Query psy996
Match_columns 221
No_of_seqs 156 out of 889
Neff 5.7
Searched_HMMs 29240
Date Sat Aug 17 00:03:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3po3_S Transcription elongatio 100.0 4.3E-44 1.5E-48 300.3 11.2 158 47-219 11-170 (178)
2 1pqv_S STP-alpha, transcriptio 100.0 5.8E-41 2E-45 302.1 18.6 158 47-219 142-301 (309)
3 2lw4_A Transcription elongatio 100.0 1.1E-29 3.8E-34 198.9 2.2 111 41-166 2-112 (113)
4 3ndq_A Transcription elongatio 99.9 2E-28 6.7E-33 190.3 6.8 107 37-158 2-108 (108)
5 2dme_A PHD finger protein 3; P 99.9 2.2E-24 7.5E-29 170.4 3.2 105 49-166 8-115 (120)
6 1tfi_A Transcriptional elongat 99.6 5.1E-16 1.8E-20 104.9 4.4 40 180-219 3-42 (50)
7 1qyp_A RNA polymerase II; tran 99.4 3.1E-13 1.1E-17 93.0 4.4 37 183-219 12-48 (57)
8 3h0g_I DNA-directed RNA polyme 99.2 3.2E-12 1.1E-16 99.4 3.6 36 184-219 70-105 (113)
9 1twf_I B12.6, DNA-directed RNA 99.2 4.6E-12 1.6E-16 99.8 4.1 35 185-219 71-105 (122)
10 3qt1_I DNA-directed RNA polyme 99.1 5.4E-12 1.8E-16 101.0 0.0 35 185-219 91-125 (133)
11 1tfi_A Transcriptional elongat 96.0 0.00071 2.4E-08 45.1 -1.0 18 136-153 21-38 (50)
12 3po3_S Transcription elongatio 94.4 0.01 3.5E-07 49.1 1.1 30 122-153 137-166 (178)
13 3h0g_I DNA-directed RNA polyme 94.4 0.01 3.4E-07 45.6 0.8 16 137-152 85-100 (113)
14 1qyp_A RNA polymerase II; tran 94.2 0.0064 2.2E-07 41.0 -0.6 28 123-152 16-43 (57)
15 1pqv_S STP-alpha, transcriptio 93.5 0.014 4.8E-07 52.0 0.1 28 123-152 269-296 (309)
16 3qt1_I DNA-directed RNA polyme 93.4 0.015 5E-07 46.1 0.0 21 136-156 104-124 (133)
17 1twf_I B12.6, DNA-directed RNA 92.3 0.019 6.7E-07 44.5 -0.6 17 136-152 84-100 (122)
18 1kdx_A CBP; complex (transcrip 72.4 11 0.00038 27.1 6.3 69 35-112 4-76 (81)
19 2k0n_A Mediator of RNA polymer 65.1 11 0.00039 27.1 4.9 62 50-112 8-73 (85)
20 2i5o_A DNA polymerase ETA; zin 35.2 10 0.00036 23.5 0.5 14 182-195 5-18 (39)
21 1xdx_A Tctex1 light chain prot 33.4 56 0.0019 24.1 4.5 53 39-101 11-63 (114)
22 1pkp_A Ribosomal protein S5; 2 28.7 21 0.00073 28.4 1.5 13 3-15 93-105 (150)
23 2vqe_E 30S ribosomal protein S 26.1 25 0.00085 28.3 1.5 14 3-16 88-101 (162)
24 1ygt_A Cytoplasmic dynein ligh 24.7 1.1E+02 0.0038 22.3 4.8 53 40-102 9-61 (111)
25 3r8n_E 30S ribosomal protein S 23.6 31 0.0011 27.4 1.5 15 3-17 84-98 (150)
26 2gut_A ARC/mediator, positive 23.5 67 0.0023 22.8 3.2 57 49-112 10-66 (77)
27 2e2z_A TIM15; protein import, 22.4 18 0.00062 27.1 -0.0 30 186-218 13-42 (100)
28 3i1m_E 30S ribosomal protein S 21.9 34 0.0012 27.7 1.5 13 4-16 94-106 (167)
29 3a43_A HYPD, hydrogenase nicke 21.5 42 0.0014 25.9 1.9 14 186-199 107-120 (139)
30 3u50_C Telomerase-associated p 20.6 34 0.0012 27.7 1.2 37 183-219 56-94 (172)
No 1
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=100.00 E-value=4.3e-44 Score=300.32 Aligned_cols=158 Identities=28% Similarity=0.362 Sum_probs=145.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCchhcHHHHHHHHHHHHHHHhcC-CCh-hhhhHHHHHHHhcCCCCChhhhhccc
Q psy996 47 HNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKN-TDN-RYKNRVRSRIANLKDPKNPMLSRNYI 124 (221)
Q Consensus 47 ~~~~d~vR~k~~~lL~~aL~~~~d~~~~~~~~~~lA~~IE~~i~~~~~~-~~~-~Yk~k~Rsl~~nLk~~kN~~L~~~Il 124 (221)
