RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9963
(800 letters)
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 695 bits (1795), Expect = 0.0
Identities = 222/705 (31%), Positives = 346/705 (49%), Gaps = 39/705 (5%)
Query: 1 MDPGVQPCDNFYKFACGNFLKTSVIPPDRASVSTFSKIEDRLSSQIKTVLEEPQSASGPH 60
MD +PC +F+K+ACG +LK +VIP + F + D L +K VL+EP++
Sbjct: 19 MDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIV- 77
Query: 61 IFNLMKKFYATCMDEDTLDKLGVQPMKVIIEQLGGLPVVDGDRWDSSRFSW-INTTYKLR 119
K Y +C++E +D G +P+ ++ + G PV + SW
Sbjct: 78 AVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQL 137
Query: 120 DLGFNHNLLINIVFCKQTQHPINTTQIPGAGPDFKNSTRRRLLIDQVDLK-PLEDFLREG 178
+ + +LIN+ G D KNS + IDQ L P D+
Sbjct: 138 NSKYGKKVLINL----------------FVGTDDKNSVNHVIHIDQPRLGLPSRDYYECT 181
Query: 179 WRNKNVR-AYHSYMVKTAVLFGAPV------SRAFRELKDSIDFEITMTKFIVPDQELRN 231
K AY +M+ A L ++ E+ ++ E + ++ +
Sbjct: 182 GIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRND 241
Query: 232 LSYLYNLMSVHTLNKYYPSIPCFYLEIDGPSLNKKLEFLNRIIGP-KISIDSEELVMVTQ 290
LYN M++ + + +G + F N I+ ISI +EE V+V
Sbjct: 242 PMLLYNKMTLAQIQNNFSLEI------NGKPFSWL-NFTNEIMSTVNISITNEEDVVVYA 294
Query: 291 PKYMSSIERLVQITPKRILANYMLMQTVLSSSAYLCKSARRPYHDFKYVLTGVNSTRIRS 350
P+Y++ ++ ++ R L N M + ++ + L ++ + + F+ L G S
Sbjct: 295 PEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYGTTSETATW 354
Query: 351 QRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKN 410
+RC + V AVG LYV F SK +L+ +R+ L +++WMD +TKK
Sbjct: 355 RRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKR 414
Query: 411 ALEKSKVLKVHIGYPDELL-DDDKIDLHYKDLRIVPGDLLTSVLNLYKKSVDYAYTQLHE 469
A EK+ +K IGYPD+++ +D+K++ Y +L + +++ K S +L E
Sbjct: 415 AEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLRE 474
Query: 470 PINKTSWKEFGSVATVNAFNHIDKNAIEFPAGILQEPYFAADRPCFLNYGAIGTVIGHEI 529
++K W A VNAF +N I FPAGILQ P+F+A + LNYG IG VIGHEI
Sbjct: 475 KVDKDEW--ISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEI 532
Query: 530 THTFDDEGSQYDKFGNVMNWWDDESKMRYNEKASCIIKQYSNYVIEDI-GFRINGITTQG 588
TH FDD G ++K G++++WW +S + E++ C++ QY N+ + G +NGI T G
Sbjct: 533 THGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLG 592
Query: 589 ENIADNGGVKESYRAYLECAKQKNAEYKLPGLENFSDKQMFWISFANVWCTKYRKEAMEL 648
ENIADNGG+ ++YRAY K+ E LPGL + + KQ+F+++FA VWC YR E
Sbjct: 593 ENIADNGGLGQAYRAYQNYIKKNGEEKLLPGL-DLNHKQLFFLNFAQVWCGTYRPEYAVN 651
Query: 649 LFKNDDHPPAEIRVNGPLSNSYDFARDFQCYSGSKMNPKHKCEVW 693
K D H P R+ G L NS +F+ F C S MNP+ KC VW
Sbjct: 652 SIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696
Score = 113 bits (284), Expect = 4e-26
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 703 RSQRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTK 762
+RC + V AVG LYV F SK +L+ +R+ L +++WMD +TK
Sbjct: 353 TWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETK 412
Query: 763 KNALEKSKVLKVHIGYPDELL-DDDKIDLHYKDLRI 797
K A EK+ +K IGYPD+++ +D+K++ Y +L
Sbjct: 413 KRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNY 448
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 677 bits (1750), Expect = 0.0
Identities = 219/697 (31%), Positives = 348/697 (49%), Gaps = 45/697 (6%)
Query: 1 MDPGVQPCDNFYKFACGNFLKTSVIPPDRASVSTFSKIEDRLSSQIKTVLEEPQSASGPH 60
MDP V PC +F+ +ACG ++K + +P + TFS + + + IK +LE ++
Sbjct: 15 MDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAIIKHLLENSTASVSE- 73
Query: 61 IFNLMKKFYATCMDEDTLDKLGVQPMKVIIEQLGGLPVVDGDRWDSSRFSWINTTYKLRD 120
+ +Y CM+E +++L +P+ +IE+LGG + W F T ++
