BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9964
(595 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DF46|COQ6_XENTR Ubiquinone biosynthesis monooxygenase COQ6 OS=Xenopus tropicalis
GN=coq6 PE=2 SV=1
Length = 464
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/366 (42%), Positives = 229/366 (62%), Gaps = 15/366 (4%)
Query: 121 FTSQMNILKIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTK 180
F + +IL +++ Y ++ VW SD L+ F+K + + + YIVEND+II+A+TK
Sbjct: 97 FGAWDHILAMRLKPYKRMQ----VWDACSDALITFDK--DALEDMGYIVENDIIIEALTK 150
Query: 181 KLNTL--NIDIVYQKKVAHYELPEQPLNN------VKIKFESGESIECKLLLGTDGARSQ 232
+L + +++++Y+ + Y P P NN V+I+ G+ + KLL+G DG S
Sbjct: 151 QLELMSDHVEVMYRSRALSYSWPP-PYNNGKATPWVEIELADGQRLHTKLLIGADGHNSM 209
Query: 233 VRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWAT 292
VR+A +Q W+Y+ +VAT+ +S + N AWQRF P+G +ALLPLSD SSLVW+T
Sbjct: 210 VRSAAGMQSVQWNYNHAAVVATLHLSEATDNNVAWQRFLPTGPIALLPLSDTCSSLVWST 269
Query: 293 TPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPP 352
+PE+A L+ M ESFVD +NS F +E I A H+ L FF + + + +PP
Sbjct: 270 SPEHASELVSMDEESFVDTVNSAFWSNENHSEFITSAGSLLHSALSFFMPTGSSPRQLPP 329
Query: 353 RVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLS 412
V VE+ SRA+FPLG H+ YI AL+GD+AHR+HPLAGQGVN+GFGD+ACL
Sbjct: 330 SVSRVEQNSRASFPLGLKHATEYIRHRVALIGDAAHRVHPLAGQGVNMGFGDVACLAHHL 389
Query: 413 AESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVN 472
+++ NG +G + L +YE+ RQR NLP+M ++DL+ R+Y + P+ +L LG Q N
Sbjct: 390 SQAAFNGSDLGSTKHLLEYETERQRHNLPLMAAVDLLKRLYNTKQPPIVLLRTLGLQATN 449
Query: 473 AVRPIK 478
A+ P+K
Sbjct: 450 ALTPVK 455
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 501 RYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSL-HFSKSSSY 559
R SS G YDVVISGGGM+GT +ACA+ +P L+ +L++E+G K H + ++
Sbjct: 22 RALSSTGPAVYDVVISGGGMVGTAMACALGSDPHLQHKKVLLLEAGNRKPFDHLPE--NF 79
Query: 560 SNRVSSINSSSKQLFETIGAWDHIESTR 587
SNRVSSI S L + GAWDHI + R
Sbjct: 80 SNRVSSITPGSATLLASFGAWDHILAMR 107
>sp|F1RAX8|COQ6_DANRE Ubiquinone biosynthesis monooxygenase COQ6 OS=Danio rerio GN=coq6
PE=2 SV=1
Length = 484
Score = 296 bits (757), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 149/343 (43%), Positives = 214/343 (62%), Gaps = 8/343 (2%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL--NIDIVYQKKVAHYEL 200
+VW SD L+ F+K N QD ++YIVEND+I+ A+TK+L TL ++ + Y+ KV Y
Sbjct: 134 QVWDACSDALITFDK-ENLQDEMAYIVENDVIVAALTKQLQTLSDHVKVQYRTKVVKYTW 192
Query: 201 PE-----QPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATV 255
P + + V++ +G+++ KLL+G DG S VR + W+YDQ +VA +
Sbjct: 193 PHPYHVSESIPWVQVALANGKTLHTKLLIGADGPNSMVRREAGIPTVKWNYDQSAVVAVL 252
Query: 256 KISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSE 315
+S N AWQRF P+G +A+LPLSD SSLVW+T+ ++A+ LLQM ESFVDA+NS
Sbjct: 253 HLSEPTENNVAWQRFLPTGPIAMLPLSDTESSLVWSTSHQHAEELLQMDEESFVDAINSA 312
