BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9959
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 79/152 (51%), Gaps = 16/152 (10%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
E+P+ C C + F L H THTG KP+KC C F+ +L RH R HT EKP
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKP 77
Query: 242 HKCSICDYASVELSKMRNHMRSHTGERPY---------------QLHCKSHEGEKCWKCE 286
+KC C + + + +R H R+HTGE+PY + H ++H GEK +KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 287 LCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
C + S + +L +H HT +KPY C C +
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 136 EDVDEKPKLSKLNKKQVVAPAHMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFK 195
+ +K L++ + + C C + +R L H ++H+ E+P+ C C + F
Sbjct: 57 KSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFS 116
Query: 196 TIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELS 255
+A L+ H THTG KP+KC C F+ L H R HT EKP+KC C +
Sbjct: 117 QLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRD 175
Query: 256 KMRNHMRSHTGER 268
+ H R+HTG++
Sbjct: 176 ALNVHQRTHTGKK 188
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 209 GVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
G KP+ C C F+ S L H R HT EKP+KC C + + + H R+HTGE+
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 269 PY---------------QLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
PY + H ++H GEK + C C + S HL +H HT +KPY C
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 314 DHCDQ 318
C +
Sbjct: 137 PECGK 141
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHT 237
S PHKC VC + F L+ H+ HTGVKP+KCK C+ S L +H+R H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HS 60
Query: 238 HEKPHKCSICDYASVELSKMRNHMRSHTGE 267
E+P KC IC YAS S++ H+RSHTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 15/100 (15%)
Query: 212 PHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
PHKC+ C F+ +L H+R HT KP+KC CDYA+ + S + H+R H+ ERP+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF- 65
Query: 272 LHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHT-DQKP 310
KC++CPYAS + L H+ HT D P
Sbjct: 66 ------------KCQICPYASRNSSQLTVHLRSHTGDSGP 93
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 241 PHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLES 300
PHKC +C K++ HMR HTG +PY KC+ C YA++ L
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPY-------------KCKTCDYAAADSSSLNK 54
Query: 301 HMLIHTDQKPYLCDHC 316
H+ IH+D++P+ C C
Sbjct: 55 HLRIHSDERPFKCQIC 70
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG 209
C C+Y + L +HL+ HS+ERP KC +C + + L H+ +HTG
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 284 KCELCPYASSSQRHLESHMLIHTDQKPYLCDHCD 317
KCE+C S + L++HM HT KPY C CD
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCD 43
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 180 SEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYK 235
SE+RP C+ C + + ++ LQ H HTG KP++C + CE RF+ S +L RH R +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-R 60
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
HT KP +C C ++ H R+HTGE+P+
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 158 MCNY--CNYTSPKRYLLARHLKSHSE----ERPHKCSV--CERGFKTIASLQNHINTHTG 209
MC Y CN KRY HL+ HS E+P++C CER F L+ H HTG
Sbjct: 8 MCAYPGCN----KRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 210 VKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKC 244
VKP +CK C+ +F+ S L H R HT EKP C
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSC 97
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELV 229
L RH + H+ +P +C C+R F L+ H THTG KP C++ C+ +F S ELV
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
Query: 230 RH 231
RH
Sbjct: 114 RH 115
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 211 KPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTG 266
+P C Y C R+ L H R KHT EKP++C C+ +++ H R HTG
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 267 ERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+P+Q C+ C S HL++H HT +KP+ C
Sbjct: 64 VKPFQ-------------CKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
++P C+ C+ +LS ++ H R HTGE+PYQ K E ++ S Q
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERR---------FSRSDQ- 53
Query: 297 HLESHMLIHTDQKPYLCDHCDQ 318
L+ H HT KP+ C C +
Sbjct: 54 -LKRHQRRHTGVKPFQCKTCQR 74
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 187 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSI 246
C +C + FK ++L H+ H+ +P+ C+YC RF ++ +H + HT EKPHKC +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQV 62
Query: 247 CDYASVELSKMRNHMRSHTG 266
C A + S + H R HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYC 218
C C + + L+ HL HS+ RP+ C C + F + ++ H HTG KPHKC+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 219 ESRFTTSGELVRHVRYKHT 237
F+ S L+ H R KHT
Sbjct: 64 GKAFSQSSNLITHSR-KHT 81
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG 209
C YC ++ + +H H+ E+PHKC VC + F ++L H HTG
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 283 WKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
+ C++C + L +H+LIH+D +PY C +C +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGK 37
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 244 CSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHML 303
C IC + S + H+ H+ RPY C+ C + ++ H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYP-------------CQYCGKRFHQKSDMKKHTF 50
Query: 304 IHTDQKPYLCDHCDQ 318
IHT +KP+ C C +
Sbjct: 51 IHTGEKPHKCQVCGK 65
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
E+P+KC C + F ++LQ H THTG KP+KC C F+ S +L +H R HT EKP
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKP 60
Query: 242 HKCSICDYASVELSKMRNHMRSHTGER 268
+KC C + + H R+H ++
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYC 218
C C + + L +H ++H+ E+P+KC C + F + LQ H THTG KP+KC C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 219 ESRFTTSGELVRHVR 233
F+ S L RH R
Sbjct: 67 GKSFSRSDHLSRHQR 81
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
KP+KC C F+ S L +H R HT EKP+KC C + + S ++ H R+HTGE+PY
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 271 QLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQK 309
KC C + S HL H H ++K
Sbjct: 62 -------------KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHL 298
EKP+KC C + + S ++ H R+HTGE+PY KC C + S L
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPY-------------KCPECGKSFSQSSDL 48
Query: 299 ESHMLIHTDQKPYLCDHCDQ 318
+ H HT +KPY C C +
Sbjct: 49 QKHQRTHTGEKPYKCPECGK 68
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 144 LSKLNKKQVVAPAHMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNH 203
L K + + C C + + L +H ++H+ E+P+KC C + F L H
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79
Query: 204 INTHTGVK 211
TH K
Sbjct: 80 QRTHQNKK 87
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Query: 170 YLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTS 225
