RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9958
(181 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 51.2 bits (122), Expect = 3e-10
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL 68
Y C C ++F K RH++++ + C C K F+ K +L+ HM +
Sbjct: 3 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRP---------YGCGVCGKKFKMKHHLVGHMKI 52
Query: 69 H 69
H
Sbjct: 53 H 53
Score = 28.1 bits (62), Expect = 0.12
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRH 28
M +H+ PY C C + F+ K L H
Sbjct: 22 MSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 41.4 bits (98), Expect = 9e-07
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+K +C C + F +L H+ H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 29.5 bits (67), Expect = 0.017
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 9 PYLCDHCDQTFRQKQLLKRH 28
P+ C C + F + L H
Sbjct: 3 PFQCRICMRNFSRSDHLTTH 22
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 40.3 bits (95), Expect = 2e-06
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C EC KAF L++H +H
Sbjct: 5 EKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 33.7 bits (78), Expect = 5e-04
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
IH + PY C C + F + +L +H
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQH 26
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 40.4 bits (95), Expect = 3e-06
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK + C C K FR K L H +
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 38.9 bits (91), Expect = 1e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHY 37
H + PY C HCD+TFRQKQLL H YH+P++
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 36
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 39.1 bits (92), Expect = 7e-06
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
++ C C +AF + +L RH H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 30.3 bits (69), Expect = 0.010
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 9 PYLCDHCDQTFRQKQLLKRH 28
++C+ C + F +++ LKRH
Sbjct: 2 SFVCEVCTRAFARQEHLKRH 21
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 38.4 bits (90), Expect = 2e-05
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHM 66
K + C C K F +L H+
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHI 25
Score = 35.0 bits (81), Expect = 2e-04
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC 49
PY+C C + F + L H+ H E+ HKC
Sbjct: 5 PYICQSCGKGFSRPDHLNGHIKQVHT--------SERPHKC 37
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 37.3 bits (87), Expect = 3e-05
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
K CPEC K F +L +H+ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
Score = 29.2 bits (66), Expect = 0.022
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 9 PYLCDHCDQTFRQKQLLKRH 28
+ C C + F + L +H
Sbjct: 2 KFACPECPKRFMRSDHLSKH 21
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 36.8 bits (86), Expect = 4e-05
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
K +KC EC KAF L+ H +H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
Score = 28.3 bits (64), Expect = 0.058
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 9 PYLCDHCDQTFRQKQLLKRH 28
PY C C + F Q L H
Sbjct: 2 PYKCLECGKAFSQNSGLINH 21
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.9 bits (86), Expect = 4e-05
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
EK ++C C F G + H+
Sbjct: 6 EKPYECYICHARFTQSGTMKMHILQK 31
Score = 35.3 bits (82), Expect = 2e-04
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYH 33
H + PY C C F Q +K H+ H
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKH 32
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 36.7 bits (85), Expect = 6e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
++ C C AF K N RH+ +H
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVH 30
Score = 30.1 bits (68), Expect = 0.012
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 4 HIDQNPYLCDHCDQTFRQKQLLKRH 28
+ P++C C F K RH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH 26
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 35.9 bits (83), Expect = 1e-04
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
K +CP+C ++F +L H H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.1 bits (68), Expect = 0.013
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 IHIDQNPYLCDHCDQTFRQKQLLKRH 28
P+ C CD++F + L H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALH 30
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 34.2 bits (79), Expect = 4e-04
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 44 EKTHKCPE--CKKAFRHKGNLLRHMTLH 69