Sbjct: 74 AERKAQVYYRACMNETRIEELRAKPLMELIERLGGWNITGP--WAKDNFQD---TLQVVT 128
Query: 121 LGFNHNLLINIVFCKQTQHPINTTQIPGAGPDFKNSTRRRLLIDQVDLK-PLEDFLREGW 179
+ + ++ D KNS + +DQ L P D+
Sbjct: 129 AHYRTSPFFSV----------------YVSADSKNSNSNVIQVDQSGLGLPSRDYYLNKT 172
Query: 180 RNKNVR-AYHSYMVKTAVLFGAPVSRAFRE-LKDSIDFEITMTKFIVPDQELRNLSYLYN 237
N+ V Y +YMV+ L G A R ++ +DFE + +P ++ R+ +Y+
Sbjct: 173 ENEKVLTGYLNYMVQLGKLLGGGDEEAIRPQMQQILDFETALANITIPQEKRRDEELIYH 232
Query: 238 LMSVHTLNKYYPSIPCFYLEIDGPSLNKKLEFLNRIIGPKISIDSEELVMVTQPKYMSSI 297
++ L P+I L FLN I P + I+ E ++V +Y+ I
Sbjct: 233 KVTAAELQTLAPAINW-------------LPFLNTIFYP-VEINESEPIVVYDKEYLEQI 278
Query: 298 ERLVQITPKRILANYMLMQTVLSSSAYLCKSARRPYHDFKYVLTGVNSTRI-RSQRCVDE 356
L+ T + +L NYM+ V +S++L + + F V+ G T + R + CV +
Sbjct: 279 STLINTTDRCLLNNYMIWNLVRKTSSFLDQRFQDADEKFMEVMYGTKKTSLPRWKFCVSD 338
Query: 357 VAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKNALEKSK 416
A+G ++V+ F SK A E++ +++ + L + WMD +T+K+A EK+
Sbjct: 339 TENNLGFALGPMFVKATFAEDSKSIATEIILEIKKAFEESLSTLKWMDEETRKSAKEKAD 398
Query: 417 VLKVHIGYPDELLDDDKIDLHYKDLRIVPGDLLTSVLNLYKKSVDYAYTQLHEPINKTSW 476
+ IGYP+ ++D ++D + D VP + + + S QL + N+ W
Sbjct: 399 AIYNMIGYPNFIMDPKELDKVFNDYTAVPDLYFENAMRFFNFSWRVTADQLRKAPNRDQW 458
Query: 477 KEFGSVATVNAFNHIDKNAIEFPAGILQEPYFAADRPCFLNYGAIGTVIGHEITHTFDDE 536
+ VNA+ KN I FPAGILQ P++ P LN+G IG V+GHE+TH FDD+
Sbjct: 459 --SMTPPMVNAYYSPTKNEIVFPAGILQAPFYTRSSPKALNFGGIGVVVGHELTHAFDDQ 516
Query: 537 GSQYDKFGNVMNWWDDESKMRYNEKASCIIKQYSNYVIEDIGFRINGITTQGENIADNGG 596
G +YDK GN+ WW + S + + C+++QYSNY + G +NG T GENIADNGG
Sbjct: 517 GREYDKDGNLRPWWKNSSVEAFKRQTECMVEQYSNYSVN--GEPVNGRHTLGENIADNGG 574
Query: 597 VKESYRAYLECAKQKNAEYKLPGLENFSDKQMFWISFANVWCTKYRKEAMELLFKNDDHP 656
+K +YRAY K+ AE+ LP L ++ Q+F++ FA VWC+ E+ D H
Sbjct: 575 LKAAYRAYQNWVKKNGAEHSLPTL-GLTNNQLFFLGFAQVWCSVRTPESSHEGLITDPHS 633
Query: 657 PAEIRVNGPLSNSYDFARDFQCYSGSKMNPKHKCEVW 693
P+ RV G LSNS +F+ F+C GS MNP HKCEVW
Sbjct: 634 PSRFRVIGSLSNSKEFSEHFRCPPGSPMNPPHKCEVW 670
Score = 118 bits (298), Expect = 9e-28
Identities = 27/95 (28%), Positives = 51/95 (53%)
Query: 703 RSQRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTK 762
R + CV + A+G ++V+ F SK A E++ +++ + L + WMD +T+
Sbjct: 331 RWKFCVSDTENNLGFALGPMFVKATFAEDSKSIATEIILEIKKAFEESLSTLKWMDEETR 390
Query: 763 KNALEKSKVLKVHIGYPDELLDDDKIDLHYKDLRI 797
K+A EK+ + IGYP+ ++D ++D + D
Sbjct: 391 KSAKEKADAIYNMIGYPNFIMDPKELDKVFNDYTA 425
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 639 bits (1650), Expect = 0.0
Identities = 170/705 (24%), Positives = 282/705 (40%), Gaps = 68/705 (9%)
Query: 1 MDPGVQPCDNFYKFACGNFLKTSVIPPDRASVSTFSKIEDRLSSQIKTVLEEPQSASGPH 60
+D +P D+ + G +L IP DRA+ F + DR +Q++ ++ + A
Sbjct: 50 IDADARPQDDLFGHVNGRWLAEHEIPADRATDGAFRSLFDRAETQVRDLIIQASQAGAAV 109
Query: 61 IFNLMK--KFYATCMDEDTLDKLGVQPMKVIIEQLGGLPVVDGDRWDSSRFSWINTTYKL 118
+ + YA+ +DE+ +++ GVQP+ + + L
Sbjct: 110 GTDAQRIGDLYASFLDEEAVERAGVQPLHDELATIDSAA---------DATELAAALGTL 160
Query: 119 RDLGFNHNLLINIVFCKQTQHPINTTQIPGAGPDFKNSTRRRLLIDQVDLK-PLEDFLRE 177
+ G I + D K+STR + Q + P E + R+
Sbjct: 161 QRAGVG--GGIGV----------------YVDTDSKDSTRYLVHFTQSGIGLPDESYYRD 202
Query: 178 GWRNKNVRAYHSYMVKTAVL-FGAPVSRAFRELKDSIDFEITMTKFIVPDQELRNLSYLY 236
+ AY ++ + L +G + + E + + R+ Y
Sbjct: 203 EQHAAVLAAYPGHIARMFGLVYGGESRDHAKTADRIVALETKLADAHWDVVKRRDADLGY 262
Query: 237 NLMSVHTLNKYYPSIPCFYLEIDGPSLNKKLEFLNRIIGPKISIDSEELVMVTQPKYMSS 296
NL + L + ++ + + D+ ++V QP Y+ +
Sbjct: 263 NLRTFAQLQTEGAGFDW-------------VSWVTALG---SAPDAMTELVVRQPDYLVT 306
