BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy996
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 221 bits (564), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/178 (61%), Positives = 136/178 (76%), Gaps = 17/178 (9%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNT 96
S T +P S +TD+VR+KCREML ++++G++ +G EE+A ELE+AIY+EF NT
Sbjct: 140 SQTSFP---SGGMTDAVRIKCREMLATALKIGEVP-EGCGEPEEMAAELEDAIYSEFNNT 195
Query: 97 DNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAN 156
D +YKNR+RSR+ANLKDPKNP L N++ GA++A +LA MT E EMA+
Sbjct: 196 DMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPE-------------EMAS 242
Query: 157 DEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
DEMK LR KF+KE+I+DAQLATVQGTKTDLLKC KCKKRNCTYNQ+QTRSADEPMTT
Sbjct: 243 DEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTF 300
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 138/225 (61%), Gaps = 37/225 (16%)
Query: 12 GISNNKDSSSKKK----------EAKEE---------KKED---KKPSVTQYPPQKSHNL 49
G S +KDS KKK EA+EE +K++ + V+ +P ++ +
Sbjct: 79 GPSTDKDSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFP--RAPST 136
Query: 50 TDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIA 109
+DSVRLKCREML +++ GD + A EEL +++EEAIY E +NTD +YKNRVRSRI+
Sbjct: 137 SDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS 196
Query: 110 NLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKE 169
NLKD KNP L +N + G I A MTAE EMA+DE+K +R KE
Sbjct: 197 NLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASDELKEMRKNLTKE 243
Query: 170 SIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 244 AIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTF 288
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 15/177 (8%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTD 97
V+ +P ++ + +DSVRLKCREML +++ GD + A EEL +++EEAIY E +NTD
Sbjct: 127 VSSFP--RAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTD 184
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L +N + G I A MTAE EMA+D
Sbjct: 185 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASD 231
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 232 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTF 288
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 15/177 (8%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTD 97
V+ +P ++ + +DSVRLKCREML +++ GD + A EEL +++EEAIY E +NTD
Sbjct: 127 VSSFP--RAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTD 184
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L +N + G I A MTAE EMA+D
Sbjct: 185 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASD 231
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 232 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTF 288
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 15/177 (8%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTD 97
V+ +P ++ + +DSVRLKCREML +++ GD + A EEL +++EEAIY E +NTD
Sbjct: 127 VSSFP--RAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTD 184
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L +N + G I A MTAE EMA+D
Sbjct: 185 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASD 231
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 232 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTF 288
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 174 bits (440), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 88/164 (53%), Positives = 114/164 (69%), Gaps = 13/164 (7%)
