RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy996
(221 letters)
>d1enwa_ a.5.4.1 (A:) Elongation factor TFIIS domain 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 114
Score = 79.1 bits (195), Expect = 9e-20
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 50 TDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEF--KNTDNRYKNRVRSR 107
+R + + L + + S+ A +E + + YK R R
Sbjct: 19 HHKLRDQVLKALYDVLAKE--SEHPPQSILHTAKAIESEMNKVNNCDTNEAAYKARYRII 76
Query: 108 IANLKDPKNPMLSRNYIFGAISASKLATMTAE 139
+N+ NP L G I+ LAT A+
Sbjct: 77 YSNVISKNNPDLKHKIANGDITPEFLATCDAK 108
>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 68.6 bits (168), Expect = 1e-16
Identities = 29/41 (70%), Positives = 32/41 (78%), Gaps = 3/41 (7%)
Query: 179 VQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFYI 219
GT+TDL CGKCKK+NCTY QVQTRSADEPMTT F +
Sbjct: 2 TGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTT---FVV 39
Score = 35.1 bits (81), Expect = 4e-04
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 139 EVQTRSADEPMTTF 152
+VQTRSADEPMTTF
Sbjct: 24 QVQTRSADEPMTTF 37
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon
Thermococcus celer [TaxId: 2264]}
Length = 57
Score = 51.7 bits (124), Expect = 4e-10
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 184 TDLLKCGKCKKRNCTYNQVQTRSADEPMTTLHHFY 218
T + C KC + ++QTR+ DEP T FY
Sbjct: 13 TTKITCPKCGNDTAYWWEMQTRAGDEPSTI---FY 44
Score = 32.4 bits (74), Expect = 0.003
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 139 EVQTRSADEPMTTF 152
E+QTR+ DEP T F
Sbjct: 30 EMQTRAGDEPSTIF 43
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 43.3 bits (102), Expect = 7e-07
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 188 KCGKCKKRNCTYNQVQTRSADEPMTTLHHFYI 219
+C KC R + Q Q R D M F++
Sbjct: 25 ECPKCHSRENVFFQSQQRRKDTSMVL---FFV 53
Score = 26.8 bits (59), Expect = 0.62
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 135 TMTAEVQTRSADEPMTTF 152
+ + Q R D M F
Sbjct: 34 NVFFQSQQRRKDTSMVLF 51
>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 110
Score = 30.9 bits (69), Expect = 0.035
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
SVTQ Q + + D + + C
Sbjct: 2 SVTQTEGQVALSEEDFLTIHCN 23
>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 29.6 bits (66), Expect = 0.14
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 36 PSVTQYPPQKSHNLTDSVRLKCR 58
P + +P + L V L C
Sbjct: 2 PELRIFPKKMDAELGQKVDLVCE 24
>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 115
Score = 29.0 bits (64), Expect = 0.20
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
SVTQ S + V L+C
Sbjct: 2 SVTQLGSHVSVSEGALVLLRCN 23
>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 115
Score = 28.7 bits (63), Expect = 0.21
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
SVTQ + V L C
Sbjct: 3 SVTQTEGLVTLTEGLPVMLNCT 24
>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 113
Score = 28.4 bits (62), Expect = 0.32
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
VTQ P S +++ L C
Sbjct: 2 EVTQIPAALSVPEGENLVLNCS 23
>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1,
extracellular domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 114
Score = 28.2 bits (62), Expect = 0.40
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
S+T YP + + + C
Sbjct: 1 SLTFYPAWLTVSEGANATFTCS 22
>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 118
Score = 27.6 bits (60), Expect = 0.63
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
V+Q+P SV+++CR
Sbjct: 4 VSQHPSMVIVKSGTSVKIECR 24
>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 115
Score = 27.4 bits (60), Expect = 0.68
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
SVTQ + + + S++L+C+
Sbjct: 2 SVTQPDARVTVSEGASLQLRCK 23
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 265
Score = 28.2 bits (62), Expect = 0.69
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 43 PQKSHNLTDSVRLKCREML---QNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNR 99
P + + + ++ I +G+ L+ L++ + ++ ++ D
Sbjct: 160 PAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYD 219
Query: 100 YKNRVRSRIANLKDPKNPMLSRNYIFGAI-SASKLATMTAEVQT 142
Y +RVR A+ P + +F + A KLA + T
Sbjct: 220 YVHRVRDIEAD--TPARYNADPDRLFESSGCAGKLAVFAVRLDT 261
>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo
sapiens), delta-chain [TaxId: 9606]}
Length = 116