Query: 297 IERLVQITPKRILANYMLMQTVLSSSAYLCKSARRPYHDF-KYVLTGVNSTRIRSQRCVD 355
L + + + + + +L ++ +F LTG R R +R V
Sbjct: 307 FASLWASVNVEDWKCWARWRLIRARAPWLTRALVAEDFEFYGRTLTGAQQLRDRWKRGVS 366
Query: 356 EVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKNALEKS 415
V AVG LYV+ F +K LV+NL++ + + WM PQT++ AL K
Sbjct: 367 LVENLMGDAVGKLYVQRHFPPDAKSRIDTLVDNLQEAYRISISELDWMTPQTRQRALAKL 426
Query: 416 KVLKVHIGYPDELLDDDKIDLHYKDLRIVPGDLLTSVLNLYKKSVDYAYTQLHEPINKTS 475
+GYP + D Y L I DL +V Y + D +L P+++
Sbjct: 427 NKFTAKVGYPIKWRD-------YSKLAIDRDDLYGNVQRGYAVNHDRELAKLFGPVDRDE 479
Query: 476 WKEFGSVATVNAFNHIDKNAIEFPAGILQEPYFAADRPCFLNYGAIGTVIGHEITHTFDD 535
W F + TVNA+ + N I FPA ILQ P+F NYG IG VIGHEI H FDD
Sbjct: 480 W--FMTPQTVNAYYNPGMNEIVFPAAILQPPFFDPQADEAANYGGIGAVIGHEIGHGFDD 537
Query: 536 EGSQYDKFGNVMNWWDDESKMRYNEKASCIIKQYSNYVIEDI-----GFRINGITTQGEN 590
+G++YD GN+++WW D+ + + + +I+QY Y D+ + G T GEN
Sbjct: 538 QGAKYDGDGNLVDWWTDDDRTEFAARTKALIEQYHAYTPRDLVDHPGPPHVQGAFTIGEN 597
Query: 591 IADNGGVKESYRAYLECAKQKNAEYKLPGLENFSDKQMFWISFANVWCTKYRKEAMELLF 650
I D GG+ + AY A P ++ + Q + +A +W TK R
Sbjct: 598 IGDLGGLSIALLAYQLSLNGNPA----PVIDGLTGMQRVFFGWAQIWRTKSRAAEAIRRL 653
Query: 651 KNDDHPPAEIRVNGPLSNSYDFARDFQCYSGSKM--NPKHKCEVW 693
D H P E R NG + N F + F + +P+ + +W
Sbjct: 654 AVDPHSPPEFRCNGVVRNVDAFYQAFDVTEDDALFLDPQRRVRIW 698
Score = 109 bits (273), Expect = 1e-24
Identities = 31/93 (33%), Positives = 45/93 (48%)
Query: 703 RSQRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTK 762
R +R V V AVG LYV+ F +K LV+NL++ + + WM PQT+
Sbjct: 360 RWKRGVSLVENLMGDAVGKLYVQRHFPPDAKSRIDTLVDNLQEAYRISISELDWMTPQTR 419
Query: 763 KNALEKSKVLKVHIGYPDELLDDDKIDLHYKDL 795
+ AL K +GYP + D K+ + DL
Sbjct: 420 QRALAKLNKFTAKVGYPIKWRDYSKLAIDRDDL 452
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 5e-10
Identities = 91/637 (14%), Positives = 197/637 (30%), Gaps = 158/637 (24%)
Query: 151 PDFKNSTRRRLLIDQVDLKPLEDFLREGWRNKNVRAYHSYMVKTAVLFGAPVSRAFRELK 210
F+++ +D D K ++D + + + H M K VS R
Sbjct: 23 SVFEDA-----FVDNFDCKDVQDMPKSILSKEEID--HIIMSKD------AVSGTLRLFW 69
Query: 211 DSIDFEITMTKFIVPDQELRNLSYLYNLMSVHTLNKYYPSIPCFYLEIDGPSLNKKL--E 268
+ + M + V + N +L + + T E PS+ ++ E
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMS--PIKT-------------EQRQPSMMTRMYIE 114
Query: 269 FLNRIIGPKISIDSEELVMVTQPKYMSSIERLVQITPKRILANYMLMQTVLSSSAYLC-- 326
+R+ D++ KY ++ RL R L++ L + +
Sbjct: 115 QRDRLYN-----DNQVF-----AKY--NVSRLQPYLKLRQ----ALLE--LRPAKNVLID 156
Query: 327 ------KSARRPYHDFKYVLTG--VNSTRIRSQRCVDEVAEKFSLAVGSLYVRHFFDRTS 378
K+ + S +++ + ++ F L + + S
Sbjct: 157 GVLGSGKT----------WVALDVCLSYKVQCKMD-FKI---FWLNLKN--------CNS 194
Query: 379 KENALELVNNLRQEMDYIL-QNVSWMD--PQTKKNALEKSKVLKVHIGYPDEL--LDD-- 431
E LE++ L ++D + + + L Y + L L +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 432 DKIDLHYKDL--RIVPGDLLTSVLNLYKKSVDY--AYTQLHEPINKTSWKEFGSVATVNA 487
+ + +L +I LLT+ +K+ D+ A T H ++ S +
Sbjct: 255 NAKAWNAFNLSCKI----LLTT---RFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSL 306
Query: 488 F-NHIDKNAIEFPAGILQ-EPY----FAA---DRPC------FLNYGAIGTVIGHEITH- 531
++D + P +L P A D +N + T+I +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 532 TFDDEGSQYDKFG----NV--------MNWW-----DDESKMRYNEKASCIIKQYSN--Y 572
+ +D+ + + W+ D + K S + KQ
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 573 VIEDIGFRINGITTQGENIAD-NGGVKESYRAYLECAKQKNAEYKLPGLENFSDKQMFW- 630
I I + + EN + + + Y K +++ +P + D+ +
Sbjct: 427 SIPSIYLE---LKVKLENEYALHRSIVDHYNIP----KTFDSDDLIP---PYLDQYFYSH 476
Query: 631 ISFANVWCTKYRKEAM-ELLFKNDDHPPAEIRVNGPLSNSYDFARDFQCYSGSKMNPKHK 689