Query: 51 DSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIAN 110
DSVR KC EML +++ D D + +++A+E+E+ IY E K+TD +Y+NRVRSRI+N
Sbjct: 186 DSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISN 245
Query: 111 LKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKES 170
LKDP+NP L RN + GAISA +A MTAE EMA+DE++ LRN +E+
Sbjct: 246 LKDPRNPGLRRNVLSGAISAGLIAKMTAE-------------EMASDELRELRNAMTQEA 292
Query: 171 IDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
I + Q+A GT TDL +C KCKK+NCTYNQVQTRSADEPMTT
Sbjct: 293 IREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTF 336
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 173 bits (439), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/179 (51%), Positives = 119/179 (66%), Gaps = 15/179 (8%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKN 95
P+V P + DSVR KC EML +++ D D + ++LA+E+E+ IY E K+
Sbjct: 171 PAVCLLAP--CYLTGDSVRDKCVEMLSAALKAEDNFKDYGVNCDKLASEIEDHIYQELKS 228
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +Y+NRVRSRI+NLKDP+NP L RN + GAIS +A MTAE EMA
Sbjct: 229 TDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAE-------------EMA 275
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
+DE++ LRN +E+I + Q+A GT TDLL+C KCKK+NCTYNQVQTRSADEPMTT
Sbjct: 276 SDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTF 334
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 173 bits (439), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/164 (53%), Positives = 114/164 (69%), Gaps = 13/164 (7%)
Query: 51 DSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIAN 110
DSVR KC EML +++ D D + +++A+E+E+ IY E K+TD +Y+NRVRSRI+N
Sbjct: 185 DSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISN 244
Query: 111 LKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKES 170
LKDP+NP L RN + GAISA +A MTAE EMA+DE++ LRN +E+
Sbjct: 245 LKDPRNPGLRRNVLSGAISAGLIAKMTAE-------------EMASDELRELRNAMTQEA 291
Query: 171 IDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
I + Q+A GT TDL +C KCKK+NCTYNQVQTRSADEPMTT
Sbjct: 292 IREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTF 335
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 170 bits (431), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 124/208 (59%), Gaps = 15/208 (7%)
Query: 7 FPAPPGISNNKDSSSKKKEAKEEKKEDKKPSVTQYPPQKSHNLTDSVRLKCREMLQNSIQ 66
P P + ++ ++ E + P +T +PP D+VR KCREML ++Q
Sbjct: 94 MPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPV--TCDAVRNKCREMLTAALQ 151
Query: 67 VGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFG 126
+ A E L+ ++EE I+ + NTD +YKNRVRSRI+NLKD KNP L RN + G
Sbjct: 152 TDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCG 211
Query: 127 AISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDL 186
AI+ ++A MT+E EMA+DE+K +R KE+I + Q+A GT+TDL
Sbjct: 212 AITPQQIAVMTSE-------------EMASDELKEIRKAMTKEAIREHQMARTGGTQTDL 258
Query: 187 LKCGKCKKRNCTYNQVQTRSADEPMTTL 214
CGKC+K+NCTY QVQTRS+DEPMTT
Sbjct: 259 FTCGKCRKKNCTYTQVQTRSSDEPMTTF 286
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 123/205 (60%), Gaps = 25/205 (12%)
Query: 20 SSKKKEAKEEKKEDKK----------PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGD 69
+S KEA E + +K P +T +PP D+VR KCREML ++Q
Sbjct: 98 TSSSKEASEAQDPSRKRPELPRMPSTPRITTFPPVPV--TCDAVRTKCREMLTAALQTDH 155
Query: 70 LDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAIS 129
+ A E LA ++EE I+ + NTD +YKNRVRSR++NLKD KNP L R + GAI+
