Your job contains 1 sequence.
>psy996
MNFIFLFPAPPGISNNKDSSSKKKEAKEEKKEDKKPSVTQYPPQKSHNLTDSVRLKCREM
LQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLS
RNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDDAQLATVQ
GTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFYITV
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy996
(221 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 490 8.8e-47 1
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 411 2.1e-38 1
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 398 4.9e-37 1
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 398 4.9e-37 1
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 390 3.5e-36 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 390 3.5e-36 1
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 390 3.5e-36 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 390 3.5e-36 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 390 3.5e-36 1
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 390 3.5e-36 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 388 5.7e-36 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 387 7.2e-36 1
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 387 7.2e-36 1
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 387 7.2e-36 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 387 7.2e-36 1
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 386 9.2e-36 1
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 382 2.4e-35 1
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 381 3.1e-35 1
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 378 6.5e-35 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 372 2.8e-34 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 370 4.6e-34 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 365 1.5e-33 1
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 362 3.2e-33 1
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 353 2.9e-32 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 353 2.9e-32 1
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 352 3.7e-32 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 345 2.0e-31 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 332 4.9e-30 1
WB|WBGene00012000 - symbol:T24H10.1 species:6239 "Caenorh... 319 1.2e-28 1
FB|FBgn0030663 - symbol:CG8117 species:7227 "Drosophila m... 314 3.9e-28 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 313 5.0e-28 1
UNIPROTKB|I3L6H4 - symbol:I3L6H4 "Uncharacterized protein... 302 7.3e-27 1
UNIPROTKB|B7Z4S1 - symbol:TCEA1 "Transcription elongation... 218 5.8e-18 1
POMBASE|SPAC20H4.03c - symbol:tfs1 "transcription elongat... 213 2.0e-17 1
DICTYBASE|DDB_G0278241 - symbol:tcea1 "RNA polymerase II ... 181 4.1e-17 2
RGD|1584894 - symbol:Tceanc "transcription elongation fac... 207 2.0e-16 1
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 205 4.2e-16 1
UNIPROTKB|E1BRR3 - symbol:TCEANC "Uncharacterized protein... 192 9.8e-15 1
CGD|CAL0002729 - symbol:orf19.4537 species:5476 "Candida ... 185 3.0e-14 1
UNIPROTKB|F1LV22 - symbol:F1LV22 "Uncharacterized protein... 177 1.6e-13 1
UNIPROTKB|H0YF26 - symbol:TCEANC "Transcription elongatio... 176 1.6e-13 1
UNIPROTKB|Q8N8B7 - symbol:TCEANC "Transcription elongatio... 176 5.5e-13 1
MGI|MGI:2685236 - symbol:Tceanc "transcription elongation... 176 5.9e-13 1
ASPGD|ASPL0000075205 - symbol:AN4861 species:162425 "Emer... 171 1.2e-12 1
UNIPROTKB|E2QWP2 - symbol:TCEANC "Uncharacterized protein... 172 1.5e-12 1
UNIPROTKB|A0JNK7 - symbol:LOC504389 "Uncharacterized prot... 166 8.6e-12 1
UNIPROTKB|F1SRI2 - symbol:TCEANC "Uncharacterized protein... 157 7.1e-11 1
SGD|S000003011 - symbol:DST1 "General transcription elong... 155 8.1e-11 1
UNIPROTKB|G3N3C0 - symbol:G3N3C0 "Uncharacterized protein... 157 8.4e-11 1
GENEDB_PFALCIPARUM|PF07_0057 - symbol:PF07_0057 "transcri... 153 2.6e-10 1
UNIPROTKB|Q8IBV2 - symbol:PF07_0057 "Transcription elonga... 153 2.6e-10 1
MGI|MGI:1344352 - symbol:Dido1 "death inducer-obliterator... 124 5.4e-05 1
UNIPROTKB|F1NFF0 - symbol:Gga.41084 "Uncharacterized prot... 122 0.00010 1
UNIPROTKB|F1NGH5 - symbol:Gga.41084 "Uncharacterized prot... 122 0.00011 1
UNIPROTKB|E2QZU0 - symbol:POLR3K "DNA-directed RNA polyme... 88 0.00068 1
UNIPROTKB|Q9Y2Y1 - symbol:POLR3K "DNA-directed RNA polyme... 88 0.00068 1
UNIPROTKB|E1BVY1 - symbol:PHF3 "Uncharacterized protein" ... 115 0.00079 1
UNIPROTKB|F1N3E8 - symbol:POLR3K "DNA-directed RNA polyme... 87 0.00089 1
UNIPROTKB|F2Z4X7 - symbol:POLR3K "DNA-directed RNA polyme... 87 0.00089 1
MGI|MGI:1914255 - symbol:Polr3k "polymerase (RNA) III (DN... 87 0.00089 1
UNIPROTKB|Q5FVH1 - symbol:Polr3k "DNA-directed RNA polyme... 87 0.00089 1
UNIPROTKB|E7ER40 - symbol:PHF3 "PHD finger protein 3" spe... 111 0.00092 1
UNIPROTKB|F1PLS2 - symbol:DIDO1 "Uncharacterized protein"... 113 0.00099 1
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 99/168 (58%), Positives = 123/168 (73%)
Query: 46 SHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVR 105
S +TD+VR+KCREML ++++G++ +G IY+EF NTD +YKNR+R
Sbjct: 146 SGGMTDAVRIKCREMLATALKIGEVP-EGCGEPEEMAAELEDAIYSEFNNTDMKYKNRIR 204
Query: 106 SRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNK 165
SR+ANLKDPKNP L N++ GA++A +LA MT E EMA+DEMK LR K
Sbjct: 205 SRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPE-------------EMASDEMKKLREK 251
Query: 166 FIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
F+KE+I+DAQLATVQGTKTDLLKC KCKKRNCTYNQ+QTRSADEPMTT
Sbjct: 252 FVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTT 299
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 89/176 (50%), Positives = 112/176 (63%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTD 97
+ +P ++ +DSVR+KCREML N++Q GD + I+ EFKNTD
Sbjct: 135 IATFP--RAPGTSDSVRIKCREMLSNALQTGDDYITIGSDCDELGAQIEECIFLEFKNTD 192
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L RN + G +S ++A MTAE EMA+D
Sbjct: 193 MKYKNRVRSRISNLKDAKNPNLRRNVLCGNVSPDRIAKMTAE-------------EMASD 239
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
E+K +R KE+I D Q+AT GT+TDL CGKCKK+ CTY QVQTRSADEPMTT
Sbjct: 240 ELKEMRKNLTKEAIRDHQVATSGGTQTDLFTCGKCKKKKCTYTQVQTRSADEPMTT 295
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 87/176 (49%), Positives = 109/176 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTD 97
+ +P ++ + +DSVR+KCREML +++ GD D I+ E KNTD
Sbjct: 107 IPSFP--RAPSTSDSVRVKCREMLSAALRTGD-DYIAIGADEEELETIHTPIFQELKNTD 163
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRIANLKD KNP L +N + G I K A MTAE EMA+D
Sbjct: 164 MKYKNRVRSRIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAE-------------EMASD 210
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 211 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT 266
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 87/163 (53%), Positives = 106/163 (65%)
Query: 51 DSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRSRIAN 110
DS+R KC EML +++ D D IY E K TD +YKNRVRSRI+N
Sbjct: 246 DSIRDKCIEMLTAALRTDDDYKDYGTNCEAMGAEIEDYIYQETKATDMKYKNRVRSRISN 305
Query: 111 LKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKES 170
LKDPKNP L +N + GAI S++A+MTAE EMA+DE+K LRN +E+
Sbjct: 306 LKDPKNPNLRKNVLAGAIELSRIASMTAE-------------EMASDELKQLRNVLTQEA 352