Score = 27.2 bits (59), Expect = 0.76
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
VTQ P ++ V L C
Sbjct: 2 KVTQSSPDQTVASGSEVVLLCT 23
>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 2 [TaxId: 10090]}
Length = 111
Score = 27.0 bits (59), Expect = 0.81
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P + +L + C
Sbjct: 4 LTQSPASLAVSLGQPATISCG 24
>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 113
Score = 27.1 bits (59), Expect = 0.82
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
V Q P S + L+C
Sbjct: 3 QVEQSPSALSLHEGTDSALRCN 24
>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 113
Score = 27.1 bits (59), Expect = 0.84
Identities = 7/21 (33%), Positives = 7/21 (33%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
VTQ P V L C
Sbjct: 2 VTQTPRYLIKTRGQQVTLSCS 22
>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 111
Score = 26.7 bits (58), Expect = 1.1
Identities = 6/22 (27%), Positives = 6/22 (27%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
V Q P S L C
Sbjct: 2 QVKQNSPSLSVQEGRISILNCD 23
>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 114
Score = 26.7 bits (58), Expect = 1.1
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
VTQ + S + V L C
Sbjct: 2 KVTQAQTEISVVEKEDVTLDCV 23
>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 1.1 [TaxId: 10090]}
Length = 112
Score = 26.6 bits (58), Expect = 1.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P +SV + CR
Sbjct: 4 MTQAAPSVPVTPGESVSISCR 24
>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 26.6 bits (58), Expect = 1.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ S +L + V + C+
Sbjct: 4 MTQSQKFMSTSLGNRVSVTCK 24
>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Engineered (including hybrid
species)}
Length = 107
Score = 26.6 bits (58), Expect = 1.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P S ++ D + + CR
Sbjct: 4 LTQSPSSLSASVGDRITITCR 24
>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 106
Score = 26.6 bits (58), Expect = 1.3
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P S +L V + C+
Sbjct: 3 LTQSPSSLSASLGGKVTITCK 23
>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 114
Score = 26.6 bits (58), Expect = 1.4
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P +V L C
Sbjct: 2 ITQSPKYLFRKEGQNVTLSCE 22
>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted
wobbegong (Orectolobus maculatus) [TaxId: 168098]}
Length = 113
Score = 26.4 bits (57), Expect = 1.4
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
V Q P + +S+ + C
Sbjct: 3 VDQTPRTATKETGESLTINCV 23
>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 4
[TaxId: 10090]}
Length = 106
Score = 26.2 bits (57), Expect = 1.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P S + V ++C
Sbjct: 4 LTQSPASLSVATGEKVTIRCM 24
>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 111
Score = 26.2 bits (57), Expect = 1.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
VTQ+P +V L+C
Sbjct: 2 VTQFPSHSVIEKGQTVTLRCD 22
>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 4
[TaxId: 10090]}
Length = 108
Score = 26.2 bits (57), Expect = 1.6
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNS 64
+TQ P + +++ + CR S
Sbjct: 4 LTQSPSYLVASPGETITINCRASKSIS 30
>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Human (Homo sapiens), cluster 1
[TaxId: 9606]}
Length = 109
Score = 26.2 bits (57), Expect = 1.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P S ++ D V + C+
Sbjct: 6 MTQSPSSLSASVGDRVTITCQ 26
>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 26.1 bits (57), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P S +L + V L CR
Sbjct: 4 LTQSPSSLSASLGERVSLTCR 24
>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 1.2 [TaxId: 10090]}
Length = 113
Score = 26.2 bits (57), Expect = 1.7
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
++Q P + + + V + C+
Sbjct: 4 MSQSPSSLAVSAGEKVTMSCK 24
>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 112
Score = 26.3 bits (57), Expect = 1.8
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
V+Q P K V L+C
Sbjct: 2 VSQSPRYKVAKRGQDVALRCD 22
>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 26.4 bits (57), Expect = 1.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
P ++ NL ++V LKC+
Sbjct: 3 FRVSPLDRTWNLGETVELKCQ 23
