RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9958
(181 letters)
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 61.8 bits (151), Expect = 2e-13
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + PY C HCD+TFRQKQLL H YH+P++VP C +C K F + +
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP-----AAFVCSKCGKTFTRRNTM 63
Query: 63 LRHMTLH 69
RH
Sbjct: 64 ARHADNC 70
Score = 34.0 bits (79), Expect = 0.004
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 9/48 (18%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAF 56
++C C +TF ++ + RH + + +
Sbjct: 47 AFVCSKCGKTFTRRNTMARHADN-CA--------GPDGVEGENSGPSS 85
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 59.3 bits (144), Expect = 1e-12
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL 68
C+ C T RQK L H H + C C K F ++ H +
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRK-HAE-----TVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 69 HDPDSELIEQQ 79
P L Q+
Sbjct: 61 SHPALLLAPQE 71
Score = 41.6 bits (98), Expect = 5e-06
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+C C R K +L H H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKH 30
Score = 37.8 bits (88), Expect = 2e-04
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 1 MLIHIDQN---PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEK 45
H + + C+ C + F + + H + H + P
Sbjct: 27 QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 57.9 bits (141), Expect = 3e-12
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
++ Y C C + + RH H K + CP C K F K N+
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSH-------KRNVKVYPCPFCFKEFTRKDNM 56
Query: 63 LRHMTLH 69
H+ +
Sbjct: 57 TAHVKII 63
Score = 29.8 bits (68), Expect = 0.087
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYH 33
Y C C + F +K + HV + H
Sbjct: 40 VYPCPFCFKEFTRKDNMTAHVKIIH 64
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 56.0 bits (136), Expect = 2e-11
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
H + PY C C F Q +K H+ H + CP C K
Sbjct: 7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKH-------TENVAKFHCPHCDTVIARKS 59
Query: 61 NLLRHM-TLH 69
+L H+ H
Sbjct: 60 DLGVHLRKQH 69
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 55.0 bits (133), Expect = 3e-10
Identities = 18/67 (26%), Positives = 27/67 (40%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
I Q CD+TF L HV + H + +CP K+F+ K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 63 LRHMTLH 69
+ H+ +H
Sbjct: 79 VNHIRVH 85
Score = 35.3 bits (82), Expect = 0.004
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 1 MLIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAF 56
+ +H + P+ C C + F + + LK H H EK KC C + F
Sbjct: 82 IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HT--------GEKPFKCEFEGCDRRF 132
Query: 57 RHKGNLLRHMTLH 69
+ + +HM +H
Sbjct: 133 ANSSDRKKHMHVH 145
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 52.5 bits (127), Expect = 4e-10
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
+P C C + K L+ H + H ++ KC C + NL
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERI-HC--------TDRPFKCNYCSFDTKQPSNLS 54
Query: 64 RHMTLH 69
+HM
Sbjct: 55 KHMKKF 60
Score = 34.4 bits (80), Expect = 0.002
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRH 28
IH P+ C++C +Q L +H
Sbjct: 29 ERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 52.6 bits (127), Expect = 2e-09
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC-----KKAFRHKGNLL 63
D C Q F ++ L H+N H H + K C + F+ + L+
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHI-H-----GERKEFVCHWGGCSRELRPFKAQYMLV 56
Query: 64 RHMTLH 69
HM H
Sbjct: 57 VHMRRH 62
Score = 44.5 bits (106), Expect = 2e-06
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 1 MLIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAF 56
+ H + PY+C+H C + F +H N H+ EK + C P C K +
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS--------NEKPYVCKLPGCTKRY 140
Query: 57 RHKGNLLRHMTLH 69
+L +H+
Sbjct: 141 TDPSSLRKHVKTV 153
Score = 36.0 bits (84), Expect = 0.002
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E + C + F + L+ H+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSE 26
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 50.5 bits (122), Expect = 3e-09
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
IH D PY C +C + F QK +K+H H EK HKC C KAF NL
Sbjct: 23 IHSDTRPYPCQYCGKRFHQKSDMKKH----TFIH-----TGEKPHKCQVCGKAFSQSSNL 73
Query: 63 LRHMTLH 69
+ H H
Sbjct: 74 ITHSRKH 80
Score = 40.1 bits (95), Expect = 2e-05
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
+ C C ++F++ L H L H+ + + C C K F K ++ +H +H
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHS--------DTRPYPCQYCGKRFHQKSDMKKHTFIH 52
Score = 33.5 bits (78), Expect = 0.006
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 46 THKCPECKKAFRHKGNLLRHMTLH 69
+ C C K+F+ L H+ +H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIH 24
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 51.4 bits (124), Expect = 4e-09
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH--VNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
H + P+ C C + + +K+ L H N + E+ C C++ FR +
Sbjct: 29 KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR--------SEQVFTCSVCQETFRRRM 80
Query: 61 NLLRHMTLH 69
L HM H
Sbjct: 81 ELRLHMVSH 89
Score = 49.8 bits (120), Expect = 1e-08
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
++ + + C C +TFR++ L+ H H E +KC C + F K +L
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLH----MVSH-----TGEMPYKCSSCSQQFMQKKDL 110
Query: 63 LRHMT 67
HM
Sbjct: 111 QSHMI 115
Score = 48.7 bits (117), Expect = 4e-08
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
C C + F K LK H + H EK +CP+C K + K NLL H
Sbjct: 7 GVECPTCHKKFLSKYYLKVH----NRKH-----TGEKPFECPKCGKCYFRKENLLEHE 55
Score = 38.6 bits (91), Expect = 2e-04
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+CP C K F K L H H
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKH 30
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 49.4 bits (119), Expect = 4e-09
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
++C+ C + F +++ LKRH + H EK + C C +AF + L+RH
Sbjct: 2 SFVCEVCTRAFARQEHLKRH----YRSH-----TNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 34.8 bits (81), Expect = 0.001
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
++ C C +AF + +L RH H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 49.5 bits (119), Expect = 6e-09
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 9 PYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLR 64
CD C + F +Q L H H +K+ CPE C K+F K +L
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHI--------HQKSFSCPEPACGKSFNFKKHLKE 58
Query: 65 HMTLH 69
HM LH
Sbjct: 59 HMKLH 63
Score = 32.9 bits (76), Expect = 0.009
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 4 HIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAF 56
HI Q + C C ++F K+ LK H+ L H+ + + C +
Sbjct: 33 HIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HS--------DTRDYICEFSGPSS 78
Score = 31.8 bits (73), Expect = 0.027
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 44 EKTHKC--PECKKAFRHKGNLLRHM 66
C P C + F ++ L H
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHHK 29
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 49.4 bits (119), Expect = 7e-09
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
+ PY CD C +FR K L H H EK ++C C F NL
Sbjct: 11 MTHSDKPYKCDRCQASFRYKGNLASH----KTVH-----TGEKPYRCNICGAQFNRPANL 61
Query: 63 LRHMTLH 69
H +H
Sbjct: 62 KTHTRIH 68
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 49.7 bits (120), Expect = 1e-08
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H D+ PY CD C + FR++ L+ H H KEK KC EC K F L
Sbjct: 39 THTDERPYTCDICHKAFRRQDHLRDH----RYIH-----SKEKPFKCQECGKGFCQSRTL 89
Query: 63 LRHMTLH 69
H TLH
Sbjct: 90 AVHKTLH 96
Score = 46.3 bits (111), Expect = 2e-07
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
+ ++C C + F + L H H E+ + C C KAFR + +L
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIH----ERTH-----TDERPYTCDICHKAFRRQDHL 61
Query: 63 LRHMTLH 69
H +H
Sbjct: 62 RDHRYIH 68
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 49.0 bits (118), Expect = 1e-08
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
+ IH Q P+ C C + F + L H+ H EK C C + F
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT--------GEKPFACDICGRKFARSD 76
Query: 61 NLLRHMTLH 69
RH +H
Sbjct: 77 ERKRHTKIH 85
Score = 42.8 bits (102), Expect = 3e-06
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 9 PYLC--DHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
PY C + CD+ F Q L RH+ + H +K +C C + F +L H+
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRI-HT--------GQKPFQCRICMRNFSRSDHLTTHI 54
Query: 67 TLH 69
H
Sbjct: 55 RTH 57
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 44 EKTHKCP--ECKKAFRHKGNLLRHMTLH 69
E+ + CP C + F G+L RH+ +H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIH 29
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 48.3 bits (116), Expect = 2e-08
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 21/67 (31%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH------KCPECKKAFRHKGNL 62
P+ C C + F + L H +TH C C + F
Sbjct: 3 PFQCRICMRNFSRSDHLTTH---------------IRTHTGEKPFACDICGRKFARSDER 47