Sbjct: 156 DHVAIGADCECLAGQIEECIFRDVGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAIT 215
Query: 130 ASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKC 189
++A MT+E EMA+DE+K +R KE+I + Q+A GT+TDL C
Sbjct: 216 PQQIAVMTSE-------------EMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTC 262
Query: 190 GKCKKRNCTYNQVQTRSADEPMTTL 214
GKC+K+NCTY QVQTRS+DEPMTT
Sbjct: 263 GKCRKKNCTYTQVQTRSSDEPMTTF 287
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 163 bits (413), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 118/181 (65%), Gaps = 21/181 (11%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLA---SLEELATELEEAIYNE 92
P +T +P + D+VR KCREML ++Q D D +A S E L++++EE I+ +
Sbjct: 123 PRITTFP--QVPITCDAVRNKCREMLTLALQT---DHDHVAVGVSCEHLSSQIEECIFLD 177
Query: 93 FKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTF 152
NTD +YKNRVRSRI+NLKD KNP L RN + GAI+ ++A MT+E
Sbjct: 178 VGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSE------------- 224
Query: 153 EMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
EMA+DE+K +R KE+I + Q+A GT+TDL C KC+K+NCTY QVQTRS+DEPMT
Sbjct: 225 EMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMT 284
Query: 213 T 213
T
Sbjct: 285 T 285
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 118/181 (65%), Gaps = 21/181 (11%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLA---SLEELATELEEAIYNE 92
P +T +P + D+VR KCREML ++Q D D +A + E L++++EE I+ +
Sbjct: 123 PRITTFP--QVPITCDAVRNKCREMLTLALQT---DHDHVAVGVNCEHLSSQIEECIFLD 177
Query: 93 FKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTF 152
NTD +YKNRVRSRI+NLKD KNP L RN + GAI+ ++A MT+E
Sbjct: 178 VGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSE------------- 224
Query: 153 EMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
EMA+DE+K +R KE+I + Q+A GT+TDL C KC+K+NCTY QVQTRS+DEPMT
Sbjct: 225 EMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMT 284
Query: 213 T 213
T
Sbjct: 285 T 285
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 128/222 (57%), Gaps = 35/222 (15%)
Query: 9 APPGISNNKDSSSKKKEAKEEKKEDKKP----------------SVTQYPPQKSHNLTDS 52
APP + K+S +EAK EKK+ + P + +PP+ N D
Sbjct: 93 APPAKKHRKESV---EEAKPEKKKIEAPYKRPEPSSRPEIVAQFASASFPPKHLEN--DE 147
Query: 53 VRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLK 112
RLK ++L ++++ GD+ G EELA ++EE +Y+ ++T+ Y VRSRI NL+
Sbjct: 148 TRLKSAQLLLSALRFGDMP-QGTLDPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLR 206
Query: 113 DPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESID 172
D KN L N + G + A K ATMT+E EMA+ E++ +R+KF KE+I
Sbjct: 207 DKKNLALRENVLTGVVRAEKFATMTSE-------------EMASAEIREMRDKFTKEAIL 253
Query: 173 DAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
+ Q++ QGT +D+ KCGKC K+NCTY Q+QTRS+DEPMTT
Sbjct: 254 EHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTF 295
>sp|Q3US16|TEANC_MOUSE Transcription elongation factor A N-terminal and central
domain-containing protein OS=Mus musculus GN=Tceanc PE=2
SV=1
Length = 359
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 28/222 (12%)
Query: 6 LFP---APPGISNNKDSSSKKKEAKEEKKEDKKPSVTQYPPQKSHNLTDSVRLKCREMLQ 62
L P A P + +SS+ + E E + T+ SVR KC E+L
Sbjct: 132 LLPQDAAKPAAAIGSESSTAQMEINEGYLKGDDSECTRKSSGVFQGTLVSVRSKCVELLY 191
Query: 63 NSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRN 122
++ D + + LA E+EE I+ N +YK +RS++ANLK+P+N L +N