>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 26.2 bits (57), Expect = 1.8
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P ++ ++V L C+
Sbjct: 4 MTQSPKSMGMSVGEAVTLNCK 24
>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 26.1 bits (57), Expect = 1.8
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREMLQNS 64
+TQ P + +L D V + CR +
Sbjct: 4 LTQTPVSLAASLGDRVTISCRASQDIN 30
>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 114
Score = 26.0 bits (56), Expect = 2.0
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
V Q P + L+C
Sbjct: 2 QVEQSPQSLIILEGKNCTLQCN 23
>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 4
[TaxId: 10090]}
Length = 109
Score = 25.8 bits (56), Expect = 2.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P S ++ ++V + CR
Sbjct: 4 LTQTPVSLSASVGETVTITCR 24
>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 115
Score = 26.0 bits (56), Expect = 2.2
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 37 SVTQYPPQKSHNLTDSVRLKCR 58
+ Q P S +++ + C
Sbjct: 2 LLEQSPQFLSIQEGENLTVYCN 23
>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 115
Score = 26.0 bits (56), Expect = 2.2
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
VTQ S +V + C
Sbjct: 2 VTQTQTSISVMEKTTVTMDCV 22
>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 113
Score = 26.0 bits (56), Expect = 2.4
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
VTQ + V L+C
Sbjct: 3 VTQSSRYLVKRTGEKVFLECV 23
>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma
constant domain 3, CH3-gamma {Mouse (Mus musculus),
gamma2 [TaxId: 10090]}
Length = 102
Score = 25.7 bits (56), Expect = 2.6
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 34 KKPSVTQYPPQKSHNLTDSVRLKC 57
+ P V PP + V L C
Sbjct: 3 RAPQVYVLPPPEEEMTKKQVTLTC 26
>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 25.4 bits (55), Expect = 2.6
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P +L + V + C+
Sbjct: 4 MTQSPSSMYASLGERVTITCK 24
>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 113
Score = 25.5 bits (55), Expect = 2.7
Identities = 5/21 (23%), Positives = 5/21 (23%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
V Q P L C
Sbjct: 4 VVQSPRHIIKEKGGRSVLTCI 24
>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 3.2 [TaxId: 10090]}
Length = 104
Score = 25.5 bits (55), Expect = 2.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P S + + V + C
Sbjct: 3 LTQSPAIMSASPGEKVTMTCS 23
>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 1.1 [TaxId: 10090]}
Length = 112
Score = 25.7 bits (56), Expect = 2.7
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P S + + C+
Sbjct: 4 MTQSPKTISVTIGQPASISCK 24
>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma
constant domain 3, CH3-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 102
Score = 25.3 bits (55), Expect = 2.8
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 34 KKPSVTQYPPQKSHNLTDSVRLKC 57
++P V PP + + V L C
Sbjct: 3 REPQVYTLPPSRDELTKNQVSLTC 26
>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Engineered (including hybrid
species)}
Length = 106
Score = 25.4 bits (55), Expect = 2.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P S ++ D++ + CR
Sbjct: 3 MTQSPSTLSASVGDTITITCR 23
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM
{Yersinia pestis [TaxId: 632]}
Length = 353
Score = 26.3 bits (56), Expect = 3.1
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 42 PPQKSHNLTDSVRLKCREMLQNSIQVGDLDMDGLASLEELATELEE 87
P + + + R+ L +L+ GL+SL EL LE
Sbjct: 17 APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLES 62
>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme)
{Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}
Length = 112
Score = 25.5 bits (55), Expect = 3.2
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
V Q P + +S+ + C
Sbjct: 2 VDQTPRSVTKETGESLTINCV 22
>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 110
Score = 25.3 bits (55), Expect = 3.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
VTQ P K + V L C+
Sbjct: 4 VTQSPRNKVAVTGEKVTLSCQ 24
>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 112
Score = 25.2 bits (54), Expect = 4.3
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+ Q P + L+C
Sbjct: 1 IYQTPRYLVIGTGKKITLECS 21
>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 113