Query: 63 LRHMTLH 69
RH +
Sbjct: 48 KRHRDIQ 54
Score = 47.1 bits (113), Expect = 7e-08
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
+ H + P+ CD C + F + KRH ++ + + ++
Sbjct: 23 IRTHTGEKPFACDICGRKFARSDERKRHRDI-QH---------ILPILEDKVEELLSKNY 72
Query: 61 NLLRHMT 67
+L +
Sbjct: 73 HLENEVA 79
Score = 35.2 bits (82), Expect = 0.002
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
K +C C + F +L H+ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 48.6 bits (117), Expect = 2e-08
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL 68
P+ C+ C + F +K LK H H K +KC C A +L +H+ +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTH----MRCH-----TGVKPYKCKTCDYAAADSSSLNKHLRI 58
Query: 69 H 69
H
Sbjct: 59 H 59
Score = 48.2 bits (116), Expect = 3e-08
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H PY C CD L +H+ + H+ E+ KC C A R+ L
Sbjct: 30 CHTGVKPYKCKTCDYAAADSSSLNKHLRI-HS--------DERPFKCQICPYASRNSSQL 80
Query: 63 LRHMTLH 69
H+ H
Sbjct: 81 TVHLRSH 87
Score = 38.9 bits (92), Expect = 7e-05
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
HKC C K F K L HM H
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCH 31
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 47.9 bits (115), Expect = 6e-08
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 9 PYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
C H C + FR +++H++ H + H C EC KAF L RH
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHT-HG---------PRVHVCAECGKAFVESSKLKRHQ 54
Query: 67 TLH 69
+H
Sbjct: 55 LVH 57
Score = 40.6 bits (96), Expect = 3e-05
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 1 MLIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP--ECKKAF 56
L+H + P+ C C + F L+ HV + H ++ + CP C K F
Sbjct: 54 QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HT--------GDRPYVCPFDGCNKKF 104
Query: 57 RHKGNLLRHMTLH 69
NL H+ H
Sbjct: 105 AQSTNLKSHILTH 117
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 47.1 bits (113), Expect = 7e-08
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL 68
C+ C + FR L RH H+ EK + CP C F+ K + H+
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLS-HS--------GEKPYSCPVCGLRFKRKDRMSYHVRS 57
Query: 69 H 69
H
Sbjct: 58 H 58
Score = 42.9 bits (102), Expect = 3e-06
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 23/74 (31%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH--------KCPEC 52
L H + PY C C F++K + H ++H C C
Sbjct: 27 KLSHSGEKPYSCPVCGLRFKRKDRMSYH---------------VRSHDGSVGKPYICQSC 71
Query: 53 KKAFRHKGNLLRHM 66
K F +L H+
Sbjct: 72 GKGFSRPDHLNGHI 85
Score = 39.0 bits (92), Expect = 7e-05
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
C C K FR +L RH H
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSH 30
Score = 25.1 bits (56), Expect = 7.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYH 33
PY+C C + F + L H+ H
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVH 89
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 49.0 bits (118), Expect = 8e-08
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
+ + PY C C ++F + L H H EK +KCPEC K+F K +L
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEH----QRTH-----TGEKPYKCPECGKSFSDKKDL 65
Query: 63 LRHMTLH 69
RH H
Sbjct: 66 TRHQRTH 72
Score = 48.6 bits (117), Expect = 9e-08
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + PY C C ++F K+ L RH H EK +KCPEC K+F + NL
Sbjct: 43 THTGEKPYKCPECGKSFSDKKDLTRH----QRTH-----TGEKPYKCPECGKSFSQRANL 93
Query: 63 LRHMTLH 69
H H
Sbjct: 94 RAHQRTH 100
Score = 48.6 bits (117), Expect = 9e-08
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + PY C C ++F Q L+ H H EK +KCPEC K+F + NL
Sbjct: 99 THTGEKPYACPECGKSFSQLAHLRAH----QRTH-----TGEKPYKCPECGKSFSREDNL 149
Query: 63 LRHMTLH 69
H H
Sbjct: 150 HTHQRTH 156
Score = 48.2 bits (116), Expect = 1e-07
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
H + PY C C ++F ++ L H H EK +KCPEC K+F + L
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTH----QRTH-----TGEKPYKCPECGKSFSRRDAL 177
Query: 63 LRHMTLH 69
H H
Sbjct: 178 NVHQRTH 184
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 46.3 bits (111), Expect = 8e-08
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
IH + PY C C + F + +L +H H EK +KC EC KAF L
Sbjct: 8 IHSGEKPYGCVECGKAFSRSSILVQH----QRVH-----TGEKPYKCLECGKAFSQNSGL 58
Query: 63 LRHMTLH 69
+ H +H
Sbjct: 59 INHQRIH 65
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 46.7 bits (112), Expect = 2e-07
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAFRH 58
H P+ C C + F + LK H H EK C P C+K F
Sbjct: 58 QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HT--------GEKPFSCRWPSCQKKFAR 108
Query: 59 KGNLLRHMTLH 69
L+RH +H
Sbjct: 109 SDELVRHHNMH 119
Score = 43.7 bits (104), Expect = 3e-06
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 1 MLIHIDQNPYLCD--HCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRH 58
H + PY CD C++ F + LKRH H K +C C++ F
Sbjct: 28 SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HT--------GVKPFQCKTCQRKFSR 78
Query: 59 KGNLLRHMTLH 69
+L H H
Sbjct: 79 SDHLKTHTRTH 89
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 25/71 (35%)
Query: 9 PYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH------KC--PECKKAFRH 58
P++C + C++ + + L+ H + H +C +C++ F
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMH---------------SRKHTGEKPYQCDFKDCERRFSR 50
Query: 59 KGNLLRHMTLH 69
L RH H
Sbjct: 51 SDQLKRHQRRH 61
Score = 33.6 bits (78), Expect = 0.010
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 44 EKTHKCPE--CKKAFRHKGNLLRHMTLH 69
++ C C K + +L H H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKH 31
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 45.3 bits (107), Expect = 4e-07
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC-----PECKKAFR 57
I Q CD+TF L HV + H P++ H C P K+F+
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG-----PEQNNHVCYWEECPREGKSFK 73
Query: 58 HKGNLLRHMTLH 69
K L+ H+ +H
Sbjct: 74 AKYKLVNHIRVH 85
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 43.7 bits (104), Expect = 6e-07
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 8/54 (14%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAF 56
PY+C C + F + L H+ H E+ HKC
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT--------SERPHKCQVWVSGP 51
Score = 34.9 bits (81), Expect = 0.001
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHM 66
K + C C K F +L H+
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHI 32
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 44.0 bits (105), Expect = 7e-07
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
++ Y CD C ++F L +H H EK +KC EC KAF + +L
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKH----RRTH-----TGEKPYKCDECGKAFIQRSHL 62
Query: 63 LRHMTLH 69
+ H +H
Sbjct: 63 IGHHRVH 69
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 44.7 bits (107), Expect = 9e-07
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
+H+ PY C C + F+ K L H+ + H K ++C C K F + +
Sbjct: 31 MHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HT--------GIKPYECNICAKRFMWRDSF 81
Query: 63 LRHM 66
RH+
Sbjct: 82 HRHV 85
Score = 44.0 bits (105), Expect = 2e-06
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
Y C C ++F K RH+++ H + + C C K F+ K +L
Sbjct: 4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSM-HL--------GLRPYGCGVCGKKFKMKHHL 53
Query: 63 LRHMTLH 69
+ HM +H
Sbjct: 54 VGHMKIH 60
Score = 42.0 bits (100), Expect = 8e-06
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
IH PY C+ C + F + RHV + K+++ + ++
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSFHRHV---TS--------CTKSYEAAKAEQNTTEASGP 107
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 44.4 bits (104), Expect = 1e-06
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
+ Y C +C + HV+ H P ++ C EC + L
Sbjct: 13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEH-----PNVVLNSSYVCVECNFLTKRYDALS 67
Query: 64 RHMTLHDPDSELIEQQVA 81
H + P E + +
Sbjct: 68 EHNLKYHPGEENFKLTMV 85
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 44.4 bits (104), Expect = 1e-06
Identities = 15/103 (14%), Positives = 24/103 (23%), Gaps = 24/103 (23%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNL-YHNPH----------------------- 36
I + + C C + L H+N H
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLE 70
Query: 37 YVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ 79
+K KC C +F +L HM ++
Sbjct: 71 MEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS 113
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 41.3 bits (98), Expect = 3e-06
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C C FRH L H+ +H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 32.1 bits (74), Expect = 0.009
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 9 PYLCDHCDQTFRQKQLLKRHV 29
PY C+ C FR Q LK H+
Sbjct: 11 PYPCEICGTRFRHLQTLKSHL 31
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 42.6 bits (101), Expect = 4e-06
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 3 IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
H + PY C CD F + L RH H K +C C ++F
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRK-HT--------GAKPFQCGVCNRSFSRSD 89
Query: 61 NLLRHMTLH 69
+L HM H
Sbjct: 90 HLALHMKRH 98
Score = 33.0 bits (76), Expect = 0.013