Query: 171 IDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
I + Q+A GT TDLL+CGKCKK+NCTYNQVQTRSADEPMTT
Sbjct: 353 IREHQMAKTGGTTTDLLQCGKCKKKNCTYNQVQTRSADEPMTT 395
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 86/176 (48%), Positives = 109/176 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTD 97
V+ +P ++ + +DSVRLKCREML +++ GD + IY E +NTD
Sbjct: 106 VSSFP--RAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTD 163
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L +N + G I A MTAE EMA+D
Sbjct: 164 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASD 210
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 211 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT 266
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 86/176 (48%), Positives = 109/176 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTD 97
V+ +P ++ + +DSVRLKCREML +++ GD + IY E +NTD
Sbjct: 127 VSSFP--RAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTD 184
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L +N + G I A MTAE EMA+D
Sbjct: 185 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASD 231
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 232 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT 287
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 86/176 (48%), Positives = 109/176 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTD 97
V+ +P ++ + +DSVRLKCREML +++ GD + IY E +NTD
Sbjct: 127 VSSFP--RAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTD 184
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L +N + G I A MTAE EMA+D
Sbjct: 185 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASD 231
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 232 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT 287
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 86/176 (48%), Positives = 109/176 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTD 97
V+ +P ++ + +DSVRLKCREML +++ GD + IY E +NTD
Sbjct: 127 VSSFP--RAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTD 184
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L +N + G I A MTAE EMA+D
Sbjct: 185 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASD 231
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 232 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT 287
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 86/176 (48%), Positives = 109/176 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTD 97
V+ +P ++ + +DSVRLKCREML +++ GD + IY E +NTD
Sbjct: 127 VSSFP--RAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTD 184
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L +N + G I A MTAE EMA+D
Sbjct: 185 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASD 231
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 232 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT 287
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 86/176 (48%), Positives = 109/176 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTD 97
V+ +P ++ + +DSVRLKCREML +++ GD + IY E +NTD
Sbjct: 127 VSSFP--RAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTD 184
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L +N + G I A MTAE EMA+D
Sbjct: 185 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASD 231
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 232 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT 287
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 89/178 (50%), Positives = 109/178 (61%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
PSV P + DSVR KC EML +++ D D IY E K+
Sbjct: 173 PSVCLLAP--CYLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKS 230
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +Y+NRVRSRI+NLKDP+NP L RN + GAISA +A MTAE EMA
Sbjct: 231 TDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE-------------EMA 277
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+DE++ LRN +E+I + Q+A GT TDL +C KCKK+NCTYNQVQTRSADEPMTT
Sbjct: 278 SDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTT 335
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 87/180 (48%), Positives = 110/180 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGD----LDMDGXXXXXXXXXXXXXXIYNEF 93
+ +P ++ + +DSVR+KCREML +++ GD + D I+ E
Sbjct: 132 IPSFP--RAPSTSDSVRVKCREMLSAALRTGDDYIAIGAD-EEELGSQIEEAKAPIFQEL 188
Query: 94 KNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFE 153
KNTD +YKNRVRSRIANLKD KNP L +N + G I K A MTAE E
Sbjct: 189 KNTDMKYKNRVRSRIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAE-------------E 235
Query: 154 MANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
MA+DE+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 236 MASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT 295
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 85/163 (52%), Positives = 104/163 (63%)
Query: 51 DSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRSRIAN 110
DSVR KC EML +++ D D IY E K+TD +Y+NRVRSRI+N
Sbjct: 185 DSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISN 244
Query: 111 LKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKES 170
LKDP+NP L RN + GAISA +A MTAE EMA+DE++ LRN +E+
Sbjct: 245 LKDPRNPGLRRNVLSGAISAGLIAKMTAE-------------EMASDELRELRNAMTQEA 291
Query: 171 IDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
I + Q+A GT TDL +C KCKK+NCTYNQVQTRSADEPMTT
Sbjct: 292 IREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTT 334
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 85/163 (52%), Positives = 104/163 (63%)
Query: 51 DSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRSRIAN 110
DSVR KC EML +++ D D IY E K+TD +Y+NRVRSRI+N
Sbjct: 184 DSVRDKCVEMLSAALKAEDNFKDYGVNCDKLASEIEDHIYQELKSTDMKYRNRVRSRISN 243
Query: 111 LKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKES 170
LKDP+NP L RN + GAIS +A MTAE EMA+DE++ LRN +E+
Sbjct: 244 LKDPRNPGLRRNVLSGAISPELIAKMTAE-------------EMASDELRELRNAMTQEA 290
Query: 171 IDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
I + Q+A GT TDLL+C KCKK+NCTYNQVQTRSADEPMTT
Sbjct: 291 IREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTT 333
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 89/179 (49%), Positives = 109/179 (60%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQV-GDLDMDGXXXXXXXXXXXXXXIYNEFK 94
P T +PP TDSVR KCRE+L ++Q GD G IY EFK
Sbjct: 125 PKFTMFPPAPV--TTDSVRTKCRELLVAALQTDGDHQTIGADCEHMAAQIEDY-IYQEFK 181
Query: 95 NTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEM 154
+TD +YK R+RSRI+NLKD KNP L RN + G IS ++A+MTAE EM
Sbjct: 182 STDMKYKTRLRSRISNLKDQKNPDLRRNVLCGNISPERIASMTAE-------------EM 228
Query: 155 ANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
A+ E+K +R KESI + QL+ V GT+TD+ CGKCK +NCTY QVQTRSADEPMTT
Sbjct: 229 ASPELKEIRKALTKESIREHQLSKVGGTETDMFVCGKCKGKNCTYTQVQTRSADEPMTT 287
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 85/176 (48%), Positives = 109/176 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTD 97
V+ +P ++ + +DSVRLKCREML +++ G+ + IY E +NTD
Sbjct: 126 VSSFP--RAPSTSDSVRLKCREMLAAALRTGEDYIAIGADEEELGSQIEEAIYQEIRNTD 183
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
+YKNRVRSRI+NLKD KNP L +N + G I A MTAE EMA+D
Sbjct: 184 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASD 230