I + + ++F + +IR + N+ SGS +N +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA----------SGSILNTLQQ 526
Query: 690 CEVWKESVNSTRIRSQRCVDEVAEKFSLAVGSLYVRH 726
+ +K + + +R V+ + F + +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICS 562
Score = 57.6 bits (138), Expect = 2e-08
Identities = 73/532 (13%), Positives = 158/532 (29%), Gaps = 134/532 (25%)
Query: 335 DFKYVLTGVNSTR-IRSQRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEM 393
D K V + + I S+ +D + G+L + +E + V + +
Sbjct: 34 DCKDVQ---DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI- 89
Query: 394 DYILQNVSWMDPQTKKNALEKSKVLKVHIGYPDELLDDDKIDLHYKDLRIVPGDLLTSVL 453
+Y ++ K + S + +++I D L +D+++ Y R+ P L L
Sbjct: 90 NY-----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 454 -NLYK-------------KSV-------DYAYTQLHEPINKTSWKEFGSVATVNAFNHID 492
L K+ Y + K W + +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--FKIFWLNLKNC-------NSP 195
Query: 493 KNAIEFPAGILQEPYFAADRPCFLNYGAIGTVIGHEITHTFDDEGSQYDKFGNVMNWWDD 552
+ +E +LQ+ ++I + ++
Sbjct: 196 ETVLE----MLQKLL-------------------YQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 553 ESK--MRYNEKASCII---KQYSNYVIE--DIGFRINGITTQGENIADNGGVKESYRAYL 605
E + ++ +C++ + ++ +I +TT+ + + D + L
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISL 291
Query: 606 E--------------CAKQKNAEY-KLP-----------GL--ENFSDKQMFWISFANVW 637
+ K + LP + E+ D W ++ +V
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 638 CTKYRKEAMELLFKNDDHPPAEIRVNGPLSNSY-DFARDFQCYSGSKMNPKHKCEVWKES 696
C K +E + PAE R + + F + + +W +
Sbjct: 352 CDKL-TTIIESSLNVLE--PAEYR------KMFDRLSV-FP--PSAHIPTILLSLIWFDV 399
Query: 697 VNSTRIRSQRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSW 756
+ V V K L SL + + T ++ L ++ E +Y L S
Sbjct: 400 -------IKSDVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SI 449
Query: 757 MDPQTKKNALEKSKVLKV--------HIGY-PDELLDDDKIDLH---YKDLR 796
+D + ++ HIG+ + +++ L + D R
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Score = 57.2 bits (137), Expect = 2e-08
Identities = 65/454 (14%), Positives = 142/454 (31%), Gaps = 139/454 (30%)
Query: 403 MDPQTKKNALEKSKVLKVHIGYPDELLDDDKIDLHYKDLRIVPGDLLTSVLNLYKKSVDY 462
MD +T ++ + +L V D + KD++ D+ S+L+ K+ +D+
Sbjct: 7 MDFETGEHQYQYKDILSV-------FEDAFVDNFDCKDVQ----DMPKSILS--KEEIDH 53
Query: 463 AYTQLHEPINKTSWKEFGSVATVNAFNHIDKNAIE-FPAGILQEPYFAADRPCFLNYGAI 521
++ T + F ++ + + ++ F +L+ NY +
Sbjct: 54 IIMSKD-AVSGT-LRLFWTLLSKQ------EEMVQKFVEEVLRI-----------NYKFL 94
Query: 522 GTVIGHEITHTFDDEGSQYDKFGNVMNWWDDESKMRYN----EKASCIIK-----QYSNY 572
+ I E Y + + + + D++ +YN + + + + +
Sbjct: 95 MSPIKTEQRQPSMMT-RMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 573 VIEDIGFRINGITTQGENIADNGGVKESYRAYLECAKQKNAEYKLPGLENFSDKQMFWIS 632
V+ I+G+ G +++ A C K ++ D ++FW++
Sbjct: 153 VL------IDGV----------LGSGKTWVALDVCLSYK--------VQCKMDFKIFWLN 188
Query: 633 FANVWCTKYRKEAMELL---FKNDDHPPAEIRVNGPLS--NSYDFARDFQCYSGSKMNPK 687
N + E ++ L + ++ N L + R SK
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---SKPYE- 244
Query: 688 HKC-----EVW-KESVNS----------TRIRSQRCVDEVAEKFSLAVGS-LYVRHFFDR 730
C V ++ N+ TR + V + S A + + + H
Sbjct: 245 -NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ------VTDFLSAATTTHISLDHHSMT 297
Query: 731 TSKENALEL--------VNNLRQEM----------------DYILQNVSWMDPQTKK--N 764
+ + L +L +E+ D + +W K
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 765 ALEKS-KVLKVHIGYPDELLDDDKIDLHYKDLRI 797
+E S VL+ P E + L +
Sbjct: 358 IIESSLNVLE-----PAEYRK------MFDRLSV 380