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 39 PPSPKEKTHKC--PECKKAFRHKGNLLRHMTLH 69
P K + H C P C K + +L H+ H
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTH 40
Score = 32.6 bits (75), Expect = 0.015
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 7 QNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAFRHKGNL 62
+ + CD+ C + + + LK H+ H EK +KC C F L
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRT-HT--------GEKPYKCTWEGCDWRFARSDEL 63
Query: 63 LRHMTLH 69
RH H
Sbjct: 64 TRHYRKH 70
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 43.0 bits (100), Expect = 6e-06
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
++C C F LK+H+ E T CP CKK F + L H+
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRY-----------TEHTKVCPVCKKEFTSTDSALDHV 120
Score = 30.7 bits (68), Expect = 0.14
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHN 34
I ++ +C C + F HV HN
Sbjct: 94 IRYTEHTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 28.7 bits (63), Expect = 0.60
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 21 QKQLLKRHVNLY-HNPHYVPPSPKEKTHK---------CPECKKAFRHKGNLLRHMTLH 69
QK+L++ V HNP + S CP C F +L +H+
Sbjct: 39 QKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT 97
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 39.5 bits (93), Expect = 4e-05
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 23/72 (31%)
Query: 3 IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH------KCPECKK 54
H Q PY C H CD+ F LKRH EK H K C
Sbjct: 25 SHTQQLPYECPHEGCDKRFSLPSRLKRH---------------EKVHAGYPCKKDDSCSF 69
Query: 55 AFRHKGNLLRHM 66
+ L+H+
Sbjct: 70 VGKTWTLYLKHV 81
Score = 34.1 bits (79), Expect = 0.004
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 10 YLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAFRHKGNLLRH 65
Y+C C + F++ LK H H ++ ++C C K F L RH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFS-HT--------QQLPYECPHEGCDKRFSLPSRLKRH 52
Query: 66 MTLH 69
+H
Sbjct: 53 EKVH 56
Score = 24.9 bits (55), Expect = 6.1
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYH 33
+H D C + L +HV H
Sbjct: 55 VHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 38.8 bits (91), Expect = 5e-05
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 9 PYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
PY C CD+ F + L RH+ + H +K +C C + F +L H+
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRI-HT--------GQKPFQCRICMRNFSRSDHLTTHI 69
Query: 67 TLH 69
H
Sbjct: 70 RTH 72
Score = 28.4 bits (64), Expect = 0.33
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHV 29
+ IH Q P+ C C + F + L H+
Sbjct: 41 IRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 5e-05
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EKT KC EC F +L H +H
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 29.4 bits (67), Expect = 0.083
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ + + C CD F Q L+ H
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 5e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ H+C +C K F N ++H +H
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 27.1 bits (61), Expect = 0.61
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ + C C + F Q +H
Sbjct: 6 SGHGERGHRCSDCGKFFLQASNFIQH 31
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 40.7 bits (96), Expect = 6e-05
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 1 MLIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAF 56
L H + + CD CD F K +K+H N +HN + C C KAF
Sbjct: 64 SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV-------YVCHFENCGKAF 116
Query: 57 RHKGNLLRHMTLH 69
+ L H H
Sbjct: 117 KKHNQLKVHQFSH 129
Score = 37.2 bits (87), Expect = 0.001
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 3 IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRH 58
+ + Y+C C + + L+ H+ H EK C E C+K F
Sbjct: 6 LPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HT--------GEKPFPCKEEGCEKGFTS 56
Query: 59 KGNLLRHMTLH 69
+L RH H
Sbjct: 57 LHHLTRHSLTH 67
Score = 36.8 bits (86), Expect = 0.001
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 23/72 (31%)
Query: 3 IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH------KCPECKK 54
H Q PY C H CD+ F LKRH EK H K C
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRH---------------EKVHAGYPCKKDDSCSF 172
Query: 55 AFRHKGNLLRHM 66
+ L+H+
Sbjct: 173 VGKTWTLYLKHV 184
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 8e-05
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E C EC K F HK NL+ H +H
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 27.1 bits (61), Expect = 0.55
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+NP++C C + F K L H
Sbjct: 6 SGTGENPFICSECGKVFTHKTNLIIH 31
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 38.2 bits (88), Expect = 8e-05
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
Y+C+ C ++ +LK+H+ + + + + C C +F+ KGNL +HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTD---------VRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 30.8 bits (69), Expect = 0.035
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLY 32
+ H D PY C +C+ +F+ K L +H+
Sbjct: 21 IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 37.7 bits (88), Expect = 8e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C ECK+ F L++H +H
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 26.5 bits (59), Expect = 0.90
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C +TF L +H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH 29
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 37.3 bits (87), Expect = 1e-04
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E + C +C K+F +G+L H
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 28.8 bits (65), Expect = 0.13
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 9 PYLCDHCDQTFRQKQLLKRH 28
PYLC C ++F Q+ L H
Sbjct: 11 PYLCGQCGKSFTQRGSLAVH 30
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 38.1 bits (88), Expect = 1e-04
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 16/67 (23%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
IH+ C C F ++ L R KT C +C+K + L
Sbjct: 12 IHLGDRSQKCSKCGIIFIRRSTLSRR----------------KTPMCEKCRKDSCQEAAL 55
Query: 63 LRHMTLH 69
+
Sbjct: 56 NKDEGNE 62
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C EC KAF + NL H +H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 27.1 bits (61), Expect = 0.47
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + F + L H
Sbjct: 6 SGTGEKPYRCAECGKAFTDRSNLFTH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK KC C K+F + L RH +H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 29.0 bits (66), Expect = 0.11
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ CD C ++F + L RH
Sbjct: 6 SGTGEKPFKCDICGKSFCGRSRLNRH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC KAFR NL H +H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 27.9 bits (63), Expect = 0.28
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + FR L H
Sbjct: 6 SGTGEKPYKCNECGKAFRAHSNLTTH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC +C K + + NL H +H
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 27.5 bits (62), Expect = 0.37
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + + ++ L H
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.2 bits (87), Expect = 1e-04
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK KC EC KAF K L+ H H
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 26.4 bits (59), Expect = 1.1
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P C C + F K L H
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 37.1 bits (87), Expect = 1e-04
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+K +C C K+FR KGNL+ H +H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 31.0 bits (71), Expect = 0.023
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
Q P+ C HC ++FR K L H
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.2 bits (87), Expect = 1e-04
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK+H C EC K F + L H +H
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVH 35
Score = 28.7 bits (65), Expect = 0.14
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ + CD C + F L+ H
Sbjct: 6 SGSGEKSHTCDECGKNFCYISALRIH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
K+H+C EC + F K +L +H +H
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 27.1 bits (61), Expect = 0.62
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ C C + F K L +H
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHLNQH 31
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 38.3 bits (90), Expect = 1e-04
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 3 IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
H + PY CD C F + L RH H + +C +C +AF
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRK-HT--------GHRPFQCQKCDRAFSRSD 79
Query: 61 NLLRHMTLH 69
+L HM H
Sbjct: 80 HLALHMKRH 88
Score = 35.2 bits (82), Expect = 0.002
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAFRHKGN 61
+ C +T+ + LK H+ H EK + C C F
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT-HT--------GEKPYHCDWDGCGWKFARSDE 52
Query: 62 LLRHMTLH 69
L RH H
Sbjct: 53 LTRHYRKH 60
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 36.8 bits (86), Expect = 1e-04
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