Y+L H++ H+ E+PHKC+ C + + + +L+ H+ +HTG KP+ C++ C F+ +
Sbjct: 53 YMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA 112
Query: 226 GELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRS 263
+ +H H++EKP+ C + C + S +R H+++
Sbjct: 113 SDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 39/128 (30%)
Query: 187 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSI 246
CS R FK L H+ HTG KPHKC +
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTF---------------------------EG 74
Query: 247 CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHM-LIH 305
C + L ++ H+RSHTGE+PY HEG C A S+ H H
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMC---EHEG--------CSKAFSNASDRAKHQNRTH 123
Query: 306 TDQKPYLC 313
+++KPY+C
Sbjct: 124 SNEKPYVC 131
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 215 CKY--CESRFTTSGELVRHVRYKHTHEKPHKCSICDYA--SVELSKMRN------HMRSH 264
C++ C F + +LV H+ +H H + K +C + S EL + HMR H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGE-RKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 265 TGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
TGE+P++ + EG C + S +L++H+ HT +KPY+C+H
Sbjct: 63 TGEKPHKC---TFEG--------CRKSYSRLENLKTHLRSHTGEKPYMCEH 102
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 182 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 239
ERP+ C V C+R F SL HI HTG KP +C+ C F+ S L H+R HT E
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 240 KPHKCSICDYASVELSKMRNHMRSH 264
KP C IC + + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 232 VR 233
+
Sbjct: 82 TK 83
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 211 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+P+ C + C+ RF+ SG L RH+R HT +KP +C IC + H+R+HTGE+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 269 PYQLHCKSHEGEKCWKCELC--PYASSSQRHLESHMLIHTDQK 309
P+ C++C +A S +R + H IH QK
Sbjct: 62 PFA-------------CDICGRKFARSDER--KRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
E+P+ C + CD + + H+R HTG++P+Q C +C S
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ-------------CRICMRNFSRSD 48
Query: 297 HLESHMLIHTDQKPYLCDHCDQ 318
HL +H+ HT +KP+ CD C +
Sbjct: 49 HLTTHIRTHTGEKPFACDICGR 70
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C C + L H+++H+ E+P C +C R F + H H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 182 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 239
ERP+ C V C+R F A L HI HTG KP +C+ C F+ S L H+R HT E
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 240 KPHKCSICDYASVELSKMRNHMRSH 264
KP C IC + + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 232 VR 233
+
Sbjct: 82 TK 83
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 211 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+P+ C + C+ RF+ S +L RH+R HT +KP +C IC + H+R+HTGE+
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 269 PYQLHCKSHEGEKCWKCELC--PYASSSQRHLESHMLIHTDQK 309
P+ C++C +A S +R + H IH QK
Sbjct: 62 PFA-------------CDICGRKFARSDER--KRHTKIHLRQK 89
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
E+P+ C + CD + + H+R HTG++P+Q C +C S
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQ-------------CRICMRNFSRSD 48
Query: 297 HLESHMLIHTDQKPYLCDHCDQ 318
HL +H+ HT +KP+ CD C +
Sbjct: 49 HLTTHIRTHTGEKPFACDICGR 70
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C C + L H+++H+ E+P C +C R F + H H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 182 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 239
ERP+ C V C+R F A L HI HTG KP +C+ C F+ S L H+R HT E
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 240 KPHKCSICDYASVELSKMRNHMRSH 264
KP C IC + + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 232 VR 233
+
Sbjct: 82 TK 83
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 211 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+P+ C + C+ RF+ S EL RH+R HT +KP +C IC + H+R+HTGE+
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 269 PYQLHCKSHEGEKCWKCELC--PYASSSQRHLESHMLIHTDQK 309
P+ C++C +A S +R + H IH QK
Sbjct: 62 PFA-------------CDICGRKFARSDER--KRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
E+P+ C + CD +++ H+R HTG++P+Q C +C S
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQ-------------CRICMRNFSRSD 48
Query: 297 HLESHMLIHTDQKPYLCDHCDQ 318
HL +H+ HT +KP+ CD C +
Sbjct: 49 HLTTHIRTHTGEKPFACDICGR 70
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C C + L H+++H+ E+P C +C R F + H H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 182 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 239
ERP+ C V C+R F ++L HI HTG KP +C+ C F+ S L H+R HT E
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 240 KPHKCSICDYASVELSKMRNHMRSH 264
KP C IC + + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 232 VR 233
+
Sbjct: 82 TK 83
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 20/103 (19%)
Query: 211 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+P+ C + C+ RF+ S L RH+R HT +KP +C IC + H+R+HTGE+
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 269 PYQLHCKSHEGEKCWKCELC--PYASSSQRHLESHMLIHTDQK 309
P+ C++C +A S +R + H IH QK
Sbjct: 62 PFA-------------CDICGRKFARSDER--KRHTKIHLRQK 89
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
E+P+ C + CD + S + H+R HTG++P+Q C +C S
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQ-------------CRICMRNFSRSD 48
Query: 297 HLESHMLIHTDQKPYLCDHCDQ 318
HL +H+ HT +KP+ CD C +
Sbjct: 49 HLTTHIRTHTGEKPFACDICGR 70
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C C + L H+++H+ E+P C +C R F + H H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 182 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 239
ERP+ C V C+R F L HI HTG KP +C+ C F+ S L H+R HT E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 240 KPHKCSICDYASVELSKMRNHMRSH 264
KP C IC + + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 232 VR 233
+
Sbjct: 82 TK 83
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 211 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+P+ C + C+ RF+ S EL RH+R HT +KP +C IC + H+R+HTGE+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 269 PYQLHCKSHEGEKCWKCELC--PYASSSQRHLESHMLIHTDQK 309
P+ C++C +A S +R + H IH QK
Sbjct: 62 PFA-------------CDICGRKFARSDER--KRHTKIHLRQK 89
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
E+P+ C + CD ++ H+R HTG++P+Q C +C S
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ-------------CRICMRNFSRSD 48
Query: 297 HLESHMLIHTDQKPYLCDHCDQ 318
HL +H+ HT +KP+ CD C +
Sbjct: 49 HLTTHIRTHTGEKPFACDICGR 70
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C C + L H+++H+ E+P C +C R F + H H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 182 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 239
ERP+ C V C+R F L HI HTG KP +C+ C F+ S L H+R HT E
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 59
Query: 240 KPHKCSICDYASVELSKMRNHMRSH 264
KP C IC + + H + H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Query: 232 VR 233
+