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 2e-08
Identities = 89/533 (16%), Positives = 166/533 (31%), Gaps = 202/533 (37%)
Query: 343 VNSTRIRSQRCVDEVAEKFSLAVGSLYVR-------HF--------FDRT----SKENA- 382
+++ R +L+ GSL F F++ ++ A
Sbjct: 1 MDAYSTRP----------LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 383 -------LELVNNLRQEMDYILQNVSWMDPQTKKNALEKSKVLKVHIGY-PDELLDDDKI 434
ELV + Y+ V +P + VL + + + L+ +
Sbjct: 51 DDEPTTPAELVGKF---LGYVSSLV---EPSKVGQFDQ---VLNLCLTEFENCYLEGN-- 99
Query: 435 DLHYKDLRIV---PGDLLTSVLNLYKKSVDYAYTQLHEPINKTSWKEFGSVATVNA-FNH 490
D+H + + T+++ K + Y + K+ S A F
Sbjct: 100 DIH----ALAAKLLQENDTTLVK--TKELIKNYITARIMAKRPFDKKSNS-----ALFRA 148
Query: 491 IDKNAIEFPA---GILQ---EPYFAADRPCFLNYGA-IGTVIG------HEITHTFDDEG 537
+ + + A G Q + YF R + Y +G +I E+ T D
Sbjct: 149 VGEGNAQLVAIFGG--QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 538 SQYDKFGNVMNWWDDESK---MRYNEKA--SC-IIK--QYSNYVI--EDIGF-------R 580
+ + N++ W ++ S Y SC +I Q ++YV+ + +GF
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 581 INGITTQGENI--------ADNGGVKESYRAYLECAKQKNAEYKLPGLENFSDKQMFWIS 632
+ G T + + D S+ ++ ++ + +F+I
Sbjct: 267 LKGATGHSQGLVTAVAIAETD------SWESFFVSVRK--------AITV-----LFFIG 307
Query: 633 FANVWCTKY--------------------------------RKEAMELLFKNDDHPPAEI 660
C + +++ + + K + H PA
Sbjct: 308 VR---CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 661 RVNGPLSNSYDFARDFQCYSGSKMNP-----------KHKCEVWKESVNSTRIR-SQRCV 708
+V L N A++ SG P K K ++ +RI S+R
Sbjct: 365 QVEISLVNG---AKNLVV-SG---PPQSLYGLNLTLRKAKAP---SGLDQSRIPFSER-- 412
Query: 709 DEVAEKFS---LAVGSLYVRHFFDRTSK--ENALELVNNLRQEMDYILQNVSW 756
KFS L V S + H S A +L+N D + NVS+
Sbjct: 413 ---KLKFSNRFLPVASPF--H-----SHLLVPASDLINK-----DLVKNNVSF 450
Score = 53.5 bits (128), Expect = 3e-07
Identities = 52/321 (16%), Positives = 96/321 (29%), Gaps = 97/321 (30%)
Query: 145 QIPGAGPDF-KNSTRRRLLIDQVDLKPLEDFLREGWRNKN-VRAYHSYMVKTAVLFGAPV 202
Q G G D K S + + ++ D + + G+ + V + V + FG
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTY---GFSILDIVI---NNPVNLTIHFGGEK 1680
Query: 203 SRAFRELKDSIDFEITMTKFIVPDQELRNLSYLYNLMSVHTLNKYYPSIPCFYLEIDGPS 262
+ RE ++ FE + + ++ + ++ Y F
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEIN--------EHSTSY-----TFR----SEK 1723
Query: 263 LNKKLEFLNRIIGPKISIDSEELVMVTQPKYMSSIERLVQITPKRILANYMLMQTVLS-- 320
L+ TQP L++ L + L+ +
Sbjct: 1724 -----GLLS-------------ATQFTQPALT-----LMEKAAFEDLKSKGLIPADATFA 1760
Query: 321 --S----SAYLCKSARRPYHDFKYVLT---GVNSTRIR---SQRCV--DEVAEKFS--LA 364
S +A L A V++ V R Q V DE+ +A
Sbjct: 1761 GHSLGEYAA-LASLAD--------VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 365 VGSLYVRHFFDRTSKENALELVNNLRQEMDYILQ----NVSWMDPQT----KKNALEK-S 415
+ V F + E +V + + ++++ NV + Q AL+ +
Sbjct: 1812 INPGRVAASFSQ---EALQYVVERVGKRTGWLVEIVNYNVE--NQQYVAAGDLRALDTVT 1866
Query: 416 KVLKVHIGYPDELLDDDKIDL 436
VL I KID+
Sbjct: 1867 NVLN-FIKLQ-------KIDI 1879
Score = 53.1 bits (127), Expect = 4e-07
Identities = 97/592 (16%), Positives = 178/592 (30%), Gaps = 202/592 (34%)
Query: 17 GNFLKTSV-IPPD---RASV--STFSKI----EDRLSSQIKTVLEEPQSASGPHIFNLMK 66
G+ L+ + +P AS F+KI + ++ +EP + + L+
Sbjct: 14 GS-LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD-----DEPTTPAE-----LVG 62
Query: 67 KF--YATCMDEDTLDKLGVQPMKVIIEQLGGLPVVDGDRWDSSRFSWINTTYKLRDLGFN 124
KF Y + + E + Q + + + + F Y L N
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTE----------------F---ENCY----LEGN 99
Query: 125 --HNLLINIVFCKQTQHPINTTQIPGAGPDFKNSTRRRLLIDQVDLKPLEDFLREGWRNK 182