Sbjct: 192 TALASSCTDHTEVHIWQNLAREIEEHIFTLHSNNIKKYKTSIRSKVANLKNPRNFHLQQN 251
Query: 123 YIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDDAQL-ATVQG 181
++ G +SA + A M+ +MA+ E+K LR + + SI + L +V G
Sbjct: 252 FLSGTMSAREFA-------------EMSVLDMASQELKQLRASYTESSIQEHCLPQSVDG 298
Query: 182 TKTDLLKCGKCKKRNCTY-----------NQVQTRSADEPMT 212
T T+ +KC +C K NC + VQ + DE MT
Sbjct: 299 TWTNKIKCRRCDKYNCKVTVIARGTLFLPSWVQNSNPDEQMT 340
>sp|Q8N8B7|TEANC_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein OS=Homo sapiens GN=TCEANC PE=2
SV=2
Length = 351
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
Query: 27 KEEKKEDKKPSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELE 86
KEE D P T + + T +R KC E+L ++ D + A E+E
Sbjct: 147 KEEHFGDGDPESTGKRSSELLDPTTPMRTKCIELLYAALTSSSTDQPKADLWQNFAREIE 206
Query: 87 EAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSAD 146
E ++ + +YK +RS++ANLK+P+N L +N + G S + A MT
Sbjct: 207 EHVFTLYSKNIKKYKTCIRSKVANLKNPRNSHLQQNLLSGTTSPREFAEMTV-------- 258
Query: 147 EPMTTFEMANDEMKTLRNKFIKESIDDAQLA-TVQGTKTDLLKCGKCKKRNC 197
EMAN E+K LR + + I + L + GT+T+ +KC +C+K NC
Sbjct: 259 -----MEMANKELKQLRASYTESCIQEHYLPQVIDGTQTNKIKCRRCEKYNC 305
>sp|Q9GMV6|TEANC_MACFA Transcription elongation factor A N-terminal and central
domain-containing protein OS=Macaca fascicularis
GN=TCEANC PE=2 SV=1
Length = 350
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 53 VRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLK 112
+R KC E+L ++ D + A E+EE ++ + +YK +RS++ANLK
Sbjct: 172 MRTKCIELLYAALTSSSADQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKVANLK 231
Query: 113 DPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESID 172
+PKN L +N + G +S + A MT EMAN E+K LR + + I
Sbjct: 232 NPKNSHLQQNLLSGTMSPREFAEMTV-------------MEMANKELKQLRASYTESCIQ 278
Query: 173 DAQLA-TVQGTKTDLLKCGKCKKRNC 197
+ L + GT+T+ +KC +C+K NC
Sbjct: 279 EHYLPQVIDGTQTNKIKCRRCEKYNC 304
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Query: 79 EELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTA 138
E++A E+E +Y+ ++ YK ++RS NLK KN +L + + IS +K +M
Sbjct: 184 EDIAVEIEAEMYDIYRGVSKEYKEKLRSFKFNLK--KNDILRLSLLNRQISVAKFCSMD- 240
Query: 139 EVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCT 198
+ MA+D++K R K K + + + L TD +CGKCK+R CT
Sbjct: 241 ------------IYSMASDDLKEERKKLDKFNTEASMLGQNNEATTDQFQCGKCKQRKCT 288
Query: 199 YNQVQTRSADEPMTTL 214
Y Q+QTRSADEP TT
Sbjct: 289 YTQLQTRSADEPPTTF 304
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 89/166 (53%), Gaps = 18/166 (10%)
Query: 51 DSVRLKCREMLQNSIQVGDLDMDGLASLE-ELATELE-EAIYNEFKNTDNRYKNRVRSRI 108
D +R C ++ N++ + D D +SL A E++ + + T + Y+NR+RS
Sbjct: 131 DKIRNNCIGLMYNALVI---DSDESSSLIIAKAKEIDAQVLARAAGKTGSEYRNRMRSLY 187
Query: 109 ANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIK 168
NLKD NP L + + I+ +L+TMT + E+A+++ + K +
Sbjct: 188 MNLKDKNNPKLRASVLRNEITPQRLSTMT-------------SAELASEDRRKEDAKLEQ 234
Query: 169 ESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
E++ AQ A Q TDL CGKCK++ +Y Q+QTRSADEPMTT
Sbjct: 235 ENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTF 280
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 87 EAIYNEFKNTDNR---YKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTR 143
E+ N+ N D YK R R +N+ NP L G I+ LAT A+
Sbjct: 179 ESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAK---- 234
Query: 144 SADEPMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQ 203