Query: 316 FNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRY 375
F +E ++ A L +G+ + +PP V + KSR FPLG GH+ Y
Sbjct: 313 FWSNENHSELVETAGSLFRMALSVLMPDSGSARQLPPSVSGIGPKSRVMFPLGMGHATEY 372
Query: 376 IGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIR 435
I AL+GD+AHR+HPLAGQG NLGFGD++ L Q+ +++ NG IG + L ++E+ R
Sbjct: 373 IRHRVALIGDAAHRVHPLAGQGANLGFGDVSYLTQVLSQAAYNGKDIGAMQHLLEFETER 432
Query: 436 QRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
QR NLP+M +IDLM R+Y S+ P+ +L G Q NAV P+K
Sbjct: 433 QRHNLPMMTAIDLMKRLYSSNTAPMVLLRTFGLQATNAVPPLK 475
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSS 570
+D++ISGGGM+GT +AC++ +P L IL++E+G EK + +YS RVSSI+ S
Sbjct: 51 FDIIISGGGMVGTAMACSLGLDPNLTGKKILLLEAGHEKKMD-KIPETYSTRVSSISPGS 109
Query: 571 KQLFETIGAWDHIESTRTCTVDNMK 595
L +GAWDHI + R + M+
Sbjct: 110 ATLLSGLGAWDHIVNMRCKPYNKMQ 134
>sp|Q68FU7|COQ6_RAT Ubiquinone biosynthesis monooxygenase COQ6 OS=Rattus norvegicus
GN=Coq6 PE=2 SV=1
Length = 476
Score = 285 bits (729), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 206/345 (59%), Gaps = 13/345 (3%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL--NIDIVYQKKVAHYEL 200
+VW S+ L+ F+K + D + YIVEND+I+ A+TK+L + + ++Y+ K Y
Sbjct: 127 QVWDSCSEALIMFDK--DNLDDMGYIVENDVIMHAITKQLEAVADRVKVLYESKAVGYAW 184
Query: 201 P-------EQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVA 253
P P V I G +++ KLL+G DG S VR A +Q W+YDQ +VA
Sbjct: 185 PGPFSLADSSPW--VHITLGDGSTLQTKLLIGADGHNSGVRQAAGIQNVGWNYDQSAVVA 242
Query: 254 TVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALN 313
T+ +S + N AWQRF PSG +ALLPLSD SSLVW+T+ +A L+ M E FVDA+N
Sbjct: 243 TLHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHAHAAELVSMHEEEFVDAIN 302
Query: 314 SEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSV 373
S F + + A+ H+ + + + + +PP V V+ KSRA FPLG GH+
Sbjct: 303 SAFWSDVHHTDFVDSASAMVHHAVALLKPTKVSARQLPPSVAKVDAKSRALFPLGLGHAA 362
Query: 374 RYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYES 433
Y+ P AL+GD+AHR+HPLAGQGVN+GFGDI+ L+ + + NG +G LT YE+
Sbjct: 363 EYVRPRVALIGDAAHRVHPLAGQGVNMGFGDISSLIHYLSTAAFNGKDLGSMSHLTGYET 422
Query: 434 IRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
RQR N ++ + DL+ R+Y +S TP+ +L G Q NAV P+K
Sbjct: 423 DRQRHNTALLAATDLLKRLYSTSTTPLVLLRTWGLQATNAVSPLK 467
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 474 VRPIKSILCDIFMRTSM--EKVTLLVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQ 531
+ P+ +LC + T+ + LV R+ SS YDVV+SGGGM+G+ +ACA+
Sbjct: 5 IGPMAGLLCVRWWSTAQLAARGGPLVACRRWTSSSTDSVYDVVVSGGGMVGSAMACALGH 64
Query: 532 NPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCTV 591
+ D IL++E+GP+K+L S +YSNRVSSI+ S L + GAWDHI + R
Sbjct: 65 DIHFHDKKILLLEAGPKKTLE-KLSETYSNRVSSISLGSTTLLSSFGAWDHICNMRCKAF 123
Query: 592 DNMK 595
M+
Sbjct: 124 RRMQ 127