H L ++ N T + KN R++ + K L
Sbjct: 100 DIHALAAKLL-------QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 183 NVRAYHSYMVKTAVLFG--APVSRAFRELKDSIDFEITMTKFIVPDQELRNL--SY---- 234
N + +FG F +ELR+L +Y
Sbjct: 153 NAQLV--------AIFGGQGNTDDYF--------------------EELRDLYQTYHVLV 184
Query: 235 ----------LYNLM-SVHTLNKYYPSIPCFYLEI----DGPSLNKKLEFLNRIIGPKIS 279
L L+ + K + L I + PS ++L I P IS
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQ----GLNILEWLENPSNTPDKDYLLSI--P-IS 237
Query: 280 IDSEELVMVTQ-PKYMSSIERLVQITPKRILANY----MLMQTVLSSSAY-LCKSARRPY 333
L+ V Q Y+ + +L+ TP + + Q ++++ A S +
Sbjct: 238 C---PLIGVIQLAHYVVTA-KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 334 HDFKYVLT-----GVNSTRIRSQRCVDEVAEKFSLAVGS------LYVRHFFDRTSKENA 382
+ +T GV + + SL L + + + ++
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQDY 352
Query: 383 LELVN-NLRQEMD-YI-LQN------VS-----------WMDPQTKKNALEKSKV----- 417
+ N +L I L N VS + + L++S++
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 418 -LKVH-----IGYP----------DELLDD---DKIDLHYKDLRIVP------G-DLLTS 451
LK + P D + D + + + KD++I P G DL
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYDTFDGSDLRVL 471
Query: 452 VLNLYKKSVDYAYTQLHEPINKTSWKEFGSVATVNAFNHIDKNAIEF-PAGI 502
++ ++ VD + P+ W+ T HI ++F P G
Sbjct: 472 SGSISERIVD---CIIRLPVK---WET----TTQFKATHI----LDFGPGGA 509
Score = 37.0 bits (85), Expect = 0.028
Identities = 39/245 (15%), Positives = 70/245 (28%), Gaps = 91/245 (37%)
Query: 289 TQPKYMSSIERLVQITPK------------RILANYMLMQTVLSSSAYLCKSARRPYHDF 336
+ Y SI +V P RI NY M + + + + +
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM--IFETIVDGKLKTEKIFKEI 1710
Query: 337 KYVLTGV---------NSTRIRSQRC--VDEVA------EKF-----------SL----- 363
T ++T+ +Q + E A K SL
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQF-TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 364 --AV-GSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKN----ALEKSK 416
++ + S E+ +E+V R +Q D + N A+
Sbjct: 1770 LASLADVM---------SIESLVEVV-FYRGMT---MQVAVPRDELGRSNYGMIAINPG- 1815
Query: 417 VLKVHIGYPDELLDD--DKIDLHYKD-LRIV----PG------------DLLTSVLNLYK 457
+V + E L +++ + IV D +T+VLN K
Sbjct: 1816 --RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 458 -KSVD 461
+ +D
Sbjct: 1874 LQKID 1878
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 35.1 bits (81), Expect = 0.095
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 11/34 (32%)
Query: 521 IGTVIGHEITHTFDDEGSQYDKFGNV--MNWWDD 552
I + HE+ H + FGN+ M WW+D
Sbjct: 302 ITMTVAHELAHQW---------FGNLVTMEWWND 326
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 35.2 bits (81), Expect = 0.096
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 11/34 (32%)
Query: 521 IGTVIGHEITHTFDDEGSQYDKFGNV--MNWWDD 552
+ VI HE+ H + FGN+ M WW+D
Sbjct: 364 VTRVIAHELAHQW---------FGNLVTMEWWND 388
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 35.0 bits (81), Expect = 0.100
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 11/34 (32%)
Query: 521 IGTVIGHEITHTFDDEGSQYDKFGNV--MNWWDD 552
VI HEI H Q+ FG++ M WW+D
Sbjct: 259 SANVIAHEIAH-------QW--FGDLVTMKWWND 283
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 31.3 bits (71), Expect = 1.4
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 497 EFPAGILQEPYFAADRPCFLNY-GAIGTVIGHEITHTFDDEGSQYDKFGN--VMNWWDD 552
FP G ++ P P L ++ VI H+I+H++ GN WD
Sbjct: 270 SFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHQISHSW---------TGNLVTNKTWDH 319
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 31.3 bits (71), Expect = 1.6
