Positives = 57/214 (26%), Gaps = 71/214 (33%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A + E LL++ A +N D T LH A
Sbjct: 53 MAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH-----------------------CAAR 89
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
V LL++ A+ N A G T LH
Sbjct: 90 IGHTNMVKLLLENNANPNLATTAGHTPLH------------------------------- 118
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A E VL LL+ A G T LH A A N
Sbjct: 119 --IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
+G TPLH A H + ++L+ +
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210
Score = 103 bits (260), Expect = 7e-26
Identities = 43/212 (20%), Positives = 62/212 (29%), Gaps = 71/212 (33%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + E +LL+ G N +V G+T LH A
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLH-----------------------LAAQE 255
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
E V LL A+ N N GLT LH
Sbjct: 256 GHAEMVALLLSKQANGNLGNKSGLTPLH-------------------------------- 283
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
L+K G ++ G T LH A AD+N +
Sbjct: 284 -LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 342
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G++PLH AA + +L++N + +
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
Score = 103 bits (259), Expect = 1e-25
Identities = 42/196 (21%), Positives = 50/196 (25%), Gaps = 71/196 (36%)
Query: 66 GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADI 125
G GLT LH A V NLL+ GA
Sbjct: 4 GISGGGGGESGLTPLH-----------------------VASFMGHLPIVKNLLQRGASP 40
Query: 126 NTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLL 185
N +NV T LH A + E LL
Sbjct: 41 NVSNVKVETPLH---------------------------------MAARAGHTEVAKYLL 67
Query: 186 KSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQRE 230
++ A +N D T LH A A+ N G TPLH AA E
Sbjct: 68 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 127
Query: 231 ACQILVENFCDMDVKN 246
L+E
Sbjct: 128 TVLALLEKEASQACMT 143
Score = 103 bits (259), Expect = 1e-25
Identities = 44/213 (20%), Positives = 59/213 (27%), Gaps = 71/213 (33%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A E VL LL+ A G T LH A
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLH-----------------------VAAKY 156
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
LL+ A N A +GLT LH
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLH-------------------------------- 184
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
A ++ + V LL G ++ +G T LH A G N +
Sbjct: 185 -VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 243
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
G TPLH AA E +L+ + ++ N
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276
Score = 102 bits (258), Expect = 1e-25
Identities = 44/213 (20%), Positives = 68/213 (31%), Gaps = 71/213 (33%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A ++ + V LL G ++ +G T LH A
Sbjct: 185 VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH-----------------------IAAK 221
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ E +LL+ G N +V G+T LH
Sbjct: 222 QNQVEVARSLLQYGGSANAESVQGVTPLH------------------------------- 250
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A E V LL A+ N N GLT LH G ++
Sbjct: 251 --LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G+TPLH A+H+ + + L+++ D++ K
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341
Score = 101 bits (255), Expect = 4e-25
Identities = 42/213 (19%), Positives = 62/213 (29%), Gaps = 71/213 (33%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A LL+ A N A +GLT LH A
Sbjct: 152 VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH-----------------------VAVH 188
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
++ + V LL G ++ +G T LH
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAWNGYTPLH------------------------------- 217
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A + E +LL+ G N +V G+T LH A A+ N +
Sbjct: 218 --IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G TPLH A +L+++ +D
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Score = 101 bits (253), Expect = 8e-25
Identities = 45/212 (21%), Positives = 61/212 (28%), Gaps = 71/212 (33%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A V LL++ A+ N A G T LH A
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLH-----------------------IAARE 123
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
E VL LL+ A G T LH
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLH-------------------------------- 151
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
A LL+ A N A +GLT LH A G + +
Sbjct: 152 -VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+G+TPLH AA Q E + L++ + ++
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242
Score = 93.7 bits (234), Expect = 2e-22
Identities = 42/203 (20%), Positives = 52/203 (25%), Gaps = 71/203 (34%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A E V LL A+ N N GLT LH
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLH-----------------------LVAQE 288
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
L+K G ++ G T LH
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLH-------------------------------- 316
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
A + + V LL+ AD+N G + LHQA GA N
Sbjct: 317 -VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375
Query: 215 DGWTPLHAAAHWAQREACQILVE 237
DG TPL A +L
Sbjct: 376 DGTTPLAIAKRLGYISVTDVLKV 398
Score = 77.1 bits (191), Expect = 2e-16
Identities = 32/180 (17%), Positives = 46/180 (25%), Gaps = 74/180 (41%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
L+K G ++ G T LH A + + V LL+
Sbjct: 297 LIKHGVMVDATTRMGYTPLH-----------------------VASHYGNIKLVKFLLQH 333
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
AD+N G + LHQ A + V
Sbjct: 334 QADVNAKTKLGYSPLHQ---------------------------------AAQQGHTDIV 360
Query: 182 LNLLKSGADINTANVDGLTALHQA------------------GADLNFQDYDGWTPLHAA 223
LLK+GA N + DG T L A + + D +
Sbjct: 361 TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Score = 59.8 bits (146), Expect = 1e-10
Identities = 28/171 (16%), Positives = 45/171 (26%), Gaps = 67/171 (39%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + + V LL+ AD+N G + LHQ A
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ-----------------------AAQQ 354
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ V LLK+GA N + DG T L
Sbjct: 355 GHTDIVTLLLKNGASPNEVSSDGTTPLA-------------------------------- 382
Query: 170 LAACASSDKEEVLNLLKS----GADINTANVDGLTALHQA------GADLN 210
+A V ++LK + + ++ ++ D
Sbjct: 383 IA--KRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEG 431
Score = 27.8 bits (63), Expect = 3.3
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 48 LAACASSDKEEVLNLLKS----GADINTANVDGLTALHQV 83
LA V ++LK + + ++ ++ V
Sbjct: 381 LAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 102 bits (256), Expect = 2e-26
Identities = 40/205 (19%), Positives = 62/205 (30%), Gaps = 72/205 (35%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A + + NL+ G +N D ++ LH AC
Sbjct: 9 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLH-----------------------EACL 45
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
V LLK GA +N D T L
Sbjct: 46 GGHLSCVKILLKHGAQVNGVTADWHTPLF------------------------------- 74
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
AC S + V LL+ GA + + D + +H+A G +++ +
Sbjct: 75 --NACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKI 131
Query: 214 YDGWTPLHAAAHWAQREACQILVEN 238
TPL+ A QR + L+E+
Sbjct: 132 SHLGTPLYLACENQQRACVKKLLES 156
Score = 97.5 bits (244), Expect = 1e-24
Identities = 30/212 (14%), Positives = 55/212 (25%), Gaps = 74/212 (34%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A E V +L+ G +I+ T L+ AC +
Sbjct: 108 AARRGHVECVNSLIAYGGNIDHKISHLGTPLY-----------------------LACEN 144
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ V LL+SGAD+N + LH
Sbjct: 145 QQRACVKKLLESGADVNQGK-GQDSPLH-------------------------------- 171
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA-------------GADLNFQDYDG 216
A ++ +E L+ GAD N +G + +
Sbjct: 172 -AVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLCR 230
Query: 217 WTPLHAAAHWAQREACQILVENFCDMDVKNYV 248
+ ++++ D+K ++
Sbjct: 231 LRIRKCFGIQQHHKITKLVLPE----DLKQFL 258
Score = 97.1 bits (243), Expect = 2e-24
Identities = 47/212 (22%), Positives = 64/212 (30%), Gaps = 73/212 (34%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
AC V LLK GA +N D T L AC S
Sbjct: 43 ACLGGHLSCVKILLKHGAQVNGVTADWHTPLF-----------------------NACVS 79
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ V LL+ GA + + D + +H
Sbjct: 80 GSWDCVNLLLQHGASVQPES-DLASPIH-------------------------------- 106
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
A E V +L+ G +I+ T L+ A GAD+N Q
Sbjct: 107 -EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGK 164
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+PLHA A A E +L++ D KN
Sbjct: 165 GQDSPLHAVARTASEELACLLMDFGADTQAKN 196
Score = 89.4 bits (223), Expect = 1e-21
Identities = 37/213 (17%), Positives = 61/213 (28%), Gaps = 75/213 (35%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
AC S + V LL+ GA + + D + +H A
Sbjct: 75 NACVSGSWDCVNLLLQHGASVQPES-DLASPIH-----------------------EAAR 110
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
E V +L+ G +I+ T L+
Sbjct: 111 RGHVECVNSLIAYGGNIDHKISHLGTPLY------------------------------- 139
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
AC + + V LL+SGAD+N + LH GAD ++
Sbjct: 140 --LACENQQRACVKKLLESGADVNQGK-GQDSPLHAVARTASEELACLLMDFGADTQAKN 196
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+G P+ + Q+ +E +
Sbjct: 197 AEGKRPVELVPP--ESPLAQLFLEREGPPSLMQ 227
Score = 84.0 bits (209), Expect = 1e-19
Identities = 33/188 (17%), Positives = 50/188 (26%), Gaps = 72/188 (38%)
Query: 74 VDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGL 133
+ + +H A + + NL+ G +N D +
Sbjct: 1 MSDWSPMH-----------------------EAAIHGHQLSLRNLISQGWAVNIITADHV 37
Query: 134 TALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINT 193
+ LH AC V LLK GA +N
Sbjct: 38 SPLH---------------------------------EACLGGHLSCVKILLKHGAQVNG 64
Query: 194 ANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
D T L A GA + + D +P+H AA E L+
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAY 123
Query: 239 FCDMDVKN 246
++D K
Sbjct: 124 GGNIDHKI 131
Score = 70.2 bits (173), Expect = 1e-14
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 171 AACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYD 215
A + + NL+ G +N D ++ LH+A GA +N D
Sbjct: 9 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 68
Query: 216 GWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
TPL A + +L+++ + ++
Sbjct: 69 WHTPLFNACVSGSWDCVNLLLQHGASVQPESD 100
Score = 54.7 bits (133), Expect = 3e-09
Identities = 10/89 (11%), Positives = 20/89 (22%), Gaps = 25/89 (28%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A ++ +E L+ GAD N +G +
Sbjct: 172 AVARTASEELACLLMDFGADTQAKNAEGKRPVE-------------------------LV 206
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALH 137
+ L+ + + L
Sbjct: 207 PPESPLAQLFLEREGPPSLMQLCRLRIRK 235
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 101 bits (253), Expect = 1e-25
Identities = 41/214 (19%), Positives = 65/214 (30%), Gaps = 72/214 (33%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A + + NL+ G +N D ++ LH AC
Sbjct: 65 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLH-----------------------EACL 101
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
V LLK GA +N D T L
Sbjct: 102 GGHLSCVKILLKHGAQVNGVTADWHTPLF------------------------------- 130
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
AC S + V LL+ GA + + D + +H+A G +++ +
Sbjct: 131 --NACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
TPL+ A QR + L+E+ D++
Sbjct: 188 SHLGTPLYLACENQQRACVKKLLESGADVNQGKG 221
Score = 95.3 bits (238), Expect = 1e-23
Identities = 46/212 (21%), Positives = 63/212 (29%), Gaps = 73/212 (34%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
AC V LLK GA +N D T L AC S
Sbjct: 99 ACLGGHLSCVKILLKHGAQVNGVTADWHTPLF-----------------------NACVS 135
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ V LL+ GA + + D + +H
Sbjct: 136 GSWDCVNLLLQHGASVQPES-DLASPIH-------------------------------- 162
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
A E V +L+ G +I+ T L+ A GAD+N Q
Sbjct: 163 -EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGK 220
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+PLHA A E +L++ D KN
Sbjct: 221 GQDSPLHAVVRTASEELACLLMDFGADTQAKN 252
Score = 94.9 bits (237), Expect = 2e-23
Identities = 39/231 (16%), Positives = 59/231 (25%), Gaps = 79/231 (34%)
Query: 50 ACASSDKEEVLNLLKSGADIN-----TANVDGLTALHQVSKSASTL-------------- 90
+ L+ G+ + +DG L
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61
Query: 91 PLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQ 150
P+H A + + NL+ G +N D ++ LH
Sbjct: 62 PMH-----------EAAIHGHQLSLRNLISQGWAVNIITADHVSPLH------------- 97
Query: 151 PSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA----- 205
AC V LLK GA +N D T L A
Sbjct: 98 --------------------EACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 137
Query: 206 ----------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
GA + + D +P+H AA E L+ ++D K
Sbjct: 138 WDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187
Score = 86.0 bits (214), Expect = 3e-20
Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 73/192 (38%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
AC S + V LL+ GA + + D + +H A
Sbjct: 131 NACVSGSWDCVNLLLQHGASVQPES-DLASPIH-----------------------EAAR 166
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
E V +L+ G +I+ T L+
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTPLY------------------------------- 195
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
AC + + V LL+SGAD+N + LH GAD ++
Sbjct: 196 --LACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKN 252
Query: 214 YDGWTPLHAAAH 225
+G P+
Sbjct: 253 AEGKRPVELVPP 264
Score = 68.3 bits (168), Expect = 1e-13
Identities = 31/175 (17%), Positives = 47/175 (26%), Gaps = 71/175 (40%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A E V +L+ G +I+ T L+ AC +
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLY-----------------------LACEN 200
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ V LL+SGAD+N + LH
Sbjct: 201 QQRACVKKLLESGADVNQGK-GQDSPLH-------------------------------- 227
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA--------------GADLN 210
A ++ +E L+ GAD N +G + GA L
Sbjct: 228 -AVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGASLP 281
Score = 53.6 bits (130), Expect = 9e-09
Identities = 24/146 (16%), Positives = 39/146 (26%), Gaps = 58/146 (39%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
AC + + V LL+SGAD+N + LH A
Sbjct: 196 LACENQQRACVKKLLESGADVNQGK-GQDSPLH-----------------------AVVR 231
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
++ +E L+ GAD N +G +
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVE------------------------------- 260
Query: 169 FLAACASSDKEEVLNLLKSGADINTA 194
S ++ L + GA +
Sbjct: 261 --LVPPESPLAQLF-LEREGASLPKP 283
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 97.9 bits (245), Expect = 2e-25
Identities = 38/205 (18%), Positives = 55/205 (26%), Gaps = 72/205 (35%)
Query: 50 ACASSDKEEVLNLLKSGA-DINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
C + V L + D+N + G + LH AC
Sbjct: 12 QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLH-----------------------WACR 48
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
V L+ GA IN N T LH
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLH------------------------------- 77
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A + ++ V LL+ ADIN N G LH A GA ++ +
Sbjct: 78 --LAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 214 YDGWTPLHAAAHWAQREACQILVEN 238
G P+ A + + +
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEKM 160
Score = 89.4 bits (223), Expect = 3e-22
Identities = 35/191 (18%), Positives = 51/191 (26%), Gaps = 72/191 (37%)
Query: 72 ANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGA-DINTANV 130
+ + + + C + V L + D+N +
Sbjct: 1 GSPEFMDDIF-----------------------TQCREGNAVAVRLWLDNTENDLNQGDD 37
Query: 131 DGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGAD 190
G + LH AC V L+ GA
Sbjct: 38 HGFSPLH---------------------------------WACREGRSAVVEMLIMRGAR 64
Query: 191 INTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQIL 235
IN N T LH A AD+N + G PLH A W Q + + L
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 236 VENFCDMDVKN 246
V N + + N
Sbjct: 125 VANGALVSICN 135
Score = 74.0 bits (183), Expect = 1e-16
Identities = 36/190 (18%), Positives = 50/190 (26%), Gaps = 77/190 (40%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
AC V L+ GA IN N T LH A +
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDDTPLH-----------------------LAASH 82
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
++ V LL+ ADIN N G LH
Sbjct: 83 GHRDIVQKLLQYKADINAVNEHGNVPLHY------------------------------- 111
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
AC + +L+ +GA ++ N G + +A G +LN
Sbjct: 112 --ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR--- 166
Query: 215 DGWTPLHAAA 224
P
Sbjct: 167 ---IPYKDTF 173
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 96.3 bits (241), Expect = 2e-24