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 231 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT 286
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 84/163 (51%), Positives = 103/163 (63%)
Query: 51 DSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRSRIAN 110
DSVR KC EML +++ D D IY E K+TD +Y+NRVRSRI+N
Sbjct: 185 DSVRDKCVEMLSAALKAEDDFKDYGVNCDKLASEIEDHIYQELKSTDMKYRNRVRSRISN 244
Query: 111 LKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKES 170
LKDP+NP L RN + G IS +A MTAE EMA+DE++ LRN +E+
Sbjct: 245 LKDPRNPGLRRNVLSGTISPELIAKMTAE-------------EMASDELRELRNAMTQEA 291
Query: 171 IDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
I + Q+A GT TDLL+C KCKK+NCTYNQVQTRSADEPMTT
Sbjct: 292 IREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTT 334
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 88/178 (49%), Positives = 108/178 (60%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
PSV P + DSVR KC EML +++ D D I E K+
Sbjct: 172 PSVCLLAP--CYLTGDSVRDKCVEMLSAALKAEDDYKDYGVNCDKMASEIEDHILEELKS 229
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +Y+NRVRSRI+NLKDP+NP L RN + GAISA +A MTAE EMA
Sbjct: 230 TDMKYRNRVRSRISNLKDPRNPSLRRNVLSGAISAGLIAKMTAE-------------EMA 276
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+DE++ LRN +E+I + Q+A GT TDL +C KCKK+NCTYNQVQTRSADEPMTT
Sbjct: 277 SDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTT 334
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 82/176 (46%), Positives = 107/176 (60%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P +T +PP D+VR KCREML ++Q D + IY + KN
Sbjct: 152 PKITTFPPAPV--TCDAVRNKCREMLTTALQADDDYIAIGADCEHIAAQIEECIYQDIKN 209
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +YKNRVRSRI+NLKD KNP L +N + GAI+ ++A MT+E EMA
Sbjct: 210 TDMKYKNRVRSRISNLKDSKNPELKKNVLCGAITPEQIAVMTSE-------------EMA 256
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPM 211
++E+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRS+DEPM
Sbjct: 257 SNELKEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSSDEPM 312
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 87/178 (48%), Positives = 108/178 (60%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
PSV P + DSVR KC EML +++ D D IY E K+
Sbjct: 173 PSVCLLAP--CYLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKS 230
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +Y+NRVRSRI+NLKDP+NP L RN + GAISA +A MTAE EMA
Sbjct: 231 TDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE-------------EMA 277
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+DE++ LRN +E+I + Q+A GT TDL +C KCKK+NCTYNQVQTR+ DEPMTT
Sbjct: 278 SDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRT-DEPMTT 334
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 82/178 (46%), Positives = 107/178 (60%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P +T +PP D+VR KCREML ++Q + I+ + N
Sbjct: 123 PRITTFPPVPV--TCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN 180
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +YKNRVRSRI+NLKD KNP L RN + GAI+ ++A MT+E EMA
Sbjct: 181 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSE-------------EMA 227
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+DE+K +R KE+I + Q+A GT+TDL CGKC+K+NCTY QVQTRS+DEPMTT
Sbjct: 228 SDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTT 285
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 80/178 (44%), Positives = 106/178 (59%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P +T +PP D+VR KCREML ++Q M I+ + N
Sbjct: 100 PRITTFPPVPV--TCDAVRNKCREMLTAALQTDHDHMAVGADCEGLSAQIEECIFRDVGN 157
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +YKNRVRSRI+NLKD KNP L RN + G I+ ++A MT+E EMA
Sbjct: 158 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGVITPQQIAVMTSE-------------EMA 204
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+DE+K +R KE+I + Q+A GT+TDL CG+C+++NCTY QVQTRS+DEPMTT
Sbjct: 205 SDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGRCRRKNCTYTQVQTRSSDEPMTT 262
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 80/178 (44%), Positives = 106/178 (59%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P +T +PP D+VR KCREML ++Q + I+ + N
Sbjct: 124 PRITTFPPVPV--TCDAVRTKCREMLTAALQTDHDHVAIGADCECLAGQIEECIFRDVGN 181
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +YKNRVRSR++NLKD KNP L R + GAI+ ++A MT+E EMA
Sbjct: 182 TDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSE-------------EMA 228
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+DE+K +R KE+I + Q+A GT+TDL CGKC+K+NCTY QVQTRS+DEPMTT
Sbjct: 229 SDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTT 286
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 80/178 (44%), Positives = 105/178 (58%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P +T +P D+VR KCREML ++Q + I+ + N
Sbjct: 123 PRITTFPQVPI--TCDAVRNKCREMLTLALQTDHDHVAVGVSCEHLSSQIEECIFLDVGN 180
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +YKNRVRSRI+NLKD KNP L RN + GAI+ ++A MT+E EMA
Sbjct: 181 TDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSE-------------EMA 227
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+DE+K +R KE+I + Q+A GT+TDL C KC+K+NCTY QVQTRS+DEPMTT
Sbjct: 228 SDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTT 285
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 80/178 (44%), Positives = 105/178 (58%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P +T +P D+VR KCREML ++Q + I+ + N
Sbjct: 123 PRITTFPQVPI--TCDAVRNKCREMLTLALQTDHDHVAVGVSCEHLSSQIEECIFLDVGN 180
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +YKNRVRSRI+NLKD KNP L RN + GAI+ ++A MT+E EMA
Sbjct: 181 TDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSE-------------EMA 227
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+DE+K +R KE+I + Q+A GT+TDL C KC+K+NCTY QVQTRS+DEPMTT
Sbjct: 228 SDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTT 285
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 80/178 (44%), Positives = 105/178 (58%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P +T +P D+VR KCREML ++Q + I+ + N
Sbjct: 123 PRITTFPQVPI--TCDAVRNKCREMLTLALQTDHDHVAVGVNCEHLSSQIEECIFLDVGN 180
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +YKNRVRSRI+NLKD KNP L RN + GAI+ ++A MT+E EMA
Sbjct: 181 TDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSE-------------EMA 227
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+DE+K +R KE+I + Q+A GT+TDL C KC+K+NCTY QVQTRS+DEPMTT
Sbjct: 228 SDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTT 285
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 80/180 (44%), Positives = 105/180 (58%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVG-DLDMDGXXXXXXXXXXXXXXIYNEFK 94
P +T +PP D+VR KCREML ++Q D G ++
Sbjct: 125 PRITTFPPVPV--TCDAVRTKCREMLTAALQTDHDHVAIGADCECLAGQIEEYILWQGVG 182
Query: 95 -NTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFE 153
TD +YKNRVRSR++NLKD KNP L R + GAI+ ++A MT+E E
Sbjct: 183 FGTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSE-------------E 229
Query: 154 MANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
MA+DE+K +R KE+I + Q+A GT+TDL CGKC+K+NCTY QVQTRS+DEPMTT
Sbjct: 230 MASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTT 289