+.++|++|++|+++|++||..++++.+ .++..+|.+||++||+.++. ++. .|++++|+|++||||++||.|+.+|+
T Consensus 11 ~~~~d~vRdk~~~lL~~aL~~~~~~~~--~~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd~~N~~Lr~~vl 88 (178)
T 3po3_S 11 AIYHHKLRDQVLKALYDVLAKESEHPP--QSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIA 88 (178)
T ss_dssp ----CHHHHHHHHHHHHHTTSSSSCST--THHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHSSSCSHHHHHHH
T ss_pred CcCCChHHHHHHHHHHHHHhcCCCCch--hhHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCCCCCHHHHHHHh
Confidence 348999999999999999999776544 36789999999999999986 455 89999999999999999999999999
Q ss_pred cCcCChhhhhcCChhhhhccCCCCchhHhhccHHHHHHHHHHHHHhHHHHHhhhhcCcccccccccccCCCceeEEEEec
Q psy996 125 FGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQT 204 (221)
Q Consensus 125 ~G~isp~~l~~m~~q~Q~rsadep~t~fElas~e~k~~r~k~~~e~l~~~q~~~~~~~~T~~~~C~kC~~~~~~y~q~Qt 204 (221)
+|+|+|+.|+.|+++ ||||+|++++++++.+++|.+++.+..++++|+.+.||+||+++++|+|+|+
T Consensus 89 ~g~isp~~lv~Ms~e-------------Elas~elk~~~e~~~~e~l~~~~~~~~~~~~t~~~~Cp~C~~~~a~~~q~Q~ 155 (178)
T 3po3_S 89 NGDITPEFLATCDAK-------------DLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQT 155 (178)
T ss_dssp HCCCTTHHHHCCTTT-------------TSSCSHHHHHHHHHHHHHHHHTBCCCCCCCCBSSSCCSSSCCSCEECCCCCC
T ss_pred cCCCCHHHHHhcCch-------------hhCCHHHHHHHHHHHHHHHHHhhhccccCCCcCCcCCCCCCCCceEEEEeec
Confidence 999999999999999 9999999999999999999999999888888999999999999999999999
Q ss_pred cCCCCCceEEEEeec
Q psy996 205 RSADEPMTTLHHFYI 219 (221)
Q Consensus 205 RsaDEpmT~f~~C~~ 219 (221)
||||||||+||+|++
T Consensus 156 rsaDE~mt~f~~C~~ 170 (178)
T 3po3_S 156 RSAAAPLTTFCTCEA 170 (178)
T ss_dssp SCTTSCCCCCEEETT
T ss_pred ccCCCCCcEEEEcCC
Confidence 999999999999975
No 2
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=100.00 E-value=5.8e-41 Score=302.07 Aligned_cols=158 Identities=29% Similarity=0.377 Sum_probs=148.1
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCchhcHHHHHHHHHHHHHHHhcCCChh--hhhHHHHHHHhcCCCCChhhhhccc
Q psy996 47 HNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNR--YKNRVRSRIANLKDPKNPMLSRNYI 124 (221)
Q Consensus 47 ~~~~d~vR~k~~~lL~~aL~~~~d~~~~~~~~~~lA~~IE~~i~~~~~~~~~~--Yk~k~Rsl~~nLk~~kN~~L~~~Il 124 (221)
+.++|.+|++|+++|+++|..+.++.+. ++..+|.+||.+||+.++.++.. |++++|+|+|||||++||.|+.+|+
T Consensus 142 ~~~~d~~R~k~r~~L~~aL~~~~~~~~~--~~~~~A~~IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl 219 (309)
T 1pqv_S 142 AIYHHKLRDQVLKALYDVLAKESEHPPQ--SILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIA 219 (309)
T ss_pred CcCChHHHHHHHHHHHHHHhcCCCccch--hHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCcCCChHHHHHHH
Confidence 4578999999999999999987665443 67899999999999999877767 9999999999999999999999999
Q ss_pred cCcCChhhhhcCChhhhhccCCCCchhHhhccHHHHHHHHHHHHHhHHHHHhhhhcCcccccccccccCCCceeEEEEec
Q psy996 125 FGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQT 204 (221)
Q Consensus 125 ~G~isp~~l~~m~~q~Q~rsadep~t~fElas~e~k~~r~k~~~e~l~~~q~~~~~~~~T~~~~C~kC~~~~~~y~q~Qt 204 (221)
.|+|+|++|+.|+++ |||++|++++++++.+++|++++++...++.|+.+.|++||+++|+|+|+|+