++A +K + K+++ +AQ AT++ + TD CGKCK++ +Y Q+Q
Sbjct: 235 ---------DLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQ 285
Query: 204 TRSADEPMTTL 214
TRSADEP+TT
Sbjct: 286 TRSADEPLTTF 296
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLE----ELATELEEAIYNEF 93
V+ P Q + + ++R +E+L + D D L E ++A +E+ ++N F
Sbjct: 656 VSPAPSQPNSQIRQNIRRSLKEILWKRVN----DSDDLIMTENEVGKIALHIEKEMFNLF 711
Query: 94 KNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAE 139
+ TDNRYK++ RS + NLKDPKN L + IS +KL M E
Sbjct: 712 QVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPE 757
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 51 DSVRLKCREMLQNSIQVGDLDMDGLASLEE----LATELEEAIYNEFKNTDNRYKNRVRS 106
D +R R L++ I + L L EE +AT++E+ +++ F++TD +YKN+ RS
Sbjct: 925 DQIRQSVRHSLKD-ILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRS 983
Query: 107 RIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKF 166
+ NLKDPKN +L + + G ++ L M+ E E+A+ E+ R +
Sbjct: 984 LMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPE-------------ELASKELAAWRRRE 1030
Query: 167 IKESID 172
+ +I+
Sbjct: 1031 NRHTIE 1036
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 56/103 (54%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNT 96
+++ P Q + + ++R +E+L + D + + ++A +E+ ++N F+ T
Sbjct: 658 AMSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVT 717
Query: 97 DNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAE 139
DNRYK++ RS + NLKDPKN L + IS +KL + E
Sbjct: 718 DNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPE 760
>sp|P36106|BYE1_YEAST Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BYE1 PE=1 SV=1
Length = 594
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 21/107 (19%)
Query: 73 DGLASLEELATELEEAIYN-----EFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGA 127
D ++ +E A LEE +Y EF D Y +VRS +NLKD KN L + + G
Sbjct: 270 DVISISQEFAHNLEEELYKACLNVEFGTLDKIYTEKVRSLYSNLKDKKNLELKAHVVEGK 329
Query: 128 ISASKLATMTAEVQTRSADEPMTTFEMAN---DEMKTLRNKFIKESI 171
+ +KL M A E+AN E K R+K I E+
Sbjct: 330 LPLNKLVNMNAS-------------ELANPDLQEFKEKRDKIILENF 363
>sp|A6ZZW1|BYE1_YEAS7 Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=BYE1 PE=3 SV=1
Length = 594
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 73 DGLASLEELATELEEAIYN-----EFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGA 127
D ++ +E A LEE +Y EF D Y +VRS +NLKD KN L + + G
Sbjct: 270 DVISISQEFAHNLEEELYKACLNIEFGTLDKIYTEKVRSLYSNLKDKKNLELKAHVVEGK 329
Query: 128 ISASKLATMTA 138
+ +KL M A
Sbjct: 330 LPLNKLVNMNA 340
>sp|P0C8F8|TFS2_ASFWA Transcription factor S-II-related protein OS=African swine fever
virus (isolate Warthog/Namibia/Wart80/1980) GN=War-150
PE=2 SV=1
Length = 243
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 184 TDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
+ L KC CK+R CTY +VQTR+ DEP T
Sbjct: 201 SQLYKCPNCKQRMCTYREVQTRALDEPSTIF 231
>sp|P0C8F7|TFS2_ASFP4 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-152 PE=2 SV=1
Length = 243
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 184 TDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
+ L KC CK+R CTY +VQTR+ DEP T
Sbjct: 201 SQLYKCPNCKQRMCTYREVQTRALDEPSTIF 231
>sp|P27948|TFS2_ASFB7 Transcription factor S-II-related protein OS=African swine fever
virus (strain Badajoz 1971 Vero-adapted) GN=BA71V-140
PE=2 SV=1
Length = 243
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 184 TDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
