BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9963
(800 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
Length = 670
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 224/697 (32%), Positives = 351/697 (50%), Gaps = 45/697 (6%)
Query: 1 MDPGVQPCDNFYKFACGNFLKTSVIPPDRASVSTFSKIEDRLSSQIKTVLEEPQSASGPH 60
MDP V PC +F+ +ACG ++K + +P + TFS + + + IK +LE +AS
Sbjct: 15 MDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAIIKHLLEN-STASVSE 73
Query: 61 IFNLMKKFYATCMDEDTLDKLGVQPMKVIIEQLGGLPVVDGDRWDSSRFSWINTTYKLRD 120
+ +Y CM+E +++L +P+ +IE+LGG W T +D
Sbjct: 74 AERKAQVYYRACMNETRIEELRAKPLMELIERLGG---------------WNITGPWAKD 118
Query: 121 LGFNHNLLINIVFCKQTQHPINTTQIPGAGPDFKNSTRRRLLIDQVDLK-PLEDFLREGW 179
N + +V P + + D KNS + +DQ L P D+
Sbjct: 119 ---NFQDTLQVVTAHYRTSPFFSVYVSA---DSKNSNSNVIQVDQSGLGLPSRDYYLNKT 172
Query: 180 RNKNV-RAYHSYMVKTAVLFGAPVSRAFR-ELKDSIDFEITMTKFIVPDQELRNLSYLYN 237
N+ V Y +YMV+ L G A R +++ +DFE + +P ++ R+ +Y+
Sbjct: 173 ENEKVLTGYLNYMVQLGKLLGGGDEEAIRPQMQQILDFETALANITIPQEKRRDEELIYH 232
Query: 238 LMSVHTLNKYYPSIPCFYLEIDGPSLNKKLEFLNRIIGPKISIDSEELVMVTQPKYMSSI 297
++ L P+I L FLN I P + I+ E ++V +Y+ I
Sbjct: 233 KVTAAELQTLAPAI-------------NWLPFLNTIFYP-VEINESEPIVVYDKEYLEQI 278
Query: 298 ERLVQITPKRILANYMLMQTVLSSSAYLCKSARRPYHDFKYVLTGVNSTRI-RSQRCVDE 356
L+ T + +L NYM+ V +S++L + + F V+ G T + R + CV +
Sbjct: 279 STLINTTDRCLLNNYMIWNLVRKTSSFLDQRFQDADEKFMEVMYGTKKTSLPRWKFCVSD 338
Query: 357 VAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKNALEKSK 416
A+G ++V+ F SK A E++ +++ + L + WMD +T+K+A EK+
Sbjct: 339 TENNLGFALGPMFVKATFAEDSKSIATEIILEIKKAFEESLSTLKWMDEETRKSAKEKAD 398
Query: 417 VLKVHIGYPDELLDDDKIDLHYKDLRIVPGDLLTSVLNLYKKSVDYAYTQLHEPINKTSW 476
+ IGYP+ ++D ++D + D VP + + + S QL + N+ W
Sbjct: 399 AIYNMIGYPNFIMDPKELDKVFNDYTAVPDLYFENAMRFFNFSWRVTADQLRKAPNRDQW 458
Query: 477 KEFGSVATVNAFNHIDKNAIEFPAGILQEPYFAADRPCFLNYGAIGTVIGHEITHTFDDE 536
+ VNA+ KN I FPAGILQ P++ P LN+G IG V+GHE+TH FDD+
Sbjct: 459 SM--TPPMVNAYYSPTKNEIVFPAGILQAPFYTRSSPKALNFGGIGVVVGHELTHAFDDQ 516
Query: 537 GSQYDKFGNVMNWWDDESKMRYNEKASCIIKQYSNYVIEDIGFRINGITTQGENIADNGG 596
G +YDK GN+ WW + S + + C+++QYSNY + G +NG T GENIADNGG
Sbjct: 517 GREYDKDGNLRPWWKNSSVEAFKRQTECMVEQYSNYSVN--GEPVNGRHTLGENIADNGG 574
Query: 597 VKESYRAYLECAKQKNAEYKLPGLENFSDKQMFWISFANVWCTKYRKEAMELLFKNDDHP 656
+K +YRAY K+ AE+ LP L ++ Q+F++ FA VWC+ E+ D H
Sbjct: 575 LKAAYRAYQNWVKKNGAEHSLPTL-GLTNNQLFFLGFAQVWCSVRTPESSHEGLITDPHS 633
Query: 657 PAEIRVNGPLSNSYDFARDFQCYSGSKMNPKHKCEVW 693
P+ RV G LSNS +F+ F+C GS MNP HKCEVW
Sbjct: 634 PSRFRVIGSLSNSKEFSEHFRCPPGSPMNPPHKCEVW 670
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%)
Query: 703 RSQRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTK 762