T Consensus 220 ~g~i~p~~lv~Ms~e-------------Elasde~k~~~~~~~~e~l~~~~~~~~~~~~~~~~~C~~C~~~~~~~~q~Q~ 286 (309)
T 1pqv_S 220 NGDITPEFLATCDAK-------------DLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQT 286 (309)
T ss_pred cCCCCHHHHhcCCHH-------------HhCCHHHHHHHHHHHHHHHHHhhhccccccCcccccCCCCCCCeeEEEEeec
Confidence 999999999999999 9999999999999999999999998877788899999999999999999999
Q ss_pred cCCCCCceEEEEeec
Q psy996 205 RSADEPMTTLHHFYI 219 (221)
Q Consensus 205 RsaDEpmT~f~~C~~ 219 (221)
||||||||+||+|++
T Consensus 287 rsaDe~~t~f~~C~~ 301 (309)
T 1pqv_S 287 RSADEPLTTFCTCEA 301 (309)
T ss_pred ccCCCCCcEEEEeCC
Confidence 999999999999975
No 3
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.95 E-value=1.1e-29 Score=198.86 Aligned_cols=111 Identities=48% Similarity=0.688 Sum_probs=102.2
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCchhcHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHhcCCCCChhhh
Q psy996 41 YPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLS 120 (221)
Q Consensus 41 ~pp~~~~~~~d~vR~k~~~lL~~aL~~~~d~~~~~~~~~~lA~~IE~~i~~~~~~~~~~Yk~k~Rsl~~nLk~~kN~~L~ 120 (221)
+|| .|.++|++|++|+++|++||..+.+..+...++..+|.+||.++|..|+.++..|+.++|+|+|||||++||+|+
T Consensus 2 ~~p--~p~t~D~vRdk~~e~L~~aL~~~~~~~~~~~~~~~~A~~IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~Np~Lr 79 (113)
T 2lw4_A 2 HMP--VPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLR 79 (113)
T ss_dssp CCC--SCCCCSTTHHHHHHHHHHHHHSSTHHHHHTCCHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSSSHHH
T ss_pred CCC--CCCCCcHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHH
Confidence 456 788999999999999999999876554445678899999999999999998899999999999999999999999
Q ss_pred hccccCcCChhhhhcCChhhhhccCCCCchhHhhccHHHHHHHHHH
Q psy996 121 RNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKF 166 (221)
Q Consensus 121 ~~Il~G~isp~~l~~m~~q~Q~rsadep~t~fElas~e~k~~r~k~ 166 (221)
.+|++|.|+|.+||.|+++ ||||+|+|++|+++
T Consensus 80 ~~vl~G~i~p~~l~~Ms~e-------------EmAs~elk~~r~~~ 112 (113)
T 2lw4_A 80 RNVLCGAITPQQIAVMTSE-------------EMASDELKEIRKAM 112 (113)
T ss_dssp HHHHTTSSCHHHHHHSCHH-------------HHHCTTTTTCSSSC
T ss_pred HHHHcCCCCHHHHhcCCHH-------------HcCCHHHHHHHHHc
Confidence 9999999999999999999 99999999988754
No 4
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=190.35 Aligned_cols=107 Identities=53% Similarity=0.734 Sum_probs=91.2
Q ss_pred CCccCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCchhcHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHhcCCCCC
Q psy996 37 SVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKN 116 (221)
Q Consensus 37 ~~~~~pp~~~~~~~d~vR~k~~~lL~~aL~~~~d~~~~~~~~~~lA~~IE~~i~~~~~~~~~~Yk~k~Rsl~~nLk~~kN 116 (221)
.-|.||| .|.++|++|++|+++|++||..++++.+.+.++..+|.+||++||+.|+.++..|++++|+|+|||||++|
T Consensus 2 ~~~~~~~--~~~t~d~vR~k~~~lL~~aL~~~~d~~~~~~~~~~lA~~IE~~if~~~~~~~~~Yk~k~Rsl~fNLKd~kN 79 (108)
T 3ndq_A 2 IDPFTPR--APSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKN 79 (108)
T ss_dssp ------C--CCCCCCHHHHHHHHHHHHHTTGGGHHHHHTCCHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTCTTC
T ss_pred CCCCCCC--CCCCCChHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCC
Confidence 4578999 89999999999999999999987655444567899999999999999998889999999999999999999
Q ss_pred hhhhhccccCcCChhhhhcCChhhhhccCCCCchhHhhccHH
Q psy996 117 PMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDE 158 (221)
Q Consensus 117 ~~L~~~Il~G~isp~~l~~m~~q~Q~rsadep~t~fElas~e 158 (221)
|+|+++|++|.|+|++||.|+++ ||||+|
T Consensus 80 p~Lr~~vl~G~isp~~lv~Ms~e-------------EmAS~E 108 (108)
T 3ndq_A 80 PNLRKNVLCGNIPPDLFARMTAE-------------EMASDE 108 (108)
T ss_dssp HHHHHHHHHTSSCHHHHHHCCTT-------------TC----
T ss_pred HHHHHHHHcCCcCHHHHhCCCHH-------------HccCCC
Confidence 99999999999999999999999 999986
No 5
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-24 Score=170.37 Aligned_cols=105 Identities=30% Similarity=0.489 Sum_probs=93.4
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCC---CCchhcHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHhcCCCCChhhhhcccc
Q psy996 49 LTDSVRLKCREMLQNSIQVGDLD---MDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIF 125 (221)
Q Consensus 49 ~~d~vR~k~~~lL~~aL~~~~d~---~~~~~~~~~lA~~IE~~i~~~~~~~~~~Yk~k~Rsl~~nLk~~kN~~L~~~Il~ 125 (221)
++|.+|++|+++|+++|...... .....++..+|.+||.+||+.|+.++..|+.++|+|+|||||++||.|+.+|++
T Consensus 8 ~~d~~Rd~~r~~L~eaL~~~~~~~~~~~~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~~vl~ 87 (120)
T 2dme_A 8 SADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLK 87 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHc
Confidence 56899999999999999754221 112346789999999999999998888999999999999999999999999999
Q ss_pred CcCChhhhhcCChhhhhccCCCCchhHhhccHHHHHHHHHH
Q psy996 126 GAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKF 166 (221)
Q Consensus 126 G~isp~~l~~m~~q~Q~rsadep~t~fElas~e~k~~r~k~ 166 (221)
|.|+|++||.|+++ ||||+|+|+||++.
T Consensus 88 G~i~p~~lv~Ms~e-------------EmAS~elk~~r~~~ 115 (120)
T 2dme_A 88 GEVTPDHLIRMSPE-------------ELASKELAAWRRRS 115 (120)
T ss_dssp TSSCTTHHHHSCTT-------------TTTTCCSTTTCTTC
T ss_pred CCCCHHHHhcCCHH-------------HcCCHHHHHHHHHH
Confidence 99999999999999 99999999998764
No 6
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.60 E-value=5.1e-16 Score=104.93 Aligned_cols=40 Identities=70% Similarity=1.080 Sum_probs=37.4
Q ss_pred cCcccccccccccCCCceeEEEEeccCCCCCceEEEEeec
Q psy996 180 QGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFYI 219 (221)
Q Consensus 180 ~~~~T~~~~C~kC~~~~~~y~q~QtRsaDEpmT~f~~C~~ 219 (221)
+++.|+.+.|++||+++++|+|+|+||||||||+||.|.+
T Consensus 3 ~~~~t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~ 42 (50)
T 1tfi_A 3 GGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNE 42 (50)
T ss_dssp SCEECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESS
T ss_pred CCceeCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCC
Confidence 4678888999999999999999999999999999999974
No 7
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.37 E-value=3.1e-13 Score=93.03 Aligned_cols=37 Identities=30% Similarity=0.479 Sum_probs=33.7
Q ss_pred ccccccccccCCCceeEEEEeccCCCCCceEEEEeec
Q psy996 183 KTDLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFYI 219 (221)
Q Consensus 183 ~T~~~~C~kC~~~~~~y~q~QtRsaDEpmT~f~~C~~ 219 (221)
++..+.||+||+.+++|+|+|+||||||||+||.|..