Sbjct: 81 TK 82
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 20/102 (19%)
Query: 211 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+P+ C + C+ RF+ S EL RH+R HT +KP +C IC + H+R+HTGE+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 269 PYQLHCKSHEGEKCWKCELC--PYASSSQRHLESHMLIHTDQ 308
P+ C++C +A S +R + H IH Q
Sbjct: 61 PFA-------------CDICGRKFARSDER--KRHTKIHLRQ 87
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
E+P+ C + CD ++ H+R HTG++P+Q C +C S
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ-------------CRICMRNFSRSD 47
Query: 297 HLESHMLIHTDQKPYLCDHCDQ 318
HL +H+ HT +KP+ CD C +
Sbjct: 48 HLTTHIRTHTGEKPFACDICGR 69
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C C + L H+++H+ E+P C +C R F + H H
Sbjct: 36 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 181 EERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKH 236
+ R H C C + + + L+ H+ THTG KP+KC + C+ RF S EL RH R KH
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KH 70
Query: 237 THEKPHKCSICDYASVELSKMRNHMRSH 264
T KP +C +C+ + + HM+ H
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 147 LNKKQVVAPAHMCNY--CNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQN 202
L K+++ H C+Y C K L HL++H+ E+P+KC+ C+ F L
Sbjct: 10 LEKRRI----HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTR 65
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVR 233
H HTG KP +C C F+ S L H++
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 18/78 (23%)
Query: 247 CDYAS-----VELSKMRNHMRSHTGERPYQLHCKSHEGEKC-WKCELCPYASSSQRHLES 300
CDY + S ++ H+R+HTGE+PY KC W E C + + L
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPY----------KCTW--EGCDWRFARSDELTR 65
Query: 301 HMLIHTDQKPYLCDHCDQ 318
H HT KP+ C C++
Sbjct: 66 HYRKHTGAKPFQCGVCNR 83
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 16/109 (14%)
Query: 101 GEEAPSSEEEDLTVYDFEEVDEVDPIGEEAPSTIEEDVDEKPKLSKLNKKQVVAPAHMCN 160
G P E+ + D+ +V + + EKP + C
Sbjct: 4 GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP--------------YKCT 49
Query: 161 Y--CNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
+ C++ + L RH + H+ +P +C VC R F L H+ H
Sbjct: 50 WEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 182 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 239
ERP+ C V C+R F L HI HTG KP +C+ C F+ S L H+R HT E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 240 KPHKCSICDYASVELSKMRNHMRSH 264
KP C IC + + H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 232 VR 233
+
Sbjct: 82 TK 83
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 238 HEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQ 295
HE+P+ C + CD ++ H+R HTG++P+Q C +C S
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ-------------CRICMRNFSRS 47
Query: 296 RHLESHMLIHTDQKPYLCDHCDQ 318
HL +H+ HT +KP+ CD C +
Sbjct: 48 DHLTTHIRTHTGEKPFACDICGR 70
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 211 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+P+ C + C+ RF+ S EL RH+R HT +KP +C IC + H+R+HTGE+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 269 PY 270
P+
Sbjct: 62 PF 63
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C C + L H+++H+ E+P C +C R F + H H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 54.7 bits (130), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 162 CNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESR 221
C+ ++ L H++ H+ ++P +C +C R F ASL HI THTG KP C C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 222 FTTSGELVRHVR 233
F T RH +
Sbjct: 72 FATLHTRTRHTK 83
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
E+P+ C + CD + + + H+R HTG++P+Q C +C S Q
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ-------------CRICMRNFSQQA 48
Query: 297 HLESHMLIHTDQKPYLCDHC 316
L +H+ HT +KP+ CD C
Sbjct: 49 SLNAHIRTHTGEKPFACDIC 68
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 211 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+P+ C + C+ RF+ L H+R HT +KP +C IC + + + H+R+HTGE+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 269 PYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQK 309
P+ C++C ++ H IH QK
Sbjct: 62 PF-------------ACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C C ++ L H+++H+ E+P C +C R F T+ + H H
Sbjct: 37 CRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHV 232
RH+ H RP+ C VC + FK L H+ HTG+KP++C C RF RHV
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 190 CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSIC 247
C + F + H++ H G++P+ C C +F LV H++ HT KP++C+IC
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKPYECNIC 71
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 247 CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHT 306
C + S+ HM H G RPY C +C + HL HM IHT
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYG-------------CGVCGKKFKMKHHLVGHMKIHT 61
Query: 307 DQKPYLCDHCDQ 318
KPY C+ C +
Sbjct: 62 GIKPYECNICAK 73
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHT 208
C C ++ L H+K H+ +P++C++C + F S H+ + T
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCT 89
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 208 TGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGE 267
+G K + C+ C FT + RH+ H +P+ C +C + HM+ HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 268 RPYQ 271
+PY+
Sbjct: 64 KPYE 67
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Query: 152 VVAPAHMCNY--CNYTSPKRYLLARHLKSHSEERPHKCS--VCERGFKTIASLQNHINTH 207
VV ++C++ C K + L HL H+ E+P C CE+GF ++ L H TH
Sbjct: 8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Query: 208 TGVKPHKCKY--CESRFTTSGELVRHV-RYKHTHEKPHKCSI--CDYASVELSKMRNHMR 262
TG K C C+ RFTT + +H R+ + + C C A + ++++ H
Sbjct: 68 TGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Query: 263 SHTGERPYQLHCKSHEG 279
SHT + PY+ HEG
Sbjct: 128 SHTQQLPYEC---PHEG 141
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 246 ICDYASVELS-----KMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLES 300
IC +A + K++ H+ HTGE+P+ CK E C +S HL
Sbjct: 14 ICSFADCGAAYNKNWKLQAHLCKHTGEKPFP--CKE---------EGCEKGFTSLHHLTR 62
Query: 301 HMLIHTDQKPYLCD 314
H L HT +K + CD
Sbjct: 63 HSLTHTGEKNFTCD 76
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 52.0 bits (123), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 180 SEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYK 235
S H C C + + + L+ H+ THTG KP+ C + C +F S EL RH R K
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-K 60
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSH 264
HT +P +C CD A + HM+ H
Sbjct: 61 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 157 HMCNY--CNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKP 212
H C+Y C T K L HL++H+ E+P+ C C F L H HTG +P
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 213 HKCKYCESRFTTSGELVRHVR 233
+C+ C+ F+ S L H++
Sbjct: 67 FQCQKCDRAFSRSDHLALHMK 87
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 22/81 (27%)