>sp|Q8R1S0|COQ6_MOUSE Ubiquinone biosynthesis monooxygenase COQ6 OS=Mus musculus GN=Coq6
PE=2 SV=3
Length = 476
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 207/345 (60%), Gaps = 13/345 (3%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL--NIDIVYQKKVAHYEL 200
+VW S+ L+ F++ + D + YIVEND+I+ A+TK+L + + ++Y+ K Y
Sbjct: 127 QVWDSCSEALIMFDR--DNLDDMGYIVENDVIMYALTKQLEAVADRVKVLYESKAVGYSW 184
Query: 201 P-------EQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVA 253
P P V I G +++ KLL+G DG +S VR A +Q +W YDQ +VA
Sbjct: 185 PGAFSMADSSPW--VHITLGDGSTLQTKLLIGADGHKSGVRQAAGIQNVSWKYDQSAVVA 242
Query: 254 TVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALN 313
T+ +S + N AWQRF PSG +ALLPLSD SSLVW+T+ E+A L+ M E FVDA+N
Sbjct: 243 TLHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEEFVDAIN 302
Query: 314 SEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSV 373
S F + + A+ + + + + + +PP + V+ KSRA FPLG GH+
Sbjct: 303 SAFWSDVHHTDFVDSASAMVRHAVALLKPTKVSARQLPPSIAKVDAKSRALFPLGLGHAA 362
Query: 374 RYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYES 433
Y+ P AL+GD+AHRIHPLAGQGVN+GFGDI+ LV + + NG +G LT YE+
Sbjct: 363 EYVRPRVALIGDAAHRIHPLAGQGVNMGFGDISSLVHHLSTAAFNGKDLGSMSHLTGYET 422
Query: 434 IRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
RQR N ++ + DL+ R+Y +S TP+ +L G Q NAV P+K
Sbjct: 423 DRQRHNTALLAATDLLKRLYSTSATPLVLLRTWGLQATNAVSPLK 467
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Query: 496 LVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSK 555
LV + R+ S YDVV+SGGG++G+ +ACA+ + D IL++E+GP+K+L
Sbjct: 29 LVASQRWAGSSADTVYDVVVSGGGLVGSAMACALGHDIHFHDKKILLLEAGPKKALE-KL 87
Query: 556 SSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCTVDNMK 595
S +YSNRVSSI+ S L + GAWDHI + R M+
Sbjct: 88 SETYSNRVSSISPGSTTLLSSFGAWDHICNMRCKAFRRMQ 127
>sp|Q9Y2Z9|COQ6_HUMAN Ubiquinone biosynthesis monooxygenase COQ6 OS=Homo sapiens GN=COQ6
PE=1 SV=2
Length = 468
Score = 280 bits (715), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/343 (41%), Positives = 208/343 (60%), Gaps = 9/343 (2%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN--IDIVYQKKVAHYEL 200
+VW S+ L+ F+K + D + YIVEND+I+ A+TK+L ++ + ++Y+ K Y
Sbjct: 119 QVWDACSEALIMFDK--DNLDDMGYIVENDVIMHALTKQLEAVSDRVTVLYRSKAIRYTW 176
Query: 201 P-EQPLNN----VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATV 255
P P+ + V I G + + KLL+G DG S VR A+ +Q +W+YDQ +VAT+
Sbjct: 177 PCPFPMADSSPWVHITLGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVATL 236
Query: 256 KISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSE 315
+S + N AWQRF PSG +ALLPLSD SSLVW+T+ E+A L+ M E FVDA+NS
Sbjct: 237 HLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNSA 296
Query: 316 FNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRY 375
F A+ + I A + + + + +PP V V+ KSR FPLG GH+ Y
Sbjct: 297 FWSDADHTDFIDTAGAMLQYAVSLLKPTKVSARQLPPSVARVDAKSRVLFPLGLGHAAEY 356