++ ++C EC K+FR KG+L H +H
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIH 33
Score = 27.9 bits (63), Expect = 0.27
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 9 PYLCDHCDQTFRQKQLLKRH 28
Y C C ++FRQK L H
Sbjct: 10 VYECQECGKSFRQKGSLTLH 29
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC +C K+F K L H H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 29.0 bits (66), Expect = 0.10
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C ++F K L+ H
Sbjct: 6 SGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC KAF + NL++H +H
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 27.1 bits (61), Expect = 0.48
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY+C C + F + L +H
Sbjct: 6 SGTGEKPYICAECGKAFTIRSNLIKH 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.3 bits (85), Expect = 2e-04
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC C F +L H+ +H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 28.3 bits (64), Expect = 0.18
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 9 PYLCDHCDQTFRQKQLLKRH 28
PY C+ C F Q L+ H
Sbjct: 11 PYKCETCGARFVQVAHLRAH 30
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 2e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+KC +C+K+F K LL H +H
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 29.8 bits (68), Expect = 0.066
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
NPY C C+++F K L H
Sbjct: 6 SGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 2e-04
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K FRH L RH +H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 28.2 bits (64), Expect = 0.23
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + FR L RH
Sbjct: 6 SGTGEKPYKCNECGKVFRHNSYLSRH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 2e-04
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +C EC+KAF K NL+ H H
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 27.1 bits (61), Expect = 0.53
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C C + F K L H
Sbjct: 6 SGTGEKPFECSECQKAFNTKSNLIVH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 2e-04
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K ++ + +L H +H
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 27.9 bits (63), Expect = 0.31
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + ++++ L H
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 2e-04
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ + C C KAF + NL++H +H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 26.7 bits (60), Expect = 0.74
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY+C C + F + L +H
Sbjct: 6 SGTGERPYICTVCGKAFTDRSNLIKH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 2e-04
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC C K+FR+ +L H +H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 28.2 bits (64), Expect = 0.22
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY CD C ++FR L H
Sbjct: 6 SGTGEKPYKCDVCHKSFRYGSSLTVH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F + +L H +H
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 27.1 bits (61), Expect = 0.52
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F ++ L H
Sbjct: 6 SGTGEKPYKCEECGKGFICRRDLYTH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC KAFR + +L H H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
Score = 28.7 bits (65), Expect = 0.16
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + FR + L H
Sbjct: 6 SGTGEKPYKCNECGKAFRARSSLAIH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +C EC F +L +H+ H
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 26.0 bits (58), Expect = 1.5
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 9 PYLCDHCDQTFRQKQLLKRH 28
P+ C C F L +H
Sbjct: 12 PFQCKECGMNFSWSCSLFKH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC KAF H L H +H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 26.3 bits (59), Expect = 1.00
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F L+ H
Sbjct: 6 SGTGEKPYNCEECGKAFIHDSQLQEH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 3e-04
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC +C K + K NL H +H
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 27.1 bits (61), Expect = 0.48
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + + K L H
Sbjct: 6 SGTGEKPYKCEKCGKGYNSKFNLDMH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 3e-04
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C EC K+F L +H H
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 26.0 bits (58), Expect = 1.3
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C ++F L +H
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 36.0 bits (84), Expect = 3e-04
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK C C+KAF K LL H H
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 27.5 bits (62), Expect = 0.35
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C C++ F K L H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVH 29
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 3e-04
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ + C EC K F +L+ H+ H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 25.6 bits (57), Expect = 1.8
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F + L H
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 3e-04
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
K + C EC KAF +L H +H
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 26.7 bits (60), Expect = 0.86
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
PY+C+ C + F L H
Sbjct: 6 SGTGVKPYMCNECGKAFSVYSSLTTH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 35.6 bits (83), Expect = 4e-04
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C +C KAF KG+L+ H+ +H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 28.7 bits (65), Expect = 0.14
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY CD C + F QK L H
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVH 30
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 5e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C EC KAF K NL +H +H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 27.9 bits (63), Expect = 0.26
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + F QK L +H
Sbjct: 6 SGTGEKPYRCGECGKAFAQKANLTQH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 5e-04
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+K ++C EC+K F G+L +H +H
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 27.9 bits (63), Expect = 0.33
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C +TF Q L +H
Sbjct: 6 SGSGKKPYECKECRKTFIQIGHLNQH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 5e-04
Identities = 10/26 (38%), Positives = 10/26 (38%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK KC EC K F H H
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 25.6 bits (57), Expect = 1.6
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C+ C + F H
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 5e-04
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C C KAF L+RH +H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 26.7 bits (60), Expect = 0.64
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY+CD+C + F L RH
Sbjct: 6 SGSGEKPYVCDYCGKAFGLSAELVRH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 6e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C C+KAF H +L +H +H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 26.7 bits (60), Expect = 0.78
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY CD C + F L +H
Sbjct: 6 SGTGEKPYECDVCRKAFSHHASLTQH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 6e-04
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC KAF + +H LH
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 25.6 bits (57), Expect = 2.0
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + F +H
Sbjct: 6 SGTGEKPYKCMECGKAFGDNSSCTQH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 6e-04
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
K + C EC KAFR K L+ H H
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 26.3 bits (59), Expect = 0.96
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
PY+C+ C + FR K L H
Sbjct: 6 SGTGMKPYVCNECGKAFRSKSYLIIH 31
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 6e-04
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
K++ C EC KAF +L RH +H
Sbjct: 10 SKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 29.5 bits (67), Expect = 0.081
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
D Y C+ C + F + L RH
Sbjct: 6 SGTDSKSYNCNECGKAFTRIFHLTRH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 6e-04
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK C +C KAF L +H +H
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 25.9 bits (58), Expect = 1.4
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C C + F L +H
Sbjct: 6 SGTGEKPFDCIDCGKAFSDHIGLNQH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 7e-04
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK KC EC K++ + +L +H +H
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 28.3 bits (64), Expect = 0.24
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C C +++ Q+ L +H
Sbjct: 6 SGTGEKPFKCGECGKSYNQRVHLTQH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 35.2 bits (82), Expect = 7e-04
