RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy996
(221 letters)
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA,
transcription, arrest, BACKTRACKING cleavage,
transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A
{Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S*
1enw_A
Length = 178
Score = 122 bits (306), Expect = 3e-35
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 13/164 (7%)
Query: 50 TDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIA 109
+R + + L + + A E E N + YK R R +
Sbjct: 14 HHKLRDQVLKALYDVLAKESEHPPQSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYS 73
Query: 110 NLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKE 169
N+ NP L G I+ LAT A ++A +K + K+
Sbjct: 74 NVISKNNPDLKHKIANGDITPEFLATCDA-------------KDLAPAPLKQKIEEIAKQ 120
Query: 170 SIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
++ +AQ AT++ + TD CGKCK++ +Y Q+QTRSA P+TT
Sbjct: 121 NLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSAAAPLTT 164
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA
cleavage, proofreading, BACKTRACKING, gene expression,
multiprotein complex; 3.80A {Saccharomyces cerevisiae}
SCOP: i.8.1.1 PDB: 1eo0_A
Length = 309
Score = 109 bits (272), Expect = 5e-29
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 13/206 (6%)
Query: 8 PAPPGISNNKDSSSKKKEAKEEKKEDKKPSVTQYPPQKSHNLTDSVRLKCREMLQNSIQV 67
+ +SS+ K++K KP ++ + +R + + L + +
Sbjct: 103 VGESVNGVQQPASSQSDAMKQDKYVSTKPRNSKNDGVDTAIYHHKLRDQVLKALYDVLAK 162
Query: 68 GDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGA 127
A E E N + YK R R +N+ NP L G
Sbjct: 163 ESEHPPQSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGD 222
Query: 128 ISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLL 187
I+ LAT A ++A +K + K+++ +AQ AT++ + TD
Sbjct: 223 ITPEFLATCDA-------------KDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRF 269
Query: 188 KCGKCKKRNCTYNQVQTRSADEPMTT 213
CGKCK++ +Y Q+QTRSADEP+TT
Sbjct: 270 TCGKCKEKKVSYYQLQTRSADEPLTT 295
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain
tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 98.1 bits (244), Expect = 1e-26
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 45 KSHNLTDSVRLKCREMLQNSIQVGDLDMDGL---ASLEELATELEEAIYNEFKNTDNRYK 101
S D +R R L++ + D + ++AT++E+ +++ F++TD +YK
Sbjct: 4 GSSGSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYK 63
Query: 102 NRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKT 161
N+ RS + NLKDPKN +L + + G ++ L M+ E E+A+ E+
Sbjct: 64 NKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPE-------------ELASKELAA 110
Query: 162 LRNKFIKES 170
R + S
Sbjct: 111 WRRRSGPSS 119
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A
{Homo sapiens}
Length = 108
Score = 94.7 bits (235), Expect = 2e-25
Identities = 56/117 (47%), Positives = 73/117 (62%), Gaps = 13/117 (11%)
Query: 42 PPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYK 101
++ + +DSVRLKCREML +++ GD + A EEL +++EEAIY E +NTD +YK
Sbjct: 5 FTPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYK 64
Query: 102 NRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDE 158
NRVRSRI+NLKD KNP L +N + G I A MTAE EMA+DE
Sbjct: 65 NRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE-------------EMASDE 108
>1tfi_A Transcriptional elongation factor SII; transcription regulation;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 50
Score = 68.2 bits (167), Expect = 6e-16
Identities = 28/35 (80%), Positives = 30/35 (85%)
Query: 179 VQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTT 213
GT+TDL CGKCKK+NCTY QVQTRSADEPMTT
Sbjct: 2 TGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT 36
Score = 36.3 bits (84), Expect = 3e-04
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 139 EVQTRSADEPMTTF 152
+VQTRSADEPMTTF
Sbjct: 24 QVQTRSADEPMTTF 37
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon,
hyperthermophilic, extremophIle; NMR {Thermococcus
celer} SCOP: g.41.3.1
Length = 57
Score = 55.2 bits (133), Expect = 7e-11
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 184 TDLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFY 218
T + C KC + ++QTR+ DEP T FY
Sbjct: 13 TTKITCPKCGNDTAYWWEMQTRAGDEPSTI---FY 44
Score = 33.6 bits (77), Expect = 0.004
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 139 EVQTRSADEPMTTF 152
E+QTR+ DEP T F
Sbjct: 30 EMQTRAGDEPSTIF 43
