RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9959
(330 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 121 bits (307), Expect = 1e-33
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 16/160 (10%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
E+P+ C C + F L H THTG KP+KC C F+ +L RH
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 232 VRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY---------------QLHCKS 276
R HT EKP+KC C + + + +R H R+HTGE+PY + H ++
Sbjct: 69 QR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
Query: 277 HEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHC 316
H GEK +KC C + S + +L +H HT +KPY C C
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 107 bits (271), Expect = 2e-28
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYC 218
C C + + L RH ++H+ E+P+KC C + F A+L+ H THTG KP+ C C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 219 ESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHE 278
F+ L H R HT EKP+KC C + + H R+HTGE+PY
Sbjct: 112 GKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPY-------- 162
Query: 279 GEKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
KC C + S + L H HT +K
Sbjct: 163 -----KCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 100 bits (252), Expect = 9e-26
Identities = 45/133 (33%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 199 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMR 258
S G KP+ C C F+ S L H R HT EKP+KC C + + +
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLT 66
Query: 259 NHMRSHTGERPYQ---------------LHCKSHEGEKCWKCELCPYASSSQRHLESHML 303
H R+HTGE+PY+ H ++H GEK + C C + S HL +H
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 304 IHTDQKPYLCDHC 316
HT +KPY C C
Sbjct: 127 THTGEKPYKCPEC 139
Score = 54.0 bits (131), Expect = 6e-09
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 255 SKMRNHMRSHTGERPY---------------QLHCKSHEGEKCWKCELCPYASSSQRHLE 299
S GE+PY H ++H GEK +KC C + S ++ L
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 300 SHMLIHTDQKPYLCDHC 316
H HT +KPY C C
Sbjct: 67 RHQRTHTGEKPYKCPEC 83
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 110 bits (278), Expect = 5e-30
Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 23/152 (15%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHK---------CKYCESRFTT 224
+ C+R F T+ L H+ P + C F
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 225 SGELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKC 282
+LV H+R HT EKP C C ++ H R+HTGE+P++ C E E C
Sbjct: 75 KYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK--C---EFEGC 128
Query: 283 WKCELCPYASSSQRHLESHMLIHTDQKPYLCD 314
+ +A+SS + HM +HT K
Sbjct: 129 DRR----FANSS--DRKKHMHVHTSDKSGPSS 154
Score = 91.6 bits (228), Expect = 1e-22
Identities = 38/126 (30%), Positives = 47/126 (37%), Gaps = 14/126 (11%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHK---------CSVCERGFKTIASLQNHINTHTG 209
C+ T + L H+ P + C + FK L NHI HTG
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87
Query: 210 VKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHT 265
KP C + C F S L H R HT EKP KC CD S + HM HT
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 266 GERPYQ 271
++
Sbjct: 147 SDKSGP 152
Score = 73.9 bits (182), Expect = 3e-16
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 140 EKPKLSKLNKKQVVAPAHMCNYCNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTI 197
P+ + V C + +Y L H++ H+ E+P C C + F
Sbjct: 51 GGPE-----QNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARS 105
Query: 198 ASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCS 245
+L+ H THTG KP KC++ C+ RF S + +H+ HT +K S
Sbjct: 106 ENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH-VHTSDKSGPSS 154
Score = 30.3 bits (69), Expect = 0.51
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 288 CPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
+ + S I Q CD+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDR 33
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 104 bits (263), Expect = 9e-28
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINT---HTGVKPHKCKYCESR-----FTTSGELVRHVR 233
E + C + F + L +HIN+ H K C + F LV H+R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 234 YKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYA 291
+HT EKPHKC+ C + L ++ H+RSHTGE+PY C E E C K ++
Sbjct: 61 -RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYM--C---EHEGCSKA----FS 110
Query: 292 SSSQRHLESHML-IHTDQKPYLCDH 315
++S H H+++KPY+C
Sbjct: 111 NAS--DRAKHQNRTHSNEKPYVCKL 133
Score = 98.4 bits (246), Expect = 2e-25
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 25/161 (15%)
Query: 159 CNYCNYTSPKRYLLARHLKS---HSEERPHKCSVCE-----RGFKTIASLQNHINTHTGV 210
+ C+ + L H+ S H E + C R FK L H+ HTG
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 211 KPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKC--SICDYASVELSKMRNHM-RSHT 265
KPHKC + C ++ L H+R HT EKP+ C C A S H R+H+
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 266 GERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHT 306
E+PY CK C K Y S L H+
Sbjct: 125 NEKPYV--CKLPG---CTKR----YTDPS--SLRKHVKTVH 154
Score = 91.1 bits (227), Expect = 1e-22
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 157 HMCNYCNYTSPKR-----YLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTG 209
+C++ + R Y+L H++ H+ E+PHKC+ C + + + +L+ H+ +HTG
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 210 VKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHT 265
KP+ C++ C F+ + + +H H++EKP+ C + C + S +R H+++
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Query: 266 G 266
G
Sbjct: 155 G 155
Score = 37.6 bits (88), Expect = 0.001
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 280 EKCWKCELCPYASSSQRHLESHML---IHTDQKPYLCDHCDQIR 320
E + + C SQ L H+ IH ++K ++C R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSR 44
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 102 bits (257), Expect = 1e-27
Identities = 41/94 (43%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHT 237
S PHKC VC + F L+ H+ HTGVKP+KCK C+ S L +H+R H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHS 60
Query: 238 HEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
E+P KC IC YAS S++ H+RSHTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPS 94
Score = 99.0 bits (248), Expect = 3e-26
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHT 265
+ PHKC+ C F+ +L H+R HT KP+KC CDYA+ + S + H+R H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 266 GERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
ERP+ KC++CPYAS + L H+ HT
Sbjct: 61 DERPF-------------KCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 77.8 bits (193), Expect = 2e-18
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 216
H C C ++ L H++ H+ +P+KC C+ +SL H+ H+ +P KC+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 217 YCESRFTTSGELVRHVRYKHTHEKPHKC 244
C S +L H+R HT +
Sbjct: 69 ICPYASRNSSQLTVHLR-SHTGDSGPSS 95
Score = 74.8 bits (185), Expect = 4e-17
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQ 295
PHKC +C K++ HMR HTG +PY KC+ C YA++
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPY-------------KCKTCDYAAADS 49
Query: 296 RHLESHMLIHTDQKPYLCDHCD 317
L H+ IH+D++P+ C C
Sbjct: 50 SSLNKHLRIHSDERPFKCQICP 71
Score = 47.0 bits (113), Expect = 3e-07
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 263 SHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCD 317
S P+ KCE+C S + L++HM HT KPY C CD
Sbjct: 2 SSGSSGPH-------------KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCD 43
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 101 bits (253), Expect = 1e-26
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 181 EERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTH 238
E R C C + F+ ++++ H++TH G + H C C F S +L RH HT
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV-HTG 59
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
EKP +C+ C +R H+R HTG+RPY C C K +A S+
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV--CPFDG---CNKK----FAQST-- 108
Query: 297 HLESHMLIHTDQKPY 311
+L+SH+L H K
Sbjct: 109 NLKSHILTHAKAKNN 123
Score = 91.8 bits (229), Expect = 3e-23
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELV 229
+ +HL +H R H C+ C + F + L+ H HTG KP +C + C RF+ L
Sbjct: 23 MRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 230 RHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQ 271
HVR HT ++P+ C C+ + + +++H+ +H + Q
Sbjct: 82 THVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 53.7 bits (130), Expect = 2e-09
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
+ C C + S MR H+ +H G R + C C A
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVH-------------VCAECGKAFVESS 48
Query: 297 HLESHMLIHTDQKPYLCDH 315
L+ H L+HT +KP+ C
Sbjct: 49 KLKRHQLVHTGEKPFQCTF 67
Score = 29.8 bits (68), Expect = 0.54
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 12/50 (24%)
Query: 267 ERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHC 316
R C C K + H+ H + ++C C
Sbjct: 3 PRTIA--CPHKG---CTK------MFRDNSAMRKHLHTHGP-RVHVCAEC 40
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 103 bits (258), Expect = 1e-26
Identities = 42/171 (24%), Positives = 57/171 (33%), Gaps = 28/171 (16%)
Query: 175 HLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVR 230
+ + CS C + LQ H+ HTG KP CK CE FT+ L R
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 231 HVRYKHTHEKPHKCS--ICDYASVELSKMRNHMRSHTGER--PY---------------- 270
H HT EK C CD + M+ H + Y
Sbjct: 63 HSLT-HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 271 -QLHCKSHEGEKCWKC--ELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
++H SH + ++C E C S L+ H +H D C
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSF 172
Score = 86.1 bits (214), Expect = 2e-20
Identities = 33/141 (23%), Positives = 47/141 (33%), Gaps = 26/141 (18%)
Query: 202 NHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCS--ICDYASVELSKM 257
K + C + C + + + +L H+ KHT EKP C C+ L +
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 258 RNHMRSHTGERPY-----------------QLHCKSHEGEKCW--KCEL--CPYASSSQR 296
H +HTGE+ + + H K C C A
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120
Query: 297 HLESHMLIHTDQKPYLCDHCD 317
L+ H HT Q PY C H
Sbjct: 121 QLKVHQFSHTQQLPYECPHEG 141
Score = 51.8 bits (125), Expect = 3e-08
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 172 LARHLKSHSEERPHKCS--VCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 229
L H SH+++ P++C C++ F + L+ H H G K C T +
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL 181
Query: 230 RHVRYKHT 237
+HV H
Sbjct: 182 KHVAECHQ 189
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 100 bits (252), Expect = 1e-26
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 182 ERPHKCS--VCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHT 237
+RP C+ C + + ++ LQ H HTG KP++C + CE RF+ S +L RH R +HT
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHT 62
Query: 238 HEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRH 297
KP +C C ++ H R+HTGE+P+ C+ C K +A S
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS--CRWPS---CQKK----FARSD--E 111
Query: 298 LESHMLIH 305
L H +H
Sbjct: 112 LVRHHNMH 119
Score = 85.6 bits (213), Expect = 5e-21
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 208 TGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRS 263
+ +P C Y C R+ L H R KHT EKP++C C+ +++ H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 264 HTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCD 317
HTG +P+ +C+ C S HL++H HT +KP+ C
Sbjct: 61 HTGVKPF-------------QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS 101
Score = 83.0 bits (206), Expect = 6e-20
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 172 LARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 229
L H + H+ E+P++C CER F L+ H HTGVKP +CK C+ +F+ S L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 230 RHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSH 264
H R HT EKP C C ++ H H
Sbjct: 84 THTR-THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 99.5 bits (249), Expect = 4e-26
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 16/134 (11%)
Query: 179 HSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTH 238
S +C C + F + L+ H HTG KP +C C + L+ H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 239 --EKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
E+ CS+C ++R HM SHTGE PY KC C ++
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY-------------KCSSCSQQFMQKK 108
Query: 297 HLESHML-IHTDQK 309
L+SHM+ +H+
Sbjct: 109 DLQSHMIKLHSGPS 122
Score = 89.1 bits (222), Expect = 3e-22
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 17/115 (14%)
Query: 207 HTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRS--- 263
+G +C C +F + L H R KHT EKP +C C + H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 264 HTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
+ E+ + C +C + L HM+ HT + PY C C Q
Sbjct: 61 NRSEQVF-------------TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ 102
Score = 85.2 bits (212), Expect = 1e-20
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNH---INTHTGVKPHKC 215
C C+ +Y L H + H+ E+P +C C + + +L H + + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 216 KYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHM-RSHTGER 268
C+ F EL H+ HT E P+KCS C ++ +++HM + H+G
Sbjct: 70 SVCQETFRRRMELRLHMV-SHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 89.8 bits (224), Expect = 1e-22
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 1/100 (1%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
+ ++ C C R F +L H THT +P+ C C F L H
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 232 VRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
H+ EKP KC C + + H H
Sbjct: 65 RYI-HSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPT 103
Score = 89.8 bits (224), Expect = 1e-22
Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 14/115 (12%)
Query: 199 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMR 258
K CK+C FT S L+ H R HT E+P+ C IC A +R
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLR 62
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+H H+ E+P+ KC+ C R L H +H
Sbjct: 63 DHRYIHSKEKPF-------------KCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 72.5 bits (179), Expect = 3e-16
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYC 218
C +C K Y L H ++H++ERP+ C +C + F+ L++H H+ KP KC+ C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 219 ESRFTTSGELVRHVRYKHTHEKPHKCS 245
F S L H H +
Sbjct: 80 GKGFCQSRTLAVHKTL-HMQTSSPTAA 105
Score = 67.8 bits (167), Expect = 1e-14
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 225 SGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWK 284
S +K C C + + H R+HT ERPY
Sbjct: 2 SSGSSGGRLP-SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPY-------------T 47
Query: 285 CELCPYASSSQRHLESHMLIHTDQKPYLCDHC 316
C++C A Q HL H IH+ +KP+ C C
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 86.0 bits (214), Expect = 2e-21
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 182 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 239
ERP+ C V C+R F SL HI HTG KP +C+ C F+ S L H+R HT E
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGE 60
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGER 268
KP C IC + + H + H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 77.1 bits (191), Expect = 4e-18
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 211 KPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+P+ C C+ RF+ SG L RH+R HT +KP +C IC + H+R+HTGE+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 269 PYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQK 309
P+ C++C + + H IH QK
Sbjct: 62 PF-------------ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 68.6 bits (169), Expect = 4e-15
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 232 VRYKHTHEK 240
+ H +K
Sbjct: 82 TK-IHLRQK 89
Score = 66.0 bits (162), Expect = 4e-14
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 15/80 (18%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQR 296
E+P+ C + CD + + H+R HTG++P+ +C +C S
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPF-------------QCRICMRNFSRSD 48
Query: 297 HLESHMLIHTDQKPYLCDHC 316
HL +H+ HT +KP+ CD C
Sbjct: 49 HLTTHIRTHTGEKPFACDIC 68
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 83.7 bits (208), Expect = 1e-20
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 199 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE--KPHKCSICDYASVELSK 256
S + TH+G KP++C C +RFT SG + H+ + E C CD S
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSD 60
Query: 257 MRNHMRS-HTGERPY 270
+ H+R H+ P
Sbjct: 61 LGVHLRKQHSYSGPS 75
Score = 81.8 bits (203), Expect = 5e-20
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG--VKPHKCKYCESRFTTSGELV 229
++HS E+P++C +C F +++ HI V C +C++ +L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 230 RHVRYKHTHEKPH 242
H+R +H++ P
Sbjct: 63 VHLRKQHSYSGPS 75
Score = 67.9 bits (167), Expect = 5e-15
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 226 GELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGE--RPYQLHCKSHEGEKCW 283
G R H+ EKP++C IC + M+ H+ E +
Sbjct: 1 GSSGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKF------------- 46
Query: 284 KCELCPYASSSQRHLESHM-LIHTDQKPY 311
C C + + L H+ H+ P
Sbjct: 47 HCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 58.3 bits (142), Expect = 1e-11
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 15/64 (23%)
Query: 256 KMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHT--DQKPYLC 313
+ R+H+GE+PY +C +C + ++ H+L + + C
Sbjct: 2 SSGSSGRTHSGEKPY-------------ECYICHARFTQSGTMKMHILQKHTENVAKFHC 48
Query: 314 DHCD 317
HCD
Sbjct: 49 PHCD 52
Score = 37.1 bits (87), Expect = 6e-04
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 297 HLESHMLIHTDQKPYLCDHCDQ 318
S H+ +KPY C C