T Consensus 12 ~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~ 48 (57)
T 1qyp_A 12 PTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTK 48 (57)
T ss_dssp CEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESS
T ss_pred CceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCC
Confidence 3346899999999999999999999999999999974
No 8
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.24 E-value=3.2e-12 Score=99.44 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=33.1
Q ss_pred cccccccccCCCceeEEEEeccCCCCCceEEEEeec
Q psy996 184 TDLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFYI 219 (221)
Q Consensus 184 T~~~~C~kC~~~~~~y~q~QtRsaDEpmT~f~~C~~ 219 (221)
+..+.|++||+++++|+|+|+||||||||+||.|.+
T Consensus 70 ~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~ 105 (113)
T 3h0g_I 70 RSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVH 105 (113)
T ss_dssp BCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESS
T ss_pred CcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCC
Confidence 334899999999999999999999999999999964
No 9
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=99.23 E-value=4.6e-12 Score=99.77 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=32.8
Q ss_pred ccccccccCCCceeEEEEeccCCCCCceEEEEeec
Q psy996 185 DLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFYI 219 (221)
Q Consensus 185 ~~~~C~kC~~~~~~y~q~QtRsaDEpmT~f~~C~~ 219 (221)
..+.|++||+++++|+|+|+||||||||+||+|.+
T Consensus 71 t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~ 105 (122)
T 1twf_I 71 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLS 105 (122)
T ss_dssp CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETT
T ss_pred cCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCC
Confidence 35799999999999999999999999999999974
No 10
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.4e-12 Score=101.02 Aligned_cols=35 Identities=43% Similarity=0.604 Sum_probs=0.0
Q ss_pred ccccccccCCCceeEEEEeccCCCCCceEEEEeec
Q psy996 185 DLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFYI 219 (221)
Q Consensus 185 ~~~~C~kC~~~~~~y~q~QtRsaDEpmT~f~~C~~ 219 (221)
..+.|++||+++++|+|+|+||||||||+||.|..
T Consensus 91 t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~ 125 (133)
T 3qt1_I 91 SDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVN 125 (133)
T ss_dssp -----------------------------------
T ss_pred ccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCC
Confidence 35799999999999999999999999999999964
No 11
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=96.00 E-value=0.00071 Score=45.11 Aligned_cols=18 Identities=72% Similarity=0.888 Sum_probs=14.8
Q ss_pred CChhhhhccCCCCchhHh
Q psy996 136 MTAEVQTRSADEPMTTFE 153 (221)
Q Consensus 136 m~~q~Q~rsadep~t~fE 153 (221)
...++|+||||||||+|.
T Consensus 21 ~f~q~Q~RsaDE~mT~Fy 38 (50)
T 1tfi_A 21 TYTQVQTRSADEPMTTFV 38 (50)
T ss_dssp EEEEECSSSSSSCCEEEE
T ss_pred EEEEecCcCCCCCceEEE
Confidence 345689999999999964
No 12
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=94.45 E-value=0.01 Score=49.06 Aligned_cols=30 Identities=37% Similarity=0.511 Sum_probs=21.9
Q ss_pred ccccCcCChhhhhcCChhhhhccCCCCchhHh
Q psy996 122 NYIFGAISASKLATMTAEVQTRSADEPMTTFE 153 (221)
Q Consensus 122 ~Il~G~isp~~l~~m~~q~Q~rsadep~t~fE 153 (221)
.+.++++.-.++ .+.|+|+||||||||+|.
T Consensus 137 ~~~Cp~C~~~~a--~~~q~Q~rsaDE~mt~f~ 166 (178)
T 3po3_S 137 RFTCGKCKEKKV--SYYQLQTRSAAAPLTTFC 166 (178)
T ss_dssp SSCCSSSCCSCE--ECCCCCCSCTTSCCCCCE
T ss_pred CcCCCCCCCCce--EEEEeecccCCCCCcEEE
Confidence 445666655555 456889999999999953
No 13
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=94.40 E-value=0.01 Score=45.55 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.7
Q ss_pred ChhhhhccCCCCchhH
Q psy996 137 TAEVQTRSADEPMTTF 152 (221)
Q Consensus 137 ~~q~Q~rsadep~t~f 152 (221)
+.++|+||||||||+|
T Consensus 85 ~~q~q~rsade~mt~f 100 (113)
T 3h0g_I 85 FYQTHSRRGDTMMTLI 100 (113)
T ss_dssp EECCCCSSCCCCCCCE
T ss_pred EEEEecccCCCCCeeE
Confidence 3458999999999995
No 14
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=94.18 E-value=0.0064 Score=40.98 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=18.7
Q ss_pred cccCcCChhhhhcCChhhhhccCCCCchhH
Q psy996 123 YIFGAISASKLATMTAEVQTRSADEPMTTF 152 (221)