Score = 25.0 bits (54), Expect = 4.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P +L D + CR
Sbjct: 5 MTQTPLYLPVSLGDQASISCR 25
>d1izma_ a.199.1.1 (A:) Hypothetical protein HI0817 {Haemophilus
influenzae [TaxId: 727]}
Length = 170
Score = 25.2 bits (55), Expect = 5.4
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 57 CREMLQNSIQVGDLDMDGLASLEELATELEE----------AIYNEF 93
E + + + L D + EELA LEE Y+ F
Sbjct: 123 IGEAVDDLQDICQLGYDEDDNEEELAEALEEIIEYVRTIAMLFYSHF 169
>g1sse.1 g.78.1.1 (A:,B:) YAP1 redox domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 121
Score = 24.9 bits (54), Expect = 5.4
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 14 SNNKDSSSKKKEAKEEKKEDKKPSVTQYPPQKSHNLTDSV-------RLKCREM---LQN 63
+ SK + + + + ++ + V L+C E+ +
Sbjct: 19 EQVSEFCSKMNQVCGTRNGSSLQNADKINNGNDNDNDNDVVPSKEGSLLRCSEIWDRITT 78
Query: 64 SIQVGDLDMDGLAS 77
+ D+D+DGL S
Sbjct: 79 HPKYSDIDVDGLCS 92
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase
isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 25.2 bits (55), Expect = 5.5
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 3 FIFLFPAPPGISNNKDSSSKKKEAKEEKKEDKKPSVTQYPPQKSHNLTDSVRL 55
+ LFP + + +KK+ +E K ++ P V + Q N ++ L
Sbjct: 49 LLLLFPLTA-----QHENFRKKQIEELKGQEVSPKVY-FMKQTIGNSCGTIGL 95
>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Human (Homo sapiens),
cluster 3.2 [TaxId: 9606]}
Length = 108
Score = 24.8 bits (53), Expect = 5.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 38 VTQYPPQKSHNLTDSVRLKCR 58
+TQ P +S + + L CR
Sbjct: 4 LTQSPGTQSLSPGERATLSCR 24
>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa
variable domain, VL-kappa {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 119
Score = 24.8 bits (53), Expect = 5.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 38 VTQYPPQKSHNLTDSVRLKCREM 60
+TQ P S ++ D V L C+
Sbjct: 4 LTQSPSLLSASVGDRVTLSCKGS 26
>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa
constant domain, CL-kappa {Mouse (Mus musculus) [TaxId:
10090]}
Length = 107
Score = 24.6 bits (53), Expect = 6.1
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 31 KEDKKPSVTQYPPQKSHNLTDSVRLKC 57
+ D P+V+ +PP + + C
Sbjct: 1 RADAAPTVSIFPPSSEQLTSGGASVVC 27
>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma
constant domain 3, CH3-gamma {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 102
Score = 24.2 bits (52), Expect = 6.5
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 34 KKPSVTQYPPQKSHNLTDSVRLKC 57
+ P V P K V + C
Sbjct: 3 RGPQVYTMAPPKEEMTQSQVSITC 26
>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant
domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 24.2 bits (52), Expect = 6.8
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 34 KKPSVTQYPPQKSHNLTDSVRLKC 57
P V PP D V L C
Sbjct: 2 AAPQVYTIPPPLEQMAKDLVSLTC 25
>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH
polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 23.5 bits (51), Expect = 7.3
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 144 SADEPMTTFEMANDEMKTLRNKFIKESIDDAQLATVQGTKTDLLK 188
D M F + DE L KFI + IDD + V ++L+
Sbjct: 6 ECDPAMKQFLLYLDESNALGKKFIIQDIDDTHV-FVIAELVNVLQ 49
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 24.2 bits (51), Expect = 7.5
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 34 KKPSVTQYPPQKSHNLTDSVRLKCREM 60
K P + P + + L+C
Sbjct: 1 KYPVLKDQPAEVLFRENNPTVLECIIE 27
>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein
{Jellyfish (Aequorea aequorea), aequorin [TaxId:
168712]}
Length = 187
Score = 24.9 bits (53), Expect = 8.3
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 57 CREMLQNSIQVGDLDMDGLASLEELATELEEAIYNEFKNTDNRYKNRV 104
E + + +V D+D G ++E+ + Y + Y V
Sbjct: 139 SSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTMDPACEKLYGGAV 186
>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa
constant domain, CL-kappa {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 24.2 bits (52), Expect = 9.0
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 31 KEDKKPSVTQYPPQKSHNLTDSVRLKC 57
+ PSV +PP + + + C
Sbjct: 1 RTVAAPSVFIFPPSDEQLKSGTASVVC 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.127 0.351
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 738,811
Number of extensions: 31616
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 71
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)