Identities = 45/214 (21%), Positives = 73/214 (34%), Gaps = 72/214 (33%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
AA + + L+++GA+I+T + D T L A
Sbjct: 17 AAAEAGHVDICHMLVQAGANIDTCSEDQRTPLM-----------------------EAAE 53
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
++ E V L+K+GA ++ + +G T LH
Sbjct: 54 NNHLEAVKYLIKAGALVDPKDAEGSTCLH------------------------------- 82
Query: 169 FLAACASSDKEEVLNLLKSGA-DINTANVDGLTALHQA---------------GADLNFQ 212
A E V LL +G D+N + G T + A G+D+N +
Sbjct: 83 --LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Query: 213 DYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D + LH AA + +IL+ CD+ N
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174
Score = 94.8 bits (237), Expect = 8e-24
Identities = 43/213 (20%), Positives = 68/213 (31%), Gaps = 72/213 (33%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A ++ E V L+K+GA ++ + +G T LH A
Sbjct: 51 AAENNHLEAVKYLIKAGALVDPKDAEGSTCLH-----------------------LAAKK 87
Query: 110 SDKEEVLNLLKSGA-DINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
E V LL +G D+N + G T +
Sbjct: 88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMI------------------------------- 116
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A + V LL G+DIN + + LH A DL+ +
Sbjct: 117 --WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G +PLH AA + + + + D+ +KN
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Score = 87.5 bits (218), Expect = 5e-21
Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 72/196 (36%)
Query: 67 ADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADIN 126
+ + + + LH AA + + L+++GA+I+
Sbjct: 2 MNFKMEHQNKRSPLH-----------------------AAAEAGHVDICHMLVQAGANID 38
Query: 127 TANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLK 186
T + D T L A ++ E V L+K
Sbjct: 39 TCSEDQRTPLM---------------------------------EAAENNHLEAVKYLIK 65
Query: 187 SGADINTANVDGLTALHQA---------------GA-DLNFQDYDGWTPLHAAAHWAQRE 230
+GA ++ + +G T LH A G D+N QD GWTP+ A + +
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125
Query: 231 ACQILVENFCDMDVKN 246
++L+ D+++++
Sbjct: 126 LVKLLLSKGSDINIRD 141
Score = 86.3 bits (215), Expect = 1e-20
Identities = 37/205 (18%), Positives = 61/205 (29%), Gaps = 72/205 (35%)
Query: 50 ACASSDKEEVLNLLKSGA-DINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A E V LL +G D+N + G T + A
Sbjct: 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI-----------------------WATE 120
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ V LL G+DIN + + LH
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLH------------------------------- 149
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A S + LL + D++ N+ G + LH A +D+ ++
Sbjct: 150 --WAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Query: 214 YDGWTPLHAAAHWAQREACQILVEN 238
+G TPL A+ +Q + + +
Sbjct: 208 KEGETPLQCASLNSQVWSALQMSKA 232
Score = 34.7 bits (81), Expect = 0.015
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 23/63 (36%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
L +D+ N +G T L A +S L + K+
Sbjct: 196 FLSRDSDVTLKNKEGETPLQ-----------------------CASLNSQVWSALQMSKA 232
Query: 122 GAD 124
D
Sbjct: 233 LQD 235
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 94.4 bits (236), Expect = 3e-24
Identities = 49/197 (24%), Positives = 69/197 (35%), Gaps = 71/197 (36%)
Query: 56 KEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEV 115
+EV L+ +GAD+N + G T LH A + E V
Sbjct: 27 DDEVRILMANGADVNAEDASGWTPLH-----------------------LAAFNGHLEIV 63
Query: 116 LNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACAS 175
LLK+GAD+N + G+T L A
Sbjct: 64 EVLLKNGADVNAVDHAGMTPLR---------------------------------LAALF 90
Query: 176 SDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPL 220
E V LLK+GAD+N +++G T LH A GAD+N QD G T
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 221 HAAAHWAQREACQILVE 237
+ + +IL +
Sbjct: 151 DISIDNGNEDLAEILQK 167
Score = 87.0 bits (217), Expect = 2e-21
Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 72/197 (36%)
Query: 66 GADINTAN-VDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGAD 124
G+ + + D L A + +EV L+ +GAD
Sbjct: 3 GSHHHHHHGSDLGKKLL-----------------------EAARAGRDDEVRILMANGAD 39
Query: 125 INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNL 184
+N + G T LH A + E V L
Sbjct: 40 VNAEDASGWTPLH---------------------------------LAAFNGHLEIVEVL 66
Query: 185 LKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQR 229
LK+GAD+N + G+T L A GAD+N D +G TPLH AA +
Sbjct: 67 LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126
Query: 230 EACQILVENFCDMDVKN 246
E ++L++N D++ ++
Sbjct: 127 EIVEVLLKNGADVNAQD 143
Score = 52.4 bits (127), Expect = 8e-09
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 188 GADINTAN-VDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREA 231
G+ + + D L +A GAD+N +D GWTPLH AA E
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 232 CQILVENFCDMDVKNY 247
++L++N D++ ++
Sbjct: 63 VEVLLKNGADVNAVDH 78
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 93.3 bits (233), Expect = 3e-24
Identities = 34/190 (17%), Positives = 46/190 (24%), Gaps = 75/190 (39%)
Query: 66 GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADI 125
I+ L A A E V LL++GAD
Sbjct: 2 SPGIHMLGGSSDAGLA-----------------------TAAARGQVETVRQLLEAGADP 38
Query: 126 NTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLN-L 184
N N G + +V L
Sbjct: 39 NALNRFGRRPIQ-----------------------------------VMMMGSAQVAELL 63
Query: 185 LKSGADINTANVDGLT-ALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
L GA+ N A+ LT +H A GA L+ D G P+ A
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123
Query: 229 REACQILVEN 238
R+ + L
Sbjct: 124 RDIARYLHAA 133
Score = 77.9 bits (193), Expect = 2e-18
Identities = 26/140 (18%), Positives = 36/140 (25%), Gaps = 48/140 (34%)
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
I+ L A A E V
Sbjct: 2 SPGIHMLGGSSDAGLA---------------------------------TAAARGQVETV 28
Query: 182 LNLLKSGADINTANVDGLTALHQA--------------GADLNFQDYDGWT-PLHAAAHW 226
LL++GAD N N G + GA+ N D T P+H AA
Sbjct: 29 RQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAARE 88
Query: 227 AQREACQILVENFCDMDVKN 246
+ +L +DV +
Sbjct: 89 GFLDTLVVLHRAGARLDVCD 108
Score = 50.9 bits (123), Expect = 1e-08
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 23/88 (26%)
Query: 51 CASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
+V LL GA+ N A+ T P+H A
Sbjct: 51 VMMMGSAQVAELLLLHGAEPNCADPAT-----------LTRPVH-----------DAARE 88
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALH 137
+ ++ L ++GA ++ + G +
Sbjct: 89 GFLDTLVVLHRAGARLDVCDAWGRLPVD 116
Score = 48.2 bits (116), Expect = 2e-07
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 205 AGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
++ L AA Q E + L+E D + N
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN 42
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 95.8 bits (239), Expect = 3e-24
Identities = 34/209 (16%), Positives = 63/209 (30%), Gaps = 74/209 (35%)
Query: 34 NKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLH 93
K ++ + + + L A + + E V +K D + N +G+TALH
Sbjct: 12 RKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN----------- 60
Query: 94 SLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSE 153
A ++ V L+ +GA++N+ + G T LH
Sbjct: 61 ------------AICGANYSIVDFLITAGANVNSPDSHGWTPLH---------------- 92
Query: 154 MGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANV-DGLTALHQA------- 205
A + +D + L++ GA I + DG TA +
Sbjct: 93 -----------------CAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGY 135
Query: 206 ----------GADLNFQDYDGWTPLHAAA 224
+ + L +
Sbjct: 136 ADCATYLADVEQSMGLMNSGAVYALWDYS 164
Score = 90.8 bits (226), Expect = 2e-22
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 156 NKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------- 205
K ++ + + + L A + + E V +K D + N +G+TALH A
Sbjct: 12 RKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVD 71
Query: 206 -----GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
GA++N D GWTPLH AA C LV++ +
Sbjct: 72 FLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Score = 88.5 bits (220), Expect = 2e-21
Identities = 34/206 (16%), Positives = 58/206 (28%), Gaps = 77/206 (37%)
Query: 62 LLKSGADINTAN---VDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNL 118
+L+ A ++ L L A + + E V
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLL-----------------------DAALTGELEVVQQA 40
Query: 119 LKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDK 178
+K D + N +G+TALH A ++
Sbjct: 41 VKEMNDPSQPNEEGITALHN---------------------------------AICGANY 67
Query: 179 EEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD-YDGWTPLHA 222
V L+ +GA++N+ + G T LH A GA + DG T
Sbjct: 68 SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127
Query: 223 AAHWAQ--REACQILVENFCDMDVKN 246
+ + + L + M + N
Sbjct: 128 CDPYREGYADCATYLADVEQSMGLMN 153
Score = 84.2 bits (209), Expect = 6e-20
Identities = 29/197 (14%), Positives = 48/197 (24%), Gaps = 71/197 (36%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A ++ V L+ +GA++N+ + G T LH A +
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLH-----------------------CAASC 97
Query: 110 SDKEEVLNLLKSGADINTANV-DGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+D + L++ GA I + DG TA
Sbjct: 98 NDTVICMALVQHGAAIFATTLSDGATAFE------------------------------- 126
Query: 169 FLAACASSDKEEVLNLLKS-GADINTANVDGLTALH--------------QAGADLNFQD 213
+ L + N + AL + +D
Sbjct: 127 -KCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRD 185
Query: 214 YDGWTPLHAAAHWAQRE 230
T AA Q
Sbjct: 186 GPEETDWWWAALHGQEG 202
Score = 43.0 bits (102), Expect = 3e-05
Identities = 7/91 (7%), Positives = 14/91 (15%), Gaps = 25/91 (27%)
Query: 48 LAACASSDKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
+ L + N + AL S
Sbjct: 127 KCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG------------------ 168
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALH 137
+E+ + + T
Sbjct: 169 ------DELSFREGESVTVLRRDGPEETDWW 193
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 95.2 bits (238), Expect = 5e-24
Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 72/213 (33%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A S + LL++ AD N + G T LH AA ++
Sbjct: 32 AARYSRSDAAKRLLEASADANIQDNMGRTPLH-----------------------AAVSA 68
Query: 110 SDKEEVLNLLKSGA-DINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ L+++ A D++ DG T L
Sbjct: 69 DAQGVFQILIRNRATDLDARMHDGTTPLI------------------------------- 97
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A + + + +L+ S AD+N + G +ALH A GA+ + Q+
Sbjct: 98 --LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 155
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
TPL AA E ++L+++F + D+ +
Sbjct: 156 NREETPLFLAAREGSYETAKVLLDHFANRDITD 188
Score = 88.2 bits (220), Expect = 2e-21
Identities = 43/202 (21%), Positives = 67/202 (33%), Gaps = 73/202 (36%)
Query: 62 LLKSGADI-NTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLK 120
+ GA + N + G TALH A S + LL+
Sbjct: 10 FIYQGASLHNQTDRTGETALH-----------------------LAARYSRSDAAKRLLE 46
Query: 121 SGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEE 180
+ AD N + G T LH AA ++ +
Sbjct: 47 ASADANIQDNMGRTPLH---------------------------------AAVSADAQGV 73
Query: 181 VLNLLKSGA-DINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAA 224
L+++ A D++ DG T L A AD+N D G + LH AA
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 133
Query: 225 HWAQREACQILVENFCDMDVKN 246
+A +L++N + D++N
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQN 155
Score = 87.5 bits (218), Expect = 3e-21
Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 73/204 (35%)
Query: 52 ASSDKEEVLNLL--KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
S+D + V +L D++ DG T L A
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHDGTTPLI-----------------------LAARL 102
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ + + +L+ S AD+N + G +ALH
Sbjct: 103 AVEGMLEDLINSHADVNAVDDLGKSALH-------------------------------- 130
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
A A ++ + + LLK+GA+ + N T L A A+ + D+
Sbjct: 131 -WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 189
Query: 215 DGWTPLHAAAHWAQREACQILVEN 238
P A + ++L E
Sbjct: 190 MDRLPRDIAQERMHHDIVRLLDEY 213
Score = 48.6 bits (117), Expect = 4e-07
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 23/88 (26%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A A ++ + + LLK+GA+ + N T L LAA
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLF----------------------LAAREG 169
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALH 137
S E LL A+ + +
Sbjct: 170 S-YETAKVLLDHFANRDITDHMDRLPRD 196
Score = 33.9 bits (79), Expect = 0.026
Identities = 6/67 (8%), Positives = 12/67 (17%), Gaps = 23/67 (34%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL A+ + + A + V L +
Sbjct: 177 LLDHFANRDITDHMDRLPRD-----------------------IAQERMHHDIVRLLDEY 213
Query: 122 GADINTA 128
+
Sbjct: 214 NLVRSPQ 220
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 96.1 bits (240), Expect = 6e-24
Identities = 46/231 (19%), Positives = 66/231 (28%), Gaps = 56/231 (24%)
Query: 50 ACASSDKEEVLNLLKSGAD---INTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
A + + LL A ++ N G TALH A
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALH-----------------------LA 52
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALHQ--------------LKRWEESETNRQPS 152
+ V L +GA + A G TALH R
Sbjct: 53 AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112
Query: 153 EMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA------- 205
++ S + + + + EE + N DG T LH A
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172
Query: 206 --------GADLNFQDYD-GWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
GADLN + G TPLH A ++L++ D + Y
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY 223
Score = 89.5 bits (223), Expect = 2e-21
Identities = 36/194 (18%), Positives = 49/194 (25%), Gaps = 72/194 (37%)
Query: 48 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAAC 107
+ + + + EE + N DG T LH A
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH-----------------------VAV 166
Query: 108 ASSDKEEVLNLLKSGADINTANVD-GLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSG 166
D E V L +GAD+N G T LH
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLH----------------------------- 197
Query: 167 CVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNF 211
A + + LLK+GAD G T L A GA
Sbjct: 198 ----LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Query: 212 QDYDGWTPLHAAAH 225
D +P ++
Sbjct: 254 DGGDKLSPCSSSGS 267
Score = 89.1 bits (222), Expect = 3e-21
Identities = 40/214 (18%), Positives = 54/214 (25%), Gaps = 60/214 (28%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQ-VSKSASTLPLHSLNCGPGCVFLAACA 108
AC LL+ D Q + S P + +
Sbjct: 85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA----------VDSQP 134
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ + EE + N DG T LH
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLH------------------------------- 163
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVD-GLTALHQA---------------GADLNFQ 212
A D E V L +GAD+N G T LH A GAD +
Sbjct: 164 --VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 213 DYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
Y G TPL +A ++L +
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG 255
Score = 62.6 bits (153), Expect = 8e-12
Identities = 25/140 (17%), Positives = 34/140 (24%), Gaps = 51/140 (36%)
Query: 125 INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNL 184
DG TALH A + + L
Sbjct: 2 FGYVTEDGDTALH---------------------------------LAVIHQHEPFLDFL 28
Query: 185 LKSGAD---INTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHW 226
L A ++ N G TALH A GA + + G T LH A
Sbjct: 29 LGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88
Query: 227 AQREACQILVENFCDMDVKN 246
+L++
Sbjct: 89 RAHTCACVLLQPRPSHPRDA 108
Score = 61.4 bits (150), Expect = 2e-11
Identities = 32/211 (15%), Positives = 46/211 (21%), Gaps = 88/211 (41%)
Query: 69 INTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGAD---I 125
DG TALH A + + LL A +
Sbjct: 2 FGYVTEDGDTALH-----------------------LAVIHQHEPFLDFLLGFSAGHEYL 38
Query: 126 NTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLL 185
+ N G TALH A + V L
Sbjct: 39 DLQNDLGQTALH---------------------------------LAAILGEASTVEKLY 65
Query: 186 KSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTP----------- 219
+GA + A G TALH A D +
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 220 ---LHAAAHWAQREACQILVENFCDMDVKNY 247
+ + E + ++ +NY
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENY 156
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 92.5 bits (231), Expect = 6e-24
Identities = 37/188 (19%), Positives = 51/188 (27%), Gaps = 72/188 (38%)
Query: 66 GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADI 125
G D T N G T LH A D V LL++G+D
Sbjct: 1 GIDPFT-NHRGETLLH-----------------------IASIKGDIPSVEYLLQNGSDP 36
Query: 126 NTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLL 185
N + G T LH AC + V LL
Sbjct: 37 NVKDHAGWTPLH---------------------------------EACNHGHLKVVELLL 63
Query: 186 KSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQRE 230
+ A +NT + LH A GA N + G P+ + +