Q Consensus 123 Il~G~isp~~l~~m~~q~Q~rsadep~t~f 152 (221)
+.+.+..-.++ ...++|+||||||||.|
T Consensus 16 ~~Cp~Cg~~~~--~~~q~Q~rsadep~T~f 43 (57)
T 1qyp_A 16 ITCPKCGNDTA--YWWEMQTRAGDEPSTIF 43 (57)
T ss_dssp CCCTTTCCSEE--EEEEECCSSSSCSSEEE
T ss_pred eECCCCCCCEE--EEEEeecccCCCCCcEE
Confidence 34444443333 44578999999999984
No 15
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=93.49 E-value=0.014 Score=52.03 Aligned_cols=28 Identities=46% Similarity=0.681 Sum_probs=19.6
Q ss_pred cccCcCChhhhhcCChhhhhccCCCCchhH
Q psy996 123 YIFGAISASKLATMTAEVQTRSADEPMTTF 152 (221)
Q Consensus 123 Il~G~isp~~l~~m~~q~Q~rsadep~t~f 152 (221)
+.|+.+.-.++ .+.++|+||||||||+|
T Consensus 269 ~~C~~C~~~~~--~~~q~Q~rsaDe~~t~f 296 (309)
T 1pqv_S 269 FTCGKCKEKKV--SYYQLQTRSADEPLTTF 296 (309)
T ss_pred ccCCCCCCCee--EEEEeecccCCCCCcEE
Confidence 34444444444 45679999999999995
No 16
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=93.35 E-value=0.015 Score=46.12 Aligned_cols=21 Identities=52% Similarity=0.610 Sum_probs=0.0
Q ss_pred CChhhhhccCCCCchhHhhcc
Q psy996 136 MTAEVQTRSADEPMTTFEMAN 156 (221)
Q Consensus 136 m~~q~Q~rsadep~t~fElas 156 (221)
.+.|+|+||||||||+|..+.
T Consensus 104 ~f~q~Q~RsaDE~mT~fy~C~ 124 (133)
T 3qt1_I 104 VFFQLQIRSADEPMTTFYKCV 124 (133)
T ss_dssp ---------------------
T ss_pred EEEEEeeecCCCCCcEEEEcC
Confidence 556799999999999987764
No 17
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=92.34 E-value=0.019 Score=44.49 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.1
Q ss_pred CChhhhhccCCCCchhH
Q psy996 136 MTAEVQTRSADEPMTTF 152 (221)
Q Consensus 136 m~~q~Q~rsadep~t~f 152 (221)
.+.++|+||||||||+|
T Consensus 84 ~~~q~q~rsade~~t~f 100 (122)
T 1twf_I 84 VFFQSQQRRKDTSMVLF 100 (122)
T ss_dssp EEEECSSCCTTCCCCEE
T ss_pred EEEEecCccCCCCceEE
Confidence 34458999999999995
No 18
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=72.45 E-value=11 Score=27.14 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=49.1
Q ss_pred CCCCccCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCc----hhcHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHh
Q psy996 35 KPSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDG----LASLEELATELEEAIYNEFKNTDNRYKNRVRSRIAN 110 (221)
Q Consensus 35 ~~~~~~~pp~~~~~~~d~vR~k~~~lL~~aL~~~~d~~~~----~~~~~~lA~~IE~~i~~~~~~~~~~Yk~k~Rsl~~n 110 (221)
..|...++ ...|+..+.-|..++-..-+.... -.++...|..+|..+|....+ ...|-.-+-..+..
T Consensus 4 ~~W~~~vt--------~~lR~hlv~Klv~aI~P~pdp~a~~d~rm~~l~~yArkvE~~~ye~A~s-rdeYY~llA~kiyk 74 (81)
T 1kdx_A 4 KGWHEHVT--------QDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANS-RDEYYHLLAEKIYK 74 (81)
T ss_dssp TTGGGGSC--------HHHHHHHHHHHHHHHSCCSSGGGGGSHHHHHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHH
T ss_pred hHHHHHcC--------HHHHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence 35655665 679999999999998875432221 124678899999999988654 46787777777776
Q ss_pred cC
Q psy996 111 LK 112 (221)
Q Consensus 111 Lk 112 (221)
+.
T Consensus 75 iq 76 (81)
T 1kdx_A 75 IQ 76 (81)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 19
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=65.12 E-value=11 Score=27.12 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=45.0
Q ss_pred CcHHHHHHHHHHHHHhhcC----CCCCCchhcHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHhcC
Q psy996 50 TDSVRLKCREMLQNSIQVG----DLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLK 112 (221)
Q Consensus 50 ~d~vR~k~~~lL~~aL~~~----~d~~~~~~~~~~lA~~IE~~i~~~~~~~~~~Yk~k~Rsl~~nLk 112 (221)
...-|.+.+.-|...|..- +...........-|.+.|.+||.+.+. ...|-+.+|..+...+
T Consensus 8 s~~ERsknv~eL~qiLmDIn~iNGG~~~~~EKlk~~A~~FEaaLyaksSS-K~eYmdsMr~ki~aMr 73 (85)
T 2k0n_A 8 SNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKSSS-KKEYMDSMNEKVAVMR 73 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHSCCS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHH
Confidence 3567888888888888752 112223445677899999999998655 4789999999887664
No 20
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=35.17 E-value=10 Score=23.53 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=10.7
Q ss_pred cccccccccccCCC
Q psy996 182 TKTDLLKCGKCKKR 195 (221)
Q Consensus 182 ~~T~~~~C~kC~~~ 195 (221)
...+.+.|++||..