Query: 376 IGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIR 435
+ P AL+GD+AHR+HPLAGQGVN+GFGDI+ L + + NG +G LT YE+ R
Sbjct: 357 VRPRVALIGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETER 416
Query: 436 QRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
QR N ++ + DL+ R+Y +S +P+ +L G Q NAV P+K
Sbjct: 417 QRHNTALLAATDLLKRLYSTSASPLVLLRTWGLQATNAVSPLK 459
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 495 LLVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFS 554
L+ W R+ + YDVV+SGGG++G +ACA+ + D IL++E+GP+K L
Sbjct: 21 LVSWR-RWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLE-K 78
Query: 555 KSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCTVDNMK 595
S +YSNRVSSI+ S L + GAWDHI + R M+
Sbjct: 79 LSETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ 119
>sp|Q2KIL4|COQ6_BOVIN Ubiquinone biosynthesis monooxygenase COQ6 OS=Bos taurus GN=COQ6
PE=2 SV=2
Length = 469
Score = 275 bits (703), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 143/344 (41%), Positives = 206/344 (59%), Gaps = 11/344 (3%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN--IDIVYQKKVAHYEL 200
+VW S+ L+ F+K + D + YIVEND+I+ A+TK+L ++ + ++Y+ K Y
Sbjct: 120 QVWDACSEALIMFDK--DNLDDMGYIVENDVIMHALTKQLEAVSDQVTVLYKSKAVSYTW 177
Query: 201 PEQPLNN------VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVAT 254
P P + V I G +++ KLL+G DG S VR A ++ +W+YDQ +VAT
Sbjct: 178 P-YPFSMADSSPWVHITLGDGRTLQTKLLIGADGHNSGVRQAAGIRNVSWNYDQSAVVAT 236
Query: 255 VKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNS 314
+ +S + N AWQRF PSG +ALLPLSD SSLVW+T+ E+A L+ M E FVDA+NS
Sbjct: 237 LHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMEEEEFVDAINS 296
Query: 315 EFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVR 374
F + I A + + F + + + +PP V V+ KSR FPLG GH+
Sbjct: 297 AFWSDVNHTDFIDSAGSMLQSAVAFLKPTRVSARQLPPSVARVDAKSRVLFPLGLGHAAE 356
Query: 375 YIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESI 434
Y+ P AL+GD+AHR+HPLAGQGVN+GFGDI+ L+ + + NG +G LT YE+
Sbjct: 357 YVRPRLALIGDAAHRVHPLAGQGVNMGFGDISSLLHHLSTAAFNGKDLGSMSHLTSYETD 416
Query: 435 RQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
RQR N ++ + DL+ R+Y + T V +L G Q NAV P+K
Sbjct: 417 RQRHNTALLAATDLLKRLYSTRATLVVLLRTWGLQATNAVSPLK 460
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 501 RYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYS 560
R+ + YDVV+SGGG++G +ACA+ + D IL++E+GP+K L +YS
Sbjct: 27 RWAGASADNVYDVVVSGGGLVGAAMACALGHDIHFCDKKILLLEAGPKKVLE-KLPETYS 85
Query: 561 NRVSSINSSSKQLFETIGAWDHIESTRTCTVDNMK 595
NRVSSI+ S L + GAWDHI + R M+
Sbjct: 86 NRVSSISPGSATLLSSFGAWDHICNMRCRAFRRMQ 120
>sp|O01884|COQ6_CAEEL Probable ubiquinone biosynthesis monooxygenase coq-6
OS=Caenorhabditis elegans GN=coq-6 PE=3 SV=2
Length = 451