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
Query: 497 EFPAGILQEPYFAADRPCFLNY-GAIGTVIGHEITHTFDDEGSQYDKFGN--VMNWWDD 552
+P G ++ P P L + + VI HE+ H++ GN W+
Sbjct: 270 SYPYGGMESPNMTFATPTLLAHDRSNIDVIAHELAHSW---------SGNLVTNCSWNH 319
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A
{Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A*
3sdv_A*
Length = 817
Score = 31.1 bits (69), Expect = 2.1
Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 12/171 (7%)
Query: 451 SVLNLYKKSVDYAYTQLH---EPINKTSWKEFGSVATVNAFNHIDKNAIEFPAGILQEPY 507
L L K +D+ Q E N TSW + A EP
Sbjct: 490 KFLELGK--LDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERPLEFYFLVAAGTYEPQ 547
Query: 508 FAADRPCFLNYGAIGTVIGHEITHTFDDEGS--QYDKFGNVMNWWDDESKMRYNEKASCI 565
+A R F + TV + +D G+ + F + WD +
Sbjct: 548 YAKCRFLFTKVACLQTV----LDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLC 603
Query: 566 IKQYSNYVIEDIGFRINGITTQGENIADNGGVKESYRAYLECAKQKNAEYK 616
+ Y + ++ ++ + + G ++ Y E A+ AEY
Sbjct: 604 YQIYYD-IVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYV 653
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 30.1 bits (68), Expect = 2.9
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 497 EFPAGILQEPYFAADRPCFLNY-GAIGTVIGHEITHTFDDEGSQYDKFGN--VMNWWDD 552
FP G ++ P + P + ++ +I HE+ H++ GN W D
Sbjct: 269 SFPFGGMENPRLSFITPTVVAGDKSLVNLIAHELAHSW---------SGNLVTNESWRD 318
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 29.9 bits (67), Expect = 3.4
Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 26/190 (13%)
Query: 378 SKENALELVNNLRQEMD-----YILQNVSWMDPQTKKNALEKSKVLKVHIGY-PDELLDD 431
+ + L++ +R D ++L M P+T S + Y P
Sbjct: 134 TTPQIVNLISAIRTISDHYGPDFLLS----MAPETAYVQGGYSAYGSIWGAYLPIIYGVK 189
Query: 432 DKIDLHYKDLRIVPGDLLTSVLNLYKKSVDYAYTQLHEPINKTSWKEFGSVATVNAFNHI 491
DK+ + + N + + DY ++ + G+ +
Sbjct: 190 DKLTYIHVQHYNAGSGIGMDGNNYNQGTADYEVAMADMLLH--GFPVGGNANNIFPALRS 247
Query: 492 DKNAIEFPAGILQEPYFAADRPCFLNYGAIGTVIGHEITHTFDD------EGSQYDKFGN 545
D+ I PA AA +++ + + + I S Y F
Sbjct: 248 DQVMIGLPAAP-----AAAPSGGYISPTEMKKALNYIIKGVPFGGKYKLSNQSGYPAFRG 302
Query: 546 VMNW---WDD 552
+M+W WD
Sbjct: 303 LMSWSINWDA 312
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A
{Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Length = 206
Score = 29.2 bits (66), Expect = 3.8
Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 354 VDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKNALE 413
V ++A++ +A G++Y +F +KE+ L + +++M ++ + D + K A E
Sbjct: 31 VSKIAKQAGVADGTIY-LYF---KNKEDILISL--FKEKMGQFIERME-EDIKEKATAKE 83
Query: 414 K-SKVLKVHIGYPDELLDDDKIDLHYKDLRIVPGDLLTSVLNLYKK 458
K + V+ H D + + +LR +L + + K
Sbjct: 84 KLALVISKHFSLLAG--DHNLAIVTQLELRQSNLELRQKINEILKG 127
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA,
acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus}
PDB: 3ang_C*
Length = 204
Score = 28.9 bits (65), Expect = 4.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 354 VDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNV 400
E+A+ ++ G+ + ++ KE L Q + + + V
Sbjct: 32 ATEIAKAAHVSRGTFF-NYY---PYKEAVLLDY--GSQLLAGLREEV 72
Score = 28.9 bits (65), Expect = 4.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 708 VDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNV 754
E+A+ ++ G+ + ++ KE L Q + + + V
Sbjct: 32 ATEIAKAAHVSRGTFF-NYY---PYKEAVLLDY--GSQLLAGLREEV 72
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 29.7 bits (67), Expect = 5.1