Sbjct: 2 SSGSSGRTHSGEKPYECYICHA 23
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 84.2 bits (209), Expect = 1e-20
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 179 HSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRY 234
+ R H C C + + + L+ H+ THTG KP+KC + C+ RF S EL RH R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR- 68
Query: 235 KHTHEKPHKCSICDYASVELSKMRNHMRSHT 265
KHT KP +C +C+ + + HM+ H
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 67.7 bits (166), Expect = 2e-14
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 157 HMCN--YCNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKP 212
H C+ C K L HL++H+ E+P+KC+ C+ F L H HTG KP
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 213 HKCKYCESRFTTSGELVRHVRYKHT 237
+C C F+ S L H++ +H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMK-RHQ 99
Score = 60.7 bits (148), Expect = 4e-12
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 236 HTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASS 293
+ H C C + S ++ H+R+HTGE+PY+ C E C +A S
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYK--C---TWEGCDWR----FARS 60
Query: 294 SQRHLESHMLIHTDQKPYLCDHCD 317
L H HT KP+ C C+
Sbjct: 61 D--ELTRHYRKHTGAKPFQCGVCN 82
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 82.2 bits (204), Expect = 4e-20
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPH 242
+P +C +C R F L HI THTG KP C C +F S E RH P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQH-ILPI 59
Query: 243 KCSICDYA---SVELSKMRNHMRSHTGER 268
+ + L ++ GER
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 72.5 bits (179), Expect = 1e-16
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 210 VKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERP 269
+KP +C+ C F+ S L H+R HT EKP C IC + + H P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQH-ILP 58
Query: 270 YQLHCKSHEGEKCWKCELCPYASSSQRHLESHML---IHTDQK 309
+ S HLE+ + ++
Sbjct: 59 I-------------LEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 65.2 bits (160), Expect = 6e-14
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLE 299
KP +C IC + H+R+HTGE+P+ C++C + +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPF-------------ACDICGRKFARSDERK 48
Query: 300 SHMLIHTDQKPYLCDHCD 317
H I P L D +
Sbjct: 49 RHRDIQH-ILPILEDKVE 65
Score = 37.5 bits (88), Expect = 5e-04
Identities = 7/43 (16%), Positives = 10/43 (23%), Gaps = 4/43 (9%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHIN---THTGVK 211
RH P E L+N + G +
Sbjct: 47 RKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 80.2 bits (199), Expect = 5e-19
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHT 265
+G K + C+ C FT + RH+ H +P+ C +C + HM+ HT
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 266 GERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHC 316
G +PY +C +C + H + + K Y
Sbjct: 62 GIKPY-------------ECNICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97
Score = 79.0 bits (196), Expect = 1e-18
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 177 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKH 236
S ++ + C C + F + H++ H G++P+ C C +F LV H++ H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-H 60
Query: 237 THEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCK 275
T KP++C+IC + H + + Y+
Sbjct: 61 TGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYE--AA 95
Score = 74.8 bits (185), Expect = 5e-17
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
RH+ H RP+ C VC + FK L H+ HTG+KP++C C RF RH
Sbjct: 25 RDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Query: 232 VRYKHTHEKPHKCSIC 247
V + K ++ +
Sbjct: 85 V---TSCTKSYEAAKA 97
Score = 52.4 bits (127), Expect = 4e-09
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYC 218
C C ++ L H+K H+ +P++C++C + F S H+ + K ++
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKA 97
Query: 219 ESRFTTSGEL 228
E T +
Sbjct: 98 EQNTTEASGP 107
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 77.9 bits (193), Expect = 1e-18
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHT 265
+ + P KC C ++ L H R H ++P KC+ C + + + S + HM+
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 266 GERPYQ 271
G+
Sbjct: 62 GDMSGP 67
Score = 72.1 bits (178), Expect = 1e-16
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 235 KHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSS 294
+ P KCS C Y+ + +R H R H +RP+ KC C + +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPF-------------KCNYCSFDTKQ 49
Query: 295 QRHLESHMLIHTDQKPY 311
+L HM
Sbjct: 50 PSNLSKHMKKFHGDMSG 66
Score = 69.4 bits (171), Expect = 2e-15
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHT 237
S S P KCS C + A+L+ H H +P KC YC L +H++ K
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KFH 61
Query: 238 HEKPHKCS 245
+ S
Sbjct: 62 GDMSGPSS 69
Score = 55.6 bits (135), Expect = 1e-10
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 262 RSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCD 317
S + P KC C Y+ SS+ L H IH +P+ C++C
Sbjct: 2 SSGSSGHPE-------------KCSECSYSCSSKAALRIHERIHCTDRPFKCNYCS 44
Score = 51.0 bits (123), Expect = 7e-09
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
C+ C+Y+ + L H + H +RP KC+ C K ++L H+ G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 77.6 bits (192), Expect = 2e-18
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 179 HSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKH 236
+ + C + + + L+ H+ THTG KP+ C + C +F S EL RH R KH
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KH 60
Query: 237 THEKPHKCSICDYASVELSKMRNHMRSH 264
T +P +C CD A + HM+ H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 69.5 bits (171), Expect = 2e-15
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 207 HTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSH 264
T C +T S L H+R HT EKP+ C C + ++ H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 265 TGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIH 305
TG RP+ +C+ C A S HL HM H
Sbjct: 61 TGHRPF-------------QCQKCDRAFSRSDHLALHMKRH 88
Score = 64.1 bits (157), Expect = 2e-13
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCK 216
C T K L HL++H+ E+P+ C C F L H HTG +P +C+
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 217 YCESRFTTSGELVRHVRYKHTH 238
C+ F+ S L H++ H
Sbjct: 70 KCDRAFSRSDHLALHMK---RH 88
Score = 64.1 bits (157), Expect = 2e-13
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 235 KHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSS 294
K T + C + S ++ H+R+HTGE+PY HC C +A S
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPY--HCDWDG---CGWK----FARSD 51
Query: 295 QRHLESHMLIHTDQKPYLCDHCD 317
L H HT +P+ C CD
Sbjct: 52 --ELTRHYRKHTGHRPFQCQKCD 72
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 75.2 bits (186), Expect = 1e-17
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 199 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMR 258
+H + KP+KC C++ F G L H HT EKP++C+IC + ++
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANLK 62
Query: 259 NHMRSHTGERPY 270
H R H+GE+PY
Sbjct: 63 THTRIHSGEKPY 74
Score = 66.7 bits (164), Expect = 1e-14
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
H ++P+KC C+ F+ +L +H HTG KP++C C ++F L H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 232 VRYKHTHEKPH 242
R H+ EKP+
Sbjct: 65 TR-IHSGEKPY 74
Score = 63.6 bits (156), Expect = 2e-13
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 225 SGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWK 284
H +KP+KC C + + +H HTGE+PY +
Sbjct: 2 GHHHHHHSHM-THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPY-------------R 47
Query: 285 CELCPYASSSQRHLESHMLIHTDQKPY 311
C +C + +L++H IH+ +KPY
Sbjct: 48 CNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 50.9 bits (123), Expect = 6e-09
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
Query: 255 SKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCD 314
+H ++PY KC+ C + + +L SH +HT +KPY C+
Sbjct: 3 HHHHHHSHMTHSDKPY-------------KCDRCQASFRYKGNLASHKTVHTGEKPYRCN 49
Query: 315 HC 316
C
Sbjct: 50 IC 51
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 74.1 bits (183), Expect = 3e-17
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 207 HTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCS--ICDYASVELSKMRNHMR 262
+G C + C F+ L H +Y+H H+K C C + ++ HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 263 SHTGERPYQ 271
H+ R Y
Sbjct: 62 LHSDTRDYI 70
Score = 65.3 bits (160), Expect = 6e-14
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 179 HSEERPHKCSV--CERGFKTIASLQNHI-NTHTGVKPHKCKY--CESRFTTSGELVRHVR 233
S C C R F L +H H K C C F L H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 234 YKHTHEKPHKCSIC 247
H+ + + C
Sbjct: 62 -LHSDTRDYICEFS 74
Score = 49.5 bits (119), Expect = 3e-08
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 172 LARHLK-SHSEERPHKCS--VCERGFKTIASLQNHINTHTGVKPHKCKYC 218
L H K H ++ C C + F L+ H+ H+ + + C++
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 38.7 bits (91), Expect = 2e-04
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 12/55 (21%)
Query: 264 HTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLI-HTDQKPYLCDHCD 317
+G C C + +++ +L H H QK + C
Sbjct: 2 SSGSSGMP--CDFPG---CGRI----FSNRQ--YLNHHKKYQHIHQKSFSCPEPA 45
Score = 29.4 bits (67), Expect = 0.36
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 172 LARHLKSHSEERPHKCSVCERGF 194
L H+K HS+ R + C
Sbjct: 56 LKEHMKLHSDTRDYICEFSGPSS 78
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 72.9 bits (180), Expect = 1e-16
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 207 HTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTG 266
+G C+ C F L RH H+ EKP+ C +C +M H+RSH G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 267 E--RPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHM-LIHTDQK 309
+PY C+ C S HL H+ +H+
Sbjct: 61 SVGKPY-------------ICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 72.5 bits (179), Expect = 2e-16
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 179 HSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTH 238
S C +C + F+ + L H +H+G KP+ C C RF + HVR H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDG 60
Query: 239 E--KPHKCSICDYASVELSKMRNHM-RSHTGER 268
KP+ C C + H+ + H+G
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 66.7 bits (164), Expect = 3e-14
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 15/83 (18%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQ 295
+ C IC ++ + H SH+GE+PY C +C +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPY-------------SCPVCGLRFKRK 48
Query: 296 RHLESHMLIHT--DQKPYLCDHC 316
+ H+ H KPY+C C
Sbjct: 49 DRMSYHVRSHDGSVGKPYICQSC 71
Score = 65.6 bits (161), Expect = 6e-14
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG--VKPHKCK 216
C C Y L RH SHS E+P+ C VC FK + H+ +H G KP+ C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 217 YCESRFTTSGELVRHVRYKHTHEK 240
C F+ L H++ H+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 70.6 bits (174), Expect = 7e-16
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 199 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE----KPHKCSICDYASVEL 254
S + THTG KP+ C +C+ F L H + ++ CS C
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 255 SKMRNHMRSHTGERPYQLHCKSHEGEKCWK 284
+ M H + G EGE
Sbjct: 61 NTMARHADNCAGPDGV-------EGENSGP 83
Score = 69.9 bits (172), Expect = 2e-15
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG----VKPHKCKYCESRFTTSGE 227
++H+ E+P+ CS C++ F+ L H + C C FT
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 228 LVRHVRYKHTHEKPHKCSIC 247
+ RH +
Sbjct: 63 MARHAD-NCAGPDGVEGENS 81
Score = 66.8 bits (164), Expect = 2e-14
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 226 GELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKC 285
G R HT EKP+ CS CD + + H + + + + C
Sbjct: 1 GSSGSSGRT-HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP---------NFVPAAFVC 50
Query: 286 ELCPYASSSQRHLESHMLIHTDQKPYLCDHC 316
C + + + H ++
Sbjct: 51 SKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 49.1 bits (118), Expect = 5e-08
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEE----RPHKCSVCERGFKTIASLQNHINTHTGVKPHK 214
C++C+ T ++ LL H K + + CS C + F ++ H + G +
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 77
Query: 215 CKYC 218
+
Sbjct: 78 GENS 81
Score = 33.7 bits (78), Expect = 0.010
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 297 HLESHMLIHTDQKPYLCDHCD 317
S HT +KPY C HCD
Sbjct: 2 SSGSSGRTHTGEKPYACSHCD 22
Score = 27.5 bits (62), Expect = 1.7
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGF 194
C+ C T +R +ARH + + +
Sbjct: 50 CSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 70.5 bits (173), Expect = 7e-16
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 179 HSEERPHKCSVCERGFKTIASLQNHINTHT---GVKPHKCKYCESRFTTSGELVRHVRYK 235
S +C +C + ASL H H C++C RF + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 236 HTHEKPHKCSIC 247
H
Sbjct: 62 HPALLLAPQESS 73
Score = 64.7 bits (158), Expect = 1e-13
Identities = 12/77 (15%), Positives = 17/77 (22%), Gaps = 4/77 (5%)
Query: 207 HTGVKPHKCKYCESRFTTSGELVRHVRYKHTH---EKPHKCSICDYASVELSKMRNHMRS 263
+G +C+ C L H R KH C C + + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 264 HTGERPYQLHCKSHEGE 280
S
Sbjct: 61 SHPALLLAPQESSGPSS 77
Score = 61.7 bits (150), Expect = 1e-12
Identities = 10/81 (12%), Positives = 19/81 (23%), Gaps = 10/81 (12%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQ 295
+ +C IC + + + + H R H + CE C
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETV----------AALRFPCEFCGKRFEKP 51
Query: 296 RHLESHMLIHTDQKPYLCDHC 316
+ +H
Sbjct: 52 DSVAAHRSKSHPALLLAPQES 72
Score = 45.9 bits (109), Expect = 5e-07
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 16/57 (28%)
Query: 264 HTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQ---KPYLCDHCD 317
+G Q CE+C + + L H H + + C+ C
Sbjct: 2 SSGSSGLQ-------------CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCG 45
Score = 44.7 bits (106), Expect = 1e-06
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSE---ERPHKCSVCERGFKTIASLQNHINTHTGVKPH 213
C C +T ++ L H + H+E C C + F+ S+ H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 214 KCK 216
+
Sbjct: 68 APQ 70
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 70.5 bits (174), Expect = 8e-16
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 186 KCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
C +C + FK ++L H+ H+ +P+ C+YC RF ++ +H HT EKPHKC
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKCQ 61
Query: 246 ICDYASVELSKMRNHMRSHTG 266
+C A + S + H R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 61.3 bits (150), Expect = 2e-12
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 214 KCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLH 273
CK C F S L H+ H+ +P+ C C + S M+ H HTGE+P+
Sbjct: 3 DCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH--- 58
Query: 274 CKSHEGEKCWKCELCPYASSSQRHLESHMLIHT 306
KC++C A S +L +H HT
Sbjct: 59 ----------KCQVCGKAFSQSSNLITHSRKHT 81
Score = 61.3 bits (150), Expect = 2e-12
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYC 218
C C + + L+ HL HS+ RP+ C C + F + ++ H HTG KPHKC+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 219 ESRFTTSGELVRHVRYKHT 237
F+ S L+ H R KHT
Sbjct: 64 GKAFSQSSNLITHSR-KHT 81
Score = 50.9 bits (123), Expect = 1e-08
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 243 KCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHM 302
C IC + S + H+ H+ RPY C+ C + ++ H
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPY-------------PCQYCGKRFHQKSDMKKHT 49
Query: 303 LIHTDQKPYLCDHC 316
IHT +KP+ C C
Sbjct: 50 FIHTGEKPHKCQVC 63
Score = 39.3 bits (93), Expect = 1e-04
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG 209
C YC ++ + +H H+ E+PHKC VC + F ++L H HTG
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 69.4 bits (171), Expect = 2e-15
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 199 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMR 258
S + +KC C F+ S +L +H R HT EKP+KC C A ++ S +
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLI 63
Query: 259 NHMRSHTGERPY 270
H R HTG P
Sbjct: 64 GHHRVHTGSGPS 75
Score = 68.2 bits (168), Expect = 5e-15
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
R E R +KC C + F + L H THTG KP+KC C F L+ H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 232 VRYKHTHEKPHK 243
R HT P
Sbjct: 66 HR-VHTGSGPSS 76
Score = 61.3 bits (150), Expect = 1e-12
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 225 SGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWK 284
SG R + + +KC C + S + H R+HTGE+PY K
Sbjct: 3 SGSSGRSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPY-------------K 48
Query: 285 CELCPYASSSQRHLESHMLIHTDQKPY 311
C+ C A + HL H +HT P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 49.0 bits (118), Expect = 4e-08
Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 13/62 (20%)
Query: 255 SKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCD 314
R Y KC+ C + S L H HT +KPY CD
Sbjct: 4 GSSGRSEWQQRERRRY-------------KCDECGKSFSHSSDLSKHRRTHTGEKPYKCD 50
Query: 315 HC 316
C
Sbjct: 51 EC 52
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 67.6 bits (166), Expect = 6e-15
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVR-YKHTHEKPHKCSICDYASVELSKMRNHMRSH 264
T G ++CK C +T RH + K + C C M H++
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 265 TG 266
Sbjct: 64 HK 65
Score = 66.0 bits (162), Expect = 2e-14
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 179 HSEERPHKCSVCERGFKTIASLQNH--INTHTGVKPHKCKYCESRFTTSGELVRHVRYKH 236
E ++C VC R + I++ H + VK + C +C FT + HV+ H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 45.2 bits (108), Expect = 6e-07
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 15/58 (25%)
Query: 262 RSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLI--HTDQKPYLCDHCD 317
+ GE Y +C++C + + H + + K Y C C