T Consensus 5 ~~~~~~~C~~C~~~ 18 (39)
T 2i5o_A 5 AAEDQVPCEKCGSL 18 (39)
T ss_dssp -CCCEEECTTTCCE
T ss_pred CcCCCcccccccCc
Confidence 45677899999975
No 21
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=33.39 E-value=56 Score=24.14 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=35.1
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCchhcHHHHHHHHHHHHHHHhcCCChhhh
Q psy996 39 TQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYK 101 (221)
Q Consensus 39 ~~~pp~~~~~~~d~vR~k~~~lL~~aL~~~~d~~~~~~~~~~lA~~IE~~i~~~~~~~~~~Yk 101 (221)
..||+ +.++.-+.+.|...|.... +. ...+..++..|-+.|-+.....+.+||
T Consensus 11 ~~f~~-------~~v~~ii~~~l~~~L~~~~-Y~--~~~~~~~~~~i~~~i~~~lk~l~~~YK 63 (114)
T 1xdx_A 11 AAFVA-------DDVSNIIKESIDAVLQNQQ-YS--EAKVSQWTSSCLEHCIKRLTALNKPFK 63 (114)
T ss_dssp CSCCC-------HHHHHHHHHHHHHHHHSSC-CC--HHHHHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred CCCCH-------HHHHHHHHHHHHHhhCCCC-cC--HHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 35776 8999999999999998644 33 235567777777777665543223343
No 22
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Probab=28.74 E-value=21 Score=28.35 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=10.6
Q ss_pred eeeeecCCCCCCC
Q psy996 3 FIFLFPAPPGISN 15 (221)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (221)
-++|.|||+|.|.
T Consensus 93 ~V~l~Pap~GtGi 105 (150)
T 1pkp_A 93 EIILKPASEGTGV 105 (150)
T ss_dssp EEEEEECCTTCCE
T ss_pred EEEEEECCCCCcc
Confidence 3689999999874
No 23
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Probab=26.11 E-value=25 Score=28.35 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=11.1
Q ss_pred eeeeecCCCCCCCC
Q psy996 3 FIFLFPAPPGISNN 16 (221)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (221)
-++|.|||+|.|.-
T Consensus 88 ~V~l~Pap~GtGii 101 (162)
T 2vqe_E 88 KIVLKPAAPGTGVI 101 (162)
T ss_dssp EEEEEECCTTSCEE
T ss_pred EEEEEECCCCccee
Confidence 36899999998853
No 24
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=24.67 E-value=1.1e+02 Score=22.32 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=36.6
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCchhcHHHHHHHHHHHHHHHhcCCChhhhh
Q psy996 40 QYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKN 102 (221)
Q Consensus 40 ~~pp~~~~~~~d~vR~k~~~lL~~aL~~~~d~~~~~~~~~~lA~~IE~~i~~~~~~~~~~Yk~ 102 (221)
.||+ +.++.-+.+.|...|.... +. ...+..++..|-+.|-......+.+||.
T Consensus 9 ~F~~-------~~v~~ii~~~l~~~L~~~~-Y~--~~~~~~~~~~i~~~i~~~lk~l~~~YK~ 61 (111)
T 1ygt_A 9 QFIV-------DDVSKTIKEAIETTIGGNA-YQ--HDKVNNWTGQVVENCLTVLTKEQKPYKY 61 (111)
T ss_dssp CCCC-------CHHHHHHHHHHHHHHTTCC-CC--HHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred CCCH-------HHHHHHHHHHHHHhhCCCC-cC--HHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence 5776 7899999999999987543 32 3356777888877777766554334543
No 25
>3r8n_E 30S ribosomal protein S5; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_E 3fih_E* 3iy8_E 3j18_E* 2wwl_E 3oar_E 3oaq_E 3ofb_E 3ofa_E 3ofp_E 3ofx_E 3ofy_E 3ofo_E 3r8o_E 4a2i_E 4gd1_E 4gd2_E 2qal_E* 1p6g_E 1p87_E ...