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS 123
Query: 231 ACQILVEN 238
+ +N
Sbjct: 124 LLLLPEKN 131
Score = 80.9 bits (201), Expect = 1e-19
Identities = 31/140 (22%), Positives = 43/140 (30%), Gaps = 49/140 (35%)
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
G D T N G T LH A D V
Sbjct: 1 GIDPFT-NHRGETLLH---------------------------------IASIKGDIPSV 26
Query: 182 LNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHW 226
LL++G+D N + G T LH+A A +N Y +PLH AA
Sbjct: 27 EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKN 86
Query: 227 AQREACQILVENFCDMDVKN 246
+ ++L+ + N
Sbjct: 87 GHVDIVKLLLSYGASRNAVN 106
Score = 61.7 bits (151), Expect = 2e-12
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 188 GADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREAC 232
G D T N G T LH A G+D N +D+ GWTPLH A + +
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 233 QILVENFCDMDVKNY 247
++L+++ ++ Y
Sbjct: 60 ELLLQHKALVNTTGY 74
Score = 51.7 bits (125), Expect = 9e-09
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 23/88 (26%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
AC + V LL+ A +NT + LH A +
Sbjct: 50 ACNHGHLKVVELLLQHKALVNTTGYQNDSPLH-----------------------DAAKN 86
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALH 137
+ V LL GA N N+ GL +
Sbjct: 87 GHVDIVKLLLSYGASRNAVNIFGLRPVD 114
Score = 37.8 bits (89), Expect = 7e-04
Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 24/67 (35%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL GA N N+ GL + + +L L +
Sbjct: 95 LLSYGASRNAVNIFGLRPVD----------------------YT--DDESMKSLLLLPEK 130
Query: 122 GADINTA 128
+ +
Sbjct: 131 NESSSAS 137
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 95.7 bits (239), Expect = 1e-23
Identities = 37/203 (18%), Positives = 53/203 (26%), Gaps = 74/203 (36%)
Query: 52 ASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSD 111
++ K + L S D A+V G +A + A A ++
Sbjct: 7 INTWKSKQLKSFLSSKDTFKADVHGHSASY-----------------------YAIADNN 43
Query: 112 KEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLA 171
V LL +GA N + LH
Sbjct: 44 VRLVCTLLNAGALKNLL--ENEFPLH---------------------------------Q 68
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDG 216
A D + V LL SG D + + G TAL+ A L F G
Sbjct: 69 AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128
Query: 217 W-TPLHAAAHWAQREACQILVEN 238
W T + A +
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSE 151
Score = 89.1 bits (222), Expect = 2e-21
Identities = 33/214 (15%), Positives = 54/214 (25%), Gaps = 75/214 (35%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A A ++ V LL +GA N + LH A
Sbjct: 37 YAIADNNVRLVCTLLNAGALKNLL--ENEFPLH-----------------------QAAT 71
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
D + V LL SG D + + G TAL+
Sbjct: 72 LEDTKIVKILLFSGLDDSQFDDKGNTALY------------------------------- 100
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGL-TALHQA---------------GADLNFQ 212
A S + + V +K + G T+ + A F
Sbjct: 101 --YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFD 157
Query: 213 DYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+ +H + +L++ + N
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN 191
Score = 83.3 bits (207), Expect = 4e-19
Identities = 31/216 (14%), Positives = 50/216 (23%), Gaps = 74/216 (34%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A D + V LL SG D + + G TAL+ A S
Sbjct: 69 AATLEDTKIVKILLFSGLDDSQFDDKGNTALY-----------------------YAVDS 105
Query: 110 SDKEEVLNLLKSGADINTANVDGL-TALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ + V +K + G T+ +
Sbjct: 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFY------------------------------- 134
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A +D V L L+ +H N +
Sbjct: 135 --HAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIHITIKNGHVDMMILLLDYMTSTNTNN 191
Query: 214 YDGWTP-LHAAAHWAQREACQILVENFCDMDVKNYV 248
+ P + A E Q L + ++ N
Sbjct: 192 SLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLE 227
Score = 82.6 bits (205), Expect = 6e-19
Identities = 28/154 (18%), Positives = 45/154 (29%), Gaps = 50/154 (32%)
Query: 108 ASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGC 167
++ K + L S D A+V G +A +
Sbjct: 7 INTWKSKQLKSFLSSKDTFKADVHGHSASY------------------------------ 36
Query: 168 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQ 212
A A ++ V LL +GA N + LHQA G D +
Sbjct: 37 ---YAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQF 91
Query: 213 DYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D G T L+ A + ++ V+ +
Sbjct: 92 DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG 125
Score = 65.6 bits (161), Expect = 8e-13
Identities = 20/189 (10%), Positives = 39/189 (20%), Gaps = 66/189 (34%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A +D V L L+ +H
Sbjct: 135 HAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIH-----------------------ITIK 170
Query: 109 SSDKEEVLNLLKSGADINTANVDGLT-ALHQLKRWEESETNRQPSEMGNKPKKIKFSSGC 167
+ + ++ LL NT N +
Sbjct: 171 NGHVDMMILLLDYMTSTNTNNSLLFIPDIK------------------------------ 200
Query: 168 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALH--------QAGADLNFQDYDGWTP 219
A + D E + L K +I +AN++ + + + Y
Sbjct: 201 ---LAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLD 257
Query: 220 LHAAAHWAQ 228
+ +
Sbjct: 258 IVKNNKLDE 266
Score = 64.1 bits (157), Expect = 3e-12
Identities = 21/215 (9%), Positives = 44/215 (20%), Gaps = 81/215 (37%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGL-TALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A S + + V +K + G T+ + A
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFY-----------------------HAVM 138
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+D V L L+ +H
Sbjct: 139 LNDVSIVSYFLSEIPSTFDLA-ILLSCIH------------------------------- 166
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLT-ALHQA---------------GADLNFQ 212
+ + ++ LL NT N + A ++
Sbjct: 167 --ITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-- 222
Query: 213 DYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
+ E ++++E + +Y
Sbjct: 223 -----SANLENVLLDDAEIAKMIIEKHVEYKSDSY 252
Score = 47.9 bits (115), Expect = 9e-07
Identities = 7/77 (9%), Positives = 18/77 (23%), Gaps = 19/77 (24%)
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQR 229
L+ + +++ + L D D G + + A
Sbjct: 4 LSRINTWKSKQLKSFLS-------------------SKDTFKADVHGHSASYYAIADNNV 44
Query: 230 EACQILVENFCDMDVKN 246
L+ ++
Sbjct: 45 RLVCTLLNAGALKNLLE 61
Score = 31.0 bits (71), Expect = 0.34
Identities = 3/41 (7%), Positives = 13/41 (31%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTL 90
D E +++ + + + + + +K +
Sbjct: 228 NVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEII 268
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 94.4 bits (236), Expect = 1e-23
Identities = 34/201 (16%), Positives = 54/201 (26%), Gaps = 71/201 (35%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
L+K GAD + + +G + +H A V L+
Sbjct: 95 LMKYGADPSLIDGEGCSCIH-----------------------LAAQFGHTSIVAYLIAK 131
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
G D++ + +G+T L AA + +
Sbjct: 132 GQDVDMMDQNGMTPLM--------------------------------WAAYRTHSVDPT 159
Query: 182 LNLLKSGADINTA-NVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAH 225
LL +N TALH A GA+++ Q+ G + L A
Sbjct: 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Query: 226 WAQREACQILVENFCDMDVKN 246
L E N
Sbjct: 220 RKNVWMINHLQEARQAKGYDN 240
Score = 89.8 bits (224), Expect = 6e-22
Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 73/214 (34%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A E L+++G D+ + + +T LH A +
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLH-----------------------WAAIN 52
Query: 110 SDKEEVLNLLKSGADINTANVD-GLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ + V + GA ++ D T LH
Sbjct: 53 NRIDLVKYYISKGAIVDQLGGDLNSTPLH------------------------------- 81
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A V+ L+K GAD + + +G + +H A G D++ D
Sbjct: 82 --WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 214 YDGWTPLHAAAHWA-QREACQILVENFCDMDVKN 246
+G TPL AA+ + ++L+ +++ +
Sbjct: 140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD 173
Score = 89.0 bits (222), Expect = 1e-21
Identities = 37/216 (17%), Positives = 62/216 (28%), Gaps = 74/216 (34%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVD-GLTALHQVSKSASTLPLHSLNCGPGCVFLAAC 107
A ++ + V + GA ++ D T LH A
Sbjct: 48 WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH-----------------------WAT 84
Query: 108 ASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGC 167
V+ L+K GAD + + +G + +H
Sbjct: 85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIH------------------------------ 114
Query: 168 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA----------------GADLNF 211
A V L+ G D++ + +G+T L A +N
Sbjct: 115 ---LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171
Query: 212 QD-YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D Y T LH A +L+E ++D +N
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN 207
Score = 81.7 bits (203), Expect = 6e-19
Identities = 28/194 (14%), Positives = 53/194 (27%), Gaps = 72/194 (37%)
Query: 69 INTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTA 128
+ + + A E L+++G D+
Sbjct: 2 MTHIDDYSTWDIV-----------------------KATQYGIYERCRELVEAGYDVRQP 38
Query: 129 NVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSG 188
+ + +T LH A ++ + V + G
Sbjct: 39 DKENVTLLH---------------------------------WAAINNRIDLVKYYISKG 65
Query: 189 ADINTANVD-GLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREAC 232
A ++ D T LH A GAD + D +G + +H AA +
Sbjct: 66 AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIV 125
Query: 233 QILVENFCDMDVKN 246
L+ D+D+ +
Sbjct: 126 AYLIAKGQDVDMMD 139
Score = 48.2 bits (116), Expect = 5e-07
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 24/91 (26%)
Query: 48 LAACASSDKEEVLNLLKSGADINTA-NVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
AA + + LL +N TALH A
Sbjct: 148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALH-----------------------WA 184
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALH 137
+ + + LL++GA+++ N+ G +AL
Sbjct: 185 VLAGNTTVISLLLEAGANVDAQNIKGESALD 215
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 94.5 bits (236), Expect = 2e-23
Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 72/213 (33%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A S + LL++ AD N + G T LH AA ++
Sbjct: 64 AARYSRSDAAKRLLEASADANIQDNMGRTPLH-----------------------AAVSA 100
Query: 110 SDKEEVLNLLKSGA-DINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ L+++ A D++ DG T L
Sbjct: 101 DAQGVFQILIRNRATDLDARMHDGTTPLI------------------------------- 129
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
A + + + +L+ S AD+N + G +ALH A GA+ + Q+
Sbjct: 130 --LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
TPL AA E ++L+++F + D+ +
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Score = 86.4 bits (215), Expect = 2e-20
Identities = 44/197 (22%), Positives = 64/197 (32%), Gaps = 62/197 (31%)
Query: 68 DINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLN-LLKSGADI- 125
D+N DG T L AS G G + D V++ + GA +
Sbjct: 2 DVNVRGPDGFTPLM----IAS-------CSGGGLETGNSEEEEDAPAVISDFIYQGASLH 50
Query: 126 NTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLL 185
N + G TALH A S + LL
Sbjct: 51 NQTDRTGETALH---------------------------------LAARYSRSDAAKRLL 77
Query: 186 KSGADINTANVDGLTALHQA----------------GADLNFQDYDGWTPLHAAAHWAQR 229
++ AD N + G T LH A DL+ + +DG TPL AA A
Sbjct: 78 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Query: 230 EACQILVENFCDMDVKN 246
+ L+ + D++ +
Sbjct: 138 GMLEDLINSHADVNAVD 154
Score = 84.8 bits (211), Expect = 6e-20
Identities = 35/204 (17%), Positives = 61/204 (29%), Gaps = 73/204 (35%)
Query: 52 ASSDKEEVLNLLKS--GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
S+D + V +L D++ DG T L A
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLI-----------------------LAARL 134
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ + + +L+ S AD+N + G +ALH
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALH-------------------------------- 162
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
A A ++ + + LLK+GA+ + N T L A A+ + D+
Sbjct: 163 -WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 221
Query: 215 DGWTPLHAAAHWAQREACQILVEN 238
P A + ++L
Sbjct: 222 MDRLPRDIAQERMHHDIVRLLDLE 245
Score = 49.0 bits (118), Expect = 3e-07
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 23/88 (26%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A A ++ + + LLK+GA+ + N T L LAA
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLF----------------------LAAREG 201
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALH 137
S E LL A+ + +
Sbjct: 202 S-YETAKVLLDHFANRDITDHMDRLPRD 228
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 94.1 bits (235), Expect = 2e-23
Identities = 50/217 (23%), Positives = 72/217 (33%), Gaps = 76/217 (35%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A ++ V L+ +GA + G TA H AC
Sbjct: 53 AVITTLPSVVRLLVTAGASPMALDRHGQTAAH-----------------------LACEH 89
Query: 110 SDKEEVLNLLKSGA----DINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSS 165
+ LL S A D+ N DGLTALH
Sbjct: 90 RSPTCLRALLDSAAPGTLDLEARNYDGLTALH---------------------------- 121
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANV-DGLTALHQA---------------GADL 209
A + +E V LL+ GADI+ ++ G + L A GA++
Sbjct: 122 -----VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
Query: 210 NFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
N Q Y G + LH+A+ + LV + D +KN
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 213
Score = 87.9 bits (219), Expect = 3e-21
Identities = 41/206 (19%), Positives = 63/206 (30%), Gaps = 76/206 (36%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
+ G +++ N T LH A ++ V L+ +
Sbjct: 32 FQQGGRELDIYNNLRQTPLH-----------------------LAVITTLPSVVRLLVTA 68
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
GA + G TA H AC +
Sbjct: 69 GASPMALDRHGQTAAH---------------------------------LACEHRSPTCL 95
Query: 182 LNLLKSGA----DINTANVDGLTALHQA---------------GADLNFQDY-DGWTPLH 221
LL S A D+ N DGLTALH A GAD++ D G +PL
Sbjct: 96 RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI 155
Query: 222 AAAHWAQREACQILVENFCDMDVKNY 247
A Q+L+++ +++ + Y
Sbjct: 156 HAVENNSLSMVQLLLQHGANVNAQMY 181
Score = 86.4 bits (215), Expect = 1e-20
Identities = 45/209 (21%), Positives = 65/209 (31%), Gaps = 76/209 (36%)
Query: 50 ACASSDKEEVLNLLKSGA----DINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLA 105
AC + LL S A D+ N DGLTALH
Sbjct: 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-----------------------V 122
Query: 106 ACASSDKEEVLNLLKSGADINTANV-DGLTALHQLKRWEESETNRQPSEMGNKPKKIKFS 164
A + +E V LL+ GADI+ ++ G + L
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLI--------------------------- 155
Query: 165 SGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADL 209
A ++ V LL+ GA++N G +ALH A GAD
Sbjct: 156 ------HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209
Query: 210 NFQDYDGWTPLHAAAHWAQREACQILVEN 238
+ ++ TPL A + +
Sbjct: 210 SLKNCHNDTPLMVARSRRVIDILRGKATR 238
Score = 79.8 bits (198), Expect = 3e-18
Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 79/201 (39%)
Query: 69 INTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLL----KSGAD 124
A+ DG T LH A + V L+ + G +
Sbjct: 2 ATRADEDGDTPLH-----------------------IAVVQGNLPAVHRLVNLFQQGGRE 38
Query: 125 INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNL 184
++ N T LH A ++ V L
Sbjct: 39 LDIYNNLRQTPLH---------------------------------LAVITTLPSVVRLL 65
Query: 185 LKSGADINTANVDGLTALHQA---------------GA----DLNFQDYDGWTPLHAAAH 225
+ +GA + G TA H A A DL ++YDG T LH A +
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 226 WAQREACQILVENFCDMDVKN 246
+E Q+L+E D+D +
Sbjct: 126 TECQETVQLLLERGADIDAVD 146
Score = 62.1 bits (152), Expect = 8e-12
Identities = 26/146 (17%), Positives = 40/146 (27%), Gaps = 56/146 (38%)
Query: 125 INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNL 184
A+ DG T LH A + V L
Sbjct: 2 ATRADEDGDTPLH---------------------------------IAVVQGNLPAVHRL 28
Query: 185 L----KSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAH 225
+ + G +++ N T LH A GA D G T H A
Sbjct: 29 VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 88
Query: 226 WAQREACQILVEN----FCDMDVKNY 247
+ L+++ D++ +NY
Sbjct: 89 HRSPTCLRALLDSAAPGTLDLEARNY 114
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 93.7 bits (234), Expect = 2e-23
Identities = 38/220 (17%), Positives = 62/220 (28%), Gaps = 80/220 (36%)
Query: 50 ACASSDKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
AC ++ +V LL S + + + DG LH + +
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLH-----------------------WSVS 45
Query: 109 SSDKEEVLNLLKSGADINTANV---DGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSS 165
E LL ++N + G T H +GN
Sbjct: 46 FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI------------ACSVGNL-------- 85
Query: 166 GCVFLAACASSDKEEVLNLL---KSGADINTANVDGLTALHQA---------------GA 207
EV+ L D+N G+T LH A GA
Sbjct: 86 --------------EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 208 DLNFQDYDGWTPLHAAAHWAQREACQILVEN-FCDMDVKN 246
+ +D PLH AA + ++L ++ ++
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Score = 87.9 bits (219), Expect = 3e-21
Identities = 40/220 (18%), Positives = 64/220 (29%), Gaps = 80/220 (36%)