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK KC EC K F + L H LH
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 25.9 bits (58), Expect = 1.2
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C C + F ++ L H
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.1 bits (82), Expect = 7e-04
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K FR +L RH +H
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 28.2 bits (64), Expect = 0.25
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + FR+ L RH
Sbjct: 6 SGTGEKPYKCHECGKVFRRNSHLARH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 35.2 bits (82), Expect = 7e-04
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
++ ++C EC KAF+ K +L+ H H
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSH 35
Score = 26.3 bits (59), Expect = 0.98
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
Q PY C C + F+ K L H
Sbjct: 6 SGTGQRPYECIECGKAFKTKSSLICH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 7e-04
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C C KAF H+ +L H +H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 26.7 bits (60), Expect = 0.74
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + F +Q L H
Sbjct: 6 SGTGEKPYECSVCGKAFSHRQSLSVH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 7e-04
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
K +C EC KAF K L H +H
Sbjct: 10 GKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 26.7 bits (60), Expect = 0.85
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ C C + F +K L H
Sbjct: 6 SGTGGKHFECTECGKAFTRKSTLSMH 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 7e-04
Identities = 26/152 (17%), Positives = 44/152 (28%), Gaps = 52/152 (34%)
Query: 49 CPECKKAFRHKGNLLRHMTLHDPDSELIE---QQVALKLGRQKKVHIIDGHKVEVIPDDE 105
+ +K F+ T L Q AL L + E +
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL-----MEKA---AFEDL---- 1747
Query: 106 EEEEGEETEEEEEGGGEDD----GH---QYVVL----EVIQVQSED--------GTQQNV 146
+ +G D GH +Y L +V+ + E G V
Sbjct: 1748 ----------KSKGLIPADATFAGHSLGEYAALASLADVMSI--ESLVEVVFYRGMTMQV 1795
Query: 147 AVVQSEDGTQQN--VAVVPASSLMGMGATINE 176
AV + E G +A+ P + A+ ++
Sbjct: 1796 AVPRDELGRSNYGMIAINPGR----VAASFSQ 1823
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 7e-04
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC KAF +L H +H
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 25.5 bits (57), Expect = 1.7
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + F + L H
Sbjct: 6 SGSGEKPYKCSECGKAFHRHTHLNEH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 7e-04
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC K F K L H H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 27.5 bits (62), Expect = 0.40
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C +TF QK +L H
Sbjct: 6 SGSGEKPYGCNECGKTFSQKSILSAH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 34.9 bits (81), Expect = 8e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC K+FR LL+H +H
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 29.1 bits (66), Expect = 0.11
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C ++FR L +H
Sbjct: 6 SGTGEKPYNCKECGKSFRWASCLLKH 31
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 36.4 bits (83), Expect = 8e-04
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
+ +N +C +C F +L + H + + K C EC + F+ ++
Sbjct: 37 RLCRNAAVCPYCSLRFFSPELKQEHES----------KCEYKKLTCLECMRTFKSSFSIW 86
Query: 64 RH-MTLHDPDS 73
RH + +H+ ++
Sbjct: 87 RHQVEVHNQNN 97
Score = 32.2 bits (72), Expect = 0.030
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSP 42
+ C C +TF+ + RH HN + + P+
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 8e-04
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+K KC ECKK F +L H +H
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 28.2 bits (64), Expect = 0.24
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ + C+ C +TF Q L H
Sbjct: 6 SGAGKKLFKCNECKKTFTQSSSLTVH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 34.8 bits (81), Expect = 8e-04
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
K + C +C K F K L+ H H
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 26.7 bits (60), Expect = 0.63
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
PY C C +TF K L H
Sbjct: 6 SGTGVKPYGCSQCAKTFSLKSQLIVH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 8e-04
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK KC EC KAFR +L H+ +H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 28.2 bits (64), Expect = 0.20
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C C + FRQ L H
Sbjct: 6 SGSGEKPFKCKECGKAFRQNIHLASH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 8e-04
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC KAF L RH +H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 27.5 bits (62), Expect = 0.36
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F Q L RH
Sbjct: 6 SGTGEKPYKCNECGKAFSQTSKLARH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 8e-04
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC KAF K L+ HM H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 26.7 bits (60), Expect = 0.86
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + F K L H
Sbjct: 6 SGAGEKPYGCSECGKAFSSKSYLIIH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 34.8 bits (81), Expect = 9e-04
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +C EC K+F L H +H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35
Score = 26.3 bits (59), Expect = 1.1
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C C ++F L H
Sbjct: 6 SGTGEKPFECAECGKSFSISSQLATH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 9e-04
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ KC EC K F + +L H+ LH
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 26.7 bits (60), Expect = 0.85
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C+ C + F ++ L H
Sbjct: 6 SGSGERPFKCNECGKGFGRRSHLAGH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E ++C EC K F K L+ H H
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 25.2 bits (56), Expect = 2.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+NPY C C + F +K L H
Sbjct: 6 SGTGENPYECCECGKVFSRKDQLVSH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC K+F LL+H LH
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 26.3 bits (59), Expect = 1.0
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ Y C C ++F + L +H
Sbjct: 6 SGTGEKLYNCKECGKSFSRAPCLLKH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C EC+KAF K NL+ H H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 26.3 bits (59), Expect = 0.97
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F K L H
Sbjct: 6 SGTGEKPYECNECQKAFNTKSNLMVH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC C KAFR +L++H ++H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 27.5 bits (62), Expect = 0.40
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + FR L +H
Sbjct: 6 SGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ ++C EC KAF K L+ H +H
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIH 35
Score = 26.7 bits (60), Expect = 0.82
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ Y C C + F +K L H
Sbjct: 6 SGTGERHYECSECGKAFARKSTLIMH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C +C KAF + +L H +H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 27.9 bits (63), Expect = 0.29
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F + L H
Sbjct: 6 SGTGEKPYECNQCGKAFSVRSSLTTH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.001
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC +C KAF K L H H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 26.7 bits (60), Expect = 0.69
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + F +K L H
Sbjct: 6 SGTGEKPYKCSDCGKAFTRKSGLHIH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
K ++C EC KAF L RH +H
Sbjct: 10 GKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 27.5 bits (62), Expect = 0.40
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
PY C+ C + F Q L RH
Sbjct: 6 SGTGGKPYQCNECGKAFSQTSKLARH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E ++C EC KAF K L+ H H
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTH 33
Score = 25.2 bits (56), Expect = 2.5
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+NPY C C + F +K L H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISH 29
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 34.5 bits (79), Expect = 0.001
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 39 PPSPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
K C C K FR +L RH H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 30.7 bits (69), Expect = 0.028
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 6 DQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC 52
+ C+ C + FR L RH L H+ EK +
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHK-LSHS--------GEKPYSSGPS 46
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C C KAF +L +H+ +H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 27.1 bits (61), Expect = 0.62
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F L +H
Sbjct: 6 SGTGEKPYSCNVCGKAFVLSAHLNQH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK H+C EC K+F L+ H +H