R + CV + A+G ++V+ F SK A E++ +++ + L + WMD +T+
Sbjct: 331 RWKFCVSDTENNLGFALGPMFVKATFAEDSKSIATEIILEIKKAFEESLSTLKWMDEETR 390
Query: 763 KNALEKSKVLKVHIGYPDELLDDDKIDLHYKDLRIV 798
K+A EK+ + IGYP+ ++D ++D + D V
Sbjct: 391 KSAKEKADAIYNMIGYPNFIMDPKELDKVFNDYTAV 426
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 233/716 (32%), Positives = 361/716 (50%), Gaps = 61/716 (8%)
Query: 1 MDPGVQPCDNFYKFACGNFLKTSVIPPDRASVSTFSKIEDRLSSQIKTVLEEPQSASGPH 60
MD +PC +F+K+ACG +LK +VIP + F + D L +K VL+EP++
Sbjct: 19 MDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIVA 78
Query: 61 IFNLMKKFYATCMDEDTLDKLGVQPMKVIIEQLGGLPVVD-------GDRWDSSR-FSWI 112
+ K Y +C++E +D G +P+ ++ + G PV G W + + + +
Sbjct: 79 V-QKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQL 137
Query: 113 NTTYKLRDLGFNHNLLINIVFCKQTQHPINTTQIPGAGPDFKNSTRRRLLIDQVDLK-PL 171
N+ Y + +LIN+ G D KNS + IDQ L P
Sbjct: 138 NSKYGKK-------VLINLF----------------VGTDDKNSVNHVIHIDQPRLGLPS 174
Query: 172 EDFLR-EGWRNKNVRAYHSYMVKTAVLFGAPVSRAFRELKDSIDFEITMTKFIVPDQELR 230
D+ G + AY +M+ A L + + R D + M K + ++E+
Sbjct: 175 RDYYECTGIYKEACTAYVDFMISVARL----IRQEERLPIDENQLALEMNKVMELEKEIA 230
Query: 231 NLS----------YLYNLMSVHTLNKYYPSIPCFYLEIDGPSLNKKLEFLNRIIGP-KIS 279
N + LYN M++ + F LEI+G + L F N I+ IS
Sbjct: 231 NATAKPEDRNDPMLLYNKMTLAQIQNN------FSLEINGKPFSW-LNFTNEIMSTVNIS 283
Query: 280 IDSEELVMVTQPKYMSSIERLVQITPKRILANYMLMQTVLSSSAYLCKSARRPYHDFKYV 339
I +EE V+V P+Y++ ++ ++ R L N M + ++ + L ++ + + F+
Sbjct: 284 ITNEEDVVVYAPEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKA 343
Query: 340 LTGVNSTRIRSQRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQN 399
L G S +RC + V AVG LYV F SK +L+ +R+ L +
Sbjct: 344 LYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDD 403
Query: 400 VSWMDPQTKKNALEKSKVLKVHIGYPDELL-DDDKIDLHYKDLRIVPGDLLTSVLNLYKK 458
++WMD +TKK A EK+ +K IGYPD+++ +D+K++ Y +L + +++ K
Sbjct: 404 LTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKF 463
Query: 459 SVDYAYTQLHEPINKTSWKEFGSVATVNAFNHIDKNAIEFPAGILQEPYFAADRPCFLNY 518
S +L E ++K W A VNAF +N I FPAGILQ P+F+A + LNY
Sbjct: 464 SQSKQLKKLREKVDKDEW--ISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNY 521
Query: 519 GAIGTVIGHEITHTFDDEGSQYDKFGNVMNWWDDESKMRYNEKASCIIKQYSNYVIEDIG 578
G IG VIGHEITH FDD G ++K G++++WW +S + E++ C++ QY N+ + G
Sbjct: 522 GGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAG 581
Query: 579 FR-INGITTQGENIADNGGVKESYRAYLECAKQKNAEYKLPGLENFSDKQMFWISFANVW 637
+ +NGI T GENIADNGG+ ++YRAY K+ E LPGL+ + KQ+F+++FA VW
Sbjct: 582 GQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLD-LNHKQLFFLNFAQVW 640
Query: 638 CTKYRKEAMELLFKNDDHPPAEIRVNGPLSNSYDFARDFQCYSGSKMNPKHKCEVW 693
C YR E K D H P R+ G L NS +F+ F C S MNP+ KC VW