Query: 50 ACASSDKEEVLNLLKSGADINTANV---DGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
+ + E LL ++N + G T H +A
Sbjct: 43 SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH----------------------IAC 80
Query: 107 CASSDKEEVLNLL---KSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
S EV+ L D+N G+T LH
Sbjct: 81 --SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH-------------------------- 112
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA----------------GA 207
A E L+++GA + + LH+A +
Sbjct: 113 -------LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 208 DLNFQDYDGWTPLHAAAHWAQREACQILVENF-CDMDVKN 246
+N+QD GWTPL A +A +LVE + + D+ +
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 84.4 bits (210), Expect = 5e-20
Identities = 31/207 (14%), Positives = 51/207 (24%), Gaps = 79/207 (38%)
Query: 52 ASSDKEEVLNLL---KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
S EV+ L D+N G+T LH A
Sbjct: 80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH-----------------------LAVG 116
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
E L+++GA + + LH
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLH------------------------------- 145
Query: 169 FLAACASSDKEEVLNLLKSG-ADINTANVDGLTALHQA----------------GADLNF 211
A + + + L G + +N + G T L A GA+ +
Sbjct: 146 --RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Query: 212 QDYDGWTPLHAAAHWAQREACQILVEN 238
D G A + + + + N
Sbjct: 204 VDNKGAKAEDVALN---EQVKKFFLNN 227
Score = 80.6 bits (200), Expect = 1e-18
Identities = 35/177 (19%), Positives = 50/177 (28%), Gaps = 65/177 (36%)
Query: 91 PLHSLNCGPGCVFLAACASSDKEEVLNLLKS-GADINTANVDGLTALHQLKRWEESETNR 149
PLH AC ++ +V LL S + + + DG LH
Sbjct: 5 PLH-----------QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLH------------ 41
Query: 150 QPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANV---DGLTALHQA- 205
+ + E LL ++N + G T H A
Sbjct: 42 ---------------------WSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80
Query: 206 ----------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
DLN G T LH A E Q L+EN + +K+
Sbjct: 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137
Score = 45.1 bits (108), Expect = 6e-06
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 16/67 (23%)
Query: 198 GLTALHQA----------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCD 241
LHQA + L +D DG PLH + + E L+ +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 242 MDVKNYV 248
+++ +Y
Sbjct: 62 VNLDDYP 68
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 91.3 bits (227), Expect = 6e-23
Identities = 31/221 (14%), Positives = 56/221 (25%), Gaps = 69/221 (31%)
Query: 48 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAAC 107
AA E+ L L + G + + L+ L +
Sbjct: 11 SAAAMLGTYEDFLELFEKGYEDKESV-LKSNILY--------DVLRN-----------NN 50
Query: 108 ASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGC 167
+ + + L+ GADI + +G T L + G
Sbjct: 51 DEARYKISMFLINKGADIKSRTKEGTTLFFPL------------FQGGGN---------- 88
Query: 168 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------------- 205
+ E L+ GADI + +
Sbjct: 89 -----DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS 143
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G L +D G T L + A +++ + ++K
Sbjct: 144 GLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 29.3 bits (66), Expect = 0.89
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+ + AAA E L E +
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESV 36
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 91.0 bits (227), Expect = 6e-23
Identities = 33/208 (15%), Positives = 56/208 (26%), Gaps = 76/208 (36%)
Query: 47 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
+L + AD+ + + T
Sbjct: 18 YLIEWKDGHSPSWVPSSYIAADVVS---EYETPWW------------------------T 50
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSG 166
A E+ L+ L D++ + +G TAL
Sbjct: 51 AARKADEQALSQLLEDRDVDAVDENGRTALL----------------------------- 81
Query: 167 CVFLAACASSDKEEVLNLLKSGADINTANV-DGLTALHQA---------------GADLN 210
+ V L ++GAD++ ++ GLTALH A GAD+
Sbjct: 82 ----FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVEN 238
+D G T L A + ++
Sbjct: 138 VEDERGLTALELAREILKTTPKGNPMQF 165
Score = 77.9 bits (193), Expect = 6e-18
Identities = 30/199 (15%), Positives = 52/199 (26%), Gaps = 76/199 (38%)
Query: 64 KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGA 123
+ + +G + A
Sbjct: 2 VNKIIGSRTAGEGAMEYL-----------------------IEWKDGHSPSWVPSSYIAA 38
Query: 124 DINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLN 183
D+ + + T A E+ L+
Sbjct: 39 DVVS---EYETPWW----------------------------------TAARKADEQALS 61
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQD-YDGWTPLHAAAHWA 227
L D++ + +G TAL GADL+ +D G T LH AA +
Sbjct: 62 QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121
Query: 228 QREACQILVENFCDMDVKN 246
+ E + LVE D++V++
Sbjct: 122 RPEVVEALVELGADIEVED 140
Score = 70.2 bits (173), Expect = 4e-15
Identities = 36/188 (19%), Positives = 57/188 (30%), Gaps = 59/188 (31%)
Query: 52 ASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSD 111
A E+ L+ L D++ + +G TAL
Sbjct: 52 ARKADEQALSQLLEDRDVDAVDENGRTALL-----------------------FVAGLGS 88
Query: 112 KEEVLNLLKSGADINTANV-DGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFL 170
+ V L ++GAD++ ++ GLTALH
Sbjct: 89 DKCVRLLAEAGADLDHRDMRGGLTALH--------------------------------- 115
Query: 171 AACASSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQRE 230
A E V L++ GADI + GLTAL A ++ P+ +
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELA-REILKTT-PKGNPMQFGRRIGLEK 173
Query: 231 ACQILVEN 238
+L
Sbjct: 174 VINVLEGQ 181
Score = 37.9 bits (89), Expect = 0.001
Identities = 17/77 (22%), Positives = 22/77 (28%), Gaps = 23/77 (29%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A E V L++ GADI + GLTAL A
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALE-----------------------LAREI 153
Query: 110 SDKEEVLNLLKSGADIN 126
N ++ G I
Sbjct: 154 LKTTPKGNPMQFGRRIG 170
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 89.7 bits (224), Expect = 1e-22
Identities = 36/206 (17%), Positives = 63/206 (30%), Gaps = 75/206 (36%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A A D E++ +LL++ ++N N G TAL
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-------------------------VMK 46
Query: 110 SDKEEVLNLLKS-GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
E+ L GA+ + + G +H
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIH------------------------------- 75
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GA-DLNFQ 212
AA A + + LL+ AD+N + +G LH A A ++ +
Sbjct: 76 -DAARAGF-LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 213 DYDGWTPLHAAAHWAQREACQILVEN 238
++ G T A + + E ++ N
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 81.3 bits (202), Expect = 2e-19
Identities = 32/180 (17%), Positives = 51/180 (28%), Gaps = 74/180 (41%)
Query: 75 DGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLT 134
L +A A D E++ +LL++ ++N N G T
Sbjct: 4 PWGNELA-----------------------SAAARGDLEQLTSLLQNNVNVNAQNGFGRT 40
Query: 135 ALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKS-GADINT 193
AL E+ L GA+ +
Sbjct: 41 ALQ-----------------------------------VMKLGNPEIARRLLLRGANPDL 65
Query: 194 ANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
+ G +H A AD+N +D +G PLH AA + LV++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Score = 70.1 bits (173), Expect = 3e-15
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA--------------GADLNFQDYDGW 217
A A D E++ +LL++ ++N N G TAL GA+ + +D G+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGF 71
Query: 218 TPLHAAAHWAQREACQILVENFCDMDVKN 246
+H AA + Q L+E D+++++
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIED 100
Score = 46.2 bits (111), Expect = 1e-06
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 16/65 (24%)
Query: 197 DGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCD 241
L A ++N Q+ G T L E + L+ +
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62
Query: 242 MDVKN 246
D+K+
Sbjct: 63 PDLKD 67
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 91.1 bits (226), Expect = 2e-22
Identities = 45/220 (20%), Positives = 76/220 (34%), Gaps = 39/220 (17%)
Query: 43 SGCVFLAACASSDKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGC 101
S + S +E+ + + + + D TALH
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-------------------- 45
Query: 102 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKI 161
AC++ E V LL+ G +N + G + LH E + G +
Sbjct: 46 ---WACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 162 KFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------G 206
+ A + + E + LL+ GA+ + + TA+H+A
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162
Query: 207 ADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
A N QD +G TPLH A + E + LV + ++N
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Score = 76.4 bits (188), Expect = 6e-17
Identities = 46/210 (21%), Positives = 67/210 (31%), Gaps = 40/210 (19%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
AC++ E V LL+ G +N + G + LH A ++
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH-----------------------IAASA 83
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
E V LL GA +N N +G T LH E E G P
Sbjct: 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
A A + + V LL A N + +G T LH A GA + ++
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK 203
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDV 244
+ TPL A + + +
Sbjct: 204 EEKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 48.3 bits (115), Expect = 4e-07
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 15/67 (22%)
Query: 195 NVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENF 239
V + + A + D D T LH A E + L++
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 240 CDMDVKN 246
++ K+
Sbjct: 64 VPVNDKD 70
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 91.1 bits (227), Expect = 2e-22
Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 72/189 (38%)
Query: 74 VDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGL 133
+ G +L ++ ++ + G + N L
Sbjct: 3 ITGQVSLP-----------------------PGKRTNLRKTGSERIAHGMRVK-FNPLPL 38
Query: 134 TALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINT 193
L + + + V ++ D +
Sbjct: 39 ALLL---------------------------------DSSLEGEFDLVQRIIYEVDDPSL 65
Query: 194 ANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
N +G+TALH A G ++N D DGWTPLH AA + C+ LVE+
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 239 FCDMDVKNY 247
+ Y
Sbjct: 126 GAAVFAMTY 134
Score = 88.8 bits (221), Expect = 1e-21
Identities = 34/215 (15%), Positives = 56/215 (26%), Gaps = 75/215 (34%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
++ ++ + G + N L L +
Sbjct: 12 GKRTNLRKTGSERIAHGMRVK-FNPLPLALLL-----------------------DSSLE 47
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ + V ++ D + N +G+TALH
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALH-------------------------------- 75
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
A CA E V L++ G ++N A+ DG T LH A GA + Y
Sbjct: 76 NAVCAGH-TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 134
Query: 215 DG---WTPLHAAAHWAQREACQILVENFCDMDVKN 246
+ Q L M + N
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169
Score = 83.4 bits (207), Expect = 2e-19
Identities = 30/202 (14%), Positives = 54/202 (26%), Gaps = 74/202 (36%)
Query: 47 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
L + + + V ++ D + N +G+TALH A
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALH----------------------NAV 78
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSG 166
CA E V L++ G ++N A+ DG T LH
Sbjct: 79 CAGH-TEIVKFLVQFGVNVNAADSDGWTPLH----------------------------- 108
Query: 167 CVFLAACASSDKEEVLNLLKSGADINTANVDGL---TALHQA---------------GAD 208
A + ++ + L++SGA + + +
Sbjct: 109 ----CAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164
Query: 209 LNFQDYDGWTPLHAAAHWAQRE 230
+ + L E
Sbjct: 165 MGIMNKGVIYALWDYEPQNDDE 186
Score = 59.9 bits (146), Expect = 5e-11
Identities = 28/205 (13%), Positives = 48/205 (23%), Gaps = 85/205 (41%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + E V L++ G ++N A+ DG T LH A +
Sbjct: 77 AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH-----------------------CAASC 113
Query: 110 SDKEEVLNLLKSGADINTANV-DGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
++ + L++SGA + D TA
Sbjct: 114 NNVQVCKFLVESGAAVFAMTYSDMQTAAD------------------------------- 142
Query: 169 FLAACASSDKEEVLNLLKS-GADINTANVDGLTALHQA------------GADLN----- 210
+ L + N + AL G +
Sbjct: 143 -KCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHRE 201
Query: 211 -----------FQDYDGWTPLHAAA 224
D +G+ P +
Sbjct: 202 DEDEIEWWWARLNDKEGYVPRNLLG 226
Score = 34.1 bits (79), Expect = 0.023
Identities = 3/35 (8%), Positives = 8/35 (22%)
Query: 213 DYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
+ G L R+ + + +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL 36
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 91.8 bits (229), Expect = 3e-22
Identities = 42/221 (19%), Positives = 63/221 (28%), Gaps = 67/221 (30%)
Query: 49 AACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A + + L K GA++N A+ L A
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT--ALM-----------DAAE 157
Query: 109 SSDKE--EVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSG 166
E ++L L + GAD+N + G AL
Sbjct: 158 KGHVEVLKIL-LDEMGADVNACDNMGRNALI----------------------------- 187
Query: 167 CVFLAACASSD---KEEVLNLLKSGADINTANVDGLTALHQA----------------GA 207
A +S D + LL GAD+N G T L A
Sbjct: 188 ---HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 208 DLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYV 248
++N D DG T L A ++ ++L + D + V
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285
Score = 87.9 bits (219), Expect = 6e-21
Identities = 41/227 (18%), Positives = 63/227 (27%), Gaps = 86/227 (37%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A S ++ V LL+ GAD +G T A +
Sbjct: 46 AVQMSREDIVELLLRHGADPVLRKKNGATPFL-----------------------LAAIA 82
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ + L GAD+N + G TA
Sbjct: 83 GSVKLLKLFLSKGADVNECDFYGFTAFM-------------------------------- 110
Query: 170 LAACASSDKEEVLNLLKSGADINTAN----------VDGLTALHQA-------------- 205
A + + L K GA++N G TAL A
Sbjct: 111 -EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169
Query: 206 --GADLNFQDYDGWTPLHAAAHWAQREAC----QILVENFCDMDVKN 246
GAD+N D G L A + +L+++ D++V+
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216
Score = 84.1 bits (209), Expect = 2e-19
Identities = 43/218 (19%), Positives = 66/218 (30%), Gaps = 82/218 (37%)
Query: 47 FLAACASSDKEEVLNLLKSGADINTANVD-GLTALHQVSKSASTLPLHSLNCGPGCVFLA 105
+ A + D + V LL+ GA++N + G T LH
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLH-----------------------N 45
Query: 106 ACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSS 165
A S ++ V LL+ GAD +G T
Sbjct: 46 AVQMSREDIVELLLRHGADPVLRKKNGATPFL---------------------------- 77
Query: 166 GCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLN 210
A + + + L GAD+N + G TA +A GA++N
Sbjct: 78 -----LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
Query: 211 FQD----------YDGWTPLHAAAHWAQREACQILVEN 238
+ G T L AA E +IL++
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170
Score = 84.1 bits (209), Expect = 2e-19
Identities = 43/220 (19%), Positives = 60/220 (27%), Gaps = 88/220 (40%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + + + L GAD+N + G TA A
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFM-----------------------EAAVY 115
Query: 110 SDKEEVLNLLKSGADINTAN----------VDGLTALHQLKRWEESETNRQPSEMGNKPK 159
+ + L K GA++N G TAL
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM---------------------- 153
Query: 160 KIKFSSGCVFLAACASSDKE--EVLNLLKSGADINTANVDGLTALHQA------------ 205
A E ++L L + GAD+N + G AL A
Sbjct: 154 -----------DAAEKGHVEVLKIL-LDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201
Query: 206 -------GADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
GAD+N + G TPL A Q L+E
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Score = 82.9 bits (206), Expect = 6e-19
Identities = 37/191 (19%), Positives = 61/191 (31%), Gaps = 72/191 (37%)
Query: 72 ANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVD 131
A V+ L A + D + V LL+ GA++N +
Sbjct: 1 AAVEDNHLLI-----------------------KAVQNEDVDLVQQLLEGGANVNFQEEE 37
Query: 132 -GLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGAD 190
G T LH A S ++ V LL+ GAD
Sbjct: 38 GGWTPLH---------------------------------NAVQMSREDIVELLLRHGAD 64
Query: 191 INTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQIL 235
+G T A GAD+N D+ G+T AA + + +A + L
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 236 VENFCDMDVKN 246
+ +++++
Sbjct: 125 YKRGANVNLRR 135
Score = 49.4 bits (119), Expect = 3e-07
Identities = 23/94 (24%), Positives = 29/94 (30%), Gaps = 27/94 (28%)
Query: 48 LAACASSD---KEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFL 104
A +S D + LL GAD+N G T L
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI----------------------- 224
Query: 105 AACASSDKEEVLNLL-KSGADINTANVDGLTALH 137
A V LL + +IN + DG TAL
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 90.7 bits (226), Expect = 4e-22
Identities = 33/218 (15%), Positives = 60/218 (27%), Gaps = 76/218 (34%)