Score = 269 bits (687), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 230/392 (58%), Gaps = 25/392 (6%)
Query: 98 AIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQILKYVMIKGTSKVWGHSSDDLLEFNK 157
A +P ++ F+K+ V + +S+ T ++N L V+ S +EF +
Sbjct: 73 ATSPTSIDTFKKLGVWDQINSHR-TKKVNRLF--------------VFDSCSTSEIEFER 117
Query: 158 AHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELPEQPLNNVKIKFESGE 216
Q+ +++I+ENDLI+ ++ +KL N+D+ KV +P N IK E+G+
Sbjct: 118 GQ--QEEVAFIIENDLIVGSLYEKLAEYKNVDVKTGAKVEDCSIPNALENMATIKLENGD 175
Query: 217 SIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSP-PNRTAWQRFTPSGT 275
IE LL+G DG S+VR+A N+ Y+ ++Y+Q G+VA V I T+ N TAWQRFT G
Sbjct: 176 VIETSLLIGADGVNSKVRHASNLDYTTFNYNQHGLVAIVNIETANGKNETAWQRFTTLGP 235
Query: 276 VALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEF----NKPAELNESIQVATK 331
VALLPLSD S L W+T+PE A+ L Q+P + FVD LNS N+ +N++I +
Sbjct: 236 VALLPLSDTVSGLTWSTSPEEAQRLKQLPSDQFVDELNSALFSQNNQIPLVNQTIFALNR 295
Query: 332 FTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIH 391
E F E PP V++V++KSRA+FPLGFG++ YI CAL+GD+AHR+H
Sbjct: 296 MNPFRTETFGRKA--EGTTPPHVITVQDKSRASFPLGFGNAHSYITTRCALIGDAAHRMH 353
Query: 392 PLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYR 451
PLAGQGVNLG+ D+ L ++ ++V G IG L +Y+S Q+ NLPVM+S+DL+ R
Sbjct: 354 PLAGQGVNLGWSDVQILDKVLGDAVREGADIGSITYLREYDSAAQKHNLPVMVSVDLLNR 413
Query: 452 VYRSSLTPVKILGNLGFQLVNAVRPIKSILCD 483
+YR+ + G N++ P+K+ L +
Sbjct: 414 LYRTDAPAIVAARAFGLNAFNSLGPVKNFLMN 445
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSL-HFSKSSSYSNRVSSINSS 569
YD VI GGGM+G +AC++ N + + S+L++++G SL F + ++NRV + + +
Sbjct: 18 YDTVIVGGGMVGNAMACSLGANKSFQSKSVLLLDAGRSPSLASFKPGAPFNNRVVATSPT 77
Query: 570 SKQLFETIGAWDHIESTRTCTVDNM 594
S F+ +G WD I S RT V+ +
Sbjct: 78 SIDTFKKLGVWDQINSHRTKKVNRL 102
>sp|Q9VMQ5|COQ6_DROME Putative ubiquinone biosynthesis monooxygenase COQ6 OS=Drosophila
melanogaster GN=CG7277 PE=2 SV=1
Length = 477
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 219/365 (60%), Gaps = 13/365 (3%)
Query: 130 IQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAV-TKKLNTLNID 188
I+ +Y +K +VW ++D L++F + N+ ++ I+ENDLI+DAV + N++
Sbjct: 120 IESARYKPVK-QMQVWESNTDALIQF-QHDNFASDVACIIENDLILDAVYALAKESPNVE 177
Query: 189 IVYQKKVAHYELP-EQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYD 247
I+ + ++ LP + N+ +++ E G + C LL+G DGA S VR MNV + +YD
Sbjct: 178 ILNKARIQCVRLPRDSNSNHSELQLEDGRNFSCDLLIGADGANSVVRKEMNVDVFSLNYD 237
Query: 248 QKGIVATVKISTSP-PNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGE 306
+ G+VAT+++ N AWQRF P+G VALLPL+D SSLVW+TT E AK L +P
Sbjct: 238 RMGLVATLELGEDACDNSVAWQRFLPNGPVALLPLTDRLSSLVWSTTNEQAKMLQALPPT 297
Query: 307 SFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQV-VPPRVMSVEEKSRAAF 365
FVDALN F + +++A K + F + QV PPRV V +KSRA F
Sbjct: 298 EFVDALNEAFCRQYP---RVELADKAVQALNSLFGHNGSQHQVQYPPRVCGVLDKSRATF 354