Sbjct: 3 FTKEGEHTY-------------RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCF 47
Score = 40.2 bits (95), Expect = 4e-05
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 159 CNYCNYTSPKRYLLARHLKS--HSEERPHKCSVCERGFKTIASLQNHINTHTGV 210
C C+ RH + + + C C + F ++ H+ +
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 66.9 bits (164), Expect = 2e-14
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 185 HKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEK 240
+ C C + FK L+ H +HT P++C + C+ RF+ L RH + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 241 PHKCSICDYASVELSKMRNHMR 262
K C + + H+
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVA 82
Score = 63.0 bits (154), Expect = 5e-13
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 157 HMCNY--CNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKP 212
++C++ C K L H SH+++ P++C C++ F + L+ H H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 213 HKCKYCESRFTTSGELVRHVRYKH 236
K C T ++HV H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 56.5 bits (137), Expect = 1e-10
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 18/94 (19%)
Query: 213 HKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCS--ICDYASVELSKMRNHMRSHTGER 268
+ C + C F +L H HT + P++C CD S+++ H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 269 PYQLHCKSHEGEKCWKCELCPYASSSQRHLESHM 302
K + C + + H+
Sbjct: 61 CK-------------KDDSCSFVGKTWTLYLKHV 81
Score = 48.8 bits (117), Expect = 5e-08
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 242 HKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLE 299
+ C C A + ++++ H SHT + PY+ C HEG C K ++ S L+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE--CP-HEG--CDKR----FSLPS--RLK 50
Query: 300 SHMLIHTDQKPYLCDHCDQ 318
H +H D C
Sbjct: 51 RHEKVHAGYPCKKDDSCSF 69
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 64.6 bits (157), Expect = 2e-13
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDY--------ASVELSKM 257
K C+ F+T ELV HV +H +C + + K+
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 258 RNHMRSHTGERPYQ 271
NH+R HTGE+
Sbjct: 79 VNHIRVHTGEKSGP 92
Score = 57.7 bits (139), Expect = 4e-11
Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)
Query: 179 HSEERPHKCSVCERGFKTIASLQNHIN-THTGVKPHKCKYCESR--------FTTSGELV 229
+ C+R F T+ L H+ H G C F +LV
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 230 RHVRYKHTHEKPHKCS 245
H+R HT EK S
Sbjct: 80 NHIR-VHTGEKSGPSS 94
Score = 45.0 bits (106), Expect = 2e-06
Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 9/68 (13%)
Query: 157 HMCNYCNYTSPKRYLLARHL-KSHSEERPHK--------CSVCERGFKTIASLQNHINTH 207
C+ T + L H+ H C + FK L NHI H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 208 TGVKPHKC 215
TG K
Sbjct: 86 TGEKSGPS 93
Score = 34.6 bits (79), Expect = 0.007
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C + +Y L H++ H+ E+ S
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 63.9 bits (156), Expect = 2e-13
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 172 LARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGE 227
+ S R H CS C + + + L+ H THTG KP C + CE RF S E
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 228 LVRHVR 233
L RH R
Sbjct: 65 LSRHRR 70
Score = 52.4 bits (126), Expect = 2e-09
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 198 ASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSI--CDYA--- 250
+ + ++ H C + C + S L H R HT EKP CS C+
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFAR 61
Query: 251 SVELSKMRNHMRSH 264
S ELS+ H R+H
Sbjct: 62 SDELSR---HRRTH 72
Score = 42.0 bits (99), Expect = 1e-05
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 235 KHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQ 271
+ + H CS C + S ++ H R+HTGE+P+
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFS 49
Score = 39.7 bits (93), Expect = 7e-05
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 255 SKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCD 314
S + R + C SH G C K Y SS HL++H HT +KP+ C
Sbjct: 3 SGSSGPQIDSSRIRSH--IC-SHPG--CGKT----YFKSS--HLKAHTRTHTGEKPFSCS 51
Query: 315 H 315
Sbjct: 52 W 52
Score = 39.3 bits (92), Expect = 9e-05
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 157 HMCNY--CNYTSPKRYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTH 207
H+C++ C T K L H ++H+ E+P CS CER F L H TH
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 63.6 bits (156), Expect = 2e-13
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
+ HS E+P+ C C + F + L H HTG KP+KC C F+ + L+ H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 232 VRYKHTHEKPH 242
R HT
Sbjct: 62 QRI-HTSGPSS 71
Score = 58.6 bits (143), Expect = 1e-11
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 228 LVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCEL 287
H+ EKP+ C C A S + H R HTGE+PY KC
Sbjct: 2 SSGSSGI-HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPY-------------KCLE 47
Query: 288 CPYASSSQRHLESHMLIHTDQKPY 311
C A S L +H IHT
Sbjct: 48 CGKAFSQNSGLINHQRIHTSGPSS 71
Score = 46.3 bits (111), Expect = 3e-07
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 13/57 (22%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHC 316
H+GE+PY C C A S L H +HT +KPY C C
Sbjct: 5 SSGIHSGEKPY-------------GCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48
Score = 27.8 bits (63), Expect = 0.93
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 298 LESHMLIHTDQKPYLCDHC 316
IH+ +KPY C C
Sbjct: 2 SSGSSGIHSGEKPYGCVEC 20
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 61.9 bits (151), Expect = 7e-13
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 175 HLKSHSE--ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVR 230
+L ++ RP+ C V C+R F L HI HTG KP +C+ C F+ S L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 231 HVRYKHT 237
H+R HT
Sbjct: 68 HIR-THT 73
Score = 61.6 bits (150), Expect = 1e-12
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 200 LQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKM 257
L N++ +P+ C C+ RF+ S EL RH+R HT +KP +C IC +
Sbjct: 9 LLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHL 65
Query: 258 RNHMRSHT 265
H+R+HT
Sbjct: 66 TTHIRTHT 73
Score = 54.2 bits (131), Expect = 5e-10
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 18/88 (20%)
Query: 221 RFTTSGELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQLHCKSHE 278
L+ +V +P+ C + CD ++ H+R HTG++P+Q
Sbjct: 2 EPHPMNNLLNYVV---PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ------- 51
Query: 279 GEKCWKCELCPYASSSQRHLESHMLIHT 306
C +C S HL +H+ HT
Sbjct: 52 ------CRICMRNFSRSDHLTTHIRTHT 73
Score = 41.5 bits (98), Expect = 1e-05
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHT 208
L RH++ H+ ++P +C +C R F L HI THT
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 39.6 bits (93), Expect = 8e-05
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 254 LSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
++ + N++ RPY C E C S L H+ IHT QKP+ C
Sbjct: 6 MNNLLNYVV--PKMRPY----------AC-PVESCDRRFSRSDELTRHIRIHTGQKPFQC 52
Query: 314 DHCD 317
C
Sbjct: 53 RICM 56
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 63.2 bits (153), Expect = 9e-13
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 199 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMR 258
S + + + TG +CK C + + T EL H+ T D + +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN--ETGHYRDDNHETDNNNPKRWSKP 63
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHM 302
E + +K KC C ++ S + L HM
Sbjct: 64 RKRSLLEMEG-------KEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 56.7 bits (136), Expect = 2e-10
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINT--HTGVKPHKCKYCESRFTTSGELVRHV 232
+ + +C C + T+ L H+N H H+ + + +
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 233 RY--KHTHEKPHKCSICDYASVELSKMRNHM--RSHTGERPYQ 271
K +K KC C ++ L + HM H +
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 49.0 bits (116), Expect = 8e-08
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQ 295
T +C C A L ++ HM TG + + ++ +
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYR-------DDNHETDNNNPKRWSKPRK 65
Query: 296 RHLESHMLIHTDQKPYLCDHCDQ 318
R L QK C +C
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGH 88
Score = 43.2 bits (101), Expect = 9e-06
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 159 CNYCNYTSPKRYLLARHLKS--HSEERPHKCSVCERGFKTI---ASLQNHINTHTGVKPH 213
C C+ L H+ H + H+ + SL K
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 214 KCKYCESRFTTSGELVRH-VRYKHTHEKPHKCS 245
KC YC F + +L H ++ KH + S
Sbjct: 82 KCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114
Score = 27.4 bits (60), Expect = 3.2
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 293 SSQRHLESHMLIHTDQKPYLCDHCDQ 318
SS + + I T + C C
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSA 27
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 59.6 bits (145), Expect = 3e-12
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 202 NHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP C + C RF+ S EL RH R H+ KP S
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPS 46
Score = 47.3 bits (113), Expect = 7e-08
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 173 ARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P C+ C F L H +H+GVKP
Sbjct: 1 GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 42.3 bits (100), Expect = 4e-06
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCD 314
+ S TGE+P+ C + G C ++ S + L H H+ KP
Sbjct: 2 SSGSSGTGEKPFA--C-TWPG--CGWR----FSRSDE--LSRHRRSHSGVKPSGPS 46
Score = 28.4 bits (64), Expect = 0.36
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 172 LARHLKSHSEERPHKCS 188
L+RH +SHS +P S
Sbjct: 30 LSRHRRSHSGVKPSGPS 46
Score = 25.3 bits (56), Expect = 5.4
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 300 SHMLIHTDQKPYLCDH 315
S T +KP+ C
Sbjct: 2 SSGSSGTGEKPFACTW 17
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 57.5 bits (140), Expect = 2e-11
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
R C VC R F L+ H +HT KP+ C C FT L+RH + H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 51.3 bits (124), Expect = 3e-09
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHM-RSHTGE 267
+ C+ C F L RH R HT+EKP+ C +C+ A + H + H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 44.0 bits (105), Expect = 1e-06
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 14/68 (20%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLE 299
+ C +C A ++ H RSHT E+PY C LC A + + L
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPY-------------PCGLCNRAFTRRDLLI 47
Query: 300 SHML-IHT 306
H IH+
Sbjct: 48 RHAQKIHS 55
Score = 39.0 bits (92), Expect = 8e-05
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHIN-THTG 209
L RH +SH+ E+P+ C +C R F L H H+G
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 36.7 bits (86), Expect = 6e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 281 KCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCD 317
+ + CE+C A + Q HL+ H HT++KPY C C+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCN 37
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 56.0 bits (136), Expect = 7e-11
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHI-NTHTGVKPHKCKYCESRFTT 224
S S +P+ C C +GF L HI HT +PHKC+ S ++
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 55.3 bits (134), Expect = 1e-10
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSIC 247
+ ++ + KP+ C+ C F+ L H++ HT E+PHKC +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 43.7 bits (104), Expect = 1e-06
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 14/59 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHM-LIHTDQKPYLCDHC 316
+ S + +PY C+ C S HL H+ +HT ++P+ C
Sbjct: 2 SSGSSGSVGKPY-------------ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 41.8 bits (99), Expect = 8e-06
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRS-HTGERPYQLHCKSHEGEKCWKCELCPYASSS 294
+ KP+ C C + H++ HT ERP+ KC++ SS
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH-------------KCQVWVSGPSS 53
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 54.5 bits (132), Expect = 2e-10
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP++C C F + L+RH RY HT EKP S
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHI-NTHTGVKPHKC 215
S + ++P++C C + F SL H HTG KP
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 14/56 (25%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHM-LIHTDQKPYLC 313
+ S TG++PY +C C A L H HT +KP
Sbjct: 2 SSGSSGTGKKPY-------------ECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 39.1 bits (92), Expect = 5e-05
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRS-HTGERPYQ 271
T +KP++C C A ++ + + H R HTGE+P
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSG 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGKKPYECIEC 18
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 1e-09
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP +CK C F+ S L +H+R H P S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P +C C F SL H+ +H P
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 44.5 bits (106), Expect = 6e-07
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHC 274
T EKP +C C + H+RSH P
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 41.8 bits (99), Expect = 5e-06
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+P+ +C+ C S L H+ H P
Sbjct: 3 SGSSGTGEKPF-------------QCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 26.8 bits (60), Expect = 1.2
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KP+ C C
Sbjct: 2 SSGSSGTGEKPFQCKEC 18
Score = 26.0 bits (58), Expect = 2.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 172 LARHLKSHSEERPHKCS 188
L +HL+SH P S
Sbjct: 28 LFKHLRSHERTDPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 1e-09
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP+KC C FT L H + HT E+ S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGERHSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KCS C + F + L+ H HTG +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KCS C + S++R H + HTGER
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSG 42
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S TGE+PY KC C + + + L H HT ++
Sbjct: 2 SSGSSGTGEKPY-------------KCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 27.9 bits (63), Expect = 0.58
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 300 SHMLIHTDQKPYLCDHCD 317
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYKCSDCG 19
Score = 24.4 bits (54), Expect = 9.8
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C+ C + + L H K H+ ER S
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 51.8 bits (125), Expect = 2e-09
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ GV P+KC CE F+ L+ H R HT EKP S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + P+KCS CE+ F L H HT KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 44.8 bits (107), Expect = 5e-07
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
P+KCS C+ + ++ H R HT E+P
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSG 42
Score = 42.1 bits (100), Expect = 5e-06
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S G PY KC C + S + L H +HT +KP
Sbjct: 3 SGSSGAGVNPY-------------KCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 300 SHMLIHTDQKPYLCDHCD 317
S PY C C+
Sbjct: 2 SSGSSGAGVNPYKCSQCE 19
Score = 24.8 bits (55), Expect = 7.5
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C+ C + + L H + H+ E+P S
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-09
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP+ C C FT L++H + HT +KP S
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HTKQKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TGE+PY C C A + + +L H IHT QKP
Sbjct: 2 SSGSSGTGEKPY-------------ICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 44.0 bits (105), Expect = 9e-07
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+ C+ C + F ++L H HT KP
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 41.7 bits (99), Expect = 6e-06
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+ C+ C A S + H + HT ++P
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSG 42
Score = 28.2 bits (64), Expect = 0.37
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY+C C
Sbjct: 2 SSGSSGTGEKPYICAEC 18
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 51.7 bits (125), Expect = 2e-09
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
EKP+ C IC L +++H+R HTG P
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPH 242
+ G KP+ C+ C +RF L H+R HT P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HTGSGPS 40
Score = 46.7 bits (112), Expect = 9e-08
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 213
S E+P+ C +C F+ + +L++H+ HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 45.6 bits (109), Expect = 2e-07
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPY 311
S GE+PY CE+C + L+SH+ IHT P
Sbjct: 2 SSGSSGGEKPY-------------PCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 26.3 bits (59), Expect = 1.8
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
+KPY C+ C
Sbjct: 1 GSSGSSGGEKPYPCEIC 17
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ G K KC+ C+ F+ + L H H EKP S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S E+ KC C+ F +SL+ H N H G KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 46.8 bits (112), Expect = 9e-08
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
EK KC CD + S +R H H GE+P
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSG 42
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S GE+ + KC C S L H +H +KP
Sbjct: 3 SGSSGMGEKTW-------------KCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 300 SHMLIHTDQKPYLCDHCD 317
S +K + C CD
Sbjct: 2 SSGSSGMGEKTWKCRECD 19
Score = 24.4 bits (54), Expect = 8.0
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C C+ + L H H E+P S