Query: 47 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
+L + AD+ + + T
Sbjct: 19 YLIEWKDGHSPSWVPSSYIAADVVS---EYETPWW------------------------T 51
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSG 166
A E+ L+ L D++ + +G TAL
Sbjct: 52 AARKADEQALSQLLEDRDVDAVDENGRTALL----------------------------- 82
Query: 167 CVFLAACASSDKEEVLNLLKSGADINTANV-DGLTALHQA---------------GADLN 210
+ V L ++GAD++ ++ GLTALH A GAD+
Sbjct: 83 ----FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138
Query: 211 FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNYV 248
+D G T L A + ++ + ++ +
Sbjct: 139 VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI 176
Score = 73.8 bits (182), Expect = 6e-16
Identities = 40/213 (18%), Positives = 64/213 (30%), Gaps = 75/213 (35%)
Query: 52 ASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSD 111
A E+ L+ L D++ + +G TAL
Sbjct: 53 ARKADEQALSQLLEDRDVDAVDENGRTALL-----------------------FVAGLGS 89
Query: 112 KEEVLNLLKSGADINTANV-DGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFL 170
+ V L ++GAD++ ++ GLTALH
Sbjct: 90 DKCVRLLAEAGADLDHRDMRGGLTALH--------------------------------- 116
Query: 171 AACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYD 215
A E V L++ GADI + GLTAL A G + +
Sbjct: 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK-- 174
Query: 216 GWTPLHAAAHWAQREACQILVENFCDMDVKNYV 248
+ + E +I+ + DV+ V
Sbjct: 175 -VINVLEGQVFEYAEVDEIVEKRGKGKDVEYLV 206
Score = 70.3 bits (173), Expect = 1e-14
Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 61/203 (30%)
Query: 50 ACASSDKEEVLNLLKSGADINTANV-DGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
+ V L ++GAD++ ++ GLTALH A
Sbjct: 84 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH-----------------------MAAG 120
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
E V L++ GADI + GLTAL
Sbjct: 121 YVRPEVVEALVELGADIEVEDERGLTALE------------------------------- 149
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLT----ALHQAGADLNFQDYDGWTPLHAAA 224
A N ++ G I V + + ++ + G +
Sbjct: 150 --LAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVR 207
Query: 225 HWAQREACQILVENFCDMDVKNY 247
+ + + + K+Y
Sbjct: 208 WKDGGDCEWVKGVHVAEDVAKDY 230
Score = 49.9 bits (120), Expect = 1e-07
Identities = 26/155 (16%), Positives = 39/155 (25%), Gaps = 37/155 (23%)
Query: 52 ASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASS 110
A + EV+ L++ GADI + GLTAL A
Sbjct: 119 AGYVRPEVVEALVELGADIEVEDERGLTALE-----------------------LAREIL 155
Query: 111 DKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFL 170
N ++ G I V + + E E +K +L
Sbjct: 156 KTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIV----------EKRGKGKDVEYL 205
Query: 171 AACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
+ A+ D L A
Sbjct: 206 VRWKDG-GDCEWVKGVHVAEDVAK--DYEDGLEYA 237
Score = 35.7 bits (83), Expect = 0.007
Identities = 10/88 (11%), Positives = 18/88 (20%), Gaps = 3/88 (3%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A N ++ G I V + + + G +L
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD 210
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALH 137
+ A+ D L
Sbjct: 211 G-GDCEWVKGVHVAEDVAK--DYEDGLE 235
Score = 27.2 bits (61), Expect = 4.3
Identities = 3/49 (6%), Positives = 8/49 (16%), Gaps = 4/49 (8%)
Query: 198 GLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G + +G + D+ +
Sbjct: 1 GEVNKIIG----SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY 45
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 88.6 bits (221), Expect = 6e-22
Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 71/203 (34%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
AC + + L+++ + +++G TAL A +
Sbjct: 42 ACMLGMENAIDKLVENFDKLEDKDIEGSTALI-----------------------WAVKN 78
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ LL G+++NT + G T L
Sbjct: 79 NRLGIAEKLLSKGSNVNTKDFSGKTPLMW------------------------------- 107
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
+ E LL+ GA++N N++G T L A GAD++ +D
Sbjct: 108 --SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
Query: 215 DGWTPLHAAAHWAQREACQILVE 237
G T +A + ++E +I E
Sbjct: 166 TGLTAEASARIFGRQEVIKIFTE 188
Score = 84.0 bits (209), Expect = 4e-20
Identities = 34/219 (15%), Positives = 67/219 (30%), Gaps = 78/219 (35%)
Query: 50 ACASSDKEEVL-----NLLKSGAD--INTANVDGLTALHQVSKSASTLPLHSLNCGPGCV 102
+ + E V + D N + T L
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLM--------------------- 40
Query: 103 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIK 162
AC + + L+++ + +++G TAL
Sbjct: 41 --VACMLGMENAIDKLVENFDKLEDKDIEGSTALI------------------------- 73
Query: 163 FSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GA 207
A ++ LL G+++NT + G T L + GA
Sbjct: 74 --------WAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Query: 208 DLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
++N ++ +G TPL A+ + + E + L+E D+ ++
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 89.5 bits (223), Expect = 7e-22
Identities = 43/211 (20%), Positives = 58/211 (27%), Gaps = 78/211 (36%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A ++ E LL +G D + G T LH AC
Sbjct: 52 AVITNQPEIAEALLGAGCDPELRDFRGNTPLH-----------------------LACEQ 88
Query: 110 SDKEEVLNLLKSGAD------INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
V L +S + N +G T LH
Sbjct: 89 GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH-------------------------- 122
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTA-NVDGLTALHQA---------------GA 207
LA+ V L+ GAD+N +G TALH A GA
Sbjct: 123 ------LASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175
Query: 208 DLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
D+N Y G++P Q L +
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206
Score = 89.5 bits (223), Expect = 9e-22
Identities = 43/214 (20%), Positives = 62/214 (28%), Gaps = 79/214 (36%)
Query: 57 EEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEV 115
EV+ +K A +N N T LH A ++ E
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLH-----------------------LAVITNQPEIA 61
Query: 116 LNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACAS 175
LL +G D + G T LH AC
Sbjct: 62 EALLGAGCDPELRDFRGNTPLH---------------------------------LACEQ 88
Query: 176 SDKEEVLNLLKSGAD------INTANVDGLTALHQA---------------GADLNFQD- 213
V L +S + N +G T LH A GAD+N Q+
Sbjct: 89 GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP 148
Query: 214 YDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
+G T LH A + +L++ D++ Y
Sbjct: 149 CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY 182
Score = 75.7 bits (187), Expect = 1e-16
Identities = 34/198 (17%), Positives = 51/198 (25%), Gaps = 79/198 (39%)
Query: 73 NVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA---CASSDKEEVLNLLKSGADINTAN 129
DG + LH LA + E + + A +N N
Sbjct: 5 TEDGDSFLH----------------------LAIIHEEKALTMEVIRQVKGDLAFLNFQN 42
Query: 130 VDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGA 189
T LH A ++ E LL +G
Sbjct: 43 NLQQTPLH---------------------------------LAVITNQPEIAEALLGAGC 69
Query: 190 DINTANVDGLTALHQA---------------GAD------LNFQDYDGWTPLHAAAHWAQ 228
D + G T LH A L +Y+G T LH A+
Sbjct: 70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129
Query: 229 REACQILVENFCDMDVKN 246
++LV D++ +
Sbjct: 130 LGIVELLVSLGADVNAQE 147
Score = 67.6 bits (166), Expect = 9e-14
Identities = 33/198 (16%), Positives = 46/198 (23%), Gaps = 78/198 (39%)
Query: 50 ACASSDKEEVLNLLKSGAD------INTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
AC V L +S + N +G T LH
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH---------------------- 122
Query: 104 LAACASSDKEEVLNLLKSGADINTA-NVDGLTALHQLKRWEESETNRQPSEMGNKPKKIK 162
LA+ V L+ GAD+N +G TALH
Sbjct: 123 LASIHGY-LGIVELLVSLGADVNAQEPCNGRTALH------------------------- 156
Query: 163 FSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GA 207
A + + V LLK GAD+N G +
Sbjct: 157 --------LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208
Query: 208 DLNFQDYDGWTPLHAAAH 225
+ +
Sbjct: 209 ENLQMLPESEDEESYDTE 226
Score = 61.8 bits (151), Expect = 9e-12
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 16/86 (18%)
Query: 179 EEVLNLLKS-GADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHA 222
EV+ +K A +N N T LH A G D +D+ G TPLH
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84
Query: 223 AAHWAQREACQILVENFCDMDVKNYV 248
A + +L ++ + + +
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSIL 110
Score = 55.2 bits (134), Expect = 2e-09
Identities = 23/160 (14%), Positives = 33/160 (20%), Gaps = 57/160 (35%)
Query: 50 ACASSDKEEVLNLLKSGADINTA-NVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A V L+ GAD+N +G TALH A
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALH-----------------------LAVD 160
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ + V LLK GAD+N G +
Sbjct: 161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQL------------------------------ 190
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQAGAD 208
L + + +
Sbjct: 191 ---TWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227
Score = 34.8 bits (81), Expect = 0.015
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 212 QDYDGWTPLHAAAH----WAQREACQILVENFCDMDVKN 246
DG + LH A E + + + ++ +N
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN 42
Score = 27.1 bits (61), Expect = 4.9
Identities = 3/40 (7%), Positives = 8/40 (20%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSAST 89
L + + + ++S T
Sbjct: 191 TWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 87.4 bits (218), Expect = 7e-22
Identities = 40/201 (19%), Positives = 58/201 (28%), Gaps = 72/201 (35%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + +EV L+ +GA T G + LH LAA
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDW-LGTSPLH----------------------LAAQYG 45
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
LL++G + T LH
Sbjct: 46 H-FSTTEVLLRAGVSRDARTKVDRTPLH-------------------------------- 72
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDY 214
A + V LLK GAD+N ++ +TALH A GAD++ Q
Sbjct: 73 -MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Query: 215 DGWTPLHAAAHWAQREACQIL 235
T + + +IL
Sbjct: 132 FCKTAFDISIDNGNEDLAEIL 152
Score = 77.8 bits (193), Expect = 3e-18
Identities = 34/187 (18%), Positives = 52/187 (27%), Gaps = 72/187 (38%)
Query: 75 DGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLT 134
D L A + +EV L+ +GA T G +
Sbjct: 1 DLGKKLL-----------------------EAARAGQDDEVRILMANGAPFTTDW-LGTS 36
Query: 135 ALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTA 194
LH LAA LL++G +
Sbjct: 37 PLH--------------------------------LAAQYGH-FSTTEVLLRAGVSRDAR 63
Query: 195 NVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENF 239
T LH A GAD+N +D T LH A +E ++L++
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Query: 240 CDMDVKN 246
D+ ++
Sbjct: 124 ADVHTQS 130
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 87.8 bits (219), Expect = 7e-22
Identities = 41/205 (20%), Positives = 59/205 (28%), Gaps = 73/205 (35%)
Query: 50 ACASSDKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A + D E V L + T LH A
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-----------------------FAAG 51
Query: 109 SSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ V LL+ GAD++ + GL LH
Sbjct: 52 YNRVSVVEYLLQHGADVHAKDKGGLVPLH------------------------------- 80
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
AC+ E L+K GA +N A++ T LH+A GAD ++
Sbjct: 81 --NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
Query: 214 YDGWTPLHAAAHWAQREACQILVEN 238
DG TPL + +L +
Sbjct: 139 RDGNTPLDLVKD-GDTDIQDLLRGD 162
Score = 82.1 bits (204), Expect = 9e-20
Identities = 40/197 (20%), Positives = 57/197 (28%), Gaps = 75/197 (38%)
Query: 66 GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS-GAD 124
GA N+ + L A + D E V L +
Sbjct: 1 GAMGNS---EADRQLL-----------------------EAAKAGDVETVKKLCTVQSVN 34
Query: 125 INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNL 184
T LH A + V L
Sbjct: 35 CRDIEGRQSTPLH---------------------------------FAAGYNRVSVVEYL 61
Query: 185 LKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQR 229
L+ GAD++ + GL LH A GA +N D +TPLH AA +
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121
Query: 230 EACQILVENFCDMDVKN 246
E C++L+++ D KN
Sbjct: 122 EICKLLLQHGADPTKKN 138
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 91.2 bits (227), Expect = 2e-21
Identities = 42/227 (18%), Positives = 69/227 (30%), Gaps = 86/227 (37%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + + V L+K+GAD N +ALH A+
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALH------------------------QAAA 208
Query: 110 SDKEEVLNLL----KSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSS 165
+ ++ + K DI + +G+TAL
Sbjct: 209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALM---------------------------- 240
Query: 166 GCVFLAA-CASSDKEEVLNLLKS-GADINTA--------NVDGLTALHQA---------- 205
+ A D+ LL GA ++ G TALH A
Sbjct: 241 ----IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK 296
Query: 206 ------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G++ + QD DG TP+ AA + E L++ ++ +
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD 343
Score = 86.9 bits (216), Expect = 4e-20
Identities = 35/205 (17%), Positives = 55/205 (26%), Gaps = 67/205 (32%)
Query: 48 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAAC 107
L A+ + + +I T LH ++ + +
Sbjct: 98 LHTEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASN-------------SSAEKSED 143
Query: 108 ASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGC 167
E + +GAD+N + D T L
Sbjct: 144 LIV--HEAKECIAAGADVNAMDCDENTPLM------------------------------ 171
Query: 168 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA------------------GADL 209
A + + V L+K+GAD N +ALHQA D+
Sbjct: 172 ---LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228
Query: 210 NFQDYDGWTPLHAAAHWAQREACQI 234
D +G T L AH R+
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVAS 253
Score = 86.5 bits (215), Expect = 6e-20
Identities = 24/216 (11%), Positives = 51/216 (23%), Gaps = 70/216 (32%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
+ + + + LH +
Sbjct: 68 GYGNGNDFLGDFNHTNLQIPTEPEPESPIKLH-------------------------TEA 102
Query: 110 SDKEEVLN-LLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCV 168
+ + + + +I T LH + + + +K +
Sbjct: 103 AGSYAITEPITRESVNIIDPR-HNRTVLHWI------------ASNSSA-EKSEDLI--- 145
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQD 213
E + +GAD+N + D T L A GAD +
Sbjct: 146 ---------VHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196
Query: 214 YDGWTPLHAAAHWAQREACQILVENFC---DMDVKN 246
+ LH AA ++ + D++ +
Sbjct: 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232
Score = 83.5 bits (207), Expect = 7e-19
Identities = 40/221 (18%), Positives = 66/221 (29%), Gaps = 88/221 (39%)
Query: 57 EEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVL 116
E + +GAD+N + D T L A + + V
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLM-----------------------LAVLARRRRLVA 183
Query: 117 NLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASS 176
L+K+GAD N +ALH A++
Sbjct: 184 YLMKAGADPTIYNKSERSALH----------------------------------QAAAN 209
Query: 177 DKEEVLNLL----KSGADINTANVDGLTALHQA------------------GADLNF--- 211
++ + K DI + +G+TAL GA +++
Sbjct: 210 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269
Query: 212 -----QDYDGWTPLHAAAHWAQREACQILV-ENFCDMDVKN 246
+ Y G T LH AA + + LV E + D ++
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 310
Score = 80.4 bits (199), Expect = 1e-17
Identities = 33/222 (14%), Positives = 57/222 (25%), Gaps = 85/222 (38%)
Query: 52 ASSDKEEVLNLL----KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAAC 107
A++ ++ + K DI + +G+TAL V+ +
Sbjct: 207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR------------------ 248
Query: 108 ASSDKEEVLNLLKS-GADINTA--------NVDGLTALHQLKRWEESETNRQPSEMGNKP 158
D+ LL GA ++ G TALH
Sbjct: 249 ---DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH--------------------- 284
Query: 159 KKIKFSSGCVFLAACASSDKEEVLNLL--KSGADINTANVDGLTALHQA----------- 205
AA ++ L + G++ + + DG T + A
Sbjct: 285 -----------YAAQ--VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 331
Query: 206 ----GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMD 243
GA + D T A I + +
Sbjct: 332 LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 77.3 bits (191), Expect = 1e-16
Identities = 22/208 (10%), Positives = 45/208 (21%), Gaps = 61/208 (29%)
Query: 64 KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS-G 122
+ + + +L + S + + + + + +
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNL 84
Query: 123 ADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVL 182
+ LH ++ +
Sbjct: 85 QIPTEPEPESPIKLH-----------------------------------TEAAGSYAIT 109
Query: 183 N-LLKSGADINTANVDGLTALHQA-----------------------GADLNFQDYDGWT 218
+ + +I T LH GAD+N D D T
Sbjct: 110 EPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168
Query: 219 PLHAAAHWAQREACQILVENFCDMDVKN 246
PL A +R L++ D + N
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGADPTIYN 196
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 85.2 bits (212), Expect = 5e-21
Identities = 35/201 (17%), Positives = 50/201 (24%), Gaps = 77/201 (38%)
Query: 63 LKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSG 122
++ A + L A A EEV LL++G