Query: 366 PLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHP 425
PLGF H+ Y+ G AL+GD+AHR+HPLAGQGVNLGF D+ LV+ A G+ +G
Sbjct: 355 PLGFLHASSYVCNGAALVGDAAHRVHPLAGQGVNLGFSDVRYLVESLAAGAYAGFKLGDK 414
Query: 426 ESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIF 485
+ L KYE +N+P+ML + ++ +Y + +PV +L +LG QL + P+K ++F
Sbjct: 415 QHLIKYERKCLAKNVPIMLGVHGLHTLYATQFSPVVLLRSLGLQLTQNLPPVK----NLF 470
Query: 486 MRTSM 490
MR +M
Sbjct: 471 MRGAM 475
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINS 568
+ +D++I GGG++GTTLA A+A+N TL D +L++E PE F+ + Y NRVS+IN
Sbjct: 47 EHFDIIIGGGGLVGTTLAAALAKNSTLADKKVLLLEGAPEFR-GFNPTGPYQNRVSAINH 105
Query: 569 SSKQLFETIGAWDHIESTRTCTVDNMK 595
+S +LF++I AW HIES R V M+
Sbjct: 106 NSIELFKSIDAWKHIESARYKPVKQMQ 132
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 231 bits (590), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EIKVTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMGY+DDR+FPDF +I G +TD
Sbjct: 1 MPEIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPTKAI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMGY+DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMGY+DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 228 bits (582), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 99/125 (79%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M +IKVTPLGAGQDVGRSCILVS+GGKNIMLDCGMHMG++DDR+FPDF +I G +T+
Sbjct: 1 MPDIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPY +EM GY GPIYMTHPTKAI PILLEDFRKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 97/125 (77%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 97/125 (77%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 95/125 (76%), Positives = 111/125 (88%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMG+ DDR+FPDF + G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMT PT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 90/122 (73%), Positives = 107/122 (87%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
IKV PLGAGQDVGRSC++V++G KNIM DCGMHMG +D R+FPDF +I+ G T +IDC
Sbjct: 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDC 62
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS 123
+II+HFHLDHCGALP+FTEM GY GPIYMT PTKAI PILLED+RKI+VEKKG++NFFT+
Sbjct: 63 VIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFTA 122
Query: 124 QM 125
QM
Sbjct: 123 QM 124
>sp|Q54EN1|COQ6_DICDI Ubiquinone biosynthesis monooxygenase COQ6 homolog OS=Dictyostelium
discoideum GN=coq6 PE=3 SV=1
Length = 495
Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 196/371 (52%), Gaps = 38/371 (10%)
Query: 143 KVWGHSSDDLLEFNKAH-----NYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKV- 195
+VW S + + F N + YI+EN+++ ++ K+ NI++ Q V
Sbjct: 124 RVWDTSGFEGIHFQDNDIIDDGNNTTAMGYIIENNIVTSSLLSKVKQFENIELFEQLSVK 183