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.9 bits (123), Expect = 3e-09
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP +C C+ F T L+ H R HT EKP S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P +CS C++ F T ++L H THTG KP
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP +CS C A S + H R+HTGE+P
Sbjct: 2 SSGS-SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSG 42
Score = 41.7 bits (99), Expect = 7e-06
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S TGE+P+ +C C A +++ +L H HT +KP
Sbjct: 2 SSGSSGTGEKPF-------------ECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KP+ C C
Sbjct: 2 SSGSSGTGEKPFECSEC 18
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ + K H+C C FT L +H R HT EKP S
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S + H+C C RGF + L H HTG KP
Sbjct: 1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
+ K H+C C S + H R HTGE+P
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPS 41
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S + + + +C C + + HL H IHT +KP
Sbjct: 2 SSGSSGSSTKSH-------------QCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 2.8
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + K + C C
Sbjct: 2 SSGSSGSSTKSHQCHEC 18
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 5e-09
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP+KC C FT L H + HT E+ S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGERHSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KCS C + F + L H +HTG +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KCS C A S + H +SHTGER
Sbjct: 2 SSGS-SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSG 42
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S TGE+PY KC C A + + L H HT ++
Sbjct: 2 SSGSSGTGEKPY-------------KCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 26.3 bits (59), Expect = 2.3
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYKCSDC 18
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 50.2 bits (121), Expect = 5e-09
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
EKP+KC C V+++ +R H+ HTG P
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 49.1 bits (118), Expect = 2e-08
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPY 311
S GE+PY KCE C HL +H+LIHT P
Sbjct: 2 SSGSSGGEKPY-------------KCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 47.9 bits (115), Expect = 3e-08
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPH 242
+ G KP+KC+ C +RF L HV HT P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSGPS 40
Score = 44.8 bits (107), Expect = 4e-07
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 213
S E+P+KC C F +A L+ H+ HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 27.1 bits (61), Expect = 0.98
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 301 HMLIHTDQKPYLCDHC 316
+KPY C+ C
Sbjct: 2 SSGSSGGEKPYKCETC 17
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 6e-09
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP KC C F L RH HT EKP S
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPS 44
Score = 45.9 bits (110), Expect = 2e-07
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCD 314
+ S TGE+P+ KC++C + + L H ++HT +KP
Sbjct: 2 SSGSSGTGEKPF-------------KCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P KC +C + F + L H HT KP
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 44.0 bits (105), Expect = 9e-07
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP KC IC + S++ H HT E+P
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 27.8 bits (63), Expect = 0.57
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KP+ CD C
Sbjct: 2 SSGSSGTGEKPFKCDIC 18
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 50.2 bits (121), Expect = 6e-09
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP+KC+ C F +L H HT EKP S
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 2e-07
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S TGE+PY KCE C +R L +H ++HT +KP
Sbjct: 2 SSGSSGTGEKPY-------------KCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC C +GF L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC C + + H HTGE+P
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSG 42
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCEEC 18
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 7e-09
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG K + CK C F+ + L++H R H+ EKP S
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HSGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S TGE+ Y C+ C + S L H +H+ +KP
Sbjct: 2 SSGSSGTGEKLY-------------NCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+ + C C + F L H H+G KP
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EK + C C + + H R H+GE+P
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSG 42
Score = 27.1 bits (61), Expect = 1.1
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +K Y C C
Sbjct: 2 SSGSSGTGEKLYNCKEC 18
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 7e-09
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ +G KP KC+ C RFT + +L H R HT EKP S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 7e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P KC C + F + L +H HTG KP
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 7e-07
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S +GE+P+ KCE C + L SH +HT +KP
Sbjct: 2 SSGSSGSGEKPF-------------KCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ EKP KC C + S++ +H R HTGE+P
Sbjct: 2 SSGSS-GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KP+ C+ C
Sbjct: 2 SSGSSGSGEKPFKCEEC 18
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 8e-09
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ G KP++C C F+ S L +H HT EKP S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREKPSGPS 44
Score = 44.8 bits (107), Expect = 4e-07
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S E+P++CS C + F L H THT KP
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S GE+PY +C C + S L H + HT +KP
Sbjct: 3 SGSSGEGEKPY-------------QCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
EKP++CS C + ++ H +HT E+P
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSG 42
Score = 26.0 bits (58), Expect = 2.6
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S +KPY C C
Sbjct: 2 SSGSSGEGEKPYQCSEC 18
Score = 25.6 bits (57), Expect = 3.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C+ C + Y L +H +H+ E+P S
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 49.8 bits (120), Expect = 8e-09
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TGVKP+ C C F+ +L+ H R HT KP S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + +P+ CS C + F + L H +HTGVKP
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T KP+ CS C S++ H RSHTG +P
Sbjct: 2 SSGS-SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSG 42
Score = 41.4 bits (98), Expect = 9e-06
Identities = 14/55 (25%), Positives = 17/55 (30%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S TG +PY C C S + L H HT KP
Sbjct: 2 SSGSSGTGVKPY-------------GCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 25.6 bits (57), Expect = 3.4
Identities = 7/17 (41%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T KPY C C
Sbjct: 2 SSGSSGTGVKPYGCSQC 18
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 8e-09
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG P C C FT L+ H + HT E+P S
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPS 44
Score = 45.2 bits (108), Expect = 4e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E P CS C + F +L H HTG +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 43.6 bits (104), Expect = 1e-06
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T E P CS C + + H + HTGERP
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSG 42
Score = 42.5 bits (101), Expect = 3e-06
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S TGE P+ C C + + +L H IHT ++P
Sbjct: 2 SSGSSGTGENPF-------------ICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 26.3 bits (59), Expect = 1.8
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T + P++C C
Sbjct: 2 SSGSSGTGENPFICSEC 18
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 8e-09
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG +P+ C C FT L++H + HT EKP S
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 1e-07
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + ERP+ C+VC + F ++L H HTG KP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 8e-07
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGERPY C +C A + + +L H IHT +KP
Sbjct: 3 SGSSGTGERPY-------------ICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 43.2 bits (103), Expect = 2e-06
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T E+P+ C++C A + S + H + HTGE+P
Sbjct: 2 SSGS-SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T ++PY+C C
Sbjct: 2 SSGSSGTGERPYICTVC 18
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.9 bits (120), Expect = 8e-09
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP KC C F +L+ H R H +K S
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P KC+ C + F + L H TH K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 44.9 bits (107), Expect = 5e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP KC+ C A S++ H R+H ++
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSG 42
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/54 (25%), Positives = 16/54 (29%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+P KC C A + L H H D K
Sbjct: 3 SGSSGTGEKPC-------------KCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 25.2 bits (56), Expect = 4.9
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KP C C
Sbjct: 2 SSGSSGTGEKPCKCTEC 18
Score = 24.8 bits (55), Expect = 6.5
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C C + L H ++H +++ S
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 9e-09
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ +G +P+ C C F L+ H++ H EK S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKSSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S ERP+ C+ C + F + L H+ H K
Sbjct: 1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/54 (24%), Positives = 16/54 (29%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S +GERPY C C HL H+ H +K
Sbjct: 3 SGSSGSGERPY-------------GCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ E+P+ C+ C S + H++ H E+
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSG 42
Score = 28.3 bits (64), Expect = 0.36
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
CN C + L HLK H E+ S
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 27.5 bits (62), Expect = 0.72
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + ++PY C+ C
Sbjct: 2 SSGSSGSGERPYGCNEC 18
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 9e-09
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP++C C FT L H + HT EKP S
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P++C+ C + F ++L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 7e-07
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+PY +C C A + + +L +H IHT +KP
Sbjct: 3 SGSSGTGEKPY-------------RCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP++C+ C A + S + H + HTGE+P
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYRCAEC 18
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 49.4 bits (119), Expect = 1e-08
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP KC C F+ L H + HT EKP S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 2e-07
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TGE+P+ KC C S + L H +HT +KP
Sbjct: 2 SSGSSGTGEKPF-------------KCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P KC C +GF ++L H HTG KP
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP KC C S + H + HTGE+P
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSG 42
Score = 26.3 bits (59), Expect = 1.8
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KP+ C C
Sbjct: 2 SSGSSGTGEKPFKCVEC 18
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ G KP+ C C F++ L+ H+R H+ EKP S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+ CS C + F + + L H+ TH+G KP
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 44.5 bits (106), Expect = 7e-07
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S GE+PY C C A SS+ +L HM H+ +KP
Sbjct: 2 SSGSSGAGEKPY-------------GCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
EKP+ CS C A S + HMR+H+GE+P
Sbjct: 2 SSGS-SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSG 42
Score = 26.0 bits (58), Expect = 2.9
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S +KPY C C
Sbjct: 2 SSGSSGAGEKPYGCSEC 18
Score = 24.4 bits (54), Expect = 8.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C+ C + L H+++HS E+P S
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ + KP+KC+ C + L H R H EK S
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HMGEKTSGPS 44
Score = 48.3 bits (116), Expect = 4e-08
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P+KC C +G+ +L H H G K
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S + E+PY KCE C + + +L+ H +H +K
Sbjct: 2 SSGSSGSVEKPY-------------KCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ EKP+KC C + H R H GE+
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSG 42
Score = 27.5 bits (62), Expect = 0.74
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KPY C+ C
Sbjct: 2 SSGSSGSVEKPYKCEDC 18
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 1e-08
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ G K KC C+ FT S L H R HT EKP S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + ++ KC+ C++ F +SL H HTG KP
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S G++ + KC C + L H IHT +KP
Sbjct: 3 SGSSGAGKKLF-------------KCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+K KC+ C + S + H R HTGE+P
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.4
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S +K + C+ C
Sbjct: 2 SSGSSGAGKKLFKCNEC 18
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 1e-08
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+KC+ C + + L H + HT E+P S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC C +G+ + +L H HTG +P
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 44.4 bits (106), Expect = 6e-07
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY KCE C +S+ +L+ H +HT ++P
Sbjct: 3 SGSSGTGEKPY-------------KCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC C + H + HTGERP
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSG 42
Score = 26.7 bits (60), Expect = 1.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCEKC 18
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ +G KP+KC C + +L H R HT EK S
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P+KC C +G+K L H HTG K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 44.8 bits (107), Expect = 4e-07
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCD 314
+ S +GE+PY KC C + L+ H +HT +K
Sbjct: 2 SSGSSGSGEKPY-------------KCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ EKP+KC C + H R HTGE+
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSG 42
Score = 27.1 bits (61), Expect = 1.1
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KPY C C
Sbjct: 2 SSGSSGSGEKPYKCVEC 18
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ +G KP KC+ C F T+ + H R H+ EKP S
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P KC C +GF T + +H +H+G KP
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHC 274
+ EKP KC C S+ +H RSH+GE+P
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 1e-06
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCD 314
+ S +GE+P+ KCE C + SH H+ +KP
Sbjct: 2 SSGSSGSGEKPF-------------KCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 26.4 bits (59), Expect = 2.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KP+ C+ C
Sbjct: 2 SSGSSGSGEKPFKCEEC 18
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P++C+ C + F + L H TH GV
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 46.8 bits (112), Expect = 9e-08
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKC 244
+ ++ +G KP++C C F L+ H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ EKP++C+ C A + S + H R+H G
Sbjct: 2 SSGS-SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS 42
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S +GE+PY +C C A + L H H
Sbjct: 2 SSGSSGSGEKPY-------------ECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KPY C+ C
Sbjct: 2 SSGSSGSGEKPYECNEC 18
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ +G KP++CK C F G L +H R HT E+ S
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGERSSGPS 44
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 216
S S ++P++C C + F I L H HTG +
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKS 276
+ +KP++C C +++ + H R HTGER S
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSG--PSS 45
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S +G++PY +C+ C HL H +HT ++
Sbjct: 3 SGSSGSGKKPY-------------ECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 26.0 bits (58), Expect = 2.5
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KPY C C
Sbjct: 2 SSGSSGSGKKPYECKEC 18
Score = 25.2 bits (56), Expect = 5.7
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C C T + L +H + H+ ER S
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 1e-08
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ +G KP KCK C F + L H+R HT EKP S
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P KC C + F+ L +H+ HTG KP
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 6e-07
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S +GE+P+ KC+ C A HL SH+ IHT +KP
Sbjct: 3 SGSSGSGEKPF-------------KCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHC 274
+ EKP KC C A + + +H+R HTGE+P
Sbjct: 2 SSGSS-GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 27.1 bits (61), Expect = 0.93
