BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9958
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + PY C HCD+TFRQKQLL H YH+P++VP + C +C K F + +
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTM 63
Query: 63 LRH 65
RH
Sbjct: 64 ARH 66
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
+LIH D PY C +C + F QK +K+H ++ EK HKC C KAF
Sbjct: 21 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH---------TGEKPHKCQVCGKAFSQSS 71
Query: 61 NLLRHMTLH 69
NL+ H H
Sbjct: 72 NLITHSRKH 80
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + PY C C ++F K+ L RH + EK +KCPEC K+F + NL
Sbjct: 43 THTGEKPYKCPECGKSFSDKKDLTRHQRTHTG---------EKPYKCPECGKSFSQRANL 93
Query: 63 LRHMTLH 69
H H
Sbjct: 94 RAHQRTH 100
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + PY C C ++F Q L+ H + EK +KCPEC K+F + NL
Sbjct: 99 THTGEKPYACPECGKSFSQLAHLRAHQRTHTG---------EKPYKCPECGKSFSREDNL 149
Query: 63 LRHMTLHDPDSELIEQQVALKLGRQKKVHI 92
H H + + R+ +++
Sbjct: 150 HTHQRTHTGEKPYKCPECGKSFSRRDALNV 179
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
+ PY C C ++F + L H + EK +KCPEC K+F K +L RH
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTG---------EKPYKCPECGKSFSDKKDLTRHQ 69
Query: 67 TLH 69
H
Sbjct: 70 RTH 72
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + PY C C ++F Q+ L+ H + EK + CPEC K+F +L
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTG---------EKPYACPECGKSFSQLAHL 121
Query: 63 LRHMTLHDPDSELIEQQVALKLGRQKKVHI 92
H H + + R+ +H
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHT 151
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + PY C C ++F ++ L H + EK +KCPEC K+F + L
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTG---------EKPYKCPECGKSFSRRDAL 177
Query: 63 LRHMTLH 69
H H
Sbjct: 178 NVHQRTH 184
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 42 PKEKTHKCPECKKAFRHKGNLLRHMTLH 69
P EK + CPEC K+F +L H H
Sbjct: 17 PGEKPYACPECGKSFSRSDHLAEHQRTH 44
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H D+ PY CD C + FR++ L+ H ++ KEK KC EC K F L
Sbjct: 39 THTDERPYTCDICHKAFRRQDHLRDHRYIH---------SKEKPFKCQECGKGFCQSRTL 89
Query: 63 LRHMTLH 69
H TLH
Sbjct: 90 AVHKTLH 96
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + PY C C ++F Q L++H + EK +KCPEC K+F +L
Sbjct: 26 THTGEKPYKCPECGKSFSQSSDLQKHQRTHTG---------EKPYKCPECGKSFSRSDHL 76
Query: 63 LRHMTLH 69
RH H
Sbjct: 77 SRHQRTH 83
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
+ PY C C ++F Q L++H + EK +KCPEC K+F +L +H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTG---------EKPYKCPECGKSFSQSSDLQKHQ 52
Query: 67 TLH 69
H
Sbjct: 53 RTH 55
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHN 34
H + PY C C ++F + L RH + N
Sbjct: 54 THTGEKPYKCPECGKSFSRSDHLSRHQRTHQN 85
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
+ P+ C+ C +T+R L RH + Y P S CPEC K FR + + RH+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLG--YRPRS-------CPECGKCFRDQSEVNRHL 52
Query: 67 TLH 69
+H
Sbjct: 53 KVH 55
Score = 26.2 bits (56), Expect = 9.9, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHN 34
H+ P C C + FR + + RH+ ++ N
Sbjct: 27 HLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
+ PY C C + F + +L +H ++ EK +KC EC KAF L+ H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTG---------EKPYKCLECGKAFSQNSGLINHQ 62
Query: 67 TLH 69
+H
Sbjct: 63 RIH 65
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.008, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 43 KEKTHKCPECKKAFRHKGNLLRHMTLH 69
KEK +KC EC KAFR + NL H +H
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIH 35
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 6 DQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRH 65
++ Y CD C ++F L +H + EK +KC EC KAF + +L+ H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTH---------TGEKPYKCDECGKAFIQRSHLIGH 65
Query: 66 MTLH 69
+H
Sbjct: 66 HRVH 69
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+K +KC C+ +FR+KGNL H T+H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVH 40
Score = 32.7 bits (73), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL 68
PY CD C +FR K L H ++ EK ++C C F NL H +
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTG---------EKPYRCNICGAQFNRPANLKTHTRI 67
Query: 69 HD 70
H
Sbjct: 68 HS 69
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 33.1 bits (74), Expect = 0.078, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRH 65
++C+ C + F +++ LKRH + N EK + C C +AF + L+RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN---------EKPYPCGLCNRAFTRRDLLIRH 49
Score = 29.6 bits (65), Expect = 0.91, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHN 34
H ++ PY C C++ F ++ LL RH H+
Sbjct: 25 HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K FRH L RH +H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + FR L RH
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRH 31
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
K HKCP C K F GNL H+ +H D
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG 29
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.3 bits (72), Expect = 0.16, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C +C KAF KG+L+ H+ +H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLY 32
+ PY CD C + F QK L H+ ++
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 32.0 bits (71), Expect = 0.19, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
Y+C+ C ++ +LK+H+ + + + + C C +F+ KGNL +HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV---------RPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 32.0 bits (71), Expect = 0.19, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
S ++ ++C EC K+FR KG+L H +H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC KAFR NL H +H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIH 35
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.21, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRH 28
+ P+ CD CD++FRQ+ L H
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSH 31
Score = 26.9 bits (58), Expect = 5.8, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +C C K+FR + L H +H
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIH 35
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
EK ++C EC+KAF K NL+ H H +S
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.23, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C EC KAF + NL H +H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIH 35
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 0.25, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLHDPD 72
KTH C C K F+ KG L H LH D
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.26, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C EC KAF K NL +H +H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 0.28, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