Sbjct: 1 MEPAAGSSME--PSADWLA-----------------------TAAARGRVEEVRALLEAG 35
Query: 123 ADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVL 182
A+ N N G + V
Sbjct: 36 ANPNAPNSYGRRPIQ-----------------------------------VMMMGSARVA 60
Query: 183 N-LLKSGADINTANVDGLT-ALHQA---------------GADLNFQDYDGWTPLHAAAH 225
LL GA+ N A+ LT +H A GA L+ +D G P+ A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
Query: 226 WAQREACQILVENFCDMDVKN 246
R+ + L N
Sbjct: 121 LGHRDVARYLRAAAGGTRGSN 141
Score = 72.1 bits (178), Expect = 4e-16
Identities = 30/193 (15%), Positives = 46/193 (23%), Gaps = 80/193 (41%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A A EEV LL++GA+ N N G +
Sbjct: 19 AAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-------------------------VMM 53
Query: 110 SDKEEVLN-LLKSGADINTANVDGLT-ALHQLKRWEESETNRQPSEMGNKPKKIKFSSGC 167
V LL GA+ N A+ LT +H
Sbjct: 54 MGSARVAELLLLHGAEPNCADPATLTRPVH------------------------------ 83
Query: 168 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQ 212
A + ++ L ++GA ++ + G + A
Sbjct: 84 ---DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-- 138
Query: 213 DYDGWTPLHAAAH 225
G A
Sbjct: 139 ---GSNHARIDAA 148
Score = 54.4 bits (132), Expect = 1e-09
Identities = 20/154 (12%), Positives = 37/154 (24%), Gaps = 56/154 (36%)
Query: 51 CASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
V LL GA+ N A+ LT P+H A
Sbjct: 51 VMMMGSARVAELLLLHGAEPNCADPATLTR-----------PVH-----------DAARE 88
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
+ ++ L ++GA ++ + G +
Sbjct: 89 GFLDTLVVLHRAGARLDVRDAWGRLPVD-------------------------------- 116
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALH 203
A ++ L + +N + A
Sbjct: 117 -LAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 86.0 bits (214), Expect = 9e-21
Identities = 42/222 (18%), Positives = 69/222 (31%), Gaps = 79/222 (35%)
Query: 48 LAACASSDKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
L A D ++V +L+ ++ + +G T L+ A
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-----------------------IA 46
Query: 107 CASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSG 166
++D E L+ GADIN N +
Sbjct: 47 VHNNDIEIAKALIDRGADINLQNSISDSPYL----------------------------- 77
Query: 167 CVFLAACASSDKEEVLNLLKSGA-DINTANVDGLTALHQA----------------GADL 209
A A E + +LK D+N N G AL A D+
Sbjct: 78 ----YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI 133
Query: 210 NFQDYDGWTPLHAAAHWAQR-----EACQILVENFCDMDVKN 246
+FQ+ G+T L A + + ++L+EN D +K+
Sbjct: 134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD 175
Score = 81.3 bits (202), Expect = 4e-19
Identities = 41/198 (20%), Positives = 55/198 (27%), Gaps = 78/198 (39%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
L+ GADIN N + A A E + +LK
Sbjct: 58 LIDRGADINLQNSISDSPYL-----------------------YAGAQGRTEILAYMLKH 94
Query: 122 GA-DINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEE 180
D+N N G AL A +
Sbjct: 95 ATPDLNKHNRYGGNALI---------------------------------PAAEKGHIDN 121
Query: 181 VLNLLKSG-ADINTANVDGLTALHQA--------------------GADLNFQDYDGWTP 219
V LL+ G DI+ N G TAL +A GAD + +D G T
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTA 181
Query: 220 LHAAAHWAQREACQILVE 237
+ A E +IL +
Sbjct: 182 MDYANQKGYTEISKILAQ 199
Score = 48.2 bits (116), Expect = 4e-07
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 15/67 (22%)
Query: 195 NVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENF 239
+ L A ++ D +G TPL+ A H E + L++
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 240 CDMDVKN 246
D++++N
Sbjct: 63 ADINLQN 69
Score = 47.8 bits (115), Expect = 5e-07
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 20/88 (22%)
Query: 52 ASSDKEEVLNLL--KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + + LL DI+ N G TAL + L+
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY---------------- 157
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALH 137
++ V L+++GAD + + G TA+
Sbjct: 158 --QDIVKLLMENGADQSIKDNSGRTAMD 183
Score = 37.4 bits (88), Expect = 0.002
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 212 QDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+ Y+ L AA ++ +IL + +D +
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVD 36
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 87.6 bits (218), Expect = 2e-20
Identities = 31/203 (15%), Positives = 53/203 (26%), Gaps = 78/203 (38%)
Query: 66 GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS-GAD 124
+ + G TALH + E++ +L GA
Sbjct: 128 EIGSHVKHCKGQTALH----------------------WCVGLGPEYLEMIKILVQLGAS 165
Query: 125 INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNL 184
+ T L A E L+L
Sbjct: 166 PTAKDKADETPLM--------------------------------RAM--EFRNREALDL 191
Query: 185 L------KSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAA 223
+ KS ++ AN G + LH A G D+N +D + PL+ +
Sbjct: 192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251
Query: 224 AHWAQREACQILVENFCDMDVKN 246
A + L++ ++
Sbjct: 252 VRAAMVLLTKELLQKTDVFLIQA 274
Score = 86.8 bits (216), Expect = 4e-20
Identities = 29/207 (14%), Positives = 57/207 (27%), Gaps = 59/207 (28%)
Query: 52 ASSDKEEVLNLL------KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLA 105
E L+L+ KS ++ AN G + LH
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-----------------------W 217
Query: 106 ACASSDKEEVLNLLKSGADINTANVDGLTALHQ-------------LKRWEESETNRQPS 152
A + ++ + ++ G D+N + + L+ L++ + P
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPY 277
Query: 153 EMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKS-GADINTANVDGLTALHQA------ 205
G F+ A A K+EVL LL+ ++ + G +
Sbjct: 278 HNGTTVLP-DRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAP 336
Query: 206 ---------GADLNFQDYDGWTPLHAA 223
A + + +
Sbjct: 337 AVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 86.5 bits (215), Expect = 7e-20
Identities = 39/245 (15%), Positives = 65/245 (26%), Gaps = 78/245 (31%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A +EV L+++G N G T LH AC
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQNRFGCT------------ALH-----------LACKF 63
Query: 110 SDKEEVLNLLKSGADINT-------------------------ANVDGLTALHQLKRWEE 144
+ L G + A G L +E
Sbjct: 64 GCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE 123
Query: 145 SETNRQPSEMGNKPKKIKFSSGC--VFLAACASSDKEEVLNLLKS-GADINTANVDGLTA 201
E N E+G +K G + + E++ +L GA + T
Sbjct: 124 REVN----EIG---SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETP 176
Query: 202 LHQA--------------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCD 241
L +A L++ + G + LH A + VE D
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236
Query: 242 MDVKN 246
+++++
Sbjct: 237 VNMED 241
Score = 82.6 bits (205), Expect = 1e-18
Identities = 30/234 (12%), Positives = 59/234 (25%), Gaps = 92/234 (39%)
Query: 48 LAACASSDKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
+ E++ +L GA + T L A
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLM----------------------RAM 181
Query: 107 CASSDKEEVLNLL------KSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKK 160
E L+L+ KS ++ AN G + LH
Sbjct: 182 --EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH----------------------- 216
Query: 161 IKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA--------------- 205
A + ++ + ++ G D+N + + L+ +
Sbjct: 217 ----------WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266
Query: 206 -------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G + + AAA +++E Q+L E ++
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSL 320
Score = 71.8 bits (177), Expect = 9e-15
Identities = 24/189 (12%), Positives = 40/189 (21%), Gaps = 79/189 (41%)
Query: 64 KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGA 123
+ ++ + + +H A +EV L+++G
Sbjct: 8 FPKLNRIKSDDENMEKIH-----------------------VAARKGQTDEVRRLIETGV 44
Query: 124 DINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLN 183
N G TALH AC +
Sbjct: 45 SPTIQNRFGCTALH---------------------------------LACKFGCVDTAKY 71
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
L G + G +H A + G P +
Sbjct: 72 LASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDE 123
Query: 229 REACQILVE 237
RE +I
Sbjct: 124 REVNEIGSH 132
Score = 71.4 bits (176), Expect = 1e-14
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 50/134 (37%)
Query: 120 KSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKE 179
+ ++ + + +H A +
Sbjct: 8 FPKLNRIKSDDENMEKIH---------------------------------VAARKGQTD 34
Query: 180 EVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAA 224
EV L+++G N G TALH A G + + G P+H A
Sbjct: 35 EVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAV 92
Query: 225 HWAQREACQILVEN 238
+ + LVE
Sbjct: 93 MANKTDLVVALVEG 106
Score = 59.9 bits (146), Expect = 1e-10
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 15/76 (19%)
Query: 186 KSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQRE 230
+ ++ + + +H A G Q+ G T LH A + +
Sbjct: 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD 67
Query: 231 ACQILVENFCDMDVKN 246
+ L + +
Sbjct: 68 TAKYLASVGEVHSLWH 83
Score = 52.2 bits (126), Expect = 4e-08
Identities = 13/100 (13%), Positives = 23/100 (23%), Gaps = 24/100 (24%)
Query: 39 IKFSSGCVFLAACASSDKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNC 97
F+ A A K+EVL LL+ ++ + G
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAV---------------- 328
Query: 98 GPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALH 137
+ L A + T + +
Sbjct: 329 -------KRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSA 361
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 84.6 bits (210), Expect = 5e-20
Identities = 37/222 (16%), Positives = 59/222 (26%), Gaps = 90/222 (40%)
Query: 50 ACASSDKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
A +D + + LLK G +++ G TALH A
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRGAMGETALH-----------------------IAAL 46
Query: 109 SSDKEEVLNLLKSGADI-----NTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
+ E + L+++ ++ + +G TALH
Sbjct: 47 YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH-------------------------- 80
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVD-------------GLTALHQA----- 205
+A + V LL GA ++ G L A
Sbjct: 81 ------IAVINQN-VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 206 ----------GADLNFQDYDGWTPLHAAAHWAQREACQILVE 237
GAD+ QD G T LH + +
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175
Score = 76.9 bits (190), Expect = 4e-17
Identities = 36/228 (15%), Positives = 62/228 (27%), Gaps = 73/228 (32%)
Query: 50 ACASSDKEEVLNLLKSGADI-----NTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFL 104
A + E + L+++ ++ + +G TALH +
Sbjct: 44 AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH----------------------I 81
Query: 105 AACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFS 164
A + V LL GA ++ + E
Sbjct: 82 AVINQN-VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH----------------- 123
Query: 165 SGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA------------------- 205
+ AAC S +E V L++ GADI + G T LH
Sbjct: 124 --PLSFAACVGS-EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180
Query: 206 GADLN------FQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
+ + G TP A Q L++ + ++
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHH 228
Score = 68.8 bits (169), Expect = 3e-14
Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 67/176 (38%)
Query: 106 ACASSDKEEVLNLLKS-GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFS 164
A +D + + LLK G +++ G TALH
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRGAMGETALH--------------------------- 42
Query: 165 SGCVFLAACASSDKEEVLNLLKSGADI-----NTANVDGLTALHQA-------------- 205
A + E + L+++ ++ + +G TALH A
Sbjct: 43 ------IAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 206 -GADLNFQD-------------YDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
GA ++ + Y G PL AA E ++L+E+ D+ ++
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152
Score = 44.9 bits (107), Expect = 6e-06
Identities = 26/161 (16%), Positives = 37/161 (22%), Gaps = 67/161 (41%)
Query: 48 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAAC 107
AAC S +E V L++ GADI + G T LH
Sbjct: 127 FAACVGS-EEIVRLLIEHGADIRAQDSLGNTVLH-----------------------ILI 162
Query: 108 ASSDKEEVLN----LLKSGADIN------TANVDGLTALHQLKRWEESETNRQPSEMGNK 157
+K LL + N GLT
Sbjct: 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK-------------------- 202
Query: 158 PKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDG 198
A + +L++ I A+
Sbjct: 203 -------------LAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 44.5 bits (106), Expect = 9e-06
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 16/57 (28%)
Query: 198 GLTALHQA----------------GADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
+ L A G +++ + G T LH AA + EA +L+E
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA 59
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 80.5 bits (200), Expect = 2e-19
Identities = 46/181 (25%), Positives = 66/181 (36%), Gaps = 75/181 (41%)
Query: 75 DGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLT 134
+G T LH A + E V LL++GAD+N + +G T
Sbjct: 1 NGRTPLH-----------------------LAARNGHLEVVKLLLEAGADVNAKDKNGRT 37
Query: 135 ALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSD--KEEVLNLLKSGADIN 192
LH A+ + E V LL++GAD+N
Sbjct: 38 PLH-----------------------------------LAARNGHLEVVKLLLEAGADVN 62
Query: 193 TANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVE 237
+ +G T LH A GAD+N +D +G TPLH AA E ++L+E
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 238 N 238
Sbjct: 123 A 123
Score = 68.9 bits (170), Expect = 4e-15
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 15/90 (16%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDG 216
A + E V LL++GAD+N + +G T LH A GAD+N +D +G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 217 WTPLHAAAHWAQREACQILVENFCDMDVKN 246
TPLH AA E ++L+E D++ K+
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Score = 50.8 bits (123), Expect = 1e-08
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 23/76 (30%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKS 121
LL++GAD+N + +G T LH A + E V LL++
Sbjct: 54 LLEAGADVNAKDKNGRTPLH-----------------------LAARNGHLEVVKLLLEA 90
Query: 122 GADINTANVDGLTALH 137
GAD+N + +G T LH
Sbjct: 91 GADVNAKDKNGRTPLH 106
Score = 49.3 bits (119), Expect = 5e-08
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 15/65 (23%)
Query: 197 DGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCD 241
+G T LH A GAD+N +D +G TPLH AA E ++L+E D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 242 MDVKN 246
++ K+
Sbjct: 61 VNAKD 65
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 79.7 bits (198), Expect = 4e-19
Identities = 43/188 (22%), Positives = 60/188 (31%), Gaps = 72/188 (38%)
Query: 66 GADINTAN-VDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGAD 124
G+ + + D L AA A +EV L+ +GAD
Sbjct: 3 GSHHHHHHGSDLGKKLL----------------------EAARAGQ-DDEVRILMANGAD 39
Query: 125 INTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNL 184
+N + GLT L+ A A E V L
Sbjct: 40 VNAKDEYGLTPLY---------------------------------LATAHGHLEIVEVL 66
Query: 185 LKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQR 229
LK+GAD+N + G T LH A GAD+N QD G T +
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Query: 230 EACQILVE 237
+ +IL +
Sbjct: 127 DLAEILQK 134
Score = 67.0 bits (165), Expect = 2e-14
Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 49/141 (34%)
Query: 122 GADINTAN-VDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEE 180
G+ + + D L AA A +E
Sbjct: 3 GSHHHHHHGSDLGKKLL--------------------------------EAARAGQ-DDE 29
Query: 181 VLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAH 225
V L+ +GAD+N + GLT L+ A GAD+N D G+TPLH AA
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 226 WAQREACQILVENFCDMDVKN 246
E ++L+++ D++ ++
Sbjct: 90 IGHLEIAEVLLKHGADVNAQD 110
Score = 50.1 bits (121), Expect = 3e-08
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 23/88 (26%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A A E V LLK+GAD+N + G T LH LAA
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH----------------------LAAFIG 91
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALH 137
E LLK GAD+N + G TA
Sbjct: 92 H-LEIAEVLLKHGADVNAQDKFGKTAFD 118
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 77.0 bits (191), Expect = 2e-18
Identities = 40/171 (23%), Positives = 50/171 (29%), Gaps = 73/171 (42%)
Query: 66 GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADI 125
G + DG T LH A + EEV LL GAD+
Sbjct: 1 GHMWG--SKDGNTPLH-----------------------NAAKNGHAEEVKKLLSKGADV 35
Query: 126 NTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLL 185
N + DG T LH A + E V LL
Sbjct: 36 NARSKDGNTPLH---------------------------------LAAKNGHAEIVKLLL 62
Query: 186 KSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLH 221
GAD+N + DG T H A GAD+N + + H
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 73.2 bits (181), Expect = 8e-17
Identities = 35/141 (24%), Positives = 48/141 (34%), Gaps = 50/141 (35%)
Query: 122 GADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEV 181
G + DG T LH A + EEV
Sbjct: 1 GHMWG--SKDGNTPLH---------------------------------NAAKNGHAEEV 25
Query: 182 LNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHW 226
LL GAD+N + DG T LH A GAD+N + DG TP H A
Sbjct: 26 KKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKN 85