Sbjct: 641 CGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 705 QRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKN 764
+RC + V AVG LYV F SK +L+ +R+ L +++WMD +TKK
Sbjct: 355 RRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKR 414
Query: 765 ALEKSKVLKVHIGYPDELLDDDK------IDLHYKD 794
A EK+ +K IGYPD+++ +D ++L+YK+
Sbjct: 415 AEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKE 450
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 178/710 (25%), Positives = 295/710 (41%), Gaps = 78/710 (10%)
Query: 1 MDPGVQPCDNFYKFACGNFLKTSVIPPDRASVSTFSKIEDRLSSQIKTVLEEPQSASGPH 60
+D +P D+ + G +L IP DRA+ F + DR +Q++ ++ + A
Sbjct: 50 IDADARPQDDLFGHVNGRWLAEHEIPADRATDGAFRSLFDRAETQVRDLIIQASQAGAAV 109
Query: 61 IFNLMK--KFYATCMDEDTLDKLGVQPMKVIIEQLGGLPVVDGDRWDSSRFSWINTTYKL 118
+ + YA+ +DE+ +++ GVQP+ + I++
Sbjct: 110 GTDAQRIGDLYASFLDEEAVERAGVQPLH-------------------DELATIDSAADA 150
Query: 119 RDLGFNHNLLINIVFCKQTQHPINTTQIPGAGPDFKNSTRRRLLIDQVDLK-PLEDFLRE 177
+L L ++T D K+STR + Q + P E + R+
Sbjct: 151 TELAAALGTLQRAGVGGGIGVYVDT--------DSKDSTRYLVHFTQSGIGLPDESYYRD 202
Query: 178 GWRNKNVRAYHSYMVKTAVLFGAPVSRAFRELKDSI-DFEITMTKFIVPDQELRNLSYLY 236
+ AY ++ + L SR + D I E + + R+ Y
Sbjct: 203 EQHAAVLAAYPGHIARMFGLVYGGESRDHAKTADRIVALETKLADAHWDVVKRRDADLGY 262
Query: 237 NLMSVHTLNKYYPSIPCFYLEIDGPSLNKKLEFLNRIIGPKISIDSEELVMVTQPKYMSS 296
NL + L + ++++ + + D+ ++V QP Y+ +
Sbjct: 263 NLRTFAQLQ----------------TEGAGFDWVSWVTALGSAPDAMTELVVRQPDYLVT 306
Query: 297 IERL---VQITPKRILANYMLMQTVLSSSAYLCKSARRPYHDFKY---VLTGVNSTRIRS 350
L V + + A + L++ + + +L ++ DF++ LTG R R
Sbjct: 307 FASLWASVNVEDWKCWARWRLIR---ARAPWLTRAL--VAEDFEFYGRTLTGAQQLRDRW 361
Query: 351 QRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKN 410
+R V V AVG LYV+ F +K LV+NL++ + + WM PQT++
Sbjct: 362 KRGVSLVENLMGDAVGKLYVQRHFPPDAKSRIDTLVDNLQEAYRISISELDWMTPQTRQR 421
Query: 411 ALEKSKVLKVHIGYPDELLDDDKIDLHYKDLRIVPGDLLTSVLNLYKKSVDYAYTQLHEP 470
AL K +GYP + D Y L I DL +V Y + D +L P
Sbjct: 422 ALAKLNKFTAKVGYPIKWRD-------YSKLAIDRDDLYGNVQRGYAVNHDRELAKLFGP 474
Query: 471 INKTSWKEFGSVATVNAFNHIDKNAIEFPAGILQEPYFAADRPCFLNYGAIGTVIGHEIT 530
+++ W F + TVNA+ + N I FPA ILQ P+F NYG IG VIGHEI
Sbjct: 475 VDRDEW--FMTPQTVNAYYNPGMNEIVFPAAILQPPFFDPQADEAANYGGIGAVIGHEIG 532
Query: 531 HTFDDEGSQYDKFGNVMNWWDDESKMRYNEKASCIIKQYSNYVIEDI-----GFRINGIT 585
H FDD+G++YD GN+++WW D+ + + + +I+QY Y D+ + G
Sbjct: 533 HGFDDQGAKYDGDGNLVDWWTDDDRTEFAARTKALIEQYHAYTPRDLVDHPGPPHVQGAF 592
Query: 586 TQGENIADNGGVKESYRAYLECAKQKNAEYKLPGLENFSDKQMFWISFANVWCTKYRKEA 645
T GENI D GG+ + AY A P ++ + Q + +A +W TK R
Sbjct: 593 TIGENIGDLGGLSIALLAYQLSLNGNPA----PVIDGLTGMQRVFFGWAQIWRTKSRAAE 648
Query: 646 MELLFKNDDHPPAEIRVNGPLSNSYDFARDFQCYSGSK--MNPKHKCEVW 693