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 113
Score = 52.1 bits (124), Expect = 4e-09
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 152 FEMANDEMKTLRNKFIKESIDDAQL----ATVQGTKTDLLKCGKCKKRNCTYNQVQTRSA 207
+ K R++ ++++ + +T +C +C + + Q +R
Sbjct: 34 YSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTHSRRG 93
Query: 208 DEPMTTLHHFYI 219
D MT Y+
Sbjct: 94 DTMMTL---IYV 102
Score = 31.3 bits (70), Expect = 0.075
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 139 EVQTRSADEPMTTF 152
+ +R D MT
Sbjct: 87 QTHSRRGDTMMTLI 100
>3qt1_I DNA-directed RNA polymerases I, II, and III subun;
transferase-transcription complex, RNA polymerase II,
transc elongation; 4.30A {Saccharomyces cerevisiae}
Length = 133
Score = 48.3 bits (114), Expect = 1e-07
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 158 EMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHF 217
L + + + + +C KC R + Q+Q RSADEPMTT F
Sbjct: 64 YRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQLQIRSADEPMTT---F 120
Query: 218 YI 219
Y
Sbjct: 121 YK 122
Score = 29.0 bits (64), Expect = 0.70
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 139 EVQTRSADEPMTTF 152
++Q RSADEPMTTF
Sbjct: 107 QLQIRSADEPMTTF 120
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1
PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I
1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I*
1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Length = 122
Score = 40.2 bits (93), Expect = 7e-05
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 153 EMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMT 212
L + + + + +C KC R + Q Q R D M
Sbjct: 39 GSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMV 98
Query: 213 TLHHFYI 219
F++
Sbjct: 99 L---FFV 102
Score = 26.4 bits (57), Expect = 5.2
Identities = 6/55 (10%), Positives = 13/55 (23%)
Query: 98 NRYKNRVRSRIANLKDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTF 152
+ + ++D + + + Q R D M F
Sbjct: 46 HELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLF 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 2e-04
Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 38/146 (26%)
Query: 9 APPGISNNKDSSSKKKEAKEEKKEDKKPSV-TQY-P---PQKSHNLTDSVRLKCREMLQN 63
AP G+ ++ S+ +K ++ P P SH L + +++
Sbjct: 398 APSGLDQSRIPFSE-----------RKLKFSNRFLPVASPFHSHLLVPAS-----DLINK 441
Query: 64 SIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNR-YKNRVRSRIAN--LKDP----KN 116
DL + ++ A +++ +Y+ F +D R + RI + ++ P
Sbjct: 442 -----DLVKNNVSF---NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 117 PMLSRNYI--FGAISASKLATMTAEV 140
+I FG AS L +T
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRN 519
Score = 34.6 bits (79), Expect = 0.025
Identities = 28/152 (18%), Positives = 44/152 (28%), Gaps = 62/152 (40%)
Query: 73 DGLASLEELATELE-------------------------EAIYNEFKNTDNRY--KNRVR 105
+G A+ +E T E EF +N Y N +
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF---ENCYLEGNDIH 102
Query: 106 SRIANL------KDPKNPMLSRNYIFGAISASKLATMTAEVQTRSADEPMTTFEMANDEM 159
+ A L K L +NY I+A +A + ++ SA F +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNY----ITARIMAKRPFDKKSNSA-----LFRAVGEG- 152
Query: 160 KTLRNKFIKESIDDAQLATV---QGTKTDLLK 188
+AQL + QG D +
Sbjct: 153 -------------NAQLVAIFGGQGNTDDYFE 171
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 30/175 (17%)
Query: 57 CREMLQNSIQVGDLDMDGLASLEELATELEEAIYNE-FKNT----DNRYKNRVRS-RIAN 110
++ N D + + + EL + ++ ++N N V++ + N
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-----VQNAKAWN 260
Query: 111 LKDPKNPML--SRNY-IFGAISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFI 167
+ +L +R + +SA+ T + S D T DE+K+L K++
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAAT----TTHI---SLDHHSMTLT--PDEVKSLLLKYL 311
Query: 168 KESIDDAQLATVQGTKTDLLKCG----KCKKRNCTYNQVQTRSADEPMTTLHHFY 218
D L + T+ + + T++ + + D+ T +
Sbjct: 312 DCRPQD--LP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 33.5 bits (76), Expect = 0.045
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 65 IQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYI 124
I +G+ L+ L++ + ++ ++ D Y +RVR A+ N R +
Sbjct: 193 IDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARYNADPDR--L 250
Query: 125 FGAI-SASKLATMTAEVQTRSADEPMTTFEMANDEMKTL 162
F + A KLA + T A++ F + ++ + L
Sbjct: 251 FESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVL 289