Query: 227 AQREACQILVENFCDMDVKNY 247
E ++L D++ +++
Sbjct: 86 GHHEIVKLLDAKGADVNARSW 106
Score = 64.7 bits (159), Expect = 1e-13
Identities = 37/157 (23%), Positives = 46/157 (29%), Gaps = 60/157 (38%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + EEV LL GAD+N + DG T LH A +
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLH-----------------------LAAKN 52
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
E V LL GAD+N + DG T H
Sbjct: 53 GHAEIVKLLLAKGADVNARSKDGNTPEH-------------------------------- 80
Query: 170 LAACASSD--KEEVLNLLKSGADINTANVDGLTALHQ 204
A + E V L GAD+N + H
Sbjct: 81 ---LAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 79.7 bits (196), Expect = 1e-17
Identities = 33/197 (16%), Positives = 59/197 (29%), Gaps = 21/197 (10%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
+ ++ E V +L+K G++ + G + L + KS N F
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV--------NNYDSGTF------ 183
Query: 110 SDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVF 169
E +L+ L + + T LH + ++
Sbjct: 184 ---EALLDYL--YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238
Query: 170 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQR 229
+++KE N + L LN QD +G T L+ AA
Sbjct: 239 PIQSGTNEKESKPNDKNGERKDSILEN--LDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296
Query: 230 EACQILVENFCDMDVKN 246
L++ D + N
Sbjct: 297 SIVDALLDYGADPFIAN 313
Score = 57.3 bits (138), Expect = 6e-10
Identities = 25/196 (12%), Positives = 46/196 (23%), Gaps = 75/196 (38%)
Query: 49 AACASSDKEEVLNLLKSGADINTA-NVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAAC 107
+ S +E + ++N + G T LH
Sbjct: 103 VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLH-----------------------WLT 139
Query: 108 ASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGC 167
+ ++ E V +L+K G++ + G + L
Sbjct: 140 SIANLELVKHLVKHGSNRLYGDNMGESCLV------------------------------ 169
Query: 168 VFLAACA--SSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAH 225
A + + D LL L +D T LH
Sbjct: 170 --KAVKSVNNYDSGTFEALLDYL-----------------YPCLILEDSMNRTILHHIII 210
Query: 226 WAQREACQILVENFCD 241
+ C + + D
Sbjct: 211 TSGMTGCSAAAKYYLD 226
Score = 52.7 bits (126), Expect = 3e-08
Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 18/157 (11%)
Query: 55 DKEEVLNLLKS-GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKE 113
D LL + + T LH + ++ +A A +
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM------------TGCSAAAKYYLD 226
Query: 114 EVLNLL-KSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKI---KFSSGC-V 168
++ + K + + + K E ++ + ++ + + S+G
Sbjct: 227 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC 286
Query: 169 FLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
A + V LL GAD AN GL +
Sbjct: 287 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 50.0 bits (119), Expect = 2e-07
Identities = 28/183 (15%), Positives = 48/183 (26%), Gaps = 30/183 (16%)
Query: 66 GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADI 125
D D + + H L + SS + + L +
Sbjct: 9 SGDNENNGTDDNDRTAGPIITFT----HDLT--------SDFLSSPLKIMKALPSPVVND 56
Query: 126 NTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLL 185
N + L +L E E + + SS S +EV +
Sbjct: 57 NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 116
Query: 186 KS-GADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDV 244
+ ++N D G TPLH A E + LV++ +
Sbjct: 117 PNTQLNLNIP-----------------VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY 159
Query: 245 KNY 247
+
Sbjct: 160 GDN 162
Score = 36.5 bits (84), Expect = 0.005
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALH 81
A + V LL GAD AN GL +
Sbjct: 290 AARLGNISIVDALLDYGADPFIANKSGLRPVD 321
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 75.5 bits (187), Expect = 1e-17
Identities = 31/175 (17%), Positives = 44/175 (25%), Gaps = 75/175 (42%)
Query: 73 NVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDG 132
A + D +EV + + G D+N G
Sbjct: 4 GSMCDKEFM-----------------------WALKNGDLDEVKDYVAKGEDVNRTLEGG 40
Query: 133 LTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSD-KEEVLN-LLKSGAD 190
LH A+ + E+L LL GAD
Sbjct: 41 RKPLH-----------------------------------YAADCGQLEILEFLLLKGAD 65
Query: 191 INTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQRE 230
IN + +T L A GAD + DG T A + A +
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120
Score = 71.7 bits (177), Expect = 3e-16
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDG 216
A + D +EV + + G D+N G LH A GAD+N D
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 217 WTPLHAAAHWAQREACQILVENFCDMDVKN 246
TPL +A + ++L+ D VK
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Score = 65.1 bits (160), Expect = 8e-14
Identities = 34/158 (21%), Positives = 45/158 (28%), Gaps = 60/158 (37%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + D +EV + + G D+N G LH A+
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLH-------------------------YAA 48
Query: 110 SD-KEEVLN-LLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGC 167
+ E+L LL GADIN + +T L
Sbjct: 49 DCGQLEILEFLLLKGADINAPDKHHITPLL------------------------------ 78
Query: 168 VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
+A V LL GAD DGLTA
Sbjct: 79 ---SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113
Score = 50.9 bits (123), Expect = 1e-08
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 15/68 (22%)
Query: 195 NVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENF 239
A G D+N G PLH AA Q E + L+
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 240 CDMDVKNY 247
D++ +
Sbjct: 64 ADINAPDK 71
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 74.1 bits (182), Expect = 6e-16
Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 50/198 (25%)
Query: 53 SSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDK 112
DK+ A G +ALH A
Sbjct: 67 QIDKDSGNPKPLVNAQCTDEFYQGHSALH-----------------------IAIEKRSL 103
Query: 113 EEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAA 172
+ V L+++GAD++ HQ + E P L+
Sbjct: 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL----------P-----------LSL 142
Query: 173 CASSDKEEVLNLL----KSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQ 228
A + + +V+ L A + + G T LH + + + L +
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH--ALVMIADNSPENSALVIHMYDGL 200
Query: 229 REACQILVENFCDMDVKN 246
+ L ++ N
Sbjct: 201 LQMGARLCPTVQLEEISN 218
Score = 72.1 bits (177), Expect = 3e-15
Identities = 37/224 (16%), Positives = 65/224 (29%), Gaps = 53/224 (23%)
Query: 21 EESETNRQPSEMGNKPKKIKFSSGCVFL-AACASSDKEEVLNLLKSGADINTANVDGLTA 79
+ + + P + N +F G L A + V L+++GAD++
Sbjct: 67 QIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ 126
Query: 80 LHQVSKSAS-TLPLHSLNCGPGCVFLAACASSDKEEVLNLL----KSGADINTANVDGLT 134
HQ + LPL LAAC +V+ L A + + G T
Sbjct: 127 KHQGTCFYFGELPLS----------LAACTKQ--WDVVTYLLENPHQPASLEATDSLGNT 174
Query: 135 ALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTA 194
LH L ++ + + L + +
Sbjct: 175 VLHALVMIADNSPENSA-----------------LVIHMYDGLLQMGARLCPTVQLEEIS 217
Query: 195 NVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
N + G TPL AA + E + +++
Sbjct: 218 N------------------HQGLTPLKLAAKEGKIEIFRHILQR 243
Score = 66.4 bits (162), Expect = 3e-13
Identities = 36/211 (17%), Positives = 53/211 (25%), Gaps = 60/211 (28%)
Query: 48 LAACASSDKEEVLNLLKS--------GADINTANVDGLTALHQVSKSASTLPLHSLNCGP 99
+ + EE+ LL+ T G T L LN
Sbjct: 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM----------KAVLNLQD 56
Query: 100 GCVFLAAC-ASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKP 158
G DK+ A G +ALH
Sbjct: 57 GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALH--------------------- 95
Query: 159 KKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWT 218
A + V L+++GAD++ HQ Y G
Sbjct: 96 ------------IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTC-----FYFGEL 138
Query: 219 PLHAAAHWAQREACQILVEN---FCDMDVKN 246
PL AA Q + L+EN ++ +
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATD 169
Score = 35.5 bits (82), Expect = 0.010
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 27/82 (32%)
Query: 51 CASSD--KEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACA 108
D + L + +N GLT L LA A
Sbjct: 194 IHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK----------------------LA--A 229
Query: 109 SSDKEEVLN-LLKSGADINTAN 129
K E+ +L+ A+
Sbjct: 230 KEGKIEIFRHILQREFSGAAAH 251
Score = 34.4 bits (79), Expect = 0.025
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 11/81 (13%)
Query: 177 DKEEVLNLLKSGADINTANVDGLTALHQA-----GADLNFQDYDGWTPLHAAA---HWAQ 228
D++ + +++ G + GL + + G T L A
Sbjct: 2 DRDRLFSVVSRG---VPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGV 58
Query: 229 REACQILVENFCDMDVKNYVV 249
L++ D +V
Sbjct: 59 NACIMPLLQIDKDSGNPKPLV 79
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 71.7 bits (176), Expect = 4e-15
Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 45/191 (23%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSAST--LPLHSLNCGPGCVFLAAC 107
A + V L+++GAD+ A + LPL LAAC
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLS----------LAAC 157
Query: 108 ASSDKEEVLNLL----KSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
+++ ++ L ADI+ + G T LH L E+ +
Sbjct: 158 --TNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL------------VEVADNTVDN-- 201
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNF---------QDY 214
F+ + + L + N GLT L A A ++
Sbjct: 202 ---TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA-ASSGKIGVLAYILQREI 257
Query: 215 DGWTPLHAAAH 225
HAAAH
Sbjct: 258 HEPECRHAAAH 268
Score = 47.9 bits (114), Expect = 9e-07
Identities = 24/184 (13%), Positives = 39/184 (21%), Gaps = 58/184 (31%)
Query: 66 GADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADI 125
A + ++ ++ L SL + K D
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESL----------------LPFLQRSKKRLTDS 46
Query: 126 NTANVD-GLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSD--KEEVL 182
+ + G T L A + + +
Sbjct: 47 EFKDPETGKTCLL--------------------------------KAMLNLHNGQNDTIA 74
Query: 183 NLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDM 242
LL ++ A Y G T LH A +LVEN D+
Sbjct: 75 LLLDVARKTDSLK-------QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127
Query: 243 DVKN 246
Sbjct: 128 QAAA 131
Score = 39.4 bits (92), Expect = 5e-04
Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 26/88 (29%)
Query: 188 GADINTANVDGLTALHQA----------------------GADLNFQDYD-GWTPLHAAA 224
A + ++ A D F+D + G T L A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 225 HWAQR---EACQILVENFCDMDVKNYVV 249
+ +L++ D V
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFV 90
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 67.0 bits (165), Expect = 8e-15
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 15/70 (21%)
Query: 184 LLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQ 228
LL++GAD+N + +G T LH A GAD+N +D +G TPLH AA
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80
Query: 229 REACQILVEN 238
E ++L+E
Sbjct: 81 LEVVKLLLEA 90
Score = 51.6 bits (125), Expect = 4e-09
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 15/65 (23%)
Query: 197 DGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCD 241
+G T LH A GAD+N +D +G TPLH AA E ++L+E D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 242 MDVKN 246
++ K+
Sbjct: 61 VNAKD 65
Score = 50.4 bits (122), Expect = 9e-09
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 27/78 (34%)
Query: 62 LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSD--KEEVLNLL 119
LL++GAD+N + +G T LH A+ + E V LL
Sbjct: 21 LLEAGADVNAKDKNGRTPLH-------------------------LAARNGHLEVVKLLL 55
Query: 120 KSGADINTANVDGLTALH 137
++GAD+N + +G T LH
Sbjct: 56 EAGADVNAKDKNGRTPLH 73
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 65.2 bits (159), Expect = 8e-13
Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 53/195 (27%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSAST--LPLHSLNCGPGCVFLAAC 107
A K V L++ GAD++ LPL LAAC
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS----------LAAC 149
Query: 108 ASSDKEEVLNLL----KSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
+++ +++ L AD+ + G T LH L + + ++
Sbjct: 150 --TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL------------VAIADNTREN-- 193
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAA 223
+ LL A + + DG +PL A
Sbjct: 194 ----------TKFVTKMYDLLLIKCAKLFP-----------DTNLEALLNNDGLSPLMMA 232
Query: 224 AHWAQREACQILVEN 238
A + Q ++
Sbjct: 233 AKTGKIGIFQHIIRR 247
Score = 57.9 bits (140), Expect = 3e-10
Identities = 38/240 (15%), Positives = 57/240 (23%), Gaps = 94/240 (39%)
Query: 48 LAACASSDKEEVLN----LLKSGADIN----TANVDGLTALHQVSKSAS-----TLPLHS 94
+ + + LL + G T L + + S T+P+
Sbjct: 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL- 68
Query: 95 LNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEM 154
A + + E +N + G TALH
Sbjct: 69 --------LDIAEKTGNMREFIN-----SPFRDVYYRGQTALH----------------- 98
Query: 155 GNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTAN--------------VDGLT 200
A K V L++ GAD++ G
Sbjct: 99 ----------------IAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142
Query: 201 ALHQA------------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDM 242
L A ADL QD G T LHA A + + + M
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV--AIADNTRENTKFVTKM 200
Score = 44.0 bits (104), Expect = 2e-05
Identities = 16/114 (14%), Positives = 27/114 (23%), Gaps = 37/114 (32%)
Query: 170 LAACASSDKEEVLN----LLKSGADIN----TANVDGLTALHQA---------------- 205
+ + + LL + G T L +A
Sbjct: 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69
Query: 206 -------------GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+ Y G T LH A + ++LVE D+ +
Sbjct: 70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123
Score = 41.7 bits (98), Expect = 1e-04
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 27/101 (26%)
Query: 48 LAACASSDKEEVLNLL----KSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
LAAC +++ +++ L AD+ + G T LH + A N F
Sbjct: 146 LAAC--TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD-------NTRENTKF 196
Query: 104 LAACASSDKEEVLNLLKSGADINTA-------NVDGLTALH 137
+ LL A + N DGL+ L
Sbjct: 197 VTKMYD-------LLLIKCAKLFPDTNLEALLNNDGLSPLM 230
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 61.1 bits (149), Expect = 2e-12
Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 51/139 (36%)
Query: 112 KEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLA 171
L+ G+ + + D L
Sbjct: 7 HHHSSGLVPRGSHMGS---DLGKKLL---------------------------------E 30
Query: 172 ACASSDKEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDG 216
A + +EV L+ +GAD+ + +G T LH A GAD+ QD G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 217 WTPLHAAAHWAQREACQIL 235
T + + +IL
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 59.9 bits (146), Expect = 5e-12
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 18/76 (23%)
Query: 178 KEEVLNLLKSGADINTANVDGLTALHQA---------------GADLNFQDYDGWTPLHA 222
L+ G+ + + D L +A GAD+ +D +G TPLH
Sbjct: 7 HHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHL 63
Query: 223 AAHWAQREACQILVEN 238
AA E ++L+E
Sbjct: 64 AARNGHLEVVKLLLEA 79
Score = 42.2 bits (100), Expect = 1e-05
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 27/100 (27%)
Query: 50 ACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAACAS 109
A + +EV L+ +GAD+ + +G T LH A+
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLH-------------------------LAA 65
Query: 110 SD--KEEVLNLLKSGADINTANVDGLTALHQLKRWEESET 147
+ E V LL++GAD+ + G TA +
Sbjct: 66 RNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL 105
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 58.4 bits (141), Expect = 4e-10
Identities = 26/161 (16%), Positives = 39/161 (24%), Gaps = 24/161 (14%)
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
L+ S KE + L ++ V L L+ + +Q +K K IK
Sbjct: 39 LSLMTLSYKEAIHIFLPGTKNME--QVRQLLCLYYAH---YNRNAKQLWSDAHK-KGIKS 92
Query: 164 SSGCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALHQA---------------GA 207
C A S + L LL S + + A A
Sbjct: 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 152
Query: 208 DLNFQD--YDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+ + AA L E
Sbjct: 153 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 193
Score = 53.0 bits (127), Expect = 2e-08
Identities = 26/212 (12%), Positives = 55/212 (25%), Gaps = 36/212 (16%)
Query: 62 LLKSGADINTANV--DGLTALHQVSK------------SASTLPLHSLNCGPGCVFLAAC 107
L + A + + A ++ A T + F A
Sbjct: 147 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 206
Query: 108 ASSDKEEVLN-LLKSGADINTANVDGLTALHQL------KRWEESETNRQPSEMGNK--- 157
V+N LL + A + + + + ++ N
Sbjct: 207 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 266
Query: 158 ---PKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQAGADLNFQDY 214
K + G L + E +L+ ++ ++ + +A A
Sbjct: 267 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIR--FLLSIPGI-------KALAPTATIPG 317
Query: 215 DGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
D L A + AC +L+ + +
Sbjct: 318 DANELLRLALRLGNQGACALLLSIPSVLALTK 349
Score = 51.5 bits (123), Expect = 8e-08
Identities = 32/228 (14%), Positives = 53/228 (23%), Gaps = 64/228 (28%)
Query: 48 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGC-----V 102
L+ S KE + L ++ V L L+ + + L S G