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 77/178 (43%), Positives = 101/178 (56%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P +T +P D+VR KCREML ++Q + I +
Sbjct: 97 PRITTFPQVPI--TCDAVRNKCREMLTLALQTDHDHVAVGVSCEHLSSQIEEYILLDLSG 154
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
+ YKNRVRSRI+NLKD KNP L RN + GAI+ ++A MT+E EMA
Sbjct: 155 SQIGYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSE-------------EMA 201
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+DE+K +R KE+I + Q+A GT+TDL C KC+K+NCTY QVQTRS+DEPMTT
Sbjct: 202 SDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTT 259
>WB|WBGene00012000 [details] [associations]
symbol:T24H10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:Z54216 PIR:T25250
RefSeq:NP_495941.1 UniGene:Cel.14290 ProteinModelPortal:P52652
SMR:P52652 STRING:P52652 PaxDb:P52652 EnsemblMetazoa:T24H10.1
GeneID:174450 KEGG:cel:CELE_T24H10.1 UCSC:T24H10.1 CTD:174450
WormBase:T24H10.1 InParanoid:P52652 OMA:KTNIGIK NextBio:884086
Uniprot:P52652
Length = 308
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 70/173 (40%), Positives = 102/173 (58%)
Query: 41 YPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRY 100
+PP+ N D RLK ++L ++++ GD+ G +Y+ ++T+ Y
Sbjct: 138 FPPKHLEN--DETRLKSAQLLLSALRFGDMPQ-GTLDPEELAVQIEEKLYSVHRDTNKSY 194
Query: 101 KNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMK 160
VRSRI NL+D KN L N + G + A K ATMT+E EMA+ E++
Sbjct: 195 SAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATMTSE-------------EMASAEIR 241
Query: 161 TLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+R+KF KE+I + Q++ QGT +D+ KCGKC K+NCTY Q+QTRS+DEPMTT
Sbjct: 242 EMRDKFTKEAILEHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTT 294
>FB|FBgn0030663 [details] [associations]
symbol:CG8117 species:7227 "Drosophila melanogaster"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017890 Pfam:PF01096 Pfam:PF07500 PIRSF:PIRSF006704
PROSITE:PS51133 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0022008 EMBL:AE014298 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003676 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0032784 eggNOG:COG1594 KO:K03145 HSSP:P23193
GeneTree:ENSGT00390000017794 EMBL:BT022128 EMBL:BT023150
RefSeq:NP_573049.2 UniGene:Dm.26636 SMR:Q9VXS6 IntAct:Q9VXS6
MINT:MINT-861025 STRING:Q9VXS6 EnsemblMetazoa:FBtr0074050
GeneID:32499 KEGG:dme:Dmel_CG8117 UCSC:CG8117-RA
FlyBase:FBgn0030663 InParanoid:Q9VXS6 OMA:PEELGSN OrthoDB:EOG4WSTSW
GenomeRNAi:32499 NextBio:778778 Uniprot:Q9VXS6
Length = 162
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 66/161 (40%), Positives = 97/161 (60%)
Query: 53 VRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRSRIANLK 112
+R+KCREML +++ G++ G IY + +YKNR+RSR+ANL+
Sbjct: 5 IRIKCREMLATALKSGNMP-PGCGDPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLANLR 63
Query: 113 DPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESID 172
DPKNP L + ++ G I+ +L+ MT E EMA+D+MK +R K++++SI+
Sbjct: 64 DPKNPELRQKFLLGQITPEELSKMTPE-------------EMASDDMKQMRQKYVQDSIN 110
Query: 173 DAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
AQ+A VQGTKTD KC +C KRNC+ Q+ R DEP+ T
Sbjct: 111 AAQMAKVQGTKTDQFKCERCDKRNCS--QLHIRDGDEPIIT 149
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 71/166 (42%), Positives = 95/166 (57%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P +T +PP D+VR KCREML ++Q + I+ + N
Sbjct: 96 PRITTFPPVPV--TCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN 153
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
TD +YKNRVRSRI+NLKD KNP L RN + GAI+ ++A MT+E EMA
Sbjct: 154 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSE-------------EMA 200
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQ 201
+DE+K +R KE+I + Q+A GT+TDL CGKC+K+NCTY Q
Sbjct: 201 SDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQ 246
>UNIPROTKB|I3L6H4 [details] [associations]
symbol:I3L6H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000029692 Uniprot:I3L6H4
Length = 111
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 63/114 (55%), Positives = 79/114 (69%)
Query: 89 IYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEP 148
IY E K+TD +Y+NRVRSRI+NLKDP+NP L RN + GAISA +A MTAE
Sbjct: 11 IYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE--------- 61
Query: 149 MTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQV 202
EMA+DE++ LRN +E+I + Q+A GT TDL +C KCKK+NCTYNQV
Sbjct: 62 ----EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQV 111
>UNIPROTKB|B7Z4S1 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] InterPro:IPR001222 InterPro:IPR017923 Pfam:PF01096
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003746
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:AC100821 UniGene:Hs.491745
HGNC:HGNC:11612 EMBL:AK297729 IPI:IPI00922871 SMR:B7Z4S1
STRING:B7Z4S1 Ensembl:ENST00000522635 UCSC:uc011ldw.2
Uniprot:B7Z4S1
Length = 117
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 40/61 (65%), Positives = 48/61 (78%)
Query: 153 EMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
EMA+DE+K +R KE+I + Q+A GT+TDL CGKCKK+NCTY QVQTRSADEPMT
Sbjct: 43 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 102
Query: 213 T 213
T
Sbjct: 103 T 103
>POMBASE|SPAC20H4.03c [details] [associations]
symbol:tfs1 "transcription elongation factor TFIIS"
species:4896 "Schizosaccharomyces pombe" [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 PomBase:SPAC20H4.03c
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
GO:GO:0000991 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006379
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EMBL:U20526 PIR:S63845 RefSeq:NP_593623.1 ProteinModelPortal:P49373
SMR:P49373 STRING:P49373 EnsemblFungi:SPAC20H4.03c.1 GeneID:2541941
KEGG:spo:SPAC20H4.03c OrthoDB:EOG4CC79J NextBio:20803025
Uniprot:P49373
Length = 293
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 57/167 (34%), Positives = 85/167 (50%)
Query: 48 NLTDS-VRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRS 106
N+TD +R C ++ N++ + D D + T + Y+NR+RS
Sbjct: 127 NVTDDKIRNNCIGLMYNALVI-DSDESSSLIIAKAKEIDAQVLARAAGKTGSEYRNRMRS 185
Query: 107 RIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKF 166
NLKD NP L + + I+ +L+TMT SA E+A+++ + K
Sbjct: 186 LYMNLKDKNNPKLRASVLRNEITPQRLSTMT------SA-------ELASEDRRKEDAKL 232
Query: 167 IKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
+E++ AQ A Q TDL CGKCK++ +Y Q+QTRSADEPMTT
Sbjct: 233 EQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTT 279
>DICTYBASE|DDB_G0278241 [details] [associations]
symbol:tcea1 "RNA polymerase II elongation factor"
species:44689 "Dictyostelium discoideum" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 dictyBase:DDB_G0278241 GO:GO:0005654
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000023 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 KO:K03145
RefSeq:XP_642233.1 HSSP:P23193 ProteinModelPortal:Q54YG9 SMR:Q54YG9
STRING:Q54YG9 EnsemblProtists:DDB0216299 GeneID:8621441
KEGG:ddi:DDB_G0278241 OMA:LEIWKKV Uniprot:Q54YG9
Length = 319
Score = 181 (68.8 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 45/125 (36%), Positives = 66/125 (52%)
Query: 89 IYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEP 148