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.96
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 9/26 (34%)
Query: 29 EKKEDKK--PSVTQYPPQKSHNLTDS 52
EK+ KK S+ Y DS
Sbjct: 18 EKQALKKLQASLKLYAD-------DS 36
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase,
phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Length = 1354
Score = 29.4 bits (65), Expect = 1.0
Identities = 26/178 (14%), Positives = 58/178 (32%), Gaps = 17/178 (9%)
Query: 8 PAPPGISNNKDSSSKKKEAKEEKKEDKKPSVTQYPPQKSHNLTDSVRLKCREMLQNSIQV 67
PA P + + + + + S + P+K D R+
Sbjct: 1061 PATPQAATSVTNPAAGDGISVQNDPPVDSSGSPASPKKGKANADDYAESFRDFQ------ 1114
Query: 68 GDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSRNYIFGA 127
+ + + E+ E IYN+ + +++ + +++ ++ L
Sbjct: 1115 -------CSQIVKCELEMAEKIYNDVVAA---HPKHLQANLLLIQNIESNQLKSQLPLTF 1164
Query: 128 ISASKLATMTAEVQTRSADEPMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTD 185
++A K + A E A + + L +K + + D L + G K D
Sbjct: 1165 VNAQKTSPPEAGESADKQKEDQKKVRSALERIVKLADK-VIQETDSEALLSYYGLKND 1221
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 1.7
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 17 KDSSSKKKEA--KEEKKEDKKPSVTQYPPQKSHNLTDSVRLKCREMLQN 63
D++SK E +E+ K+D + + Q N + R+ + Q
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN-KINNRIADKAFYQQ 148
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 27.9 bits (62), Expect = 2.9
Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 29/182 (15%)
Query: 17 KDSSSKKKEAKEEKKEDKKPSVTQYPPQKSHNLTDSVRLKCREMLQ-------------- 62
KD+ K+ ++K E KK T+ S +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTR 687
Query: 63 -NSIQVGDLDMDGLASLEELATELEEA-IYNEFKNTDNRYKNRVRSRIANLKDPKNPMLS 120
+ + D +A L + A + F + N + +A L+ +
Sbjct: 688 LLGLGASEGDARTIARDPALLAFVGGAAPGDTFAQVASWTVNEL---VAGLRAGEVK--- 741
Query: 121 RNYIFGAISASKLATMTAE--VQTRSADEPMTTF-EMANDEMKTLRNKFIKESIDDAQLA 177
A + LA A + R A E + + + + + + + L
Sbjct: 742 ----VRAADLAPLAEGVASGQLSARIAREALARAAASGDAPLTIIEREGLNAGLSAEALQ 797
Query: 178 TV 179
V
Sbjct: 798 QV 799
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate,
antisigma factor antagonist, ensemble structures,
transport protein; NMR {Mycobacterium bovis}
Length = 130
Score = 26.5 bits (59), Expect = 4.7
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 14/55 (25%)
Query: 67 VGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRVRSRIANLKDPKNPMLSR 121
++D+ L +L++L TEL + +A +K L
Sbjct: 58 NVEVDLTALDALDQLRTELLRR--------------GIVFAMARVKQDLRESLRA 98
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 26.8 bits (59), Expect = 5.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 34 KKPSVTQYPPQKSHNLTDSVRLKCR 58
+KP V+ PP ++V L C
Sbjct: 3 QKPKVSLNPPWNRIFKGENVTLTCN 27
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein,
Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA
demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo
sapiens}
Length = 495
Score = 27.1 bits (59), Expect = 5.3
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNE 92
S T + S D + +C+ LQN D D L S E + E I+NE
Sbjct: 308 SSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNE 363
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 26.7 bits (59), Expect = 6.4
Identities = 9/62 (14%), Positives = 22/62 (35%)
Query: 41 YPPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRY 100
P ++ D R +M++ V + A + + L E I + ++
Sbjct: 140 LGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQ 199
Query: 101 KN 102
++
Sbjct: 200 RH 201
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 26.5 bits (58), Expect = 6.5
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
+VTQ P K V L C+
Sbjct: 1 AVTQSPRNKVAVTGGKVTLSCQ 22
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 26.4 bits (58), Expect = 6.6
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
++ Q+P + + L+C
Sbjct: 3 TIHQWPATLVQPVGSPLSLECT 24
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 25.6 bits (56), Expect = 9.8
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 35 KPSVTQYPPQKSHNLTDSVRLKCR 58
K V P S DSV LKC+
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQ 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.127 0.351
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,070,071
Number of extensions: 164045
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 44
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.5 bits)