Query: 247 CDYAS-----VELSKMRNHMRSHTGERPYQL-----------------HCKSHEGEKCWK 284
CDYA + S ++ H+R+HTGE+PY H + H G + ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 285 CELCPYASSSQRHLESHMLIH 305
C+ C A S HL HM H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 31.6 bits (70), Expect = 0.57, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 162 CNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C + + L RH + H+ RP +C C+R F L H+ H
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 288 CPYASSSQRHLESHMLIHTDQKPYLCD 314
C + HL++H+ HT +KPY CD
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCD 40
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 190 CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSIC 247
C + + + L+ H+ THTG KP+ C + C +F S EL RH R KHT +P +C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKC 71
Query: 248 DYASVELSKMRNHMRSH 264
D A + HM+ H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 157 HMCNY--CNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKP 212
H C+Y C T K L HL++H+ E+P+ C C F L H HTG +P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 213 HKCKYCESRFTTSGELVRHVR 233
+C+ C+ F+ S L H++
Sbjct: 66 FQCQKCDRAFSRSDHLALHMK 86
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 22/81 (27%)
Query: 247 CDYAS-----VELSKMRNHMRSHTGERPYQL-----------------HCKSHEGEKCWK 284
CDYA + S ++ H+R+HTGE+PY H + H G + ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 285 CELCPYASSSQRHLESHMLIH 305
C+ C A S HL HM H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 31.6 bits (70), Expect = 0.66, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 162 CNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C + + L RH + H+ RP +C C+R F L H+ H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 28.1 bits (61), Expect = 7.0, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 288 CPYASSSQRHLESHMLIHTDQKPYLCD 314
C + HL++H+ HT +KPY CD
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCD 39
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 158 MCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKY 217
+C +C K Y L H ++H++ERP+ C +C + F+ L++H H+ KP KC+
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 218 CESRFTTSGELVRH 231
C F S L H
Sbjct: 79 CGKGFCQSRTLAVH 92
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 215 CKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHC 274
CK+C FT S L+ H R HT E+P+ C IC A +R+H H+ E+P+
Sbjct: 20 CKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF---- 74
Query: 275 KSHEGEKCWKCELCPYASSSQRHLESHMLIH 305
KC+ C R L H +H
Sbjct: 75 ---------KCQECGKGFCQSRTLAVHKTLH 96
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
Query: 246 ICDYASVELSKMRN---HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHM 302
IC + +K N H R+HT ERPY C++C A Q HL H
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYT-------------CDICHKAFRRQDHLRDHR 65
Query: 303 LIHTDQKPYLCDHCDQ 318
IH+ +KP+ C C +
Sbjct: 66 YIHSKEKPFKCQECGK 81
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
+ C+ C+ ++ L H HS+E+P KC C +GF +L H H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 19/110 (17%)
Query: 212 PHKCKYCESRFTTSGELVRHVRYKHTHE-KPHKCSICDYASVELSKMRNHMRSHTGERPY 270
PHK C F + + +H+ HTH + H C+ C A VE SK++ H HTGE+P+
Sbjct: 9 PHK--GCTKMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 271 QLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC--DHCDQ 318
Q + EG C S +L +H+ IHT +PY+C D C++
Sbjct: 64 QC---TFEG--------CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNK 102
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELV 229
+ +HL +H R H C+ C + F + L+ H HTG KP +C + C RF+ L
Sbjct: 23 MRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 230 RHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQ 271
HVR HT ++P+ C C+ + + +++H+ +H + Q
Sbjct: 82 THVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 156 AHMCNYCNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPH 213
H+C C + L RH H+ E+P +C+ C + F +L+ H+ HTG +P+
Sbjct: 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 214 KCKY--CESRFTTSGELVRHV 232
C + C +F S L H+
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHI 114
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 145 SKLNKKQVVAPA---HMCNY--CNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTI 197
SKL + Q+V C + C + L H++ H+ +RP+ C C + F
Sbjct: 48 SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107
Query: 198 ASLQNHINTHTGVK 211
+L++HI TH K
Sbjct: 108 TNLKSHILTHAKAK 121
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 162 CNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESR 221
C+ ++ L H++ H+ ++P +C +C R F L HI THTG KP C C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 222 FTTSGELVRHVRYKHT 237
F T H R +HT
Sbjct: 72 FAT-----LHTRDRHT 82
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 211 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+P+ C + C+ RF+ L H+R HT +KP +C IC + + + H+R+HTGE+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 269 PYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQK 309
P+ C++C ++ + H IH QK
Sbjct: 62 PF-------------ACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
E+P+ C + CD + + + H+R HTG++P+Q C +C S
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ-------------CRICMRNFSQHT 48
Query: 297 HLESHMLIHTDQKPYLCDHC 316
L H+ HT +KP+ CD C
Sbjct: 49 GLNQHIRTHTGEKPFACDIC 68
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C C + L +H+++H+ E+P C +C R F T+ + H H
Sbjct: 37 CRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERP 269
KP+KC C++ F G L H + HT EKP++C+IC + ++ H R H+GE+P
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
++P+KC C+ F+ +L +H HTG KP++C C ++F L H R H+ EKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEKP 73
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
+ C+ C + + LA H H+ E+P++C++C F A+L+ H H+G KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHL 298
+KP+KC C + + +H HTGE+PY +C +C + +L
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPY-------------RCNICGAQFNRPANL 61
Query: 299 ESHMLIHTDQKP 310
++H IH+ +KP
Sbjct: 62 KTHTRIHSGEKP 73
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCD 317
+K +KC+ C + + +L SH +HT +KPY C+ C
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICG 52
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 187 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSI 246
C VC+R + + SL+ H N H+ K + C+YCE F + +H HT E+ ++C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGERRYQCLA 83
Query: 247 CDYASVELSKMRNHMRSHTGERP------YQLH-CKS 276
C + + M +H++S + P Y+LH C+S
Sbjct: 84 CGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRS 120
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
L RH HS E+ + C CE+ F H HTG + ++C C F + H
Sbjct: 38 LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97
Query: 232 VRYKHTHE 239
++ H+ +
Sbjct: 98 IKSVHSQD 105