+Y+ ++ YK ++RS NLK KN +L + + IS +K +M
Sbjct: 194 MYDIYRGVSKEYKEKLRSFKFNLK--KNDILRLSLLNRQISVAKFCSMDI---------- 241
Query: 149 MTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSAD 208
+ MA+D++K R K K + + + L TD +CGKCK+R CTY Q+QTRSAD
Sbjct: 242 ---YSMASDDLKEERKKLDKFNTEASMLGQNNEATTDQFQCGKCKQRKCTYTQLQTRSAD 298
Query: 209 EPMTT 213
EP TT
Sbjct: 299 EPPTT 303
Score = 49 (22.3 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 55 LKCREMLQNSIQVGDLD 71
+KCRE L+ +I+ G+ D
Sbjct: 5 IKCREQLEKAIKDGEFD 21
>RGD|1584894 [details] [associations]
symbol:Tceanc "transcription elongation factor A (SII)
N-terminal and central domain containing" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 RGD:1584894 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 CTD:170082 OMA:LKKKAKC
OrthoDB:EOG4T1HMR EMBL:CH474014 IPI:IPI00361417
RefSeq:NP_001102485.1 UniGene:Rn.78966 Ensembl:ENSRNOT00000005981
GeneID:367782 KEGG:rno:367782 UCSC:RGD:1584894 NextBio:691604
Uniprot:D4AEK4
Length = 358
Score = 207 (77.9 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 55/161 (34%), Positives = 77/161 (47%)
Query: 43 PQKSHNLTD----SVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDN 98
P KS + D SVR KC E+L ++ D I+ N
Sbjct: 167 PSKSSGVLDNPLVSVRSKCIELLYKALASSCTDHTKVHFWQNLARQIEEHIFTLHSNDIK 226
Query: 99 RYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDE 158
+YKN +RS++ANL +P+N L +N + G ISA + A MT +MAN E
Sbjct: 227 KYKNNIRSKVANLNNPRNSHLQQNLLSGTISAREFAEMTV-------------LDMANQE 273
Query: 159 MKTLRNKFIKESIDDAQLAT-VQGTKTDLLKCGKCKKRNCT 198
+K LR +I+ SI + L V GT T+ +KC +C K NCT
Sbjct: 274 LKQLRASYIESSIQEHHLPQIVDGTHTNKIKCRRCDKYNCT 314
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 205 (77.2 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 57/181 (31%), Positives = 87/181 (48%)
Query: 42 PPQKSHNL--TDSVRLKCREMLQNSI-----QVGDLDMDGXXXXX--XXXXXXXXXIYNE 92
PP+ + L D VR K RE+L ++ + D + + ++ +
Sbjct: 197 PPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNASDPLRVAVSVESLMFEK 256
Query: 93 FKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTF 152
+ K + RS + NL+D NP L R + G IS KL T++AE
Sbjct: 257 LGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAE------------- 303
Query: 153 EMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
+MA+D+ K N+ ++++ D + TD KCG+C +R CTY Q+QTRSADEPMT
Sbjct: 304 DMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADEPMT 363
Query: 213 T 213
T
Sbjct: 364 T 364
>UNIPROTKB|E1BRR3 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
CTD:170082 OMA:LKKKAKC EMBL:AADN02011353 IPI:IPI00596200
RefSeq:XP_416834.1 UniGene:Gga.12219 ProteinModelPortal:E1BRR3
Ensembl:ENSGALT00000026765 GeneID:418636 KEGG:gga:418636
NextBio:20821792 Uniprot:E1BRR3
Length = 359
Score = 192 (72.6 bits), Expect = 9.8e-15, P = 9.8e-15
Identities = 50/168 (29%), Positives = 80/168 (47%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P V + Q+ H ++R KC ++L ++ D + ++
Sbjct: 166 PLVNEAGSQQDH--MRALRCKCTDLLYKALTGSAKDKEETDKWLELSKEIEEHVFALHCK 223
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
D +YKN +RS+I+NLK+PK+ L N G +S A MT EMA
Sbjct: 224 NDKKYKNCIRSKISNLKNPKSCNLKHNLFSGTLSPKAFAEMTV-------------MEMA 270
Query: 156 NDEMKTLRNKFIKESIDDAQLATV-QGTKTDLLKCGKCKKRNCTYNQV 202
+DE+K LR + + SI + QL V GT+T+ +KC +C+K +CT +
Sbjct: 271 SDELKQLRALYTESSIQEHQLPQVINGTQTNKIKCRRCEKSDCTVTMI 318
>CGD|CAL0002729 [details] [associations]
symbol:orf19.4537 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0001139 "core RNA polymerase II
recruiting transcription factor activity" evidence=IEA] [GO:0000993
"RNA polymerase II core binding" evidence=IEA] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 CGD:CAL0002729 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
KO:K03145 TIGRFAMs:TIGR01385 EMBL:AACQ01000143 EMBL:AACQ01000140
RefSeq:XP_712868.1 RefSeq:XP_712962.1 ProteinModelPortal:Q59T94
SMR:Q59T94 STRING:Q59T94 GeneID:3645430 GeneID:3645524
KEGG:cal:CaO19.12012 KEGG:cal:CaO19.4537 Uniprot:Q59T94
Length = 305
Score = 185 (70.2 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 48/126 (38%), Positives = 69/126 (54%)
Query: 89 IY-NEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADE 147
+Y +E+ + Y+NR+RS NL++ KNP L + SK A ++
Sbjct: 179 VYKSEYSKVSDSYRNRLRSFTMNLRNKKNPELRERIL------SKQILPAAFIK------ 226
Query: 148 PMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSA 207
MT EMA + +K K K+++ DAQ AT + TD CGKCK + +Y Q+QTRSA
Sbjct: 227 -MTPNEMAPEALKKEIEKLHKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSA 285
Query: 208 DEPMTT 213
DEP+TT
Sbjct: 286 DEPLTT 291
>UNIPROTKB|F1LV22 [details] [associations]
symbol:F1LV22 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 IPI:IPI00199082
Ensembl:ENSRNOT00000010872 Uniprot:F1LV22
Length = 280
Score = 177 (67.4 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 52/149 (34%), Positives = 72/149 (48%)
Query: 45 KSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRV 104
++ + +DSVRLKCRE L +++ GD + IY E +NTD +YK+
Sbjct: 120 RAPSTSDSVRLKCRETLAAALRTGDDYVAIGADEEELGSQIEEAIYKEIRNTDKKYKSPE 179
Query: 105 RSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRN 164
R+RI+N+KD KNP N + G IS A M AE EMA+DE+K +
Sbjct: 180 RTRISNIKDAKNP---NNVLCGKISPDLFARMRAE-------------EMASDELKKDKE 223
Query: 165 KFIKESIDDAQLATVQGTKTDLL--KCGK 191
K + S GT+TD KC K
Sbjct: 224 KPDQRSHQGVSETKTSGTQTDWFCGKCKK 252
Score = 152 (58.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 35/65 (53%), Positives = 40/65 (61%)
Query: 149 MTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSAD 208
M EMA+DE+K + K + S GT+TD CGKCKK NCTY QVQTRSAD
Sbjct: 208 MRAEEMASDELKKDKEKPDQRSHQGVSETKTSGTQTDWF-CGKCKK-NCTYTQVQTRSAD 265
Query: 209 EPMTT 213
E MTT
Sbjct: 266 EQMTT 270
>UNIPROTKB|H0YF26 [details] [associations]
symbol:TCEANC "Transcription elongation factor A N-terminal
and central domain-containing protein" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR003618
InterPro:IPR016492 Pfam:PF07500 PIRSF:PIRSF006704 PROSITE:PS51321
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0032784 EMBL:AC079383 HGNC:HGNC:28277 Ensembl:ENST00000467590
Uniprot:H0YF26
Length = 272
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 44/149 (29%), Positives = 69/149 (46%)
Query: 50 TDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRSRIA 109
T +R KC E+L ++ D ++ + +YK +RS++A
Sbjct: 92 TTPMRTKCIELLYAALTSSSTDQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKVA 151
Query: 110 NLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKE 169
NLK+P+N L +N + G S + A MT EMAN E+K LR + +
Sbjct: 152 NLKNPRNSHLQQNLLSGTTSPREFAEMTV-------------MEMANKELKQLRASYTES 198
Query: 170 SIDDAQLATV-QGTKTDLLKCGKCKKRNC 197
I + L V GT+T+ +KC +C+K NC
Sbjct: 199 CIQEHYLPQVIDGTQTNKIKCRRCEKYNC 227
>UNIPROTKB|Q8N8B7 [details] [associations]
symbol:TCEANC "Transcription elongation factor A N-terminal
and central domain-containing protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 HSSP:P23193 EMBL:AK097032
EMBL:AK315599 EMBL:DC344354 EMBL:AC079383 EMBL:BC020095
IPI:IPI00856085 IPI:IPI00970906 RefSeq:NP_689847.2
UniGene:Hs.222855 UniGene:Hs.737398 ProteinModelPortal:Q8N8B7
SMR:Q8N8B7 IntAct:Q8N8B7 MINT:MINT-1468129 STRING:Q8N8B7
PhosphoSite:Q8N8B7 DMDM:117949797 PRIDE:Q8N8B7
Ensembl:ENST00000314720 Ensembl:ENST00000380600