Query: 196 AHYELPEQPLNNVKI----KFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGI 251
+ + E+ + I + + + KL++G DG S ++ + V Y+QK +
Sbjct: 184 SMNDYNEETIRTTSILPSVTLSNDQQLHAKLIIGADGGNSILKKQLQVPSIGRVYNQKAV 243
Query: 252 VATVKISTSPPNR------------TAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKA 299
V T+K+ N T +QRF P+G +ALLPL++ +++++W+T +A+
Sbjct: 244 VCTLKLGIKQDNNNNSSNNNNNNNNTLFQRFLPTGPIALLPLANGYANIIWSTNLMHAQY 303
Query: 300 LLQMPGESFVDALNSEFNK-PAELNESI-QVATKFTHNVLEFFNLS----TGNEQVVPPR 353
LL++ ESF++ + F K P+ N S ++A+ FNL+ +GNE +PP
Sbjct: 304 LLELDDESFLEQVKDSFLKSPSTSNSSFFEIAS-------NLFNLNPKGLSGNEIYLPPI 356
Query: 354 VMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSA 413
V + RA+FPL H+ Y P +GD++H +HP+AGQGVNLG D+ L +
Sbjct: 357 EGLVSK--RASFPLRIDHTFNYTLPRVCFIGDASHLVHPMAGQGVNLGMADVKTLSSIIE 414
Query: 414 ESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNA 473
+SV +GY IG L ++E IR+ ENL ++LSID ++ ++ ++ V L N G L+N
Sbjct: 415 QSVQSGYDIGDAMMLKRFEEIRKPENLKMLLSIDTLFNLFTNNSIFVTGLRNFGMSLLNN 474
Query: 474 VRPIKSILCDI 484
+ P+K+++ +
Sbjct: 475 ISPLKNLIIGV 485
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSN-RVSSINSS 569
YD++I GGG++G+T+AC+I N T K L + +IES +++ S S++ R S N+
Sbjct: 38 YDIIIIGGGLVGSTMACSIGNNNTTKHLKVALIESSKIQTVEQSISNAIPEIRTISFNNQ 97
Query: 570 SKQLFETIGAWDHIESTR 587
+ +LF++I WD I+ST+
Sbjct: 98 TIELFKSINVWDTIKSTK 115
>sp|P53318|COQ6_YEAST Ubiquinone biosynthesis monooxygenase COQ6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ6 PE=1
SV=1
Length = 479
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 17/315 (5%)
Query: 186 NIDIVYQKKVAH--YELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSN 243
+IDI+ KV + + P PL+ + +GE + +LL+G DG S R +
Sbjct: 158 SIDIIDNTKVVNIKHSDPNDPLSWPLVTLSNGEVYKTRLLVGADGFNSPTRRFSQIPSRG 217
Query: 244 WSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQM 303
W Y+ G+VA++K+ P WQRF P+G +A LP+ + ++LVW+++ ++ LL +
Sbjct: 218 WMYNAYGVVASMKLEYPPFKLRGWQRFLPTGPIAHLPMPENNATLVWSSSERLSRLLLSL 277
Query: 304 PGESFVDALNSEFN-KPAELN---ESIQVATKFTHNVLEFFNLSTGN-----------EQ 348
P ESF +N+ F + A++N +++ + T ++E T ++
Sbjct: 278 PPESFTALINAAFVLEDADMNYYYRTLEDGSMDTDKLIEDIKFRTEEIYATLKDESDIDE 337
Query: 349 VVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACL 408
+ PPRV+S+ +K+RA FPL H+ RY AL+GD+AH HPLAGQG+N+G D+ L
Sbjct: 338 IYPPRVVSIIDKTRARFPLKLTHADRYCTDRVALVGDAAHTTHPLAGQGLNMGQTDVHGL 397
Query: 409 VQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGF 468
V +++ G IG SL + + R N ++ D ++++Y ++ PV L G
Sbjct: 398 VYALEKAMERGLDIGSSLSLEPFWAERYPSNNVLLGMADKLFKLYHTNFPPVVALRTFGL 457
Query: 469 QLVNAVRPIKSILCD 483
L N + P+K+++ D
Sbjct: 458 NLTNKIGPVKNMIID 472
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 484 IFMRTSMEKVTLLVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMI 543
+F M +LV S K DV+I GGG G TLA +I +P LKDL ++