++ + C C KAF +L+RH H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 25.4 bits (56), Expect = 0.57
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 9 PYLCDH--CDQTFRQKQLLKRH 28
PY CDH CD+ F + L RH
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRH 24
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 34.2 bits (79), Expect = 5e-04
Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 45 KTHKC--PECKKAFRHKGNLLRHMTLH 69
+ C C K F L RH H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 26.5 bits (59), Expect = 0.22
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 9 PYLCDH--CDQTFRQKQLLKRH 28
P++C C + F + L+RH
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRH 23
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 33.5 bits (77), Expect = 9e-04
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 45 KTHKCPE--CKKAFRHKGNLLRHMTLH 69
K HKC C+K++ NL H+ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 25.8 bits (57), Expect = 0.41
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 9 PYLCDH--CDQTFRQKQLLKRH 28
P+ C C +++ + + LK H
Sbjct: 2 PHKCTFEGCRKSYSRLENLKTH 23
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 33.1 bits (76), Expect = 0.001
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 45 KTHKCPE--CKKAFRHKGNLLRHMTLH 69
+ + CP C + F +L RH+ +H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 25.4 bits (56), Expect = 0.54
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 9 PYLCDH--CDQTFRQKQLLKRH 28
PY C CD+ F + L RH
Sbjct: 2 PYACPVESCDRRFSRSADLTRH 23
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.8 bits (75), Expect = 0.001
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 46 THKCPE--CKKAFRHKGNLLRHMTLH 69
+ CPE C K+F K +L HM LH
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLH 26
Score = 22.8 bits (49), Expect = 5.2
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 11/42 (26%)
Query: 10 YLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC 49
+ C C ++F K+ LK H+ L+ + + + C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSD---------TRDYIC 34
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 32.8 bits (75), Expect = 0.002
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
+ +KC EC K+F H +L +H H
Sbjct: 10 RRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 29.7 bits (67), Expect = 0.019
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRH 28
++ Y CD C ++F L +H
Sbjct: 4 EWQQRERRRYKCDECGKSFSHSSDLSKH 31
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 31.6 bits (72), Expect = 0.004
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 45 KTHKCPE--CKKAFRHKGNLLRHMTLH 69
K +C C K F NL H+ +H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 25.0 bits (55), Expect = 0.93
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 9 PYLCDH--CDQTFRQKQLLKRH 28
P+ C C + F L+ H
Sbjct: 2 PFQCTFEGCGKRFSLDFNLRTH 23
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 29.2 bits (66), Expect = 0.021
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 45 KTHKCPE--CKKAFRHKGNLLRHMTLH 69
+ + CP C K F NL H+ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 25.4 bits (56), Expect = 0.54
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 9 PYLCDH--CDQTFRQKQLLKRHV 29
PY+C C++ F Q LK H+
Sbjct: 2 PYVCPFDGCNKKFAQSTNLKSHI 24
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 28.5 bits (63), Expect = 0.049
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 13 DHCDQTFRQKQLLKRHVNLYHN 34
D CD F K +K+H N +HN
Sbjct: 8 DGCDLRFTTKANMKKHFNRFHN 29
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 28.1 bits (62), Expect = 0.058
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 47 HKCPECKKAFRHKGNLLRHMTLH 69
HKC C K F K L HM H
Sbjct: 2 HKCEVCGKCFSRKDKLKTHMRCH 24
Score = 23.9 bits (51), Expect = 2.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 9 PYLCDHCDQTFRQKQLLKRHV 29
P+ C+ C + F +K LK H+
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHM 21
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 28.2 bits (63), Expect = 0.060
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHN 34
PY C C++ F ++ LL RH H+
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIHS 26
Score = 23.2 bits (50), Expect = 3.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 49 CPECKKAFRHKGNLLRH 65
C C +AF + L+RH
Sbjct: 4 CGLCNRAFTRRDLLIRH 20
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 27.8 bits (62), Expect = 0.10
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
+++ C CK+ FR L HM +H
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVH 28
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 26.9 bits (59), Expect = 0.20