Ensembl:ENST00000544987 Ensembl:ENST00000545566 GeneID:170082
KEGG:hsa:170082 UCSC:uc004cvk.2 UCSC:uc010neg.1 CTD:170082
GeneCards:GC0XP013671 HGNC:HGNC:28277 HPA:HPA001013
neXtProt:NX_Q8N8B7 eggNOG:NOG280689 HOGENOM:HOG000234470
InParanoid:Q8N8B7 OMA:LKKKAKC OrthoDB:EOG4T1HMR PhylomeDB:Q8N8B7
GenomeRNAi:170082 NextBio:88870 Bgee:Q8N8B7 Genevestigator:Q8N8B7
GermOnline:ENSG00000176896 Uniprot:Q8N8B7
Length = 351
Score = 176 (67.0 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 44/149 (29%), Positives = 69/149 (46%)
Query: 50 TDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRSRIA 109
T +R KC E+L ++ D ++ + +YK +RS++A
Sbjct: 170 TTPMRTKCIELLYAALTSSSTDQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKVA 229
Query: 110 NLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKE 169
NLK+P+N L +N + G S + A MT EMAN E+K LR + +
Sbjct: 230 NLKNPRNSHLQQNLLSGTTSPREFAEMTV-------------MEMANKELKQLRASYTES 276
Query: 170 SIDDAQLATV-QGTKTDLLKCGKCKKRNC 197
I + L V GT+T+ +KC +C+K NC
Sbjct: 277 CIQEHYLPQVIDGTQTNKIKCRRCEKYNC 305
>MGI|MGI:2685236 [details] [associations]
symbol:Tceanc "transcription elongation factor A (SII)
N-terminal and central domain containing" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51319 PROSITE:PS51321 MGI:MGI:2685236
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
CTD:170082 eggNOG:NOG280689 HOGENOM:HOG000234470 OrthoDB:EOG4T1HMR
EMBL:AK041519 EMBL:AK140929 EMBL:BC067008 IPI:IPI00653939
RefSeq:NP_001007578.2 UniGene:Mm.336318 ProteinModelPortal:Q3US16
SMR:Q3US16 PhosphoSite:Q3US16 PRIDE:Q3US16
Ensembl:ENSMUST00000112188 Ensembl:ENSMUST00000180322 GeneID:245695
KEGG:mmu:245695 InParanoid:Q3US16 NextBio:386930 Bgee:Q3US16
CleanEx:MM_A630018P17RIK Genevestigator:Q3US16 Uniprot:Q3US16
Length = 359
Score = 176 (67.0 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 46/147 (31%), Positives = 72/147 (48%)
Query: 52 SVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRSRIANL 111
SVR KC E+L ++ D I+ N +YK +RS++ANL
Sbjct: 181 SVRSKCVELLYTALASSCTDHTEVHIWQNLAREIEEHIFTLHSNNIKKYKTSIRSKVANL 240
Query: 112 KDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESI 171
K+P+N L +N++ G +SA + A M+ +MA+ E+K LR + + SI
Sbjct: 241 KNPRNFHLQQNFLSGTMSAREFAEMSV-------------LDMASQELKQLRASYTESSI 287
Query: 172 DDAQLA-TVQGTKTDLLKCGKCKKRNC 197
+ L +V GT T+ +KC +C K NC
Sbjct: 288 QEHCLPQSVDGTWTNKIKCRRCDKYNC 314
>ASPGD|ASPL0000075205 [details] [associations]
symbol:AN4861 species:162425 "Emericella nidulans"
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0001139 "core RNA
polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0000993 "RNA polymerase II core binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 EMBL:BN001303 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
HOGENOM:HOG000195015 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EnsemblFungi:CADANIAT00005544 Uniprot:C8V9V9
Length = 304
Score = 171 (65.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 40/117 (34%), Positives = 60/117 (51%)
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
T Y+ ++RS NLK+ NP L + ++ + MT E E+
Sbjct: 187 TKEPYRTKIRSLFQNLKNKSNPTLRVRVLSNEVTPERFVKMTHE-------------ELR 233
Query: 156 NDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
+DE + K KE++D A +A + + + L+CGKC +R TY + QTRSADEPMT
Sbjct: 234 SDEQREKDRKIQKENMDKAMVAQAERSISTSLQCGKCGQRKVTYTEAQTRSADEPMT 290
>UNIPROTKB|E2QWP2 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 OMA:LKKKAKC EMBL:AAEX03026149
Ensembl:ENSCAFT00000018657 Uniprot:E2QWP2
Length = 351
Score = 172 (65.6 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 48/158 (30%), Positives = 72/158 (45%)
Query: 44 QKSHNLTDS---VRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRY 100
Q+S L D VR KC E+L ++ + I+ +Y
Sbjct: 161 QRSSELLDPMVPVRAKCTELLYEALTSPFTEQPKADLWRNFAREIEEHIFTLHSKNLKKY 220
Query: 101 KNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMK 160
K VRS++ANL++PKN L +N + G +S + A MT EMAN E+K
Sbjct: 221 KTCVRSKVANLRNPKNSHLQQNLLSGTMSPREFAKMTV-------------MEMANKELK 267
Query: 161 TLRNKFIKESIDDAQLA-TVQGTKTDLLKCGKCKKRNC 197
LR + + I + L ++GT T +KC +C+K NC
Sbjct: 268 QLRASYTESCIQEHHLPQAIEGTHTRKIKCRRCEKFNC 305
>UNIPROTKB|A0JNK7 [details] [associations]
symbol:LOC504389 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
GeneTree:ENSGT00390000017794 CTD:170082 HOGENOM:HOG000234470
OMA:LKKKAKC OrthoDB:EOG4T1HMR EMBL:DAAA02074911 EMBL:BC126748
IPI:IPI00883437 RefSeq:NP_001019643.2 UniGene:Bt.30852
Ensembl:ENSBTAT00000023859 GeneID:504389 KEGG:bta:504389
HOVERGEN:HBG102368 InParanoid:A0JNK7 NextBio:20866636
Uniprot:A0JNK7
Length = 378
Score = 166 (63.5 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 53 VRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRSRIANLK 112
VR +C E+L ++ ++ +YK +RS++ANLK
Sbjct: 200 VRARCTELLYEALTASSPSQPRAHVWSNLAQEIEAHVFALHPKNLQKYKTCIRSKVANLK 259
Query: 113 DPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESID 172
+P+N L +N + G +S + A MTA EMA+ E+K LR + K ++
Sbjct: 260 NPRNSHLQQNLLSGTMSPREFAKMTA-------------MEMASQELKQLRASYTKSALR 306
Query: 173 DAQLA-TVQGTKTDLLKCGKCKKRNC 197
+ L V+GT T +KC +C+K NC
Sbjct: 307 EHYLPQVVEGTPTRKIKCERCEKFNC 332
>UNIPROTKB|F1SRI2 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
OMA:LKKKAKC EMBL:CU207339 RefSeq:XP_001927499.1
RefSeq:XP_001927509.1 RefSeq:XP_001927522.1 RefSeq:XP_003134980.1
RefSeq:XP_003134981.1 RefSeq:XP_003134982.1 UniGene:Ssc.1528
ProteinModelPortal:F1SRI2 Ensembl:ENSSSCT00000013261
GeneID:100156439 KEGG:ssc:100156439 Uniprot:F1SRI2
Length = 352
Score = 157 (60.3 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 45/163 (27%), Positives = 70/163 (42%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P T + + T VR KC E+L ++ + I+
Sbjct: 157 PKSTDQSSGELRDPTRPVRAKCTELLYEALAAFSTEQPRADLWHRFAQEIEECIFTLHAK 216
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMA 155
+YK +RS+IANLK+P+N L N + G +S A MT +MA
Sbjct: 217 NLKKYKTCIRSKIANLKNPRNSHLRENLLSGIMSPRAFAEMTV-------------MDMA 263
Query: 156 NDEMKTLRNKFIKESIDDAQLAT-VQGTKTDLLKCGKCKKRNC 197
+ E+K LR + + I + L V+GT T ++C +C+K NC
Sbjct: 264 SKELKQLRASYTESCIQEHSLPQGVEGTPTKKVRCRRCEKFNC 306
>SGD|S000003011 [details] [associations]
symbol:DST1 "General transcription elongation factor TFIIS,
enables RNA polymerase" species:4932 "Saccharomyces cerevisiae"
[GO:0000993 "RNA polymerase II core binding" evidence=IPI]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP;IDA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IMP] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IGI;IDA;IMP] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IDA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001193 "maintenance of transcriptional
fidelity during DNA-dependent transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0031440 "regulation
of mRNA 3'-end processing" evidence=IGI;IMP] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 SGD:S000003011 GO:GO:0005634 EMBL:BK006941
GO:GO:0046872 GO:GO:0008270 GO:GO:0001012 GO:GO:0045899
GO:GO:0032968 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006362
GO:GO:0006379 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0031440
GO:GO:0001139 GO:GO:0031564 eggNOG:COG1594 PDB:1PQV PDB:1Y1V