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KP+ C C
Sbjct: 2 SSGSSGSGEKPFKCKEC 18
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 49.7 bits (118), Expect = 1e-08
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 211
++C C K +L +H+++H++ RP+ C+ C FKT +L H+ + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 47.0 bits (111), Expect = 1e-07
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 213 HKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+ C+ C R L +H+R HT +P+ C+ C+++ + HM+S +
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 45.5 bits (107), Expect = 4e-07
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 185 HKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
+ C C K + L+ HI THT V+P+ C YC F T G L +H++ H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSK 56
Score = 44.3 bits (104), Expect = 9e-07
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 242 HKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESH 301
+ C C + S ++ H+R+HT RPY C C ++ ++ +L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPY-------------HCTYCNFSFKTKGNLTKH 48
Query: 302 MLIHTDQK 309
M K
Sbjct: 49 MKSKAHSK 56
Score = 38.2 bits (88), Expect = 2e-04
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 284 KCELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
CE C L+ H+ HTD +PY C +C+
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNF 37
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 1e-08
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ +G KP+ C YC F S ELVRH R HT EKP S
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 4e-07
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P+ C C + F A L H HTG KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S +GE+PY C+ C A L H IHT +KP
Sbjct: 3 SGSSGSGEKPY-------------VCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ EKP+ C C A +++ H R HTGE+P
Sbjct: 2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.99
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KPY+CD+C
Sbjct: 2 SSGSSGSGEKPYVCDYC 18
Score = 25.6 bits (57), Expect = 3.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C+YC L RH + H+ E+P S
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 49.1 bits (118), Expect = 1e-08
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP +C +C F G LV H R HT EK S
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEKSGPSS 44
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S TG++P+ +C C + ++ +L +H IHT +K
Sbjct: 2 SSGSSGTGQKPF-------------ECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T +KP +C+ C + + H R HTGE+
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGP 42
Score = 42.1 bits (100), Expect = 5e-06
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + ++P +C+ C + F+ +L H HTG K
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 28.7 bits (65), Expect = 0.29
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T QKP+ C HC
Sbjct: 2 SSGSSGTGQKPFECTHC 18
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 49.0 bits (118), Expect = 2e-08
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP +C C F+ S +L H R HT EKP S
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI-HTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 6e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P +C+ C + F + L H HTG KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 9e-07
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+P+ +C C + S L +H IHT +KP
Sbjct: 3 SGSSGTGEKPF-------------ECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 43.6 bits (104), Expect = 1e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP +C+ C + S++ H R HTGE+P
Sbjct: 2 SSGSS-GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSG 42
Score = 25.9 bits (58), Expect = 2.6
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KP+ C C
Sbjct: 2 SSGSSGTGEKPFECAEC 18
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 2e-08
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+KC+ C F S LV+H H+ E+P S
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HSGERPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC VC + F+ + L H + H+G +P
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY KC++C A HL H +H+ ++P
Sbjct: 3 SGSSGTGEKPY-------------KCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC +C A S + H H+GERP
Sbjct: 2 SSGSS-GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSG 42
Score = 26.3 bits (59), Expect = 2.0
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYKCQVC 18
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 2e-08
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP+KC C FT + LVRH HT EKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 1e-07
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TGE+PY KC C + HL H IHT +KP
Sbjct: 2 SSGSSGTGEKPY-------------KCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 44.8 bits (107), Expect = 6e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC+ C + F + L H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 7e-06
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC+ C + S + H HTGE+P
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 2e-08
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP++C C F +L H R HT E P S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGPS 44
Score = 44.5 bits (106), Expect = 6e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P++CS C + F + L H HTG P
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP++CS C + ++ S++ H R HTGE P
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSG 42
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+PY +C C + + L H IHT + P
Sbjct: 3 SGSSGTGEKPY-------------ECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 26.3 bits (59), Expect = 1.7
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYECSDC 18
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 2e-08
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP+KC C F+ + +L RH R HT EKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 9e-08
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TGE+PY KC C A S L H IHT +KP
Sbjct: 2 SSGSSGTGEKPY-------------KCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 8e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC+ C + F + L H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC+ C A + SK+ H R HTGE+P
Sbjct: 2 SSGSS-GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 24.4 bits (54), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
CN C + LARH + H+ E+P S
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 2e-08
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG +PHKC C F S L++H R HT EKP S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 9e-08
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + ERPHKC+ C + F A L H HTG KP
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TGERP+ KC C + HL H IHT +KP
Sbjct: 2 SSGSSGTGERPH-------------KCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 4e-06
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T E+PHKC+ C + ++ + + H R HTGE+P
Sbjct: 2 SSGS-SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSG 42
Score = 26.3 bits (59), Expect = 2.0
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T ++P+ C+ C
Sbjct: 2 SSGSSGTGERPHKCNEC 18
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 2e-08
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KPH+C+ C F+ + +L+ H R HT E P S
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HTGENPSGPS 44
Score = 44.4 bits (106), Expect = 6e-07
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+P+ +C C + S L H IHT + P
Sbjct: 3 SGSSGTGEKPH-------------ECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 44.4 bits (106), Expect = 7e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+PH+C C + F + L H HTG P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKPH+C C + S++ H R HTGE P
Sbjct: 2 SSGSS-GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSG 42
Score = 26.3 bits (59), Expect = 1.9
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KP+ C C
Sbjct: 2 SSGSSGTGEKPHECREC 18
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 2e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG P++C C F+ +L+ H R H EKP S
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGPS 44
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E P++C C + F L +H TH G KP
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 44.4 bits (106), Expect = 6e-07
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE PY +C C A S + L SH H +KP
Sbjct: 3 SGSSGTGENPY-------------ECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T E P++C C A ++ +H R+H GE+P
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSG 42
Score = 25.5 bits (57), Expect = 3.9
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T + PY C C
Sbjct: 2 SSGSSGTGENPYECHEC 18
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ G + H+C C F + ++H R HT EKP S
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S ER H+CS C + F ++ H HTG KP
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
E+ H+CS C ++ S H R HTGE+P
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPS 41
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S GER + +C C + H IHT +KP
Sbjct: 2 SSGSSGHGERGH-------------RCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 2.5
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S ++ + C C
Sbjct: 2 SSGSSGHGERGHRCSDC 18
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 2e-08
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ +G KP+KC C F L H R HT +P S
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGYRPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P+KCS C + F L H HTG +P
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 44.8 bits (107), Expect = 4e-07
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S +GE+PY KC C A HL H IHT +P
Sbjct: 3 SGSSGSGEKPY-------------KCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ EKP+KCS C A + + H R HTG RP
Sbjct: 2 SSGSS-GSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSG 42
Score = 26.3 bits (59), Expect = 2.1
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KPY C C
Sbjct: 2 SSGSSGSGEKPYKCSEC 18
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP KC C + L +H R HT EKP S
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P KC C + + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+P+ KC C + + + HL H +HT +KP
Sbjct: 3 SGSSGTGEKPF-------------KCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 41.7 bits (99), Expect = 6e-06
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP KC C + + + H R HTGE+P
Sbjct: 2 SSGSS-GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.3
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KP+ C C
Sbjct: 2 SSGSSGTGEKPFKCGEC 18
Score = 25.2 bits (56), Expect = 5.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C C + +R L +H + H+ E+P S
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+ C+ C F +L H R HT EKP S
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 6e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+ C C + F + LQ H HTG KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY CE C A L+ H IHT +KP
Sbjct: 3 SGSSGTGEKPY-------------NCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+ C C A + S+++ H R HTGE+P
Sbjct: 2 SSGSS-GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 1.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYNCEEC 18
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ +G KP +C+ C RFT + L H R HT EKP S
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P +C C + F + L +H HTG KP
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S +GE+P+ +CE C + HL SH +HT +KP
Sbjct: 3 SGSSGSGEKPF-------------QCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ EKP +C C + S + +H R HTGE+P
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KP+ C+ C
Sbjct: 2 SSGSSGSGEKPFQCEEC 18
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 2e-08
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ +G KP+KC C FT + L H R HT EKP S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P+KC+ C + F + L NH HTG KP
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S +GE+PY KC C + HL +H IHT +KP
Sbjct: 2 SSGSSGSGEKPY-------------KCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ EKP+KC+ C + S + NH R HTGE+P
Sbjct: 2 SSGSS-GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSG 42
Score = 26.3 bits (59), Expect = 1.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KPY C+ C
Sbjct: 2 SSGSSGSGEKPYKCNEC 18
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TGE+PY C +C A HL H+ +HT +
Sbjct: 2 SSGSSGTGEKPY-------------SCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP+ C C F S L +H+R HT E S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HTQETLSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 216
S + E+P+ C+VC + F A L H+ HT
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+ C++C A V + + H+R HT E
Sbjct: 7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSG 42
Score = 28.2 bits (64), Expect = 0.43
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYSCNVC 18
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.2 bits (116), Expect = 3e-08
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+KC C F + L RH HT EKP S
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 2e-07
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC C + F+ + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 6e-07
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY KC C HL H LIHT +KP
Sbjct: 3 SGSSGTGEKPY-------------KCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC C S + H HTGE+P
Sbjct: 2 SSGSS-GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.5
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYKCHEC 18
Score = 24.4 bits (54), Expect = 8.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C+ C + LARH H+ E+P S
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ G K +KC C F+ S L H R HT EKP S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S E+ +KC VC + F + LQ H HTG KP
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S GE+ Y KC++C S HL++H +HT +KP
Sbjct: 3 SGSSGMGEKCY-------------KCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
EK +KC +C + S ++ H R HTGE+P
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
Score = 27.1 bits (61), Expect = 1.0
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S +K Y CD C
Sbjct: 2 SSGSSGMGEKCYKCDVC 18
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP++C C F+ + +L RH R HT EKP S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TG +PY +C C A S L H +HT +KP
Sbjct: 3 SGSSGTGGKPY-------------QCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + +P++C+ C + F + L H HTG KP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T KP++C+ C A + SK+ H R HTGE+P
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSG 42
Score = 26.3 bits (59), Expect = 1.7
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T KPY C+ C
Sbjct: 2 SSGSSGTGGKPYQCNEC 18
Score = 25.2 bits (56), Expect = 4.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
CN C + LARH + H+ E+P S
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+G KP C CE F++ L+ H + H EKP S
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGPS 42
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ EKP CS C+ A S + H ++H E+P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSG 40
Score = 44.8 bits (107), Expect = 5e-07
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 177 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S E+P CS CE+ F + + L H TH KP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 262 RSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+GE+P+ C C A SS+ +L H H ++KP
Sbjct: 3 SGSSGEKPF-------------GCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.6 bits (57), Expect = 3.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
C+ C + L H ++H+EE+P S
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+KC C FT + L RH R HT KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGGKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+PY KC C + HL H +HT KP
Sbjct: 3 SGSSGTGEKPY-------------KCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 44.0 bits (105), Expect = 1e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC+ C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 41.4 bits (98), Expect = 9e-06
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC+ C + S + H R HTG +P
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSG 42
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 24.8 bits (55), Expect = 7.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
CN C + LARH + H+ +P S
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP++C C F L +H R HT EKP S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P++C C + F A+L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TGE+PY +C C A + + +L H IHT +KP
Sbjct: 2 SSGSSGTGEKPY-------------RCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP++C C A + + + H R HTGE+P
Sbjct: 2 SSGS-SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.4
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYRCGEC 18
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 216
S + +RP++C C + FKT +SL H +HTG KP
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 5e-08
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG +P++C C F T L+ H R HT EKP S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T ++P++C C A S + H RSHTGE+P
Sbjct: 2 SSGS-SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSG 42
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TG+RPY +C C A ++ L H HT +KP
Sbjct: 3 SGSSGTGQRPY-------------ECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 2.5
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T Q+PY C C
Sbjct: 2 SSGSSGTGQRPYECIEC 18
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+KC C FT + L H R HT KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HTGVKPSGPS 44