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 155 PAHMCNYCNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKP 212
P M N NY PK RP+ C V C+R F L HI HTG KP
Sbjct: 3 PHPMNNLLNYVVPK-------------MRPYACPVESCDRRFSRSDELTRHIRIHTGQKP 49
Query: 213 HKCKYCESRFTTSGELVRHVR 233
+C+ C F+ S L H+R
Sbjct: 50 FQCRICMRNFSRSDHLTTHIR 70
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 210 VKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHT 265
++P+ C C+ RF+ S EL RH+R HT +KP +C IC + H+R+HT
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHT 208
L RH++ H+ ++P +C +C R F L HI THT
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 240 KPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRH 297
+P+ C + CD ++ H+R HTG++P+ +C +C S H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPF-------------QCRICMRNFSRSDH 64
Query: 298 LESHMLIHT 306
L +H+ HT
Sbjct: 65 LTTHIRTHT 73
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 157 HMCNY--CNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKP 212
++C++ C K + L HL H+ E+P C CE+GF ++ L H THTG K
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 213 HKCKY--CESRFTTSGELVRHVRYKH 236
C C+ RFTT + +H H
Sbjct: 64 FTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 35.8 bits (81), Expect = 0.036, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 256 KMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCD 314
K++ H+ HTGE+P+ CK E C +S HL H L HT +K + CD
Sbjct: 20 KLQAHLSKHTGEKPFP--CKE---------EGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKH 236
+P +C +C R F L HI THTG KP C C +F S E RH +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 210 VKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSIC 247
+KP +C+ C F+ S L H+R HT EKP C IC
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDIC 37
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 283 WKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
++C +C S HL +H+ HT +KP+ CD C +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 39
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGERPY 270
KP +C IC + H+R+HTGE+P+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 32
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGF 194
C C + L H+++H+ E+P C +C R F
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 192 RGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSI--C 247
+ FK L NHI HTG KP C + C F S L H R HT EKP KC C
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGEKPFKCEFEGC 128
Query: 248 DYASVELSKMRNHMRSHTGER 268
D S + HM HT ++
Sbjct: 129 DRRFANSSDRKKHMHVHTSDK 149
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 31/123 (25%)
Query: 216 KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDY--------ASVELSKMRNHMRSHTGE 267
K C+ F+T ELV HV +H +C + + K+ NH+R HTGE
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 268 RPY-----------------QLHCKSHEGEKCWKCEL--CP--YASSSQRHLESHMLIHT 306
+P+ ++H ++H GEK +KCE C +A+SS R + HM +HT
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDR--KKHMHVHT 146
Query: 307 DQK 309
K
Sbjct: 147 SDK 149
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 187 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH--VRYKHTHEKPHKC 244
C C + F + L+ H HTG KP +C C + L+ H + E+ C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 245 SICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHML 303
S+C ++R HM SHTGE PY KC C ++ L+SHM+
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPY-------------KCSSCSQQFMQKKDLQSHMI 115
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHV 232
AR+ + SE+ CSVC+ F+ L+ H+ +HTG P+KC C +F +L H+
Sbjct: 56 ARNCMNRSEQ-VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Query: 208 TGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGE 267
+G +C C +F + L H R KHT EKP +C C + H +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 268 RPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
R Q+ + C +C + L HM+ HT + PY C C Q
Sbjct: 62 RSEQV----------FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ 102
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGV--KPHKCK 216
C C Y L RH SHS E+P+ C VC FK + H+ +H G KP+ C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 217 YCESRFTTSGELVRHVRYKHT 237
C F+ L H++ H+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHS 90
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 215 CKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGE--RPYQL 272
C+ C F L RH + H+ EKP+ C +C +M H+RSH G +PY
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI- 67
Query: 273 HCKSHEGEKCWKCELCPYASSSQRHLESHM 302
C+ C S HL H+
Sbjct: 68 ------------CQSCGKGFSRPDHLNGHI 85
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 278 EGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCD 317
G CE+C HL H L H+ +KPY C C
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCG 42
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 276 SHEGEKCWKCELCPYASSSQRHLESHMLIHTDQ--KPYLCDHCDQ 318
SH GEK + C +C + + H+ H KPY+C C +
Sbjct: 29 SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK 73
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 209 GVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 264
G +C YC F ++ L H+R HT EKP+KC C+YA+ + + +R H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 187 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCE 219
CS C + F++ L H+ THTG KP+KC++CE
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE 39
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
C+YC Y L HL++H+ E+P+KC CE SL+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 244 CSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHM 302
CS C + H+R+HTGE+PY KCE C YA++ + L H+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPY-------------KCEFCEYAAAQKTSLRYHL 52
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 279 GEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCD 317
G +C C S +L H+ HT +KPY C+ C+
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE 39
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERP 269
+ +KC C F+ S +L +H R HT EKP+KC C A ++ S + H R HTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 181 EERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
E R +KC C + F + L H THTG KP+KC C F L+ H R HT
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HTGSG 73
Query: 241 P 241
P
Sbjct: 74 P 74
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
C+ C + L++H ++H+ E+P+KC C + F + L H HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 283 WKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
+KC+ C + S L H HT +KPY CD C +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK 54
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHL 298
+ +KC C + S + H R+HTGE K +KC+ C A + HL
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGE-------------KPYKCDECGKAFIQRSHL 62
Query: 299 ESHMLIHTDQKP 310
H +HT P
Sbjct: 63 IGHHRVHTGSGP 74
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 187 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYK 235