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 49 CPECKKAFRHKGNLLRHM 66
C C +F+ KGNL +HM
Sbjct: 4 CTYCNFSFKTKGNLTKHM 21
Score = 25.3 bits (55), Expect = 0.62
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 9 PYLCDHCDQTFRQKQLLKRHV 29
PY C +C+ +F+ K L +H+
Sbjct: 1 PYHCTYCNFSFKTKGNLTKHM 21
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.7 bits (56), Expect = 0.46
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
+ H C EC KAF L RH +H
Sbjct: 1 RVHVCAECGKAFVESSKLKRHQLVH 25
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase
CodA {Agrobacterium tumefaciens [TaxId: 358]}
Length = 130
Score = 27.5 bits (60), Expect = 0.63
Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 6/101 (5%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
+I N + + +++ C C A
Sbjct: 34 RVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVTLEPCTMCAAAISFAR 93
Query: 61 NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVI 101
+ DP +E ++ Q H H +V
Sbjct: 94 IRRLYYGAQDPKGGAVES--GVRFFSQPTCH----HAPDVY 128
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 25.7 bits (56), Expect = 0.74
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 44 EKTHKCPECK--KAFRHKGNLLRHMTLH 69
+KT +C K F+ + N+ H+ H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
[TaxId: 7227]}
Length = 54
Score = 25.9 bits (56), Expect = 0.75
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLYH 33
+ P C C RQ + L+RH+ L H
Sbjct: 22 EQPATCPICYAVIRQSRNLRRHLELRH 48
Score = 23.9 bits (51), Expect = 3.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 41 SPKEKTHKCPECKKAFRHKGNLLRHMTL 68
S E+ CP C R NL RH+ L
Sbjct: 19 SQSEQPATCPICYAVIRQSRNLRRHLEL 46
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 27.5 bits (61), Expect = 0.85
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHK 48
+LC++C + + ++ + H+ + P KE K
Sbjct: 32 WLCEYCLKYMKYEKSYRFHL---GQCQWRQPPGKEIYRK 67
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 24.8 bits (53), Expect = 0.87
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYH 33
PY C C Q F QK+ L+ H+ H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMIKLH 26
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 27.2 bits (59), Expect = 1.1
Identities = 9/134 (6%), Positives = 30/134 (22%), Gaps = 17/134 (12%)
Query: 1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
M + + + + ++ +
Sbjct: 188 MNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPH 247
Query: 61 NLLRHMTLHDPDSELI--EQQVALKL--------GRQKK-VHIIDGHK------VEVIPD 103
+ + D D+ + E+ + R ++D + V +
Sbjct: 248 RISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVISVWKVEA 307
Query: 104 DEEEEEGEETEEEE 117
+++ E+ E
Sbjct: 308 EDKTEKLAAALEHH 321
>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 37
Score = 24.6 bits (53), Expect = 1.4
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 44 EKTHKCPECKKAFRHKGNLLRH-MTLHDPD 72
E T++C C + + H N RH +T H +
Sbjct: 6 EHTYRCKVCSRVYTHISNFCRHYVTSHKRN 35
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 24.6 bits (53), Expect = 1.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLHD 70
EK + CP C F+ K + H+ HD
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHD 27
Score = 22.3 bits (47), Expect = 8.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHV 29
+ PY C C F++K + HV
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHV 23
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 24.6 bits (53), Expect = 1.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
K C C K FR +L RH H
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSH 28
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 25.2 bits (55), Expect = 1.6
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
+ + C C+ F ++ H +LH
Sbjct: 24 ELKDQHVYVCAVCQNVFCVDCDVFVHDSLH 53
>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz
{Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 24.3 bits (53), Expect = 1.6
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 10 YLCDHCDQTFRQKQLLKRH 28
YLC+ C + + + +L++H
Sbjct: 8 YLCEFCLKYMKSRTILQQH 26
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At2g36320 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 64
Score = 24.8 bits (54), Expect = 1.8
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 40 PSPKEKTHKCPECKK 54
PSP ++ ++C C+K
Sbjct: 9 PSPPQRPNRCTVCRK 23
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 23.9 bits (51), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHN 34
Y C C+++F +K L RH ++ N
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVHKN 25
Score = 23.5 bits (50), Expect = 3.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 47 HKCPECKKAFRHKGNLLRHMTLH 69