Score = 44.8 bits (107), Expect = 6e-07
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC+ C + F + L NH HTGVKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY KC C + HL +H IHT KP
Sbjct: 3 SGSSGTGEKPY-------------KCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC+ C + S + NH R HTG +P
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSG 42
Score = 26.7 bits (60), Expect = 1.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 25.2 bits (56), Expect = 5.8
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
CN C + LA H + H+ +P S
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP++CK C FT L +H + HT EKP S
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 216
S + E+P++C VC + F A L H THTG KP
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY +C++C A + + HL H HT +KP
Sbjct: 3 SGSSGTGEKPY-------------ECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 6e-06
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP++C +C A + + + H ++HTGE+P
Sbjct: 2 SSGS-SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSG 42
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYECKVC 18
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG K +KC C F+ + +L +H + HT EKP S
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+ Y KC C S L H IHT +KP
Sbjct: 3 SGSSGTGEKRY-------------KCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+ +KC+ C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 8e-06
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EK +KC+ C S++ H + HTGE+P
Sbjct: 2 SSGSS-GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.6
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +K Y C+ C
Sbjct: 2 SSGSSGTGEKRYKCNEC 18
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + +P+ C+ C + F +SL H HTG KP
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TGVKP+ C C F+ L H HT EKP S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TG +PY C C A S L +H +IHT +KP
Sbjct: 2 SSGSSGTGVKPY-------------MCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 3e-06
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T KP+ C+ C A S + H HTGE+P
Sbjct: 2 SSGS-SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSG 42
Score = 27.5 bits (62), Expect = 0.86
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T KPY+C+ C
Sbjct: 2 SSGSSGTGVKPYMCNEC 18
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP++CK C F+ + L++H R HT EKP S
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 7e-07
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+PY +C+ C A S HL H +HT +KP
Sbjct: 3 SGSSGTGEKPY-------------ECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 43.6 bits (104), Expect = 1e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P++C C + F L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP++C C A + + + H R HTGE+P
Sbjct: 2 SSGSS-GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.6
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYECKEC 18
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+KC C FT + L RH HT EKP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+PY KC C + HL H IHT +KP
Sbjct: 3 SGSSGTGEKPY-------------KCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 43.6 bits (104), Expect = 1e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC+ C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC+ C + S + H HTGE+P
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.93
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 24.4 bits (54), Expect = 8.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
CN C + LARH H+ E+P S
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+KC C F L H HT EKP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC+ C + F+ ++L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 5e-07
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY KC C A + +L +H +IHT +KP
Sbjct: 3 SGSSGTGEKPY-------------KCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC+ C A S + H HTGE+P
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSG 42
Score = 28.6 bits (65), Expect = 0.31
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.0 bits (115), Expect = 4e-08
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP+KC C F + +H R HT ++P S
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HTGQRPSGPS 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TGE+PY KC C A H +HT Q+P
Sbjct: 2 SSGSSGTGEKPY-------------KCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 44.5 bits (106), Expect = 7e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC C + F +S H HTG +P
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 43.0 bits (102), Expect = 3e-06
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC C A + S H R HTG+RP
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSG 42
Score = 26.8 bits (60), Expect = 1.3
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYKCMEC 18
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ +G +P KC C F L H+R H+ EK S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HSREKSSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S ERP KC+ C +GF + L H+ H+ K
Sbjct: 1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S +GERP+ KC C + HL H+ +H+ +K
Sbjct: 3 SGSSGSGERPF-------------KCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ E+P KC+ C S + H+R H+ E+
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSG 42
Score = 26.0 bits (58), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
CN C +R LA HL+ HS E+ S
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 26.0 bits (58), Expect = 2.8
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + ++P+ C+ C
Sbjct: 2 SSGSSGSGERPFKCNEC 18
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 4e-08
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP C C F+ L +H R HT EKP S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P C C + F L H HTG KP
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 4e-07
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+P+ C C A S L H IHT +KP
Sbjct: 3 SGSSGTGEKPF-------------DCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 4e-06
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP C C A + + H R HTGE+P
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSG 42
Score = 26.3 bits (59), Expect = 1.8
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KP+ C C
Sbjct: 2 SSGSSGTGEKPFDCIDC 18
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 48.0 bits (115), Expect = 4e-08
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+ CK C F + L++H R H+ EKP S
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEKPSGPS 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 216
S + E+P+ C C + F+ + L H H+G KP
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 42.6 bits (101), Expect = 3e-06
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+ C C + S + H R H+GE+P
Sbjct: 2 SSGSS-GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSG 42
Score = 41.8 bits (99), Expect = 5e-06
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY C+ C + L H +H+ +KP
Sbjct: 3 SGSSGTGEKPY-------------NCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 26.8 bits (60), Expect = 1.3
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYNCKEC 18
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKC 244
+ ++ TG+KP+ C C F + L+ H R HT E
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSS 43
Score = 47.1 bits (113), Expect = 8e-08
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + +P+ C+ C + F++ + L H THTG
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 43.6 bits (104), Expect = 1e-06
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 13/55 (23%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+ S TG +PY C C A S+ +L H HT +
Sbjct: 2 SSGSSGTGMKPY-------------VCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 43.2 bits (103), Expect = 2e-06
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T KP+ C+ C A S + H R+HTGE
Sbjct: 2 SSGS-SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPS 42
Score = 25.9 bits (58), Expect = 2.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T KPY+C+ C
Sbjct: 2 SSGSSGTGMKPYVCNEC 18
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 5e-08
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP++C C FT +L H + HT EKP S
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 5e-07
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 216
S + E+P++CS+C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 6e-07
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+PY +C +C + + + L H IHT +KP
Sbjct: 3 SGSSGTGEKPY-------------ECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP++CSIC + + S++ H + HTGE+P
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYECSIC 18
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG + ++C C F L+ H R HT EKP S
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 2e-07
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + ER ++CS C + F ++L H HTG KP
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 1e-06
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGER Y +C C A + + L H IHT +KP
Sbjct: 3 SGSSGTGERHY-------------ECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T E+ ++CS C A S + H R HTGE+P
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSG 42
Score = 25.5 bits (57), Expect = 4.3
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T ++ Y C C
Sbjct: 2 SSGSSGTGERHYECSEC 18
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 47.6 bits (113), Expect = 5e-08
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 177 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYC 218
S + C +C + F+ + L H +H+G KP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 44.5 bits (105), Expect = 7e-07
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 235 KHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
K C IC ++ + H SH+GE+PY
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 40.7 bits (95), Expect = 2e-05
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 275 KSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHC 316
S K CE+C HL H L H+ +KPY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 40.3 bits (94), Expect = 2e-05
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSIC 247
+ K C+ C F L RH H+ EKP+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
Score = 35.7 bits (82), Expect = 0.001
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVC 190
C C Y L RH SHS E+P+
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+KC C F L H R HT EKP S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC VC + F+ +SL H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC +C + S + H R HTGE+P
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSG 42
Score = 42.9 bits (102), Expect = 2e-06
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY KC++C + L H IHT +KP
Sbjct: 3 SGSSGTGEKPY-------------KCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY CD C
Sbjct: 2 SSGSSGTGEKPYKCDVC 18
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+KC C F L H H+ EKP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGPS 44
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC+ C + F+ +SL H TH+G KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC+ C A S + H +H+GE+P
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSG 42
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY KC C A ++ L H H+ +KP
Sbjct: 3 SGSSGTGEKPY-------------KCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG KP+KC C F + L RH R HT EKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 6e-07
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+KC+ C + F+ + L H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TGE+PY KC C +L H IHT +KP
Sbjct: 2 SSGSSGTGEKPY-------------KCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+KC+ C S + H R HTGE+P
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+KC C FT + L RH HT EKP S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TG++PY KC C + HL H IHT +KP
Sbjct: 3 SGSSGTGKKPY-------------KCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 3e-06
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + ++P+KC+ C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T +KP+KC+ C + S + H HTGE+P
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.89
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGKKPYKCNEC 18
Score = 24.8 bits (55), Expect = 6.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCS 188
CN C + LARH H+ E+P S
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP++C C F+ L H R H+ +KP S
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HSGKKPSGPS 44
Score = 45.2 bits (108), Expect = 4e-07
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P++CSVC + F SL H H+G KP
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 44.8 bits (107), Expect = 5e-07
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+PY +C +C A S ++ L H IH+ +KP
Sbjct: 3 SGSSGTGEKPY-------------ECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP++CS+C A + H R H+G++P
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSG 42
Score = 26.7 bits (60), Expect = 1.2
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C C
Sbjct: 2 SSGSSGTGEKPYECSVC 18
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 6e-08
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP+ C C F L RH R HT EKP S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 5e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P+ C+ C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY C C + + HL H IHT +KP
Sbjct: 3 SGSSGTGEKPY-------------ICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 7e-06
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP+ C+ C + ++ S + H R HTGE+P
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
Score = 26.3 bits (59), Expect = 1.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY+C+ C
Sbjct: 2 SSGSSGTGEKPYICNEC 18
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP++C C F+ L H HT +KP S
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HTGKKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 216
S + E+P++C+ C + F +SL H HTG KP
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 45.2 bits (108), Expect = 3e-07
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+PY +C C A S + L +H IHT +KP
Sbjct: 3 SGSSGTGEKPY-------------ECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 41.7 bits (99), Expect = 6e-06
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 230 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP++C+ C A S + H HTG++P
Sbjct: 2 SSGS-SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSG 42
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYECNQC 18
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 7e-08
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG KP++C C F+ L +H R H+ EKP S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HSGEKPSGPS 44
Score = 45.2 bits (108), Expect = 4e-07
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGE+PY +C++C A S L H +H+ +KP
Sbjct: 3 SGSSGTGEKPY-------------ECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 8e-07
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P++C VC + F ASL H H+G KP
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP++C +C A + + H R H+GE+P
Sbjct: 7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSG 42
Score = 27.1 bits (61), Expect = 0.91
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY CD C
Sbjct: 2 SSGSSGTGEKPYECDVC 18
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
+ ++ TG K +C C FT L H + HT EKP S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 9e-07
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
+ S TG + + +C C A + + L H IHT +KP
Sbjct: 2 SSGSSGTGGKHF-------------ECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + + +C+ C + F ++L H HTG KP
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T K +C+ C A S + H + HTGE+P
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSG 42
Score = 25.9 bits (58), Expect = 2.3
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T K + C C
Sbjct: 2 SSGSSGTGGKHFECTEC 18
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 8e-08
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ +G KP+ C C F+ L H R HT EKP S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+P+ C+ C + F + L H THTG KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S +GE+PY C C S + L +H HT +KP
Sbjct: 3 SGSSGSGEKPY-------------GCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ EKP+ C+ C + S + H R+HTGE+P
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSG 42
Score = 25.6 bits (57), Expect = 3.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +KPY C+ C
Sbjct: 2 SSGSSGSGEKPYGCNEC 18
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 47.7 bits (113), Expect = 9e-08
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 198 ASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKM 257
S H G + KC C F L R K C C S + + +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAAL 55
Query: 258 RNHMRSHTGERPY 270
+ +G++
Sbjct: 56 NKDEGNESGKKTS 68
Score = 43.5 bits (102), Expect = 3e-06
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 172 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 231
+ K H +R KCS C F +T + K C+ C L +
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
Query: 232 VRYKHTHEKPH 242
+ +K
Sbjct: 59 EG-NESGKKTS 68
Score = 38.5 bits (89), Expect = 2e-04
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 21/88 (23%)
Query: 224 TSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCW 283
+SG + + H ++ KCS C + + + +
Sbjct: 2 SSGSSGKRQKI-HLGDRSQKCSKC-------GIIFIRRSTLSRRKTPM------------ 41
Query: 284 KCELCPYASSSQRHLESHMLIHTDQKPY 311
CE C S + L + +K
Sbjct: 42 -CEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 29.6 bits (66), Expect = 0.22