PDB:1Y1Y PDB:3GTM PDB:3PO3 PDBsum:1PQV PDBsum:1Y1V PDBsum:1Y1Y
PDBsum:3GTM PDBsum:3PO3 GO:GO:0042797 GO:GO:0001193
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OrthoDB:EOG4CC79J EMBL:M36724
EMBL:D12478 EMBL:M60770 EMBL:Z72565 EMBL:X00047 PIR:A42921
RefSeq:NP_011472.1 PDB:1ENW PDB:1EO0 PDBsum:1ENW PDBsum:1EO0
ProteinModelPortal:P07273 SMR:P07273 DIP:DIP-2307N IntAct:P07273
MINT:MINT-1167083 STRING:P07273 PaxDb:P07273 PeptideAtlas:P07273
EnsemblFungi:YGL043W GeneID:852839 KEGG:sce:YGL043W CYGD:YGL043w
OMA:ESEHPPQ EvolutionaryTrace:P07273 NextBio:972417
Genevestigator:P07273 GermOnline:YGL043W Uniprot:P07273
Length = 309
Score = 155 (59.6 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 43/126 (34%), Positives = 64/126 (50%)
Query: 91 NEFKNTDNR---YKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADE 147
N+ N D YK R R +N+ NP L G I+ LAT A+
Sbjct: 183 NKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAK-------- 234
Query: 148 PMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSA 207
++A +K + K+++ +AQ AT++ + TD CGKCK++ +Y Q+QTRSA
Sbjct: 235 -----DLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSA 289
Query: 208 DEPMTT 213
DEP+TT
Sbjct: 290 DEPLTT 295
>UNIPROTKB|G3N3C0 [details] [associations]
symbol:G3N3C0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
EMBL:DAAA02075450 Ensembl:ENSBTAT00000044068 OMA:HEDASTS
NextBio:20873392 Uniprot:G3N3C0
Length = 377
Score = 157 (60.3 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 53 VRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNRVRSRIANLK 112
VR +C E+L ++ ++ +YK +RS++ANLK
Sbjct: 199 VRARCTELLYEALTASSPGQPRAHVWPNLAQEIEAHVFALHPKNLQKYKTCIRSKVANLK 258
Query: 113 DPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESID 172
P N L +N + G +S + A MTA EMA+ E+K LR ++K ++
Sbjct: 259 KPHNSHLQQNLLSGTMSPREFAEMTA-------------MEMASQELKQLRASYMKSALR 305
Query: 173 DAQLA-TVQGTKTDLLKCGKCKKRNC 197
L V+GT T +KC +C+K NC
Sbjct: 306 KHYLPQVVEGTPTRKIKCERCEKFNC 331
>GENEDB_PFALCIPARUM|PF07_0057 [details] [associations]
symbol:PF07_0057 "transcription elongation
factor s-ii, putative" species:5833 "Plasmodium falciparum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008023 "transcription elongation
factor complex" evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 153 (58.9 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 43/131 (32%), Positives = 69/131 (52%)
Query: 89 IYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEP 148
+Y E +++ Y +++S NL D KNP + IS+ LATM ++
Sbjct: 273 VYMEKRSSQKEYNMQLKSIKFNLSDKKNPNFNEKVYSEFISSKALATMNSQ--------- 323
Query: 149 MTTFEMANDEMKTLRNKFIKESI-----D-DAQLATVQGTKTDLLKCGKCKKRNCTYNQV 202
+MA+DE K R K ++ES+ D D + ++ ++ +C KCK + Y+Q+
Sbjct: 324 ----DMASDEKKNERKKCLQESLLACQSDWDVKNILLKKSRKGEFQCFKCKGYDTIYHQL 379
Query: 203 QTRSADEPMTT 213
QTRS+DEPMTT
Sbjct: 380 QTRSSDEPMTT 390
>UNIPROTKB|Q8IBV2 [details] [associations]
symbol:PF07_0057 "Transcription elongation factor s-II,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0008023 "transcription elongation factor complex"
evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 153 (58.9 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 43/131 (32%), Positives = 69/131 (52%)
Query: 89 IYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEP 148
+Y E +++ Y +++S NL D KNP + IS+ LATM ++
Sbjct: 273 VYMEKRSSQKEYNMQLKSIKFNLSDKKNPNFNEKVYSEFISSKALATMNSQ--------- 323
Query: 149 MTTFEMANDEMKTLRNKFIKESI-----D-DAQLATVQGTKTDLLKCGKCKKRNCTYNQV 202
+MA+DE K R K ++ES+ D D + ++ ++ +C KCK + Y+Q+
Sbjct: 324 ----DMASDEKKNERKKCLQESLLACQSDWDVKNILLKKSRKGEFQCFKCKGYDTIYHQL 379
Query: 203 QTRSADEPMTT 213
QTRS+DEPMTT
Sbjct: 380 QTRSSDEPMTT 390
>MGI|MGI:1344352 [details] [associations]
symbol:Dido1 "death inducer-obliterator 1" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 MGI:MGI:1344352 GO:GO:0005737
GO:GO:0006915 GO:GO:0005654 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 eggNOG:NOG255142 HOVERGEN:HBG060199
OMA:PNRMCAD EMBL:AJ238332 EMBL:AY425951 EMBL:AY425952 EMBL:AK129117
EMBL:AK032843 EMBL:AK042474 EMBL:AK044919 EMBL:AL732560
EMBL:BC029110 EMBL:BC044755 EMBL:BC096662 EMBL:BC138712
EMBL:BC138713 IPI:IPI00227469 IPI:IPI00453851 IPI:IPI00828403
RefSeq:NP_035935.2 RefSeq:NP_780760.2 RefSeq:NP_808520.2
UniGene:Mm.253836 UniGene:Mm.490825 PDB:1WEM PDBsum:1WEM
ProteinModelPortal:Q8C9B9 SMR:Q8C9B9 STRING:Q8C9B9
PhosphoSite:Q8C9B9 PaxDb:Q8C9B9 PRIDE:Q8C9B9
Ensembl:ENSMUST00000037764 Ensembl:ENSMUST00000087517
Ensembl:ENSMUST00000103055 Ensembl:ENSMUST00000103056
Ensembl:ENSMUST00000103057 Ensembl:ENSMUST00000130986 GeneID:23856
KEGG:mmu:23856 UCSC:uc008ojq.1 UCSC:uc008ojr.1 UCSC:uc008oju.1
GeneTree:ENSGT00530000063844 InParanoid:Q8C9B9
EvolutionaryTrace:Q8C9B9 NextBio:303557 Bgee:Q8C9B9
CleanEx:MM_DIDO1 CleanEx:MM_DIO1 Genevestigator:Q8C9B9
Uniprot:Q8C9B9
Length = 2256
Score = 124 (48.7 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 38/133 (28%), Positives = 62/133 (46%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTD 97
V+ P Q + + ++R +E+L + D + ++N F+ TD
Sbjct: 656 VSPAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVTD 715
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMAND 157
NRYK++ RS + NLKDPKN L + IS +KL M E + S + M T +
Sbjct: 716 NRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPE-ELVSKELSMWTEKPTKS 774
Query: 158 EMKTLRNKFIKES 170
+++ R K + ES
Sbjct: 775 VIES-RTKLLNES 786
>UNIPROTKB|F1NFF0 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:AADN02019222 EMBL:AADN02019223
IPI:IPI00821338 Ensembl:ENSGALT00000039659 ArrayExpress:F1NFF0
Uniprot:F1NFF0
Length = 2253
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 34/104 (32%), Positives = 48/104 (46%)
Query: 38 VTQYPPQKSHN--LTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
V+ P Q N + ++R +E+L + D + ++N F
Sbjct: 678 VSAIPIQSQPNSQIRQNIRRSLKEILWKRVNDSDDLVMTESEVGKVALNIEKEMFNLFHV 737
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAE 139
TDNRYK++ RS + NLKDPKN L + G IS SKL M E
Sbjct: 738 TDNRYKSKYRSIMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPE 781
>UNIPROTKB|F1NGH5 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AADN02019222 EMBL:AADN02019223 IPI:IPI00577866
Ensembl:ENSGALT00000009066 ArrayExpress:F1NGH5 Uniprot:F1NGH5
Length = 2287
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 34/104 (32%), Positives = 48/104 (46%)
Query: 38 VTQYPPQKSHN--LTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
V+ P Q N + ++R +E+L + D + ++N F
Sbjct: 678 VSAIPIQSQPNSQIRQNIRRSLKEILWKRVNDSDDLVMTESEVGKVALNIEKEMFNLFHV 737
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAE 139
TDNRYK++ RS + NLKDPKN L + G IS SKL M E
Sbjct: 738 TDNRYKSKYRSIMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPE 781
>UNIPROTKB|E2QZU0 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761
PROSITE:PS01030 CTD:51728 KO:K03019 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:AAEX03004698 RefSeq:XP_854405.2
Ensembl:ENSCAFT00000031350 GeneID:611625 KEGG:cfa:611625
Uniprot:E2QZU0
Length = 108
Score = 88 (36.0 bits), Expect = 0.00068, P = 0.00068
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 156 NDEMKTLRNKFIK-ESIDDAQ--LATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
N K K+ K + +DD A + + C KC+ + Q+QTRSADEPMT