+ L KC CK+R CTY +VQTR+ DEP T
Sbjct: 201 SQLYKCPNCKQRMCTYREVQTRALDEPSTIF 231
>sp|P0C8F6|TFS2_ASFM2 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-147
PE=2 SV=1
Length = 243
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 184 TDLLKCGKCKKRNCTYNQVQTRSADEPMTTL 214
+ L KC CK+R CTY +VQTR+ DEP T
Sbjct: 201 SQLYKCPNCKQRMCTYREVQTRALDEPSTIF 231
>sp|P0C8F5|TFS2_ASFK5 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-151 PE=2
SV=1
Length = 243
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 184 TDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
+ L KC CK+R CTY +VQTR+ DEP T
Sbjct: 201 SQLYKCPNCKQRMCTYREVQTRALDEPST 229
>sp|Q6ZMY3|SPOC1_HUMAN SPOC domain-containing protein 1 OS=Homo sapiens GN=SPOCD1 PE=2
SV=1
Length = 1216
Score = 40.0 bits (92), Expect = 0.013, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 78 LEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMT 137
+E +A +E A+++ + T+ RYK + RS + NL+DP+N L + G ++ L M+
Sbjct: 637 VEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMS 696
Query: 138 A 138
+
Sbjct: 697 S 697
>sp|Q5UQS8|TFS2_MIMIV Transcription factor S-II-related protein OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R339 PE=3 SV=1
Length = 173
Score = 37.7 bits (86), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 8/45 (17%)
Query: 175 QLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFYI 219
Q+ATV+ C CK + + Q+QTRSADEPMTT FYI
Sbjct: 125 QMATVEWKP-----CYACKNTSYHFYQLQTRSADEPMTT---FYI 161
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 139 EVQTRSADEPMTTFEMANDEMKTLR 163
++QTRSADEPMTTF + + MKT +
Sbjct: 146 QLQTRSADEPMTTFYICKNCMKTYK 170
>sp|Q6FJ00|BYE1_CANGA Transcription factor BYE1 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BYE1 PE=3
SV=1
Length = 607
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 19/100 (19%)
Query: 79 EELATELEEAIYNEFKNTDNR------YKNRVRSRIANLKDPKNPMLSRNYIFGAISASK 132
+E A E+E +++ ++ N Y +VR +NLKDPKN L I + +
Sbjct: 278 DEFAEEMESKLFSHCRSISNYKTLISVYTEKVRVLFSNLKDPKNLSLKEAVINRQLDLEQ 337
Query: 133 LATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESID 172
L +M+A ++AN ++++++ K + ID
Sbjct: 338 LVSMSAT-------------DLANPDLQSMKKKIDSQKID 364
>sp|Q9CQZ7|RPC10_MOUSE DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus
GN=Polr3k PE=2 SV=1
Length = 108
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 189 CGKCKKRNCTYNQVQTRSADEPMTTLH 215
C KC+ + Q+QTRSADEPMTT +
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFY 95
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 16/67 (23%)
Query: 100 YKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAE--------------VQTRSA 145
Y + + ++ N K PK + + + G +A + TAE +QTRSA
Sbjct: 30 YVHNITRKVTNRKYPK--LKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSA 87
Query: 146 DEPMTTF 152
DEPMTTF
Sbjct: 88 DEPMTTF 94
>sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1
SV=1
Length = 110
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 128 ISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDD---AQLATVQGTKT 184
I++ T ++ + P+ E+ + R K ++ +DD V TKT
Sbjct: 14 ITSGDSGVYTLACRSCPYEFPIEGIEIYD------RKKLPRKEVDDVLGGGWDNVDQTKT 67
Query: 185 DLLKCGKCKKRNCTYNQVQTRSADEPMTTLH 215
C + + Q+Q RSADEPMTT +
Sbjct: 68 QCPNYDTCGGESAYFFQLQIRSADEPMTTFY 98
>sp|Q9Y2Y1|RPC10_HUMAN DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens
GN=POLR3K PE=1 SV=2
Length = 108