C C K + L+ HI THT V+P+ C YC F T G L +H++ K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINT 206
++C C K +L +H+++H++ RP+ C+ C FKT +L H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 285 CELCPYASSSQRHLESHMLIHTDQKPYLCDHCD 317
CE C L+ H+ HTD +PY C +C+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCN 36
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVR 233
E+P+ C C + F + L H HTG KP+KC C F+ + L+ H R
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 13/69 (18%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHL 298
EKP+ C C A S + H R HTGE+PY KC C A S L
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPY-------------KCLECGKAFSQNSGL 58
Query: 299 ESHMLIHTD 307
+H IHT
Sbjct: 59 INHQRIHTS 67
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHT 208
+ C C + +L +H + H+ E+P+KC C + F + L NH HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
EK + C C A S L H +HT +KPY C C +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGK 50
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 187 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHT 237
C VC R F L+ H +HT KP+ C C FT L+RH + H+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 283 WKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
+ CE+C A + Q HL+ H HT++KPY C C++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNR 38
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 158 MCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHI-NTHTG 209
+C C ++ L RH +SH+ E+P+ C +C R F L H H+G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 215 CKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRS-HTG 266
C+ C F L RH R HT+EKP+ C +C+ A + H + H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 244 CSICDYASVELSKMRNHMRSHTGERPY 270
C +C A ++ H RSHT E+PY
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPY 31
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 180 SEERPHKCS--VCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVR 233
S R H CS C + + + L+ H THTG KP C + CE RF S EL RH R
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 156 AHMCNY--CNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTH 207
+H+C++ C T K L H ++H+ E+P CS CER F L H TH
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE-KPHKCSICDYASVELSKMRNHMR 262
TH+G KP++C C +RFT SG + H+ KHT C CD S + H+R
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 177 KSHSEERPHKCSVCERGFKTIASLQNHI-NTHT-GVKPHKCKYCESRFTTSGELVRHVRY 234
++HS E+P++C +C F +++ HI HT V C +C++ +L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 235 KHTHEKP 241
+H++ P
Sbjct: 68 QHSYSGP 74
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVR 233
ERP C+ C + ++ + L H H G +P C C F E+ RH++
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 158 MCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 207
CN+C T L+RH ++H RP C C + F+ + + H+ H
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC+ C A + SK+ H R HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC+ C + F + L H HTG KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP+KC C F+ + +L RH R HT EKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRI-HTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 185 HKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 239
H C VC F + + + H+ + CKYC + F +S L RH+ H E
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EKC+KC++C S HL++H +HT +KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EK +KC +C + S ++ H R HTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+ +KC VC + F + LQ H HTG KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP+ C YC F S ELVRH R HT EKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRI-HTGEKP 40
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+ C C + F A L H HTG KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+ C C A +++ H R HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC+ C + S + NH R HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC+ C + F + L NH HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP+KC C FT + L H R HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRI-HTGEKP 40
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KC C + HL +H IHT +KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P++C VC + F A L H THTG KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP++C +C A + + + H ++HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP++CK C FT L +H + HT EKP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQK-THTGEKP 40
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK ++C++C A + + HL H HT +KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP++C C F + L+RH RY HT EKP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC VC + F+ +SL H HTG KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC +C + S + H R HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGER 268
KP+KC C YAS + + H+R HTGE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
K ++C+YCE RF S L H++ KH+ EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGERP 269
KP++C+ C A + SK+ H R HTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP++C C F+ + +L RH R HT EKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRV-HTGEKP 40
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVKP 212
+P++C+ C + F + L H HTG KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSI 246
KP+ C+ C F+ L H++ HT E+PHKC +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 183 RPHKCSVCERGFKTIASLQNHIN-THTGVKPHKCK 216
+P+ C C +GF L HI HT +PHKC+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC+ C + F+ +SL H TH+G KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC+ C A S + H +H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP++CSIC + + S++ H + HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P++CS+C + F + L H HTG KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P +CS C++ F T ++L H THTG KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP +CS C A S + H R+HTGE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP +C C+ F T L+ H R HT EKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRT-HTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC+ C + F + L NH HTGVKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC+ C + S + NH R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KC C + HL +H IHT KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
E+PHKC+ C + ++ + + H R HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
ERPHKC+ C + F A L H HTG KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
+PHKC C F S L++H R HT EKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRI-HTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGER 268
EKP+KCS C + S++R H + HTGER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTG 209
E+P+KCS C + F + L+ H HTG