D H P E R NG + N F + F ++P+ + +W
Sbjct: 649 AIRRLAVDPHSPPEFRCNGVVRNVDAFYQAFDVTEDDALFLDPQRRVRIW 698
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 11/136 (8%)
Query: 660 IRVNGPLSNSYDFARDFQCYSGSKMNPKHKCEVWKESVNSTRIRSQRCVDEVAEKFSLAV 719
IR P A DF+ Y + + + WK R V V AV
Sbjct: 328 IRARAPWLTRALVAEDFEFYGRTLTGAQQLRDRWK-----------RGVSLVENLMGDAV 376
Query: 720 GSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKNALEKSKVLKVHIGYP 779
G LYV+ F +K LV+NL++ + + WM PQT++ AL K +GYP
Sbjct: 377 GKLYVQRHFPPDAKSRIDTLVDNLQEAYRISISELDWMTPQTRQRALAKLNKFTAKVGYP 436
Query: 780 DELLDDDKIDLHYKDL 795
+ D K+ + DL
Sbjct: 437 IKWRDYSKLAIDRDDL 452
>pdb|1GYG|A Chain A, R32 Closed Form Of Alpha-Toxin From Clostridium
Perfringens Strain Cer89l43
pdb|1GYG|B Chain B, R32 Closed Form Of Alpha-Toxin From Clostridium
Perfringens Strain Cer89l43
pdb|1CA1|A Chain A, Alpha-Toxin From Clostridium Perfringens
Length = 370
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 139 HPINTTQIPGAG----PDFKNSTRRRLLIDQVDLKPLEDFLREGWRNKNVRAYHSYMVKT 194
HP N T + AG F + + I+ V K EDF + +NK+ A+ +
Sbjct: 136 HPANVTAVDSAGHVKFETFAEERKEQYKINTVGCKTNEDFYADILKNKDFNAWSKEYARG 195
Query: 195 AVLFGAPVSRAFRELKDSIDFEITMTKFIVPDQELRNLSYLYNLM 239
G + + + S D K + + + Y+Y +
Sbjct: 196 FAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFL 240
>pdb|3ORJ|A Chain A, Crystal Structure Of A Sugar-Binding Protein
(Bacova_04391) From Bacteroides Ovatus At 2.16 A
Resolution
Length = 439
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 257 EIDGPSLNKKLEFLNRIIGPKISIDSEELVMVTQPKYM 294
+I G S +K+ EFL++ KI ID+ +V +T+P+Y
Sbjct: 392 KITGASSDKETEFLSKATSVKIYIDNWRVVPLTKPEYT 429
>pdb|2PVA|A Chain A, Oxidized Penicillin V Acylase From B. Sphaericus
pdb|2PVA|B Chain B, Oxidized Penicillin V Acylase From B. Sphaericus
pdb|2PVA|C Chain C, Oxidized Penicillin V Acylase From B. Sphaericus
pdb|2PVA|D Chain D, Oxidized Penicillin V Acylase From B. Sphaericus
Length = 345
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 47 KTVLEEPQSASGPHIFNLMKKFYATCMDEDTLDKLGVQPMKVIIEQLGGLPVVD 100
KT +EP+ +G L +AT DE G+ P+ VI + LG VD
Sbjct: 74 KTYADEPKKGTGLMGAMLYYATFATYADEPKKGTTGINPVYVISQVLGNCVTVD 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,637,118
Number of Sequences: 62578
Number of extensions: 1064988
Number of successful extensions: 2528
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2499
Number of HSP's gapped (non-prelim): 20
length of query: 800
length of database: 14,973,337
effective HSP length: 107
effective length of query: 693
effective length of database: 8,277,491
effective search space: 5736301263
effective search space used: 5736301263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)