Sbjct: 33 NITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMT 92
Query: 213 TLH 215
T +
Sbjct: 93 TFY 95
>UNIPROTKB|Q9Y2Y1 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase III subunit
RPC10" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 GO:GO:0046872
GO:GO:0003677 EMBL:AE006462 GO:GO:0008270 GO:GO:0045087
GO:GO:0051607 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
EMBL:DQ431198 GO:GO:0006386 GO:GO:0006385 EMBL:Z69719
eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030 CTD:51728
HOGENOM:HOG000228131 HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P
EMBL:AF126531 EMBL:AF051316 EMBL:AF060223 EMBL:BC011932
IPI:IPI00008461 RefSeq:NP_057394.2 UniGene:Hs.632223
ProteinModelPortal:Q9Y2Y1 SMR:Q9Y2Y1 STRING:Q9Y2Y1
PhosphoSite:Q9Y2Y1 DMDM:116242768 PRIDE:Q9Y2Y1 DNASU:51728
Ensembl:ENST00000293860 GeneID:51728 KEGG:hsa:51728 UCSC:uc002cfi.2
GeneCards:GC16M000096 H-InvDB:HIX0012635 HGNC:HGNC:14121
HPA:HPA005891 MIM:606007 neXtProt:NX_Q9Y2Y1 PharmGKB:PA33521
InParanoid:Q9Y2Y1 OMA:ITRKVNN PhylomeDB:Q9Y2Y1 BindingDB:Q9Y2Y1
ChEMBL:CHEMBL2144 ChiTaRS:POLR3K GenomeRNAi:51728 NextBio:55788
Bgee:Q9Y2Y1 CleanEx:HS_POLR3K Genevestigator:Q9Y2Y1
GermOnline:ENSG00000161980 Uniprot:Q9Y2Y1
Length = 108
Score = 88 (36.0 bits), Expect = 0.00068, P = 0.00068
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 156 NDEMKTLRNKFIK-ESIDDAQ--LATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
N K K+ K + +DD A + + C KC+ + Q+QTRSADEPMT
Sbjct: 33 NITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMT 92
Query: 213 TLH 215
T +
Sbjct: 93 TFY 95
>UNIPROTKB|E1BVY1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:AADN02002654
EMBL:AADN02002655 IPI:IPI00602717 Ensembl:ENSGALT00000026230
Uniprot:E1BVY1
Length = 2050
Score = 115 (45.5 bits), Expect = 0.00079, P = 0.00079
Identities = 28/104 (26%), Positives = 51/104 (49%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P+V P + + SV+ +E+L + L + +++ F++
Sbjct: 908 PNVPASKPS-ADQIRHSVKQSLKEILMKRLTDSSLKIP-EERAAKVATRIERELFSFFRD 965
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAE 139
TD++YKN+ RS + NLKDPKN +L + + G ++ L M+ E
Sbjct: 966 TDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIKMSPE 1009
>UNIPROTKB|F1N3E8 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761 PROSITE:PS01030
IPI:IPI00686254 UniGene:Bt.6024 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:DAAA02057271
Ensembl:ENSBTAT00000026386 Uniprot:F1N3E8
Length = 108
Score = 87 (35.7 bits), Expect = 0.00089, P = 0.00089
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 156 NDEMKTLRNKFIK-ESIDDAQ--LATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
N K K+ K + +DD A + + C KC+ + Q+QTRSADEPMT
Sbjct: 33 NVTRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMT 92
Query: 213 TLH 215
T +
Sbjct: 93 TFY 95
>UNIPROTKB|F2Z4X7 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761 PROSITE:PS01030
KO:K03019 OMA:ITRKVNN GeneTree:ENSGT00550000075071 EMBL:FP103025
RefSeq:XP_003124725.1 ProteinModelPortal:F2Z4X7 SMR:F2Z4X7
Ensembl:ENSSSCT00000008733 GeneID:100521261 KEGG:ssc:100521261
Uniprot:F2Z4X7
Length = 108
Score = 87 (35.7 bits), Expect = 0.00089, P = 0.00089
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 156 NDEMKTLRNKFIK-ESIDDAQ--LATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
N K K+ K + +DD A + + C KC+ + Q+QTRSADEPMT
Sbjct: 33 NITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMT 92
Query: 213 TLH 215
T +
Sbjct: 93 TFY 95
>MGI|MGI:1914255 [details] [associations]
symbol:Polr3k "polymerase (RNA) III (DNA directed)
polypeptide K" species:10090 "Mus musculus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 MGI:MGI:1914255 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0003899 UniGene:Mm.271986 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
ChiTaRS:POLR3K EMBL:AK005152 EMBL:AK010875 EMBL:AK021353
EMBL:AK031110 IPI:IPI00133407 RefSeq:NP_080177.1
ProteinModelPortal:Q9CQZ7 SMR:Q9CQZ7 STRING:Q9CQZ7
PhosphoSite:Q9CQZ7 Ensembl:ENSMUST00000039551 GeneID:67005
KEGG:mmu:67005 GeneTree:ENSGT00550000075071 InParanoid:Q9CQZ7
NextBio:323282 Bgee:Q9CQZ7 CleanEx:MM_POLR3K Genevestigator:Q9CQZ7
GermOnline:ENSMUSG00000038628 Uniprot:Q9CQZ7
Length = 108
Score = 87 (35.7 bits), Expect = 0.00089, P = 0.00089
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 156 NDEMKTLRNKFIK-ESIDDAQ--LATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
N K K+ K + +DD A + + C KC+ + Q+QTRSADEPMT
Sbjct: 33 NITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMT 92
Query: 213 TLH 215
T +
Sbjct: 93 TFY 95
>UNIPROTKB|Q5FVH1 [details] [associations]
symbol:Polr3k "DNA-directed RNA polymerase subunit"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 EMBL:CH474066 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:BC089990 IPI:IPI00368843
RefSeq:NP_001014281.1 UniGene:Rn.92563 SMR:Q5FVH1 STRING:Q5FVH1
Ensembl:ENSRNOT00000024096 GeneID:366277 KEGG:rno:366277
RGD:1587294 InParanoid:Q5FVH1 NextBio:689123 Genevestigator:Q5FVH1
Uniprot:Q5FVH1
Length = 108
Score = 87 (35.7 bits), Expect = 0.00089, P = 0.00089
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 156 NDEMKTLRNKFIK-ESIDDAQ--LATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
N K K+ K + +DD A + + C KC+ + Q+QTRSADEPMT
Sbjct: 33 NITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMT 92
Query: 213 TLH 215
T +
Sbjct: 93 TFY 95
>UNIPROTKB|E7ER40 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00966918
ProteinModelPortal:E7ER40 SMR:E7ER40 Ensembl:ENST00000515594
ArrayExpress:E7ER40 Bgee:E7ER40 Uniprot:E7ER40
Length = 861
Score = 111 (44.1 bits), Expect = 0.00092, P = 0.00092
Identities = 27/104 (25%), Positives = 51/104 (49%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKN 95
P+ + P + + SVR +++L + +L + +++ F++
Sbjct: 184 PAASASKPS-ADQIRQSVRHSLKDILMKRLTDSNLKVP-EEKAAKVATKIEKELFSFFRD 241
Query: 96 TDNRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAE 139
TD +YKN+ RS + NLKDPKN +L + + G ++ L M+ E
Sbjct: 242 TDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPE 285
>UNIPROTKB|F1PLS2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AAEX03014133 Ensembl:ENSCAFT00000020204 Uniprot:F1PLS2
Length = 1518
Score = 113 (44.8 bits), Expect = 0.00099, P = 0.00099
Identities = 36/127 (28%), Positives = 55/127 (43%)
Query: 44 QKSHNLTDSVRLKCREMLQNSIQVGDLDMDGXXXXXXXXXXXXXXIYNEFKNTDNRYKNR 103
Q + + ++R +E+L + D + ++N F+ TDNRYK++
Sbjct: 674 QPNSQIRQNIRRSLKEILWKRVNDSDDLIMTESEVGKIALHIEKEMFNLFQVTDNRYKSK 733
Query: 104 VRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLR 163
RS + NLKDPKN L + IS +KL M E + E T E + R
Sbjct: 734 YRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELV--SKELSTWRERPTKPVMESR 791
Query: 164 NKFIKES 170
NK E+
Sbjct: 792 NKLHSEN 798
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.131 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 221 185 0.00080 110 3 11 22 0.43 32
31 0.41 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 63
No. of states in DFA: 556 (59 KB)
Total size of DFA: 143 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.51u 0.20s 17.71t Elapsed: 00:00:00
Total cpu time: 17.52u 0.20s 17.72t Elapsed: 00:00:00
Start: Thu Aug 15 14:31:33 2013 End: Thu Aug 15 14:31:33 2013