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 25.2 bits (56), Expect = 2.3
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C C ++F L H
Sbjct: 6 SGTGEKPHECRECGKSFSFNSQLIVH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C EC KAF +L++H +H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 27.1 bits (61), Expect = 0.55
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + F Q L +H
Sbjct: 6 SGTGEKPYECKECGKAFSQTTHLIQH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E ++C EC KAF K L+ H H
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTH 35
Score = 26.3 bits (59), Expect = 0.94
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+NPY C C + F +K L H
Sbjct: 6 SGTGENPYECHECGKAFSRKYQLISH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.001
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC K+F K +L RH +H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 27.9 bits (63), Expect = 0.26
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY+C+ C ++F QK L RH
Sbjct: 6 SGTGEKPYICNECGKSFIQKSHLNRH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ HKC EC K+F +L++H +H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 26.7 bits (60), Expect = 0.73
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C+ C ++F Q L +H
Sbjct: 6 SGTGERPHKCNECGKSFIQSAHLIQH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F +L H +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 27.1 bits (61), Expect = 0.54
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F Q L H
Sbjct: 6 SGSGEKPYKCNECGKVFTQNSHLTNH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ ++C EC KAF K L H +H
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 27.9 bits (63), Expect = 0.33
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ Y C C + F QK L H
Sbjct: 6 SGTGERHYECSECGKAFIQKSTLSMH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F L +H +H
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 26.7 bits (60), Expect = 0.76
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ Y C+ C + F + L +H
Sbjct: 6 SGTGEKRYKCNECGKVFSRNSQLSQH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C +C K+F K L H +H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 27.9 bits (63), Expect = 0.30
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C ++F +K L H
Sbjct: 6 SGTGEKPYECSDCGKSFIKKSQLHVH 31
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 34.7 bits (80), Expect = 0.002
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 4 HIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAFRHK 59
++C H C +T+ + LK H H EK C C++ F
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HT--------GEKPFSCSWKGCERRFARS 62
Query: 60 GNLLRHMTLH 69
L RH H
Sbjct: 63 DELSRHRRTH 72
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.002
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F +L+RH +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 27.4 bits (62), Expect = 0.46
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F Q L RH
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLVRH 31
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.002
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK KC EC K F L H +H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 27.1 bits (61), Expect = 0.58
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C+ C + F Q L H
Sbjct: 6 SGSGEKPFKCEECGKRFTQNSQLHSH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.002
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C C KAF K +L +H H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 28.3 bits (64), Expect = 0.21
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C + F QK L +H
Sbjct: 6 SGTGEKPYECKVCSKAFTQKAHLAQH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 33.7 bits (78), Expect = 0.003
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 44 EKTHKCPECKKAFRHKGNLLRH 65
+K ++C EC KAF +L+RH
Sbjct: 10 KKPYECIECGKAFIQNTSLIRH 31
Score = 28.3 bits (64), Expect = 0.21
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYH 33
+ PY C C + F Q L RH YH
Sbjct: 6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 33.3 bits (77), Expect = 0.003
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C EC KAF K L+ H H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35
Score = 26.0 bits (58), Expect = 1.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F K LL H
Sbjct: 6 SGSGEKPYECNECGKAFIWKSLLIVH 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 33.3 bits (76), Expect = 0.003
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E KC +C + F + L++H H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 31.4 bits (71), Expect = 0.018
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRH 28
+NP+ C CD+ F Q+ L +H
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.003
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+K +KC EC K F +L RH +H
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 28.6 bits (65), Expect = 0.16
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F Q L RH
Sbjct: 6 SGTGKKPYKCNECGKVFTQNSHLARH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F +L H +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 28.3 bits (64), Expect = 0.18
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F Q L H
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLANH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.003
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F +L RH +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 28.6 bits (65), Expect = 0.17
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F Q L RH
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.004
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC C K F +L H +H
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 27.9 bits (63), Expect = 0.31
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ + Y CD C + F Q L+ H
Sbjct: 6 SGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.005
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +C EC K F +L H +H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 27.9 bits (63), Expect = 0.25
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P+ C+ C + F Q L H
Sbjct: 6 SGSGEKPFQCEECGKRFTQNSHLHSH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.006
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK +KC EC K F +L RH +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 28.6 bits (65), Expect = 0.14
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C+ C + F Q L RH
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARH 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.006
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C C K+F K L H +H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 27.5 bits (62), Expect = 0.40
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
+ PY C C ++F +K L H
Sbjct: 6 SGTGEKPYECSICGKSFTKKSQLHVH 31
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.4 bits (70), Expect = 0.015
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
+ T +C EC K FRH L+ H LH +S
Sbjct: 10 KTTSECQECGKIFRHSSLLIEHQALHAGES 39
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.016
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 43 KEKTHKCPECKKAFRHKGNLLRHMTLH 69
+EK+H+C EC + F +L+ H LH
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLH 35
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 30.4 bits (69), Expect = 0.027
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
++ C C +AF + +L RH H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 29.2 bits (66), Expect = 0.079
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 9 PYLCDHCDQTFRQKQLLKRHV 29
++C+ C + F +++ LKRH
Sbjct: 2 SFVCEVCTRAFARQEHLKRHY 22
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.7 bits (74), Expect = 0.034
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 22/66 (33%)
Query: 39 PPSPKEKTHK---------CPECKKAFRHKGNLLRHMTLHDPDS-ELIEQQVALKLGRQK 88
K + CPECK + ++ +++ L L
Sbjct: 5 ESIDKRAGRRGPNLNIVLTCPECKV---YPPKIVE-----RFSEGDVVCALCGLVLSD-- 54
Query: 89 KVHIID 94
++D
Sbjct: 55 --KLVD 58
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 29.8 bits (67), Expect = 0.038
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHN 34
Y C C++ F ++ LL RH H+
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 24.8 bits (54), Expect = 2.8
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 45 KTHKCPECKKAFRHKGNLLRHM-TLH 69
K + C C +AF + L+RH +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.5 bits (70), Expect = 0.039
Identities = 11/48 (22%), Positives = 15/48 (31%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE 51
Q+ C HC + F+ K L H H+ E P
Sbjct: 49 QKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGESGPS 96
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.9 bits (74), Expect = 0.047
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 39 PPSPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
P + ++C C +L H+ H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.5 bits (65), Expect = 0.082
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHD 70
S EK + CP C F+ K + H+ HD
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 28.3 bits (62), Expect = 0.21
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNP-HYVPPS 41