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP++C C A + + + H R HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P++C C + F A+L H HTG KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGER 268
EKP+KCS C A S + H +SHTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTG 209
E+P+KCS C + F + L H +HTG
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
S + E+P +C C++ F+ ++L +H HTG KP
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.26, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 237 THEKPHKCSICDYASVELSKMRNHMRSHTGERP 269
T EKP +C CD + + S + +H HTGE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 276 SHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
S EK ++C+ C + + L SH +IHT +KP
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGER 268
KP KCS+C+YA+ S ++ HM H+ E+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 283 WKCELCPYASSSQRHLESHMLIHTDQK 309
+KC LC YA+ S+ +L++HM H+ +K
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHT 208
S S +P KCS+CE ++ ++L+ H+N H+
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHS 33
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+ C C A + S+++ H R HTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+ C C + F + LQ H HTG KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P++C VC + F ASL H H+G KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP++C +C A + + H R H+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
+RP++C C + FKT +SL H +HTG KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
++P++C C A S + H RSHTGE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+ CS C A S + HMR+H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+ CS C + F + + L H+ TH+G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP++C+ C A + S + H + HTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P++C+ C + F ++L H HTG KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC C V+++ +R H+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC C F +A L+ H+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KCE C HL +H+LIHT P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP++CS C + ++ S++ H R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
E+P+ C++C A + S + H + HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
ERP+ C+VC + F ++L H HTG KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGERP 269
KP+ CS C A S + HMR+HTGE+P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 180 SEERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
S +P+ CS C + F++ + L H+ THTG KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 208 TGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
+GVKP+ C C F + L+ H+R HT EKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMR-THTGEKP 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP KC C + S++ +H R HTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP KC+ C RFT + +L H R HT EKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRV-HTGEKP 40
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P KC C + F + L +H HTG KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KCE C + L SH +HT +KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P++C C + F SL HI HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP++C C F+ G L+ H+R HT P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRV-HTGSGP 39
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP++C C A + + H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC VC + F+ + L H + H+G +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC +C A S + H H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+ C IC L +++H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+ C +C F+ + +L++H+ HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P++CSVC + F SL H H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP++CS+C A + H R H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 237 THEKPHKCSICDYASVELSKMRNHMRSHTGE 267
T EKP++CS C A + S++ H R+H+GE
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P++C+ C + F +SL H HTG KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK ++C C A S + L +H IHT +KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 31.6 bits (70), Expect = 0.68, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 212 PHKCKYCESRFTTSGELVRHVRYKHTHEK 240
P KC+ C +FTTSG L RH+R H+ EK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRI-HSGEK 29
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC C A + S H R HTG+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC C + F +S H HTG +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 180 SEERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
S E+P+ C+ C + F + L H HTGVKP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP+KC C FT + LVRH R HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRH-RGIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC+ C + S + H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC+ C + F + L H HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTG 209
E+P++C+ C++ F T ++L H THTG
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGE 267
EKP++C+ C A S + H R+HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC+ C + F+ ++L H HTG KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC+ C A S + H HTGE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KC C A + +L +H +IHT +KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P KC C +GF T + +H +H+G KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP KC C S+ +H RSH+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC C +G+ + +L H HTG +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KCE C +S+ +L+ H +HT ++P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC C + H + HTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+ C+ C + ++ S + H R HTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+ C+ C + S + H R+HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+ C+ C + F + L H THTG KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 211
S ++E+P+KC C + F+T ++L H HTG K
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP++C C A + + + H R HTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP++CK C F+ + L++H R HT EKP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRV-HTGEKP 40
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P++C C + F L H HTG KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P KC C +GF ++L H HTG KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP KC C S + H + HTGE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P KC C + F+ L +H+ HTG KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KC+ C A HL SH+ IHT +KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP KC C A + + +H+R HTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
K ++C+YCE R S L H++ KH+ EK
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKEK 30
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KCS C + F L H HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KCS C A + + H R HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVKP 212