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 554 SKMRYNEKASCIIKQYSNYVIEDIGFRINGIT------TQGENIAD 593
S+ R+ E I S+++I+ +GF+ + + G N+
Sbjct: 331 SEDRFQE----IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 5.1
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 32/78 (41%)
Query: 693 WKESVNSTRIRSQRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQ 752
W+E R+ E D SK E +++++
Sbjct: 90 WREE-QRKRL---------QEL--------------DAASKVMEQEWREKAKKDLE---- 121
Query: 753 NVSWMDPQTKKNALEKSK 770
W Q+++ +EK+K
Sbjct: 122 --EWNQRQSEQ--VEKNK 135
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted
DNA-binding transcriptional regulator TETR/ACRR family;
2.10A {Clostridium acetobutylicum atcc 824}
Length = 203
Score = 28.9 bits (65), Expect = 5.5
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 354 VDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKNALE 413
+ + K ++ G+LY H+F SKE + + + + V + N++E
Sbjct: 34 LAFIINKLGISKGALY--HYFS--SKEECADAA--IENRVAFFSNEVLKES-EEGLNSIE 86
Query: 414 K-SKVLKVHIGYPDELLDDDKIDLH 437
+ K+L I +I+
Sbjct: 87 RLKKILLAGIKITSVNEQVKEINSP 111
Score = 28.9 bits (65), Expect = 5.5
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 708 VDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNNLRQEMDYILQNVSWMDPQTKKNALE 767
+ + K ++ G+LY H+F SKE + + + + V + N++E
Sbjct: 34 LAFIINKLGISKGALY--HYFS--SKEECADAA--IENRVAFFSNEVLKES-EEGLNSIE 86
Query: 768 K-SKVLKVHIGYPDELLDDDKIDLH 791
+ K+L I +I+
Sbjct: 87 RLKKILLAGIKITSVNEQVKEINSP 111
>2fyx_A Transposase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1
PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Length = 143
Score = 28.1 bits (61), Expect = 6.2
Identities = 10/107 (9%), Positives = 20/107 (18%)
Query: 636 VWCTKYRKEAMELLFKNDDHPPAEIRVNGPLSNSYDFARDFQCYSGSKMNPKHKCEVWKE 695
+W TKYR + + +
Sbjct: 28 IWATKYRHQVLVDEVADGLKDILRDIATQNGLELVALEVMPDYVHLLLGATPQHVIPDFV 87
Query: 696 SVNSTRIRSQRCVDEVAEKFSLAVGSLYVRHFFDRTSKENALELVNN 742
+ K G+L+ + T E+ +
Sbjct: 88 KALKGASARRMFSAFPHLKQPHWGGNLWNPSYCVLTVSEHTRAQIQQ 134
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 9.2
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 508 FAADRPCFLNYGAIGTVI-GHEI----THTFDDEGSQYDKFGNVMNWWDDESKMRY 558
A + P + I + +EI + D+ D+ +WD SK+ Y
Sbjct: 166 IAYE-P----FENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYY 216
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 28.3 bits (64), Expect = 10.0
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 374 FDRTSK--ENALELVNNLRQEMDYILQNVSWMDPQTKKNALEKSKVLKVH---IG---YP 425
F+R E A+ + + D ++ D AL + +L + +G
Sbjct: 178 FNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL-TNGTKVGMKPLE 236
Query: 426 DELLDDDKIDLH 437
+E L D L
Sbjct: 237 NESLIGDVSLLR 248
Score = 28.3 bits (64), Expect = 10.0
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 728 FDRTSK--ENALELVNNLRQEMDYILQNVSWMDPQTKKNALEKSKVLKVH---IG---YP 779
F+R E A+ + + D ++ D AL + +L + +G
Sbjct: 178 FNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL-TNGTKVGMKPLE 236
Query: 780 DELLDDDKIDLH 791
+E L D L
Sbjct: 237 NESLIGDVSLLR 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,489,915
Number of extensions: 762996
Number of successful extensions: 1461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1419
Number of HSP's successfully gapped: 36
Length of query: 800
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 699
Effective length of database: 3,881,772
Effective search space: 2713358628
Effective search space used: 2713358628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)