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 273 HCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHC 316
K H G++ KC C + +K +C+ C
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKC 45
Score = 25.8 bits (56), Expect = 5.7
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 294 SQRHLESHMLIHTDQKPYLCDHC 316
S IH + C C
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKC 24
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKC 244
++ TG KP++C C+ F T L+ H R HT E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSS 43
Score = 43.6 bits (104), Expect = 1e-06
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E+P++C+ C++ F T ++L H THTG
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 43.2 bits (103), Expect = 2e-06
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE+PY +C C A +++ +L H HT +
Sbjct: 3 SGSSGTGEKPY-------------ECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T EKP++C+ C A S + H R+HTGE
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPS 42
Score = 26.3 bits (59), Expect = 2.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T +KPY C+ C
Sbjct: 2 SSGSSGTGEKPYECNEC 18
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ TG + ++C C F L H R H EKP S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGEKPSGPS 44
Score = 43.7 bits (104), Expect = 1e-06
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 13/56 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
S TGER Y +C C A + L H IH +KP
Sbjct: 3 SGSSGTGERHY-------------ECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + ER ++CS C + F ++L H H G KP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T E+ ++CS C A ++ S + H R H GE+P
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSG 42
Score = 26.3 bits (59), Expect = 2.2
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T ++ Y C C
Sbjct: 2 SSGSSGTGERHYECSEC 18
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 46.4 bits (111), Expect = 1e-07
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 205 NTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKC 244
+ +G P++C C F +L+ H R H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQR-THAGESGPSS 41
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 177 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S E P++CS C + F L +H TH G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 42.1 bits (100), Expect = 4e-06
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
+ E P++CS C A ++ +H R+H GE
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPS 40
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 13/52 (25%)
Query: 262 RSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+GE PY +C C A + + L SH H +
Sbjct: 3 SGSSGENPY-------------ECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.2 bits (108), Expect = 4e-07
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKC 244
++ TG P++C C F+ +LV H + H+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQSGPSS 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S + E P++C C + F L +H TH+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQ 271
T E P++C C ++ +H ++H+G+
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPS 42
Score = 39.0 bits (92), Expect = 5e-05
Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S TGE PY +C C S + L SH H+ Q
Sbjct: 3 SGSSGTGENPY-------------ECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 24.4 bits (54), Expect = 7.9
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S T + PY C C
Sbjct: 2 SSGSSGTGENPYECCEC 18
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.9 bits (107), Expect = 4e-07
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCS 245
++ +G K H C C F L H R H EK S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEKCSGPS 44
Score = 44.5 bits (106), Expect = 7e-07
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S S E+ H C C + F I++L+ H H G K
Sbjct: 1 GSSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 41.4 bits (98), Expect = 8e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
+ EK H C C +S +R H R H GE+
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCS 41
Score = 34.1 bits (79), Expect = 0.003
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 13/55 (23%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCD 314
S +GE+ + C+ C L H +H +K
Sbjct: 3 SGSSGSGEKSH-------------TCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 27.6 bits (62), Expect = 0.63
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S + +K + CD C
Sbjct: 2 SSGSSGSGEKSHTCDEC 18
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 44.1 bits (105), Expect = 9e-07
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPH 242
+ G KP++C C F+ G L+ H+R HT P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPS 40
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
EKP++C C A + + H+R HTG P
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 42.9 bits (102), Expect = 2e-06
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPY 311
S GE+PY +C+ C A S + L H+ +HT P
Sbjct: 2 SSGSSGGEKPY-------------RCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 39.9 bits (94), Expect = 2e-05
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 213
S E+P++C C + F SL HI HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 27.1 bits (61), Expect = 0.90
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 301 HMLIHTDQKPYLCDHC 316
+KPY CD C
Sbjct: 2 SSGSSGGEKPYRCDQC 17
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 44.1 bits (103), Expect = 4e-06
Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYC 218
C CN H + C C F + Q H + K C C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEH-ESKCEYKKLTCLEC 75
Query: 219 ESRFTTSGELVRHVRYKHTHE 239
F +S + RH H
Sbjct: 76 MRTFKSSFSIWRHQVEVHNQN 96
Score = 35.3 bits (80), Expect = 0.004
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 182 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
+ ++C +C ++ +H C YC RF + H K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHES--KCEYKK 69
Query: 242 HKCSICDYASVELSKMRNH 260
C C + H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 30.6 bits (68), Expect = 0.20
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 148 NKKQVVAPAHMCNYCNYTSPKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNH 203
+ +++ A +C YC+ L H +S E + C C R FK+ S+ H
Sbjct: 34 SHERLCRNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 30.6 bits (68), Expect = 0.23
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 209 GVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+ ++C+ C ++ ++ E H R C C + H ++
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 269 PYQLHC 274
L C
Sbjct: 70 LTCLEC 75
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 41.5 bits (98), Expect = 8e-06
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHK 243
+ G P+ C C FT G L H R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQSGPSS 41
Score = 40.7 bits (96), Expect = 1e-05
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
E P+ C C + + + H RS + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 38.8 bits (91), Expect = 6e-05
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHK 214
S E P+ C C + F SL H + + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 36.5 bits (85), Expect = 5e-04
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 13/52 (25%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPY 311
S GE PY C C + + + L H + P
Sbjct: 2 SSGSSGGETPY-------------LCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKC 244
++ T K + C C FT L RH + HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTRKSGPSS 43
Score = 37.2 bits (87), Expect = 3e-04
Identities = 12/54 (22%), Positives = 15/54 (27%), Gaps = 13/54 (24%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
S T + Y C C A + HL H IHT +
Sbjct: 3 SGSSGTDSKSY-------------NCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
T K + C+ C A + + H + HT +
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGP 41
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S ++ + + C+ C + F I L H HT
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 28.7 bits (65), Expect = 0.25
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 300 SHMLIHTDQKPYLCDHC 316
S TD K Y C+ C
Sbjct: 2 SSGSSGTDSKSYNCNEC 18
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 39.9 bits (94), Expect = 2e-05
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 211 KPHKCKY--CESRFTTSGELVRHVRYKHTHEK 240
+P C + C RFT S EL RH R HT EK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK 31
Score = 29.9 bits (68), Expect = 0.087
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 183 RPHKCSV--CERGFKTIASLQNHINTHTGVK 211
RP C+ C + F LQ H THTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 42.1 bits (98), Expect = 2e-05
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 199 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTH---EKPHKCSICDYASVELS 255
++ ++CKYC + HV +H + + C C++ +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 256 KMRNH-MRSHTGERPYQLHCKSHEGE 280
+ H ++ H GE ++L +
Sbjct: 65 ALSEHNLKYHPGEENFKLTMVKRNNQ 90
Score = 40.5 bits (94), Expect = 6e-05
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 174 RHLKSHSEERPHKCSVCERGFKTIASLQNHINT-HTGVK---PHKCKYCESRFTTSGELV 229
+ ++ E ++C C + H+++ H V + C C L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 230 RHVRYKHTHEKPHKCSI 246
H H E+ K ++
Sbjct: 68 EHNLKYHPGEENFKLTM 84
Score = 34.4 bits (78), Expect = 0.008
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 229 VRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRS-HTGERPYQLHCKSHEGEKCWKCEL 287
H + E ++C C + + +L+ H+ S H + C
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVL----------NSSYVCVE 55
Query: 288 CPYASSSQRHLESH 301
C + + L H
Sbjct: 56 CNFLTKRYDALSEH 69
Score = 30.5 bits (68), Expect = 0.20
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 155 PAHMCNYCNYTSPKRYLLARH-LKSHSEERPHKCSVCERGFKTI 197
+++C CN+ + + L+ H LK H E K ++ +R +TI
Sbjct: 49 SSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKRNNQTI 92
Score = 28.2 bits (62), Expect = 1.3
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 273 HCKSHEGEKCWKCELCPYASSSQRHLESHM-LIHTD---QKPYLCDHCD 317
+ ++ + E ++C+ C + + H+ H + Y+C C+
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECN 57
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 39.9 bits (94), Expect = 2e-05
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
+ ++ ++C C + + + H R HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 39.1 bits (92), Expect = 4e-05
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 205 NTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPH 242
+ +G + ++C+ C F G L H R HT P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERI-HTGSGPS 39
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 13/50 (26%)
Query: 262 RSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPY 311
+G+R Y +C+ C + + L H IHT P
Sbjct: 3 SGSSGQRVY-------------ECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 33.7 bits (78), Expect = 0.004
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 177 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 213
S +R ++C C + F+ SL H HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 42.2 bits (98), Expect = 3e-05
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 171 LLARHLKSHSEERPHKCSV----CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSG 226
L H + ++R + V +S + + C C F++S
Sbjct: 29 LKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSV 88
Query: 227 ELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 264
L +H+RY E C +C +H+
Sbjct: 89 SLKQHIRY---TEHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 30.7 bits (68), Expect = 0.28
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 256 KMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDH 315
K H E Y + + + C LC SS L+ H+ +C
Sbjct: 48 KTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPV 105
Query: 316 CDQ 318
C +
Sbjct: 106 CKK 108
Score = 28.7 bits (63), Expect = 1.2
Identities = 16/123 (13%), Positives = 26/123 (21%), Gaps = 20/123 (16%)
Query: 183 RPHK---CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 239
HK V K L + S L R +
Sbjct: 15 SNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL--ASKAI 72
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLE 299
C +C ++ H+R + C +C +S
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTK---------------VCPVCKKEFTSTDSAL 117
Query: 300 SHM 302
H+
Sbjct: 118 DHV 120
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 39.2 bits (92), Expect = 4e-05
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 203 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTH 238
TG+KP +C C+ F+ S L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK---RH 34
Score = 36.2 bits (84), Expect = 5e-04
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 13/46 (28%)
Query: 260 HMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIH 305
R TG +P+Q C C + S HL H H
Sbjct: 2 STRGSTGIKPFQ-------------CPDCDRSFSRSDHLALHRKRH 34
Score = 34.6 bits (80), Expect = 0.002
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 175 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGV 210
+ + +P +C C+R F L H H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 31.2 bits (71), Expect = 0.026
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 231 HVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 264
R T KP +C CD + + H + H
Sbjct: 2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 2.5
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 301 HMLIHTDQKPYLCDHCDQ 318
T KP+ C CD+
Sbjct: 2 STRGSTGIKPFQCPDCDR 19
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 39.1 bits (91), Expect = 5e-05
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 173 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 213
S + E P KCS C+R F L H TH
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 37.1 bits (86), Expect = 3e-04
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERP 269
E P KCS CD + + + H R+H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 36.0 bits (83), Expect = 6e-04
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 202 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPH 242
+ ++ G P KC C+ FT LV+H R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER-THARKSGP 41
Score = 32.1 bits (73), Expect = 0.015
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 273 HCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKP 310
S GE +KC C + + +L H H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 24.8 bits (54), Expect = 7.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 300 SHMLIHTDQKPYLCDHCDQ 318
S + P+ C CD+
Sbjct: 2 SSGSSGAGENPFKCSKCDR 20
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.8 bits (91), Expect = 5e-05
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKC 244
+G KP+ C C+ F+ + LV+H + HT +
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKM-HTVKSGPSS 41
Score = 35.4 bits (82), Expect = 0.001
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
+ EKP+ C+ C + +++ H + HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGP 39
Score = 35.0 bits (81), Expect = 0.002
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 177 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 215
S E+P+ C+ C+ F L H HT
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 31.9 bits (73), Expect = 0.021
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 13/52 (25%)
Query: 262 RSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLC 313
+GE+PY C C S L H +HT +
Sbjct: 3 SGSSGEKPY-------------SCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 37.9 bits (87), Expect = 1e-04
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 237 THEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+ KP+KC C YAS + + H+R HTGE+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.3 bits (62), Expect = 0.40
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 281 KCWKCELCPYASSSQRHLESHMLIHTDQK 309
K +KC C YAS+ + +L H+ HT +K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.7 bits (58), Expect = 1.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 211
S S +P+KC C A+L H+ HTG K
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.6 bits (55), Expect = 2.9
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
KP+KC C L H+R KHT EK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLR-KHTGEK 36
Score = 24.4 bits (52), Expect = 7.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEER 183
+ C C+Y S + L HL+ H+ E+
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 42.9 bits (100), Expect = 1e-04
Identities = 17/205 (8%), Positives = 47/205 (22%), Gaps = 27/205 (13%)
Query: 10 DLNSSEYQTVTIVPSEGSTGEVSYVLIVQQNETEPGQISVEQDIN-------PDPEHVEM 62
S+ + + + + + N + + ++ +
Sbjct: 19 STERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDE 78
Query: 63 KKPQPRPKPKPLSKKLTKSEEEDLTVYDFEEVDEVDPIGEEAPSSEEEDLTVYDFEEVDE 122
P + + +++ ++ + D + S+ +
Sbjct: 79 GTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGN 138
Query: 123 VDPIGEEAPSTIEEDVDEKPKLSKLNKKQVVAPAHMCNYCNYTSPKRYLLARHLKSHSEE 182
VD G + + E V + S
Sbjct: 139 VDNEGGSNQKPMSTRIAEATSAIVSKHPARVG--------------------LPPTASSG 178
Query: 183 RPHKCSVCERGFKTIASLQNHINTH 207
++C VC + L H+ +H
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.1 bits (77), Expect = 0.077
Identities = 24/192 (12%), Positives = 50/192 (26%), Gaps = 8/192 (4%)
Query: 50 EQDINPDPEHVEMKKPQPRPK-PKPLSKKLTKSEEEDLTVYDFEEVDEVDPIGEEAPSSE 108
+ + + K ++ T + E+ V +
Sbjct: 17 NDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQRATE--SAELPMK 74
Query: 109 EEDLTVYDFEEVDEVDPIGEEAPSTIE--EDVDEKPKLSKLNKKQVVAPAHMCNYCNYTS 166
D D + D + E + + E E ++ K + +K QV N N S
Sbjct: 75 NNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELS 134
Query: 167 PKRYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSG 226
+ + + T + ++C C + +