+P+ CS C + F + L H +HTGVKP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSH 264
EKP CS+C S + S M H+R+H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC C +GF L H HTG KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KCE C +R L +H ++HT +KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC+ C S + H R HTGE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC+ C + F+ + L H HTG KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP +C+ C + S++ H R HTGE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P +C+ C + F + L H HTG KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP +C C F+ S +L H R HT EKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRI-HTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC+ C + S + H R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC+ C + F + L H HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP+KC C FT + L RH R HT KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRV-HTGGKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
E+ H+CS C ++ S H R HTGE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
ER H+CS C + F ++ H HTG KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP KC IC + S++ H HT E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KC++C + + L H ++HT +KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P KC +C + F + L H HT KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
K ++C+YCE R S L H++ KH+ EK
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKEK 30
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
K ++C+YCE R S L H++ KH+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP+KC C FT + L RH R HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP+KC+ C + S + H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC+ C + F + L H HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KC C + HL H IHT +KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHT 208
E+P+ C+VC + F A L H+ HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGE 267
EKP+ C++C A V + + H+R HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
K ++C+YCE R S L H++ KH+ EK
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP +C C + S + +H R HTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK ++CE C + HL SH +HT +KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KP+KC C FT + L RH R HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 280 EKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
EK +KC C HL H LIHT +KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+KC C + F+ + L H HTG KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 216 KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDY--------ASVELSKMRNHMRSHTGE 267
K C+ F+T ELV HV +H +C + + K+ NH+R HTGE
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 268 R 268
+
Sbjct: 89 K 89
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 182 ERPHKCSVCERGFKTIASLQNH-INTHT-GVKPHKCKYCESRFTTSGELVRHVRYKH 236
E ++C VC R + I++ H + +H VK + C +C FT + HV+ H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 210 VKPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
+KP+ C +C+ +F G L RHVR HT EK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRI-HTGEK 30
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVK 211
+P+ C C+R F +LQ H+ HTG K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 264
THTG KP+ C +C+ F L H + H +C ++ RN M H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR-RNTMARH 66
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 177 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVK----PHKCKYCESRFTTSGELVRH 231
++H+ E+P+ CS C++ F+ L H + C C FT + RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 27.7 bits (60), Expect = 9.7, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 305 HTDQKPYLCDHCDQ 318
HT +KPY C HCD+
Sbjct: 10 HTGEKPYACSHCDK 23
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVK 211
E+P+KC C +G+K L H HTG K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP KC C + + + H R HTGE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2L7X|A Chain A, Crimean Congo Hemorrhagic Fever Gn Zinc Finger
Length = 77
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 181 EERPHKCSVCERG-FKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHV 232
E +P C++CE I + + +N + C YC SR T+ G L RHV
Sbjct: 2 ELKPQTCTICETTPVNAIDAEMHDLNCSYNI----CPYCASRLTSDG-LARHV 49
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 210 VKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
V P+KC CE F+ L+ H R HT EKP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRM-HTREKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVKP 212
+P+ C+ C + F +SL H HTG KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVKP 212
+ H+C C RGF + L H HTG KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVK 211
+P +C C+R F L+ H THTG K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGER 268
+KP++C C +++ + H R HTGER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 180 SEERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
S E+P CS CE+ F + + L H TH KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 180 SEERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
S E+P++C C + F SL H HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 208 TGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
+G KP++CK C F+ G L H R HT P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERL-HTGSGP 38
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKPH+C C + S++ H R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
KPH+C+ C F+ + +L+ H R HT E P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRI-HTGENP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+P+ C C + F+ + L H H+G KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EK KC CD + S +R H H GE+P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 212
E+ KC C+ F +SL+ H N H G KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
Arabidopsis Thaliana Superman Protein
Length = 39
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTH 207
R + CS C+R F++ +L H+N H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTG 209
RP+ CSVC + F ++ H HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGER 268
KP +C +C A + S + H+R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 237 THEKPHKCSICDYASVELSKMRNHMRSHTGE 267
+ EKP++C+ C A S++ H R+HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 27.7 bits (60), Expect = 8.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 180 SEERPHKCSVCERGFKTIASLQNHINTHTGV 210
S E+P+ CS C + F + L H HTGV
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSHTGERP 269
EKP C C A + + H R HTGE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,668,238
Number of Sequences: 62578
Number of extensions: 390141
Number of successful extensions: 1810
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 740
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)