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 189 CGKCKKRNCTYNQVQTRSADEPMTTLH 215
C KC+ + Q+QTRSADEPMTT +
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFY 95
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 16/67 (23%)
Query: 100 YKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAE--------------VQTRSA 145
Y + + ++ N K PK + + + G +A + TAE +QTRSA
Sbjct: 30 YVHNITRKVTNRKYPK--LKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSA 87
Query: 146 DEPMTTF 152
DEPMTTF
Sbjct: 88 DEPMTTF 94
>sp|B0CE09|UVRB_ACAM1 UvrABC system protein B OS=Acaryochloris marina (strain MBIC 11017)
GN=uvrB PE=3 SV=1
Length = 668
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 14 SNNKDSSSKKKEAKEEKKEDKKPSVTQYPPQKSHN------LTDSVRLKCREMLQNSIQV 67
S K S ++ K + +KK +T P +K + L S RL +E+ Q
Sbjct: 558 SMEKAISETERRRKIQLAYNKKHGITPQPVKKGSDNAILAFLEVSRRLNTQELEDAYEQA 617
Query: 68 GDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLK 112
DL ++ S+ EL T+LE + KN + + R RI NL+
Sbjct: 618 DDLPLE---SVPELITQLEAQMKEAAKNLEFEEAAKYRDRIKNLR 659
>sp|Q9Y7V2|BYE1_SCHPO Transcription factor bye1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bye1 PE=3 SV=3
Length = 721
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 25/114 (21%)
Query: 72 MDGLASLEEL-----ATELEEAIYNEFKNT-------DNRYKNRVRSRIANLKDPKNPML 119
++G+ LE+L A +LE ++ T +N+Y+ + R+ NL D KNP
Sbjct: 238 LEGVQGLEDLNSTSLALQLEHIMFMVLSYTTDHSLTPNNKYREKFRALRFNLVDDKNPAF 297
Query: 120 SRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDD 173
+ IS + L +++E EMAN ++K L + ++S ++
Sbjct: 298 RARVLKNEISFNDLVNLSSE-------------EMANPDLKNLAEEIRQQSTEN 338
>sp|Q8DS88|NRDR_STRMU Transcriptional repressor NrdR OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=nrdR PE=3 SV=1
Length = 163
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 63 NSIQVGDLDMDGLASLEELATELEEAIYNEFKNTD------NRYKNRVRSR 107
+S+ +G+L MD LA L+E+ ++Y FK+ D + NRVRS+
Sbjct: 104 SSVVIGNLVMDELAELDEITYVRFASVYRSFKDVDEIEALLQQITNRVRSK 154
>sp|O57187|RPO5_VACCA DNA-directed RNA polymerase 30 kDa polypeptide OS=Vaccinia virus
(strain Ankara) GN=RPO30 PE=4 SV=1
Length = 259
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 189 CGKCKKRNCTYNQVQTRSADEPMTTLH 215
C CK RN T +QTR+ADEP H
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRH 185
>sp|P21082|RP30_VACCC DNA-directed RNA polymerase 30 kDa polypeptide OS=Vaccinia virus
(strain Copenhagen) GN=RPO30 PE=3 SV=1
Length = 259
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 189 CGKCKKRNCTYNQVQTRSADEPMTTLH 215
C CK RN T +QTR+ADEP H
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRH 185
>sp|P21603|RP30_VACCW DNA-directed RNA polymerase 30 kDa polypeptide OS=Vaccinia virus
(strain Western Reserve) GN=RPO30 PE=3 SV=1
Length = 259
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 189 CGKCKKRNCTYNQVQTRSADEPMTTLH 215
C CK RN T +QTR+ADEP H
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRH 185
>sp|P33796|RP30_VAR67 DNA-directed RNA polymerase 30 kDa polypeptide OS=Variola virus
(isolate Human/India/Ind3/1967) GN=RPO30 PE=3 SV=1
Length = 259
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 189 CGKCKKRNCTYNQVQTRSADEPMTTLH 215
C CK RN T +QTR+ADEP H
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRH 185
>sp|Q5TB80|QN1_HUMAN Protein QN1 homolog OS=Homo sapiens GN=KIAA1009 PE=1 SV=2
Length = 1403
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 41 YPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRY 100