Sbjct: 135 RSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPL 194
Query: 227 ELVRHVRYKHTH 238
+L HV +H
Sbjct: 195 DLDAHVA---SH 203
Score = 33.7 bits (76), Expect = 0.11
Identities = 28/213 (13%), Positives = 53/213 (24%), Gaps = 23/213 (10%)
Query: 64 KPQPRPKPKPLSKKLTKSEEEDL--TVYDFEEVDEVDP--IGEEAPSSEEEDLTVYDFEE 119
K PR S K S E + ++ + E S+ E+
Sbjct: 2 KRIPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIAS 61
Query: 120 VDEVDPIGEEAPSTIEEDVDEKPKLSKLNKKQVVAPAHMCNYCNYTSPKRYLLARHLKSH 179
V E +E +K ++ + + A + K
Sbjct: 62 VQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEA----DEATQ-------KQA 110
Query: 180 SEERPHKCSVCERGFKTIASLQN---HINTHTGVKPHKCKYCESRFTTSGELVRHVRY-- 234
+ K V + + + G K TS + +H
Sbjct: 111 KDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVG 170
Query: 235 ---KHTHEKPHKCSICDYASVELSKMRNHMRSH 264
+ ++C +C + H+ SH
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 35.8 bits (83), Expect = 6e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVK 211
R C VC R F L+ H +HT K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.4 bits (77), Expect = 0.004
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
+ C+ C F L RH R HT+EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK 29
Score = 33.1 bits (76), Expect = 0.005
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGER 268
+ C +C A ++ H RSHT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 23.8 bits (52), Expect = 9.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 157 HMCNYCNYTSPKRYLLARHLKSHSEER 183
+C C ++ L RH +SH+ E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 34.9 bits (79), Expect = 0.002
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGER 268
KP KCS+C+YA+ S ++ HM H+ E+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 30.6 bits (68), Expect = 0.045
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 281 KCWKCELCPYASSSQRHLESHMLIHTDQK 309
K +KC LC YA+ S+ +L++HM H+ +K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.3 bits (62), Expect = 0.39
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 211
S S +P KCS+CE ++ ++L+ H+N H+ K
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 32.7 bits (75), Expect = 0.009
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 239 EKPHKCSI--CDYASVELSKMRNHMRSHTGER 268
+K H C I C + S +R H+R HTGER
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 30.0 bits (68), Expect = 0.079
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 180 SEERPHKCSV--CERGFKTIASLQNHINTHTGVK 211
+++ H C + C + + + L+ H+ HTG +
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 32.0 bits (72), Expect = 0.013
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVK 211
+P+ C C+R F +LQ H+ HTG K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.5 bits (68), Expect = 0.045
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 210 VKPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
+KP+ C +C+ +F G L RHVR HT EK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRI-HTGEK 30
Score = 29.7 bits (66), Expect = 0.091
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGER 268
KP+ C C + ++ H+R HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 32.0 bits (72), Expect = 0.015
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 179 HSEERPHKCSVCERGFKTIASLQNHINTHT 208
S +RP C +C F T A+ H+ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 30.1 bits (67), Expect = 0.079
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 277 HEGEKCWKCELCPYASSSQRHLESHMLIHTD 307
G++ + C +C A +++ + H+ +HTD
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 29.7 bits (66), Expect = 0.097
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 207 HTGVKPHKCKYCESRFTTSGELVRHVR 233
+G +P C+ C S FTT RH++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 28.2 bits (62), Expect = 0.31
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHT 265
+ ++P C IC A + H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 36.1 bits (82), Expect = 0.016
Identities = 9/105 (8%), Positives = 27/105 (25%), Gaps = 8/105 (7%)
Query: 38 QQNETEPGQISVEQDINPDPEHVEMKKPQPRPKPKPLSKKLTKSEEEDLTVYDFEEVDEV 97
+ + + + + PE+ + + + + K E E
Sbjct: 8 HGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNE--------GEHARE 59
Query: 98 DPIGEEAPSSEEEDLTVYDFEEVDEVDPIGEEAPSTIEEDVDEKP 142
+ + + + + E + + + EE E
Sbjct: 60 NKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVV 104
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.8 bits (71), Expect = 0.020
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 179 HSEERPHKCSVCERGFKTIASLQNHINTHTG 209
S E+P+ C VC FK + H+ +H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.7 bits (63), Expect = 0.25
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 236 HTHEKPHKCSICDYASVELSKMRNHMRSHTG 266
+ EKP+ C +C +M H+RSH G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 27.6 bits (60), Expect = 0.87
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 207 HTGVKPHKCKYCESRFTTSGELVRHVRYKH 236
+G KP+ C C RF + HVR
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 34.8 bits (79), Expect = 0.026
Identities = 8/70 (11%), Positives = 20/70 (28%)
Query: 170 YLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 229
+ R ++ R + +++ H N G K + + E +L
Sbjct: 166 FRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLR 225
Query: 230 RHVRYKHTHE 239
+ +
Sbjct: 226 GPIHLSVLRQ 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.029
Identities = 48/355 (13%), Positives = 98/355 (27%), Gaps = 98/355 (27%)
Query: 6 QQLID-LNSSEYQTVTIVP-SEGSTGEVSYVLIVQQNETEPGQISVE-QDINPDPEHV-- 60
+Q+ D L+++ +++ S T + L+++ + P + E NP +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLSI 332
Query: 61 --EMKKPQP-RPK--PKPLSKKLTKSEEEDLTVYDFEEVDEVDPIGEEAPSSEEEDLTVY 115
E + KLT E L V + E ++ + L+V
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----------FDRLSV- 380
Query: 116 DFEEVDEVD-PI-------GEEAPSTIEEDVDEKPKLSKLNKKQVVAPAHMCNYCNYTSP 167
F P + S + V++ K S + K T
Sbjct: 381 -FPP--SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----------QPKESTI- 426
Query: 168 KRYLLARHLKSHSEERP--HKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTS 225
+ LK E H+ S+ +H N +
Sbjct: 427 SIPSIYLELKVKLENEYALHR------------SIVDHYNIP-------KTFDSDDLIPP 467
Query: 226 GE-------LVRHVRYKHTHEKPHKCSIC--DYASVELSKMRNHMRSHTGE--------- 267
+ H++ E+ + D+ +E K+R+ +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNASGSILNTLQQ 526
Query: 268 -RPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQIRI 321
+ Y+ + C+ P + L ++ + D +RI
Sbjct: 527 LKFYKPYI----------CDNDPKYERLVNAIL-DFLPKIEENLICSKYTDLLRI 570
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (68), Expect = 0.063
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 276 SHEGEKCWKCELCPYASSSQRHLESHMLIHT 306
S + EKC+KC C S ++L H IHT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 26.3 bits (57), Expect = 2.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHT-GVK 211
S +E+ KC+ CE+ F L H HT GVK
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 25.6 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 206 THTGVKPHKCKYCESRFTTSGELVRHVR 233
+ K KC CE F+ S L +H R
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHER 33
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 29.3 bits (66), Expect = 0.13
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTH 207
R + CS C+R F++ +L H+N H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 30.7 bits (68), Expect = 0.20
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 186 KCSVCERGFKTIASLQNHINT-HTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
C+V R KT+ L+ H+ KC++C +F + L H +H+ +
Sbjct: 29 TCNVVTR--KTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.23
Identities = 34/215 (15%), Positives = 58/215 (26%), Gaps = 58/215 (26%)
Query: 2 EEGPQQLIDLNSSEYQTVTIVPSEGSTGEVSYVLIVQQNETEPGQISVEQDINPDPEH-V 60
++ P +L V+ + G+ VL + E E + DI H +
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-GNDI-----HAL 104
Query: 61 EMKKPQPRPKPKPLSKKLTKSEEEDLTVYDFEEVDEVD-PIGEEAPS-----SEEEDLTV 114
K Q +K+L K+ Y P +++ S E + +
Sbjct: 105 AAKLLQENDTTLVKTKELIKN-------Y-ITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 115 YDFEEVDEVDPI----GEEAPSTIEEDVDEKPKLSKLNKKQVVAPAHMCNYCNYTSPKRY 170
I G ++ +E L L Y Y
Sbjct: 157 V---------AIFGGQG-----NTDDYFEE---LRDL-------------YQTYHVLVGD 186
Query: 171 LL---ARHLKSHSEERPHKCSVCERGFKTIASLQN 202
L+ A L V +G + L+N
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Score = 28.1 bits (62), Expect = 4.9
Identities = 11/110 (10%), Positives = 34/110 (30%), Gaps = 35/110 (31%)
Query: 98 DPIGEEAPSSEEEDLTVY--------DFEEVDEVDPIGEEAPSTIEE------DV----- 138
++ P++ E + + + +V + D + + E D+
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 139 --DEKPKLSKLNKKQVVAPAHMCNYCNYTSPKRYLLARHLKSHSEERPHK 186
++ + + K+++ K Y+ AR + ++
Sbjct: 107 KLLQENDTTLVKTKELI--------------KNYITARIMAKRPFDKKSN 142
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 28.3 bits (62), Expect = 0.29
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 240
K ++C+YCE R S L H++ KH+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 28.2 bits (62), Expect = 0.29
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 240 KPHKCSICDYASVELSKMRNHMRSHTGER 268
KP +C +C A + S + H+R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.4 bits (60), Expect = 0.63
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTGVK 211
+P +C +C + F +SL H+ HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.2 bits (62), Expect = 0.45
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHK 214
S S E+ H+C C F SL H H G K
Sbjct: 6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 25.5 bits (55), Expect = 4.5
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 237 THEKPHKCSICDYASVELSKMRNHMRSHTGER 268
+ EK H+C C + + H H G++
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 27.1 bits (59), Expect = 0.67
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 241 PHKCSICDYASVELSKMRNHMRSHT 265
P++C +C L+ M+ HMR H+
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGHS 27
Score = 27.1 bits (59), Expect = 0.69
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 184 PHKCSVCERGFKTIASLQNHINTHT 208
P++C +C G ++AS+Q H+ H+
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGHS 27
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 38
Score = 27.4 bits (60), Expect = 0.68
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 162 CNYTSPKRYLLARHLKSHSE 181
C+Y++P +Y L HLK H+
Sbjct: 17 CDYSTPDKYKLQAHLKVHTA 36
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 27.0 bits (59), Expect = 0.71
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 239 EKPHKCSICDYASVELSKMRNHMRSH 264
EKP CS+C S + S M H+R+H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.1 bits (64), Expect = 0.73
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 186 KCSVCER-GFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 241
C C+ G KTI L+ H+ + C +C + + + HV H
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 26.8 bits (58), Expect = 4.5
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 126 IGEEAPSTIEEDVDEKPKLSKLNKKQVVAPAHMCNYCNYTSPKRYLLARHLKSHSEERPH 185
I +E P ++E+ L ++K V P C + + +H+++ +E
Sbjct: 9 IRKEPPVYAAGSLEEQWYLEIVDKGSVSCPT--CQAVGRKTIEGLK--KHMENCKQE-MF 63
Query: 186 KCSVCERGFKTIASLQNHINTHTGVKP 212
C C + +++A ++ H+ + P
Sbjct: 64 TCHHCGKQLRSLAGMKYHVMANHNSLP 90
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 0.84
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 211
S S + C C + FK SLQ H+ HT K
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.4 bits (52), Expect = 9.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 159 CNYCNYTSPKRYLLARHLKSHSEER 183
C YCN ++ L HL+ H+ E+
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 27.1 bits (59), Expect = 0.89
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 183 RPHKCSVCERGFKTIASLQNHINTHTG 209
RP+ CSVC + F ++ H HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 0.90
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 178 SHSEERPHKCSVCERGFKTIASLQNHINTHT 208
S S + H C +C + FK+ +L++H HT
Sbjct: 3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT 33
Score = 24.4 bits (52), Expect = 8.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 276 SHEGEKCWKCELCPYASSSQRHLESHMLIHTDQ 308
S K C++C S+ L+SH L+HT
Sbjct: 3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure
initiativ midwest center for structural genomics; 2.78A
{Vibrio cholerae o1 biovar el tor}
Length = 152
Score = 29.2 bits (65), Expect = 1.0
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 16 YQTVTIVPSEGSTGEVSYVLIVQQNETE 43
YQ + ++P G + +V + + T
Sbjct: 119 YQNLEVIPIHSEDGTIEHVCLCVYDVTI 146
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 29.6 bits (66), Expect = 1.4
Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 8/132 (6%)
Query: 205 NTHTGVKPHKCKYCESRF-----TTSGEL-VRHVRYKHTHEKPHKCSICDYASVELSKMR 258
+ V PH +YC + ++SG L + ++ + S
Sbjct: 79 DGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDF- 137
Query: 259 NHMRSHTGERPYQLHCKSHEGEKCWKCELCPYASSSQRHLESHMLIHTDQKPYLCDHCDQ 318
G ++H + S + ++
Sbjct: 138 -KCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGL 196
Query: 319 IRILICVIIAIR 330
+R + V
Sbjct: 197 LRFVTAVGTQGA 208
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 29.4 bits (67), Expect = 1.6
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 58 EHVEMKKPQPRPKPKPLSKKLTKSEEEDLTVYDFEEVDEVD-PIGEEA 104
+ + P+ PK S + Y + D P+ E+A
Sbjct: 159 KRLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKA 206
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 26.3 bits (57), Expect = 1.9
Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 208 TGVKPHKCKYCESRFTTSGELVRHVRYKH 236
+G+K H C++C+ +++ L++H+R H
Sbjct: 6 SGIKQH-CRFCKKKYSDVKNLIKHIRDAH 33
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.0 bits (57), Expect = 2.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKH 236
K + C C FT L+RH + H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.0 bits (61), Expect = 2.1
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 270
+CK C + + + + H + + H + + + + +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRK-HANKVRRYMAINQGEDSVPAKKFKAAPAE---- 85
Query: 271 QLHCKSHEGEKCWKCELCPYASSSQRHLESHM 302
S ++ C +C SS ESH
Sbjct: 86 ----ISDGEDRSKCCPVCNMTFSSPVVAESHY 113
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 25.8 bits (56), Expect = 2.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 211 KPHKCKYCESRFTTSGELVRHVRY 234
KP+ C+ C RF S +L H+R+
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRH 24
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.5 bits (58), Expect = 3.4
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 171 LLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVR 230
+ H ++ R C C+ I L+ H + + G + C C R +L
Sbjct: 4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHED-YCGARTELCGNC-GRNVLVKDLKT 60
Query: 231 HVR 233
H
Sbjct: 61 HPE 63
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 26.6 bits (58), Expect = 7.0
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 185 HKCSVCERGFKTIASLQNHINTHTGVKPHK 214
H+C C R F +L+ H + K HK
Sbjct: 51 HRCLACARYFIDSTNLKTHFRS----KDHK 76
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 27.3 bits (60), Expect = 8.0
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 69 PKPKPLSKKLTKSEEEDLTVYDFEEVDEVDPIGEEAPSSEEEDLTVYDF-EEVDEVDPIG 127
P P+ L++++ E++ V + +PI E P ++ED + DF E+ P+
Sbjct: 478 PTPEELAERMLMPEDKIRKVLKIAK----EPISMETPIGDDEDSHLGDFIEDTTLELPLD 533
Query: 128 EEAPSTIEEDVDE 140
++ +
Sbjct: 534 SATTESLRAATHD 546
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 27.2 bits (60), Expect = 8.5
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 58 EHVEMKKPQPRPKPKPLSKKLTKSEEEDLTVYDFEEV--DEVDPIGEEAPSSEE--EDLT 113
H P+ PK K DL + D + E++ + EE + ++
Sbjct: 9 HHSSGLVPRGSHMPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKL 68
Query: 114 VYDFEEVDEVDPIGEEAPSTIEEDVDEKPKLSKLNKKQVVAP 155
D E + ++E E+P L++ ++ V+ P
Sbjct: 69 SKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFP 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 8.9
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 14/43 (32%)
Query: 140 EKPKLSKLNKK-QVVAPAHMCNYCNYTSPKRYLLARHLKSHSE 181
EK L KL ++ A ++P LA +K+ E
Sbjct: 18 EKQALKKLQASLKLYADD--------SAPA---LA--IKATME 47
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 27.2 bits (60), Expect = 9.0
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 69 PKPKPLSKKLTKSEEEDLTVYDFEEVDEV--DPIGEEAPSSEEEDLTVYDF-EEVDEVDP 125
P + +++ + EE ++ +P+ E P +E+D DF + + P
Sbjct: 301 PSYEEIAEAM----GPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDENLPSP 356
Query: 126 IGEEAPSTIEEDVDE 140
+ A S + E++++
Sbjct: 357 VEAAAQSLLSEELEK 371
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 25.0 bits (54), Expect = 9.1
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 214 KCKY--CESRFTTSGELVRHVRYKHTHEKPHKCSI--------CDYASVELSKMRNHMRS 263
KCK+ C ++ +L RH+ H + CD+ + + + NH+ +
Sbjct: 3 KCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA 62
Query: 264 H 264
Sbjct: 63 Q 63
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding;
HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP:
a.4.13.2
Length = 243
Score = 26.7 bits (60), Expect = 9.3
Identities = 8/73 (10%), Positives = 24/73 (32%), Gaps = 14/73 (19%)
Query: 81 SEEEDLTVYDFEEVDEV-----DPIGEEAPSSEEEDLTVYDFEEVDEVDPIGEEAPSTIE 135
++ ++ E+V P E + + +D I + ++
Sbjct: 137 ADHLGISP---EDVVLAQEAVRLPTSIHETVYENDGDPITL------LDQIADADEASWF 187
Query: 136 EDVDEKPKLSKLN 148
+ + K + +L+
Sbjct: 188 DKIALKKAIEELD 200
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.395
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,958,913
Number of extensions: 292779
Number of successful extensions: 2258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1624
Number of HSP's successfully gapped: 868
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.1 bits)