S EK ++C EC K+F +G+L H LH
Sbjct: 5 SSGEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.29, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
K + C EC KAFR K L+ HM H
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTH 33
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 31.2 bits (69), Expect = 0.35, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
+ T +C EC K FRH L+ H LH +S
Sbjct: 10 KTTSECQECGKIFRHSSLLIEHQALHAGES 39
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 0.37, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
S EK H+C C KAF K L+ H +H +S
Sbjct: 5 SSGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
M H PY C CD L +H+ ++ + E+ KC C A R+
Sbjct: 28 MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD---------ERPFKCQICPYASRNSS 78
Query: 61 NLLRHMTLHDPDS 73
L H+ H DS
Sbjct: 79 QLTVHLRSHTGDS 91
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 15 CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS- 73
C + FR +++H++ H P + H C EC KAF L RH +H +
Sbjct: 13 CTKMFRDNSAMRKHLHT-HGP---------RVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 74 -----ELIEQQVALKLGRQKKVHIIDGHKVEVIP 102
E ++ +L + V I G + V P
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.63, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC KAFR + +L H H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.0 bits (66), Expect = 0.68, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+K +C C K+FR KGNL+ H +H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIH 35
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.70, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC KAF L RH +H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +C EC+KAF K NL+ H H
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTH 35
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.84, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC KAF K L+ HM H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K FR +L RH +H
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIH 35
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.89, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC K+FR LL+H +H
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVH 35
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.94, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC KAF + NL++H +H
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIH 35
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
M +H+ PY C C + F+ K L H+ ++ K ++C C K F +
Sbjct: 29 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI---------KPYECNICAKRFMWRD 79
Query: 61 NLLRHMT 67
+ RH+T
Sbjct: 80 SFHRHVT 86
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRH-VNLYHNP 35
M+ H + PY C C Q F QK+ L+ H + L+ P
Sbjct: 86 MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 12 CDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRH 65
C C + F K LK H N H EK +CP+C K + K NLL H
Sbjct: 10 CPTCHKKFLSKYYLKVH-NRKHTG--------EKPFECPKCGKCYFRKENLLEH 54
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
+ C C +TFR++ L+ H+ + H E +KC C + F K +L HM
Sbjct: 67 FTCSVCQETFRRRMELRLHM-VSHTG--------EMPYKCSSCSQQFMQKKDLQSHM 114
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 4 HIDQNPYLCDHCDQT-FRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + P+ C C + FR++ LL+ N E+ C C++ FR + L
Sbjct: 30 HTGEKPFECPKCGKCYFRKENLLEHEARNCMNR-------SEQVFTCSVCQETFRRRMEL 82
Query: 63 LRHMTLHDPD 72
HM H +
Sbjct: 83 RLHMVSHTGE 92
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.99, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK KC EC KAFR +L H+ +H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIH 35
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
S EK + C EC KAF K L+ H +H
Sbjct: 5 SSGEKPYSCNECGKAFTFKSQLIVHKGVH 33
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 15 CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPD 72
C + F +Q L H H +K+ CPE C K+F K +L HM LH
Sbjct: 15 CGRIFSNRQYLNHHKKYQH--------IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 73 SELI 76
+ I
Sbjct: 67 RDYI 70
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 48 KCPECKKAFRHKGNLLRHMTLH 69
KC EC K F GNL RH+ +H
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIH 25
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 2 LIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHN 34
L H + + CD CD F K +K+H N +HN
Sbjct: 56 LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 90
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
S E ++C EC KAF K L+ H H +S
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGES 37
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
S EK H+C EC+K F L+ H +H
Sbjct: 5 SSGEKLHECSECRKTFSFHSQLVIHQRIH 33
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
S EK + C EC KAF K + + H +H +S
Sbjct: 5 SSGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 43 KEKTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
+EK ++C EC KAF L+ H H +S
Sbjct: 9 REKPYECSECGKAFIRNSQLIVHQRTHSGES 39
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 12 CDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHD 70
C+ C + FR L RH L H+ EK + CP C F+ K + H+ HD
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHS--------GEKPYSCPVCGLRFKRKDRMSYHVRSHD 59
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 43 KEKTHKCPECKKAFRHKGNLLRHMTLH 69
KE KC EC K F H +L +H +H
Sbjct: 9 KEHPFKCNECGKTFSHSAHLSKHQLIH 35
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F +L+RH +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIH 35
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 49 CPECKKAFRHKGNLLRHMTLHD 70
CPEC K F +L +H+TLH+
Sbjct: 5 CPECPKRFMRSDHLSKHITLHE 26
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
+LC C ++F K +RH+ L H P C C F L RH+
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFP---------CKYCPATFYSSPGLTRHINKC 79
Query: 70 DPD 72
P
Sbjct: 80 HPS 82
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPS 41
+ P +C+ C +TFRQ L +H ++ PS
Sbjct: 8 KKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSGPS 42
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
Length = 190
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 2 LIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHN 34
L H + + CD CD F K +K+H N +HN
Sbjct: 65 LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ HKC EC K+F +L++H +H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIH 35
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
K + C EC KAFR K L+ H H +S