+KC C+++F K L RH +H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 23.9 bits (51), Expect = 2.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 48 KCPECKKAFRHKGNLLRH 65
+CP+C K + K NLL H
Sbjct: 3 ECPKCGKCYFRKENLLEH 20
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 26.3 bits (58), Expect = 2.2
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 10 YLCDHCDQTFRQKQLLKRHV---NLYHNP 35
YLC+ C + + + +L++H+ +H P
Sbjct: 32 YLCEFCLKYMKSRTILQQHMKKCGWFHPP 60
Score = 24.4 bits (53), Expect = 8.0
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 32 YHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL----HDPDSELIEQ 78
Y +P+ S K + C C K + + L +HM H P +E+ +
Sbjct: 17 YSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWFHPPANEIYRK 67
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 25.2 bits (54), Expect = 2.2
Identities = 5/50 (10%), Positives = 11/50 (22%), Gaps = 9/50 (18%)
Query: 11 LCDHCDQTFRQKQLLKRHVNLYHNP-HYVPPSPKEKTHKCPECKKAFRHK 59
C C + H + + + C C + +
Sbjct: 35 ECQECHNLY--------HQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.6 bits (51), Expect = 2.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 7 QNPYLCDHCDQTFRQKQLLKRHVNLY 32
+ P+ CD C + F + KRH ++
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.6 bits (50), Expect = 3.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYHN 34
PY C CD L +H+ ++ +
Sbjct: 3 PYKCKTCDYAAADSSSLNKHLRIHSD 28
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.4 bits (50), Expect = 3.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 9 PYLCDHCDQTFRQKQLLKRHVNLYH 33
P+ C++C +Q L +H+ +H
Sbjct: 2 PFKCNYCSFDTKQPSNLSKHMKKFH 26
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.5 bits (56), Expect = 3.4
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC 52
Y+ D Q F K+ +R+ H P E
Sbjct: 35 YIDDFTLQYFGSKKQYERYRKKCTLRH---PPGNEIYRDDYVS 74
Score = 24.4 bits (53), Expect = 9.0
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 5/35 (14%)
Query: 37 YVPPSPKEKTHK-----CPECKKAFRHKGNLLRHM 66
Y P P E T + + F K R+
Sbjct: 20 YFSPYPIELTDEDFIYIDDFTLQYFGSKKQYERYR 54
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 24.9 bits (54), Expect = 5.2
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 102 PDDEEEEEGEETEEEEEGGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDGTQQNVAV 161
P + EEE + ++ EE E V+EVI+ ++ Q++ A
Sbjct: 68 PTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAE 127
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.4 bits (55), Expect = 5.2
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 87 QKKVHIIDGHKVEVIPDDEEEEEGEETEEEEE 118
+++ II G + P E+ +G+E E
Sbjct: 64 EQRSRIISG---QEQPKPEQIAKGQEIVESLN 92
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 22.7 bits (48), Expect = 5.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 47 HKCPECKKAFRHKGNLLRHMTL 68
+ CP C K F K N+ H+ +
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKI 23
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At1g12440 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 74
Score = 23.3 bits (50), Expect = 8.1
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 34 NPHYVPPSPKEKTHKCPECKK 54
+ PK +C C K
Sbjct: 13 SAAAPLDPPKSTATRCLSCNK 33
>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f
complex, soluble domain {Mastigocladus laminosus
[TaxId: 83541]}
Length = 134
Score = 23.9 bits (51), Expect = 8.8
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 30 NLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLR 64
H VP + E KCP + G ++R
Sbjct: 62 VCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIR 96
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 23.5 bits (51), Expect = 9.0
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 96 HKVEVIPDDEEEEEGEETEEEEEGGGEDDGHQYVV 130
+ EVI ++ + E +E G +G Y+V
Sbjct: 39 IRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIV 73
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 24.3 bits (52), Expect = 9.1
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 64 RHMTLHDPDSELIEQQV 80
+H+ DP+ +L ++Q+
Sbjct: 9 KHVFKLDPNKDLPDEQL 25
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 22.0 bits (46), Expect = 9.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
E+ C C++ FR + L HM H
Sbjct: 2 EQVFTCSVCQETFRRRMELRLHMVSH 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.132 0.387
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 703,759
Number of extensions: 33682
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 106
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.8 bits)