+ PY C C F++K + HV + PS
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.10
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHDPD 72
KTH C C K F+ KG L H LH D
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 29.2 bits (66), Expect = 0.11
Identities = 10/28 (35%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 44 EKTHKC--PECKKAFRHKGNLLRHMTLH 69
EK C P C F L RH H
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSH 37
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 28.5 bits (64), Expect = 0.17
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 41 SPKEKTHKC--PECKKAFRHKGNLLRHMTLH 69
K+K H C C K + +L H+ H
Sbjct: 3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.8 bits (66), Expect = 0.19
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPS 41
Q + C HC + R +K HV HN PS
Sbjct: 60 QEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS 94
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle,
signaling protein; 2.60A {Escherichia coli} SCOP:
h.4.5.1
Length = 227
Score = 30.7 bits (70), Expect = 0.21
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 137 QSEDGTQQNVAVVQSEDGTQQNVAVV 162
QS Q +AV + + TQQN A+V
Sbjct: 173 QSRGIDQVGLAVAEMDRVTQQNAALV 198
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 27.8 bits (61), Expect = 0.22
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
K + C C++ F G L RH+ +H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
Score = 26.6 bits (58), Expect = 0.56
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLY 32
PY+C HC + F L+RHV ++
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIH 26
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP
domain, TSR receptor, fusion; 2.65A {Archaeoglobus
fulgidus}
Length = 341
Score = 30.5 bits (69), Expect = 0.24
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 137 QSEDGTQQNVAVVQSEDGTQQNVAVVPASS 166
QS Q +AV + + TQQN A+V S+
Sbjct: 253 QSRGIDQVGLAVAEMDRVTQQNAALVEESA 282
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 27.7 bits (62), Expect = 0.27
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
K +CP+C ++F +L H H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.4 bits (56), Expect = 1.9
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHV 29
P+ C CD++F + L H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHR 31
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.34
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
K +KCP+C A K NL H+ H
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKH 32
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.35
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 42 PKEKTHKCPECKKAFRHKGNLLRHMTLH 69
KEK KC +C+K F L +H +H
Sbjct: 8 QKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 24.8 bits (53), Expect = 3.7
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLY 32
+ + C+ C++TF + L +H ++
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.5 bits (61), Expect = 0.41
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 36 HYVPPSPKEKTHKC--PECKKAFRHKGNLLRHMTLHDPD 72
YV P +KT +C P C K F+ + N+ H+ H D
Sbjct: 9 KYVKEMP-DKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.45
Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 27/121 (22%)
Query: 2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPK----EKTHK-C------- 49
++ + Q L D + N+ H + + K ++ C
Sbjct: 198 VLEMLQK--LLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 50 --PECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDDEEE 107
+ AF +L +T +QV L HI H + DE +
Sbjct: 254 QNAKAWNAFNLSCKIL--LTTRF-------KQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 108 E 108
Sbjct: 305 S 305
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.8 bits (66), Expect = 0.46
Identities = 3/29 (10%), Positives = 11/29 (37%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNL 31
+ + + +Q + L+ ++L
Sbjct: 202 LARGEKRLQREKSEQVLDNPEDLRGPIHL 230
Score = 28.6 bits (63), Expect = 1.0
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
+ EK + + ++ + +L + L
Sbjct: 203 ARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 27.1 bits (59), Expect = 0.61
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 6 DQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPS 41
+ C+ CD F ++ LKRH H+ P S
Sbjct: 7 GNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS 42
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 29.2 bits (65), Expect = 0.61
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 92 IIDGHKVEVIPDDEEEEEGEETEEEEEGGGE 122
I H EV+PD + EE E+EE+ E
Sbjct: 222 ISREHPWEVMPDLYFYRDPEEIEKEEQAAAE 252
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 0.86
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLHDPD 72
K KC C+ A R K NL HM H +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 25.6 bits (55), Expect = 1.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVN 30
P+ C C+ R K LK H+N
Sbjct: 9 PFKCSLCEYATRSKSNLKAHMN 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 28.0 bits (62), Expect = 0.89
Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 43 KEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ 78
+ + CP C+ + + L ++ Q
Sbjct: 84 RAQVFSCPACRYDLGRSYAMQVNQPL----QTVLNQ 115
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 28.7 bits (65), Expect = 0.94
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 98 VEVIP--DDEEEEEGEETEEEEEGGGEDDG 125
VE + +E E+ +E +G
Sbjct: 341 VERLDASLEEPEDVVDEAVAITSDAPPAEG 370
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.1
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 4/22 (18%)
Query: 21 QKQLLKR---HVNLYHNPHYVP 39
+KQ LK+ + LY P
Sbjct: 18 EKQALKKLQASLKLY-ADDSAP 38
Score = 26.5 bits (57), Expect = 3.7
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 14/40 (35%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALK 83
EK KK L + L+ DS +A+K
Sbjct: 18 EKQ----ALKK-------LQASLKLYADDS---APALAIK 43
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE]
hydrogenase maturation, zinc-finger, nickel binding,
metal-binding; HET: FME; 2.30A {Pyrococcus
kodakaraensis} PDB: 3a44_A*
Length = 139
Score = 28.1 bits (62), Expect = 1.2
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 12 CDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKA 55
C +C+ ++ K++ + + P CP+C
Sbjct: 73 CRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 27.0 bits (60), Expect = 1.3
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 4/45 (8%)
Query: 12 CDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAF 56
C C + + +Y Y K+ K +
Sbjct: 37 CMVCRKNLDSTTVAIHDAEVYCKSCY----GKKYGPKGYGYGQGA 77
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.7 bits (56), Expect = 1.4
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 44 EKTHKC--PECKKAFRHKGNLLRHMTLHD 70
++ + C P C KAF +L+RH H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 25.4 bits (55), Expect = 1.7
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 9 PYLCDH--CDQTFRQKQLLKRHVNLYHNP 35
PY CDH CD+ F + L RH +
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 27.9 bits (62), Expect = 1.8
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 92 IIDGHKVEVIPDDEEEEEGEETEEEEE 118
+ + EV+ D + E++E
Sbjct: 185 LSKDEEWEVMVDLFYHKTLPTAEQKEA 211
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 26.2 bits (58), Expect = 2.1
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 43 KEKTHKCPECKKAFRHKGNL 62
KCP CK + R K +
Sbjct: 54 SCGFFKCPLCKTSVR-KNAI 72
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 25.6 bits (55), Expect = 2.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLYH 33
+ P C C RQ + L+RH+ L H
Sbjct: 22 EQPATCPICYAVIRQSRNLRRHLELRH 48
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 27.3 bits (61), Expect = 2.2
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 97 KVEVIPDDEEEEEGEETEEEEEGGGEDD 124
+ +E E E E ++G E++
Sbjct: 178 EDVEKLAEEAAAEVAEPEVIKKGKEEEE 205
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 25.1 bits (54), Expect = 2.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
++ C C AF K N RH+ +H
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVH 30
Score = 24.3 bits (52), Expect = 4.1
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLY 32
+ P++C C F K RH+ ++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop,
photosystem II, PSBP, photosynthesis; NMR {Synechocystis
SP}
Length = 170
Score = 27.1 bits (59), Expect = 2.5
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 107 EEEGEETEEEEEGGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDGT 155
+ + E ++DG Y LE + ++ + ++A V + G
Sbjct: 92 SQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGK 140
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 24.5 bits (54), Expect = 3.0
Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 45 KTHKC--PECKKAFRHKGNLLRHMTLH 69
+ C C K F L RH H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 27.2 bits (60), Expect = 3.1
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 74 ELIEQQVALKLGRQKKVHIIDGHKVEVIPDDEEEEEGEETEEEEE 118
LI +A ++ R + + ++PD + EE E++
Sbjct: 171 GLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVA 215
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.7 bits (53), Expect = 3.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHN 34