Y P H TDS E+LQ + ++ + +++GL S + EA+ N+F+N+ R
Sbjct: 1159 YQP---HTFTDS---HVSEVLQENYRLKN-ELEGLISEKNELKMKSEAVMNQFENSMRRV 1211
Query: 101 KNRVRSRIANLKDPKNPMLSRNYIFGAI--SASKLATMTAEVQTR 143
K + IA+LK + + A+ S+SK+A + ++ T+
Sbjct: 1212 KEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQ 1256
>sp|Q2QV94|EXOC5_ORYSJ Exocyst complex component 5 OS=Oryza sativa subsp. japonica
GN=SEC10 PE=2 SV=1
Length = 806
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 35 KPSVTQYPPQKSHNLTDSVRL------KCREMLQ--NSIQVGDLDMDGLASLEELATELE 86
KPS+ PP + L +R+ K +E+ + SI GDLD++GL ++ + E
Sbjct: 366 KPSLANLPPIEEGGLLHYLRVLAVAYDKTKELAKELQSISCGDLDIEGLTESIFVSHKDE 425
Query: 87 EAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSAD 146
Y EF+ R + +S++A L+ ++ G I S A +T +Q + +
Sbjct: 426 ---YTEFEQASLR--QQYQSKMAELRAEAK---QQSESTGTIGRSNGAAVTTSLQQQISV 477
Query: 147 EPMTTFEMANDE 158
+T F N+E
Sbjct: 478 TVVTEFVRWNEE 489
>sp|Q2M2S7|RPC10_BOVIN DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus
GN=POLR3K PE=3 SV=1
Length = 108
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 189 CGKCKKRNCTYNQVQTRSADEPMTTLH 215
C KC+ + Q+QTR ADEPMTT +
Sbjct: 69 CPKCEHPRAYFMQLQTRYADEPMTTFY 95
>sp|Q9BBN6|YCF1_LOTJA Putative membrane protein ycf1 OS=Lotus japonicus GN=ycf1 PE=3 SV=1
Length = 1793
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 90 YNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPM 149
Y+E +TDN K + +A ++ + P R+ I G+I A + T+T ++ RS D P+
Sbjct: 631 YDETTDTDNTEK---KKELALIRYSQQPDFRRDIIKGSIRAQRRKTVTCKLFQRSVDSPL 687
>sp|Q6GZP4|081R_FRG3G Putative transcription elongation factor S-II-like protein 81R
OS=Frog virus 3 (isolate Goorha) GN=FV3-081R PE=4 SV=1
Length = 92
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 187 LKCGKCKKRNCTYNQVQTRSADEPMTTL 214
+KC C R Q QTRSADEPMT
Sbjct: 53 VKCPGCGSRRVHALQRQTRSADEPMTLF 80
>sp|E1C760|UVSSA_CHICK UV-stimulated scaffold protein A OS=Gallus gallus GN=UVSSA PE=3
SV=1
Length = 730
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 104 VRSRIANLKDPKNPMLSRNYIFGAIS---ASKLATMTAEVQTRSADEPMTTFEMANDEMK 160
V S + L D RN+ G IS A L TA+++ ++ D K
Sbjct: 287 VESGVPVLGDDDYETFVRNH--GLISHKYALDLELSTADIKVHENEDNTAVINSVADAHK 344
Query: 161 TLRNKFIKESIDDAQLATVQGTKTDLLKCG 190
+RNKF+ QL T G D L+C
Sbjct: 345 LVRNKFLPSVQSWIQLFTRAGINDDRLRCA 374
>sp|Q8DY70|NRDR_STRA5 Transcriptional repressor NrdR OS=Streptococcus agalactiae serotype
V (strain ATCC BAA-611 / 2603 V/R) GN=nrdR PE=3 SV=1
Length = 159
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 63 NSIQVGDLDMDGLASLEELATELEEAIYNEFKNTD------NRYKNRVRSR 107
+SI +G+L MD LA L+E+ ++Y FK+ D + RVRS+
Sbjct: 104 SSITIGNLVMDELAELDEITYVRFASVYKSFKDVDEIEELLQQITKRVRSK 154
>sp|Q8E3T6|NRDR_STRA3 Transcriptional repressor NrdR OS=Streptococcus agalactiae serotype
III (strain NEM316) GN=nrdR PE=3 SV=1
Length = 159
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 63 NSIQVGDLDMDGLASLEELATELEEAIYNEFKNTD------NRYKNRVRSR 107
+SI +G+L MD LA L+E+ ++Y FK+ D + RVRS+
Sbjct: 104 SSITIGNLVMDELAELDEITYVRFASVYKSFKDVDEIEELLQQITKRVRSK 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,549,537
Number of Sequences: 539616
Number of extensions: 2811812
Number of successful extensions: 15248
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 14997
Number of HSP's gapped (non-prelim): 300
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)