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGES 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ ++C EC KAF K L+ H +H
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIH 35
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 2.7, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPS 41
+ PY+C+ C ++F QK L RH ++ PS
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 26.6 bits (57), Expect = 8.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC K+F K +L RH +H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHD 70
EK +KC C KAFR +L++H ++H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHS 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 2.9, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 49 CPECKKAFRHKGNLLRHMTLH 69
C EC K F HK NL+ H +H
Sbjct: 15 CSECGKVFTHKTNLIIHQKIH 35
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 43 KEKTHKCPECKKAFRHKGNLLRHMTLH 69
+EK+H+C EC + F +L+ H LH
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLH 35
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F +L RH +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLY 32
+ PY C+ C + F Q L RH ++
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIH 35
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
S EK ++C +C KAF K L+ H H +S
Sbjct: 5 SSGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHD 70
EK ++C C+KAF H +L +H +H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHS 36
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
S EK + C ECK+ F L++H +H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC K+F LL+H LH
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLH 35
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 7 QNPYLC--DHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLR 64
+ PY C + CD+ F Q L RH+ ++ +K +C C + F +L
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTG---------QKPFQCRICMRNFSRSDHLTT 52
Query: 65 HMTLHDPDSELIEQQVALKLGR 86
H+ H + K R
Sbjct: 53 HIRTHTGEKPFACDICGRKFAR 74
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC KAF H L H +H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIH 35
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 15 CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH-----KCPECKKAFRHKGNLLRHMTLH 69
CD+TF L HV + H P++ H +CP K+F+ K L+ H+ +H
Sbjct: 31 CDRTFSTMHELVTHVTMEH-----VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ + C C KAF + NL++H +H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ H+C +C K F N ++H +H
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIH 35
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C +TF QK +L H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAH 31
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F +L RH +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVH 35
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 4.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ KC EC K F + +L H+ LH
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 8 NPYLCDHCDQTFRQKQLLKRHVNLY 32
PY+C HC + F L+RHV ++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK H+C EC K+F L+ H +H
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIH 35
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPS 41
IH P+ C++C +Q L +H+ +H P S
Sbjct: 31 IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C EC KAF +L++H +H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRH 28
+NP+ C CD+ F Q+ L +H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQH 31
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC KAF + +H LH
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLH 35
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
S +K + C EC KAF K L+ H +H +S
Sbjct: 5 SSGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
S EK + C EC K F K L+ H +H
Sbjct: 5 SSGEKPYGCNECGKDFSSKSYLIVHQRIH 33
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHDPD 72
EK KC EC KAF K L+ H H D
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 26.9 bits (58), Expect = 6.3, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHD 70
S EK + CP C F+ K + H+ HD
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
K ++C EC KAF L RH +H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 8.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F +L H +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIH 35
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC C K+FR+ +L H +H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIH 35
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F L +H +H
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIH 35
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 26.6 bits (57), Expect = 8.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLYH 33
+ PY C C + F Q L RH YH
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYH 36
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHD 70
EK ++C C KAF H+ +L H +H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHS 36
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYH 33
H + P+ CD C + F + KRH ++ H
Sbjct: 26 HTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.2 bits (56), Expect = 9.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC KAF +L H +H
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIH 35
>pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|B Chain B, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|C Chain C, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|D Chain D, Crystal Structure Of Etd97n-Ehred Complex
Length = 364
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 128 YVVLEVIQVQSEDGTQQNVAVVQSEDGTQQN 158
++ E ++VQ E GT++ V +V +E G +N
Sbjct: 264 FIGREALEVQREHGTEKLVGLVMTEKGVLRN 294
>pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|B Chain B, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|C Chain C, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|D Chain D, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8J|A Chain A, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|B Chain B, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|C Chain C, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|D Chain D, Crystal Structure Of Et-Ehred Complex
Length = 364
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 128 YVVLEVIQVQSEDGTQQNVAVVQSEDGTQQN 158
++ E ++VQ E GT++ V +V +E G +N
Sbjct: 264 FIGREALEVQREHGTEKLVGLVMTEKGVLRN 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,795,974
Number of Sequences: 62578
Number of extensions: 162016
Number of successful extensions: 709
Number of sequences better than 100.0: 151
Number of HSP's better than 100.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 251
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)