Probab=23.56 E-value=31 Score=27.39 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=11.7
Q ss_pred eeeeecCCCCCCCCC
Q psy996 3 FIFLFPAPPGISNNK 17 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (221)
-++|.|||+|-|.--
T Consensus 84 ~V~l~Pap~GtGiia 98 (150)
T 3r8n_E 84 RVFMQPASEGTGIIA 98 (150)
T ss_dssp EEEEECCCCSSCCBS
T ss_pred EEEEEcCCCcCceec
Confidence 368999999988643
No 26
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=23.55 E-value=67 Score=22.82 Aligned_cols=57 Identities=12% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCchhcHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHhcC
Q psy996 49 LTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLK 112 (221)
Q Consensus 49 ~~d~vR~k~~~lL~~aL~~~~d~~~~~~~~~~lA~~IE~~i~~~~~~~~~~Yk~k~Rsl~~nLk 112 (221)
.....|.+++.-|-+++....-.. ..-|.++|+.+|.+... ...|-.-+=.++..++
T Consensus 10 ~s~~FRq~vi~~i~~a~~~~G~~~------~k~a~emEnhvF~Ka~t-kdEYL~lvarli~h~r 66 (77)
T 2gut_A 10 RSTAFRQKLVSQIEDAMRKAGVAH------SKSSKDMESHVFLKAKT-RDEYLSLVARLIIHFR 66 (77)
T ss_dssp TSHHHHHHHHHHHHHHHHHHCCCC------SSCHHHHHHHHHHHCSS-HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhHHHHHHhCCCC------CCCHHHHHHHHHhccCc-ccchHHHHHHHHHHHH
Confidence 346889999999999998743211 24578999999998754 4678777766666654
No 27
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=22.38 E-value=18 Score=27.07 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=21.9
Q ss_pred cccccccCCCceeEEEEeccCCCCCceEEEEee
Q psy996 186 LLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFY 218 (221)
Q Consensus 186 ~~~C~kC~~~~~~y~q~QtRsaDEpmT~f~~C~ 218 (221)
.|+|..|+.|...-+- +-|=+--++|++|-
T Consensus 13 ~FTC~~C~tRs~k~iS---k~aY~~GvViv~C~ 42 (100)
T 2e2z_A 13 AFTCKKCNTRSSHTMS---KQAYEKGTVLISCP 42 (100)
T ss_dssp EEEETTTTEEEEEEEE---HHHHHTSEEEEECT
T ss_pred EEEccCCCCcchhhcC---HHHhhCCEEEEEcC
Confidence 6999999988865543 33556678888884
No 28
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E*
Probab=21.92 E-value=34 Score=27.68 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=10.9
Q ss_pred eeeecCCCCCCCC
Q psy996 4 IFLFPAPPGISNN 16 (221)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (221)
++|.|||+|.|.-
T Consensus 94 V~l~Pap~GtGii 106 (167)
T 3i1m_E 94 VFMQPASEGTGII 106 (167)
T ss_dssp EEEECCCCSSSCB
T ss_pred EEEEcCCCcccee
Confidence 6899999998863
No 29
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=21.53 E-value=42 Score=25.92 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=11.3
Q ss_pred cccccccCCCceeE
Q psy996 186 LLKCGKCKKRNCTY 199 (221)
Q Consensus 186 ~~~C~kC~~~~~~y 199 (221)
-+.||.||+.+...
T Consensus 107 ~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 107 FLACPKCGSHDFEV 120 (139)
T ss_dssp GCSCSSSSCCCEEE
T ss_pred CCcCccccCCccEE
Confidence 46899999998654
No 30
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=20.62 E-value=34 Score=27.69 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=27.8
Q ss_pred ccccccccccCCC-ceeE-EEEeccCCCCCceEEEEeec
Q psy996 183 KTDLLKCGKCKKR-NCTY-NQVQTRSADEPMTTLHHFYI 219 (221)
Q Consensus 183 ~T~~~~C~kC~~~-~~~y-~q~QtRsaDEpmT~f~~C~~ 219 (221)
..+.+.|.+|+.. .+.| +-+...-+|.--++.++|.+
T Consensus 56 ~~g~~~CekC~~~~~~~~RYil~~~i~D~TG~~wvt~F~ 94 (172)
T 3u50_C 56 HGDSFFCESCQQFINPQVHLMLRAFVQDSTGTIPVMIFD 94 (172)
T ss_dssp TTTEEEETTTTEECCCEEEECEEEEEEETTEEEEEEECH
T ss_pred CCCeEECCCCCCCCCceEEEEEEEEEEeCCCCEEEEEEh
Confidence 4578999999984 7767 55666678887778888764
Done!