Sbjct: 39 LSLMTLSYKEAIHIFLPGTKNME--QVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVIC 96
Query: 103 FLAACASSDK--EEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKK 160
F+AA + + LL S + + A
Sbjct: 97 FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR----------------------- 133
Query: 161 IKFSSGCVFLAACASSDKEEVLN-LLKSGADINTANV--DGLTALHQA------------ 205
LAA + VLN L + A + + A A
Sbjct: 134 ---------LAA--ENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182
Query: 206 ---GADL---NFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKNY 247
Q + + AA L++ +
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI 230
Score = 49.2 bits (117), Expect = 4e-07
Identities = 33/220 (15%), Positives = 52/220 (23%), Gaps = 53/220 (24%)
Query: 37 KKIKFSSGCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSASTLPLHSL 95
K IK C A S + L LL S + + A
Sbjct: 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR-------------- 133
Query: 96 NCGPGCVFLAACASSDKEEVLN-LLKSGADINTANV--DGLTALHQ-------------L 139
LA A + VLN L + A + + A
Sbjct: 134 --------LA--AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 183
Query: 140 KRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLN-LLKSGADINTANVDG 198
+ T I+ + F A V+N LL + A +
Sbjct: 184 ELAPTEAT-----------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 232
Query: 199 LTALHQAGADLNFQDYDGWTPLHAAAHWAQREACQILVEN 238
+ + + +H A + + LV
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTK 272
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 54.9 bits (132), Expect = 6e-09
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 24/101 (23%)
Query: 170 LAACASSDKEEVLNLLKSGADIN------TANVDGLTALHQA------------------ 205
A + D VL +G D A LH A
Sbjct: 137 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 196
Query: 206 GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G L+ + DG T LH AA + Q + ++L++ + N
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN 237
Score = 43.0 bits (101), Expect = 6e-05
Identities = 32/167 (19%), Positives = 46/167 (27%), Gaps = 65/167 (38%)
Query: 48 LAACASSDKEEVLNLLKSGADIN------TANVDGLTALHQVSKSASTLPLHSLNCGPGC 101
A + D VL +G D A LH
Sbjct: 137 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLH-------------------- 176
Query: 102 VFLAACASSDKEEVLN--LLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPK 159
LA ++ L ++++G ++ DG TALH
Sbjct: 177 --LAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY--------------------- 213
Query: 160 KIKFSSGCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALHQA 205
A ++ + L LLK A + T N G TAL A
Sbjct: 214 -------------AALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Score = 37.2 bits (86), Expect = 0.004
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 28/96 (29%)
Query: 50 ACASSDKEEVLN---LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLAA 106
A +++ + ++++G ++ DG TALH
Sbjct: 178 AVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY------------------------ 213
Query: 107 CASSDKEEVLN-LLKSGADINTANVDGLTALHQLKR 141
A ++ + L LLK A + T N G TAL ++
Sbjct: 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 53.5 bits (128), Expect = 1e-08
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 24/102 (23%)
Query: 169 FLAACASSDKEEVLNLLKSGADIN------TANVDGLTALHQA----------------- 205
A + D VL +G D A LH A
Sbjct: 155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 214
Query: 206 -GADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
G L+ + DG T LH AA + Q + ++L++ + N
Sbjct: 215 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN 256
Score = 47.3 bits (112), Expect = 1e-06
Identities = 33/165 (20%), Positives = 44/165 (26%), Gaps = 59/165 (35%)
Query: 47 FLAACASSDKEEVLNLLKSGADIN------TANVDGLTALHQVSKSASTLPLHSLNCGPG 100
A + D VL +G D A LH K A+ L P
Sbjct: 155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL------PL 208
Query: 101 CVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKK 160
F+ +G ++ DG TALH
Sbjct: 209 VDFIIQ--------------NGGHLDAKAADGNTALHY---------------------- 232
Query: 161 IKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
A + + + LLK A + T N G TAL A
Sbjct: 233 -----------AALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
Score = 40.4 bits (94), Expect = 3e-04
Identities = 25/159 (15%), Positives = 43/159 (27%), Gaps = 57/159 (35%)
Query: 103 FLAACASSDKEEVLNLLKSGADIN------TANVDGLTALHQLKRWEESETNRQPSEMGN 156
A + D VL +G D A LH
Sbjct: 155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLH------------------- 195
Query: 157 KPKKIKFSSGCVFLAACASSDKEEVLN---LLKSGADINTANVDGLTALHQA-------- 205
A +++ + ++++G ++ DG TALH A
Sbjct: 196 --------------LAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 241
Query: 206 -------GADLNFQDYDGWTPLHAAAHWAQREACQILVE 237
A + + G T L A +E ++L +
Sbjct: 242 LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 30.0 bits (67), Expect = 0.65
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 42 SSGCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALHQVSKSAST 89
+ G L A ++ + L LLK A + T N G TAL K
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK 272
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 51.3 bits (122), Expect = 9e-08
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 17/129 (13%)
Query: 135 ALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTA 194
+ + R E ++ +F A+ + + L GAD+N
Sbjct: 170 VPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWV 229
Query: 195 NV--DGLTALHQA---------------GADLNFQDYDGWTPLHAAAHWAQREACQILVE 237
N D T L QA GA++N D G PLH A + ++
Sbjct: 230 NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
Query: 238 NFCDMDVKN 246
D+ ++
Sbjct: 290 RGADLGARD 298
Score = 43.2 bits (101), Expect = 3e-05
Identities = 35/192 (18%), Positives = 54/192 (28%), Gaps = 58/192 (30%)
Query: 16 QLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANV- 74
+ + R E ++ +F A+ + + L GAD+N N
Sbjct: 173 KPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGG 232
Query: 75 -DGLTALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSGADINTANVDGL 133
D T L Q + + S C FL L++GA++N A+ G
Sbjct: 233 QDNATPLIQATAANSL---------LACEFL--------------LQNGANVNQADSAGR 269
Query: 134 TALHQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLNLLKSGADINT 193
LH A LK GAD+
Sbjct: 270 GPLHH---------------------------------ATILGHTGLACLFLKRGADLGA 296
Query: 194 ANVDGLTALHQA 205
+ +G L A
Sbjct: 297 RDSEGRDPLTIA 308
Score = 37.1 bits (85), Expect = 0.003
Identities = 35/157 (22%), Positives = 51/157 (32%), Gaps = 50/157 (31%)
Query: 101 CVFLAACASSDKEEVLNLLKSGADINTANV--DGLTALHQLKRWEESETNRQPSEMGNKP 158
+F A+ + + L GAD+N N D T L Q
Sbjct: 202 LLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQ-------------------- 241
Query: 159 KKIKFSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA------------- 205
A A++ LL++GA++N A+ G LH A
Sbjct: 242 -------------ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL 288
Query: 206 --GADLNFQDYDGWTPLHAAAHWAQREACQILVENFC 240
GADL +D +G PL A A + +L
Sbjct: 289 KRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM 325
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 47.3 bits (112), Expect = 1e-06
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 24/99 (24%)
Query: 172 ACASSDKEEVLNLLKSGADIN------TANVDGLTALHQA------------------GA 207
A + D +L G D+ + TALH A
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 208 DLNFQDYDGWTPLHAAAHWAQREACQILVENFCDMDVKN 246
+L+ Q G T LH E ++L+ +++ N
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN 235
Score = 43.8 bits (103), Expect = 2e-05
Identities = 30/162 (18%), Positives = 47/162 (29%), Gaps = 59/162 (36%)
Query: 50 ACASSDKEEVLNLLKSGADIN------TANVDGLTALHQVSKSASTLPLHSLNCGPGCVF 103
A + D +L G D+ + TALH +S LH ++
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF------ 190
Query: 104 LAACASSDKEEVLNLLKSGADINTANVDGLTALHQLKRWEESETNRQPSEMGNKPKKIKF 163
L+++ +++ G TALH
Sbjct: 191 --------------LVQNSGNLDKQTGKGSTALHY------------------------- 211
Query: 164 SSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQA 205
C + + E + LL+ A I AN G T L A
Sbjct: 212 --------CCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
Score = 41.1 bits (96), Expect = 2e-04
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 26/92 (28%)
Query: 49 AACASSDKEEVLN---LLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFLA 105
A S D+ + L+++ +++ G TALH
Sbjct: 175 LAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY----------------------- 211
Query: 106 ACASSDKEEVLNLLKSGADINTANVDGLTALH 137
C + + E + LL+ A I AN G T L
Sbjct: 212 CCLTDNAECLKLLLRGKASIEIANESGETPLD 243
Score = 40.4 bits (94), Expect = 2e-04
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 18/85 (21%)
Query: 171 AACASSDKEEVLN---LLKSGADINTANVDGLTALHQA---------------GADLNFQ 212
A S D+ + L+++ +++ G TALH A +
Sbjct: 175 LAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA 234
Query: 213 DYDGWTPLHAAAHWAQREACQILVE 237
+ G TPL A ++L +
Sbjct: 235 NESGETPLDIAKRLKHEHCEELLTQ 259
Score = 31.9 bits (72), Expect = 0.14
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 42 SSGCVFLAACASSDKEEVLN-LLKSGADINTANVDGLTALH 81
G L C +D E L LL+ A I AN G T L
Sbjct: 203 GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 6e-05
Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 52/172 (30%)
Query: 2 SETRSSSALFKRAEQLKRWEESETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLN 61
T + +F + + W E + P + +L + S ++
Sbjct: 200 RTTLDAEKVFTQGLNILEWLE-NPSNTPDKD--------------YLLSIPISCP--LIG 242
Query: 62 LLKSGADINTANVDGLT--ALHQVSKSASTLPLHSLNCGPGCVFLAACASSDKEEVLNLL 119
+++ + TA + G T L K A+ G V A A +D
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATG-------HSQGLVTAVAIAETD-------- 287
Query: 120 KSGADINTANVDGLTAL-------HQ--------LKRWEESETNRQ--PSEM 154
S + +T L ++ E+S N + PS M
Sbjct: 288 -SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Score = 41.6 bits (97), Expect = 2e-04
Identities = 49/305 (16%), Positives = 92/305 (30%), Gaps = 100/305 (32%)
Query: 7 SSALFKRAEQLKRWEE-SETNRQPSE---MGNKPKKI-----KFSSGCVFLAACASSDK- 56
+A F A QL E+ ++ +P+E ++P KF ++++ K
Sbjct: 23 PTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGKFLG---YVSSLVEPSKV 77
Query: 57 ---EEVLNL-LK-------SGADINT--ANVDG-----LTALHQVSKS---ASTLPLHSL 95
++VLNL L G DI+ A + L ++ K+ A +
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 96 NCGPGCVFLAACASSD-----------------KE--------------------EVL-N 117
+ A + +E E L
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 118 LLKSGADINTANVDGLTALHQLKRWEESETNRQPSE--MGNKP---KKIKFSSGCVFLAA 172
L+++ D GL + W E + P + + + P I ++
Sbjct: 198 LIRTTLDAEKVFTQGL----NILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 173 CASSDK--EEVLNLLKSGADINTANVDGLTALHQAGADLNFQDYDGWTPLHAAAHWAQRE 230
E+ + L GA ++ + +TA+ A D W + R+
Sbjct: 253 AKLLGFTPGELRSYL-KGATGHSQGL--VTAVAIAET-------DSWESFFVSV----RK 298
Query: 231 ACQIL 235
A +L
Sbjct: 299 AITVL 303
Score = 33.9 bits (77), Expect = 0.060
Identities = 38/196 (19%), Positives = 57/196 (29%), Gaps = 78/196 (39%)
Query: 5 RSSSALFKRAEQLKRWEESETNRQP-SEMGNKPKKIKFSSGCVFLA----------ACAS 53
+S L + K + +R P SE +K+KFS+ FL AS
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSE-----RKLKFSN--RFLPVASPFHSHLLVPAS 436
Query: 54 SDKEEVL---NLLKSGADI-----NTAN---------------VDGLTALHQV--SKSAS 88
+ L N+ + DI +T + VD + L V +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKWETTTQ 495
Query: 89 TLPLHSLNCGPGCVFLAACASSDKEEVLNLLKSG-ADINTANVDG-----LTALHQLKRW 142
H L+ GPG SG + N DG + A
Sbjct: 496 FKATHILDFGPGGA------------------SGLGVLTHRNKDGTGVRVIVA------- 530
Query: 143 EESETNRQP-SEMGNK 157
+ P + G K
Sbjct: 531 --GTLDINPDDDYGFK 544
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 9e-04
Identities = 32/232 (13%), Positives = 63/232 (27%), Gaps = 35/232 (15%)
Query: 36 PKKIK-FSSGC----------VFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVS 84
K F+ C V A++ L+ + V L + +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKY-LD 312
Query: 85 KSASTLPLHSLNCGPGCVFLAACASSDKEEVL---NLLKSGAD-INTANVDGLTALHQLK 140
LP L P L+ A S ++ + N D + T L L
Sbjct: 313 CRPQDLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL---- 366
Query: 141 RWEESETNRQPSEMGNKPKKIKFSSG--CVFLAACASSDKEEVLNLLKSGADINTANVDG 198
E +E + + P + + SD V+N L + + +
Sbjct: 367 --EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 199 LTALHQAGADLNFQDYDGWTPLHA---AAHWAQREACQILVENFCDMDVKNY 247
++ +L + + LH + + ++ + Y
Sbjct: 425 TISIPSIYLELKVKL-ENEYALHRSIVDHYNIPKTFDS---DDLIPPYLDQY 472
Score = 28.3 bits (62), Expect = 3.4
Identities = 30/244 (12%), Positives = 61/244 (25%), Gaps = 79/244 (32%)
Query: 8 SALFK-RAEQLKRWEESETNR------------QPSEMGNK-------PKKIKFSSG--C 45
+ + W+ ++ +P+E P +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 46 VFLAACASSDKEEVLNLL--KSGADIN---------------TANVDGLTALHQ--VSKS 86
+ SD V+N L S + ++ ALH+ V
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 87 ASTLPLHSLNCGPGCVF----------LAACASSDKEEV-----LNL------LKSGADI 125
S + P + L ++ + L+ ++ +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 126 NTANVDGLTALHQLKRWEE--SETNRQPSEMGNKPKKIKFSSGCVFLAACASSDKEEVLN 183
A+ L L QLK ++ + + + + N FL N
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD--------FLPKIEE-------N 558
Query: 184 LLKS 187
L+ S
Sbjct: 559 LICS 562
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.0
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 81 HQVSKSASTLPLHSLNCGPGCVFLAACAS 109
+ K ++L L++ + P LA A+
Sbjct: 20 QALKKLQASLKLYADDSAPA---LAIKAT 45
>1yio_A Response regulatory protein; transcription regulation, DNA binding
protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2
c.23.1.1 PDB: 1zn2_A
Length = 208
Score = 28.8 bits (65), Expect = 1.3
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 17/84 (20%)
Query: 41 FSSGCVFLAACASSDKEEVLNLLKSGADINTANVDGLTALHQVSKSASTLPLHSLNCGPG 100
F FL ++ L L D+ + G+ Q++ + +P+
Sbjct: 34 FDCASTFLEH-RRPEQHGCLVL-----DMRMPGMSGIELQEQLTAISDGIPI-------- 79
Query: 101 CVFLAACASSDKEEVLNLLKSGAD 124
VF+ A D + +K+GA
Sbjct: 80 -VFIT--AHGDIPMTVRAMKAGAI 100
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A
{Mycobacterium tuberculosis}
Length = 386
Score = 28.6 bits (64), Expect = 1.9
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 207 ADLNFQDYDGWTPLHAAAHWAQREACQILVENFCDM 242
A + D+ L ++ + +++N DM
Sbjct: 150 ASDEWTDWRWNRILIEGSNC------RDIIDNVTDM 179
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 2.7
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 13 RAEQLKRWEE--SETNRQPSEMGNKPKK 38
R EQ KR +E + + E K KK
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKK 118
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 27.9 bits (63), Expect = 2.7
Identities = 5/35 (14%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 57 EEVLNLLKSGAD---INTANVDGLTALHQVSKSAS 88
E L +GAD + + ++ +
Sbjct: 87 EHFLEAFLAGADKALAASVFHFREIDMRELKEYLK 121
Score = 27.1 bits (61), Expect = 5.6
Identities = 5/21 (23%), Positives = 7/21 (33%), Gaps = 3/21 (14%)
Query: 113 EEVLNLLKSGAD---INTANV 130
E L +GAD +
Sbjct: 87 EHFLEAFLAGADKALAASVFH 107
Score = 27.1 bits (61), Expect = 5.6
Identities = 5/21 (23%), Positives = 7/21 (33%), Gaps = 3/21 (14%)
Query: 179 EEVLNLLKSGAD---INTANV 196
E L +GAD +
Sbjct: 87 EHFLEAFLAGADKALAASVFH 107
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 28.2 bits (62), Expect = 3.0
Identities = 1/24 (4%), Positives = 6/24 (25%)
Query: 206 GADLNFQDYDGWTPLHAAAHWAQR 229
+ T ++ ++
Sbjct: 504 KVSPESNEDISTTVVYRMESLGEK 527
>3eq2_A Probable two-component response regulator; adaptor sigmas,
signaling protein; 3.40A {Pseudomonas aeruginosa} PDB:
3f7a_A
Length = 394
Score = 27.9 bits (62), Expect = 3.2
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 20/89 (22%)
Query: 42 SSGCVFLAACASSDKEEVLNLLKSG------ADINTANVDGLTALHQVSKSASTLPLHSL 95
S L A + + L + +S D+ +DGL + ++ ++AS P+
Sbjct: 27 DSNFKVLQA---LNGLQGLQIFESEQPDLVICDLRMPQIDGLELIRRIRQTASETPI--- 80
Query: 96 NCGPGCVFLAACASSDKEEVLNLLKSGAD 124
+ L+ + + + L+ GA
Sbjct: 81 ------IVLS--GAGVMSDAVEALRLGAA 101
>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, thermophilic
enzyme, degenerate DNA recognition, hydrolase/DNA
complex; HET: DNA; 1.70A {Geobacillus
stearothermophilus} SCOP: c.52.1.11
Length = 323
Score = 26.7 bits (58), Expect = 8.4
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 65 SGAD--INTANVDGLTALHQVSKSASTLPLHSLNCGPGCVFL-AACASSDKEEVLNLLKS 121
+GAD TAN TAL ++ S L P +F+ AA S EE+ + L+S
Sbjct: 248 AGADEHWKTAN----TALTRIRNKFSEKGLS-----PKTIFIGAAIEHSMAEEIWDQLQS 298
Query: 122 GADINTANVDGLTALHQLKRW 142
G+ N+AN+ + L RW
Sbjct: 299 GSLTNSANLTKTEQVGSLCRW 319
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 26.3 bits (59), Expect = 10.0
Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 57 EEVLNLLKSGAD---INTANV 74
E L GAD INTA V
Sbjct: 92 EHFLEAFLRGADKVSINTAAV 112
Score = 26.3 bits (59), Expect = 10.0
Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 113 EEVLNLLKSGAD---INTANV 130
E L GAD INTA V
Sbjct: 92 EHFLEAFLRGADKVSINTAAV 112
Score = 26.3 bits (59), Expect = 10.0
Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 179 EEVLNLLKSGAD---INTANV 196
E L GAD INTA V
Sbjct: 92 EHFLEAFLRGADKVSINTAAV 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.126 0.369
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,537,680
Number of extensions: 193297
Number of successful extensions: 1647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 856
Number of HSP's successfully gapped: 482
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.0 bits)