Y C C+++F +K L RH ++ N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 24.0 bits (51), Expect = 5.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 47 HKCPECKKAFRHKGNLLRHMTLHD 70
+KC C+++F K L RH +H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate
metabolism, cytoplasm, fucose metabolism, manganese,
metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A
3a9t_A*
Length = 595
Score = 27.1 bits (59), Expect = 3.4
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPD 103
E T P + FR G +T + ++ + G + I +G+ V+ +P+
Sbjct: 433 EATQFRPASTEYFRGGGYSTDFLTK--GGMPVTISRLNIVKGLGPVLQIAEGYTVD-LPE 489
Query: 104 DEEEEEGEETEEE 116
+ + + T+
Sbjct: 490 EVHDVLDKRTDPT 502
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 27.0 bits (59), Expect = 3.5
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 11/85 (12%)
Query: 92 IIDGHKVEVIPDDEEEEEGEETEEEEEGGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQS 151
I+ GHK +V+ D + EE +E+EE + A
Sbjct: 193 ILPGHKWDVMVDLFFYRDPEEAKEQEEEEAAL-----------VAPDYGAVAEYAAPAAD 241
Query: 152 EDGTQQNVAVVPASSLMGMGATINE 176
G + + + A +
Sbjct: 242 TWGGEWGTDAAAQPAAIPAQAGADW 266
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module,
phosphoinositide binding, caspase regulation, metal
binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1
g.50.1.1
Length = 120
Score = 26.3 bits (57), Expect = 3.7
Identities = 10/26 (38%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 32 YHNPHYVP-PSPKEKTHKCPECKKAF 56
Y NP Y PSP C C F
Sbjct: 4 YSNPGYSSFPSPTGLEPSCKSCGAHF 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 26.2 bits (58), Expect = 3.8
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 43 KEKTHKCPECKKAFRHK 59
K+ +CP CK +
Sbjct: 55 KKGPSQCPLCKNDITKR 71
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 27.0 bits (60), Expect = 4.1
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 103 DDEEEEEGEETEEEEEGGGEDDGHQYVVLE 132
++ G+ G DD + L
Sbjct: 437 AKVQDSAGDTGMRAAAAGVSDDARGSMSLR 466
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.9 bits (53), Expect = 4.2
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHDPDS 73
K ++C +C+ F + +L++H H S
Sbjct: 10 RKRYECSKCQATFNLRKHLIQHQKTHAAKS 39
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 26.8 bits (58), Expect = 4.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 99 EVIPDDEEEEEGEETEEEEEGGGEDD 124
E D+EE +E E+ EE+++ G EDD
Sbjct: 368 EFEEDEEEADEDEDEEEDDDHGLEDD 393
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 26.5 bits (58), Expect = 4.3
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 43 KEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ 78
K + CP C+ ++ + L L++
Sbjct: 110 KAQVFSCPACRHDLGQNYIMIPNEIL----QTLLDL 141
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.1 bits (52), Expect = 4.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 49 CPECKKAFRHKGNLLRHMTLH 69
CPEC K F +L H+ LH
Sbjct: 5 CPECPKRFMRSDHLTLHILLH 25
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 25.6 bits (56), Expect = 4.6
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 12 CDHCDQTFRQKQLLKRHVNLYHNPHY 37
C +C+ H +Y PH+
Sbjct: 45 CSYCNNKLSLGTYASLHGRIYCKPHF 70
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 26.7 bits (58), Expect = 4.8
Identities = 3/24 (12%), Positives = 12/24 (50%)
Query: 102 PDDEEEEEGEETEEEEEGGGEDDG 125
+D+ + + E +++ ++D
Sbjct: 317 SEDDADADDAAEEADDDDDDDEDA 340
Score = 26.7 bits (58), Expect = 4.9
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 99 EVIPDDEEEEEGEETEEEEEGGGEDDG 125
DD + ++ E ++++ ED G
Sbjct: 315 TASEDDADADDAAEEADDDDDDDEDAG 341
Score = 26.0 bits (56), Expect = 8.5
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 70 DPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDDEEEEEGEETEEEEEGGGE 122
EL + + D + D+ EE ++ ++++E G+
Sbjct: 290 ALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAGD 342
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 25.3 bits (56), Expect = 4.9
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 39 PPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE 77
+ CP C ++ +L + L + ++E
Sbjct: 46 AVTSMGGKSSCPVCGISYS-FEHLQANQHL----ANIVE 79
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 24.4 bits (52), Expect = 5.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYH 33
Y C C+++F + +L+K H+ H
Sbjct: 10 YSCPVCEKSFSEDRLIKSHIKTNH 33
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 25.1 bits (55), Expect = 5.3
Identities = 6/41 (14%), Positives = 7/41 (17%), Gaps = 5/41 (12%)
Query: 12 CDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC 52
C C R + Y Y P
Sbjct: 36 CSTCRAQLRGQHFYAVERRAYCEGCY-----VATLESGPSS 71
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 25.5 bits (56), Expect = 5.4
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 43 KEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ 78
+ H CP C + L+ + L + +
Sbjct: 47 ESDEHTCPTCHQNDVSPDALIANKFL----RQAVNN 78
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase,
arginine biosynthesis, phosphoryl group transfer,
protein crystallography; HET: NLG ANP; 1.5A {Escherichia
coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A*
1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Length = 258
Score = 26.3 bits (59), Expect = 5.5
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 16/51 (31%)
Query: 59 KGNLLRHMTLHDPDSELIEQQV--------------ALKLGRQKKVHIIDG 95
KG + MT + +LIEQ + A + + V I
Sbjct: 189 KGQRIAEMTAAKAE-QLIEQGIITDGMIVKVNAALDAARTL-GRPVDIASW 237
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.1 bits (52), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 49 CPECKKAFRHKGNLLRHMTLH 69
CPEC K F +L +H+TLH
Sbjct: 5 CPECPKRFMRSDHLSKHITLH 25
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding
protein, hnRNP, telomere, DNA-binding protein, RNA
binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB:
1wtb_A 1x0f_A
Length = 75
Score = 24.8 bits (55), Expect = 6.1
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 87 QKKVHIIDGHKVEV 100
+KK H + K E+
Sbjct: 59 EKKYHNVGLSKCEI 72
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 23.9 bits (51), Expect = 6.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 9 PYLCDHCDQTFRQKQLLKRHV 29
PY+C+ C + F Q L H+
Sbjct: 2 PYVCERCGKRFVQSSQLANHI 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 24.9 bits (55), Expect = 6.5
Identities = 4/21 (19%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 42 PKEKTHKCPECKKAFRHKGNL 62
+ CP C+ +++ N+
Sbjct: 55 LDKGESSCPVCRISYQ-PENI 74
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 24.7 bits (54), Expect = 6.8
Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 5/41 (12%)
Query: 12 CDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC 52
CD C + +K P + + P
Sbjct: 34 CDLCQEVLADIGFVKNAGRHLCRPCH-----NREKASGPSS 69
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 25.8 bits (57), Expect = 7.6
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 100 VIPDDEEEEEGEETEEEEEGGGEDD 124
+ ++ E E GE
Sbjct: 176 LTAEELEAEVQAAQVAGLVAAGELS 200
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog,
putative C-like transposable element, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Length = 73
Score = 24.8 bits (53), Expect = 8.0
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 42 PKEKTHKCPECKKAFRHKG---NLLRHMTLHDPD--SELIEQQVALKLG 85
+ K C C + G NL H+ + P+ E ++ G
Sbjct: 25 LQWKKIYCRICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKSNSGPSSG 73
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.7 bits (50), Expect = 8.7
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHN 34
+ C++C++ F+ K L+ H+ ++ N
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTN 34
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 25.6 bits (55), Expect = 8.8
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 11/69 (15%)
Query: 11 LCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHD 70
+C+ C K +N K + P C++ ++ + T
Sbjct: 77 ICNICHI---LKNTDGFEIN--------QTDAKGRKTTRPSCRECRKNIDGVKLSSTEKK 125
Query: 71 PDSELIEQQ 79
E+ +
Sbjct: 126 KMDEIAPPK 134
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 24.5 bits (53), Expect = 8.8
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 44 EKTHKCPECKKAFRHK 59
+ + CP C+K HK
Sbjct: 54 KNANTCPTCRKKINHK 69
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure,
mitochondrial oxidative phosphorylati protein binding;
2.10A {Saccharomyces cerevisiae}
Length = 227
Score = 25.8 bits (56), Expect = 9.0
Identities = 8/53 (15%), Positives = 14/53 (26%)
Query: 90 VHIIDGHKVEVIPDDEEEEEGEETEEEEEGGGEDDGHQYVVLEVIQVQSEDGT 142
+ + +E E E E+ + V VI +S
Sbjct: 74 FDVAQIANLPYNNAMDENTEQNEDGINEDDFDALSDNFANVNVVISKESASEP 126
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
PDB: 3gu0_A
Length = 433
Score = 25.7 bits (57), Expect = 9.1
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 86 RQKKV--HIIDGHKVEVIPDDEEEEEGEETEEEEEGGGED 123
++KV ++ KV+V+ E ++ E E+ E
Sbjct: 393 LKRKVLDLLLQEVKVKVVEPKGEGDDSEGKEDNLEHHHHH 432
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.132 0.387
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,861,777
Number of extensions: 174121
Number of successful extensions: 1284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1139
Number of HSP's successfully gapped: 448
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.0 bits)