Sbjct: 1 MFFSKVMLTRRILVRGLATAKSSAPKLTDVLIVGGGPAGLTLAASIKNSPQLKDLKTTLV 60
Query: 544 ESGPEK----SLHFSKSSSYSNRVSSI----------NSSSKQLFETIGAWDHIESTRTC 589
+ K + S ++NR+ S+ N+ + + + I ++D + T C
Sbjct: 61 DMVDLKDKLSDFYNSPPDYFTNRIVSVTPRSIHFLENNAGATLMHDRIQSYDGLYVTDGC 120
Query: 590 T 590
+
Sbjct: 121 S 121
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 93/120 (77%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
I LGAGQ++G+SC++V++ GK IM DCGMHMG D ++P+F I+ G + I C
Sbjct: 3 IDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISC 62
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS 123
+II+HFH+DH GALPYFTE+ GY GPIYM++PTKA++P++LED+R++ V+++G+ FT+
Sbjct: 63 IIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTT 122
>sp|Q9Y7Z9|COQ6_SCHPO Probable ubiquinone biosynthesis monooxygenase coq6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=coq6 PE=3 SV=2
Length = 479
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 138/279 (49%), Gaps = 25/279 (8%)
Query: 218 IECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVA 277
+ KLL+G DG S VR N+ W+Y +V T+KI A+QRF P+G +A
Sbjct: 203 LTTKLLIGADGRNSIVRKYANISMPGWNYLTHAVVGTLKIDPLKGPAVAFQRFLPTGPLA 262
Query: 278 LLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNS---------------EFNKPAEL 322
LPL D ++ VW+T P A LL++P E+FV LN+ +F++P+++
Sbjct: 263 YLPLPDNNATFVWSTRPHIASKLLRLPEETFVKFLNASFRLDYPDLSYLYQMDFSEPSKV 322
Query: 323 NESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCAL 382
NE + + N N Q VPP + + SRAAFPL H Y+ G AL
Sbjct: 323 NEQLDWRLQVKRN---------SNMQ-VPPVITEIVSGSRAAFPLRLAHVDEYVKEGIAL 372
Query: 383 LGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPV 442
GD+AH HPLAGQG+N G D+ L+ + ++ +G IG SL Y R +N
Sbjct: 373 CGDAAHNTHPLAGQGLNTGIQDVESLISALSFAIKHGQDIGSVFSLQPYFRDRYFKNHVY 432
Query: 443 MLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
+ +D +++Y V + LG L + +K+ +
Sbjct: 433 LGVVDKFHKLYAMENPVVTSVRTLGLSLFDRSASLKNFI 471
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 494 TLLVWNARYYSS-LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH 552
TL ++ ++ S + +Q+DVVI G G +G LA + NP + L + +++ L
Sbjct: 20 TLGIYTRKFASQKILQRQFDVVIVGSGPVGLALAAGLQSNPVTQSLKVGLLDIQDTMKLK 79
Query: 553 FSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587
K +YSNR SS+ + ++ F+ IGAWD R
Sbjct: 80 DWKFETYSNRCSSLTNHTRMFFDKIGAWDFARKDR 114
>sp|P75728|UBIF_ECOLI 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
OS=Escherichia coli (strain K12) GN=ubiF PE=1 SV=1
Length = 391
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 150/319 (47%), Gaps = 47/319 (14%)
Query: 155 FNKAHNYQDRISYIVENDLIIDAVTKKLN-----TLNIDIVYQKKVAHYELPEQPLNNVK 209
F+ A + Y+VEN ++ A+ + L TL + H +L E
Sbjct: 95 FDAAELKLPLLGYMVENTVLQQALWQALEAHPKVTLRVPGSLIALHRHDDLQE------- 147
Query: 210 IKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQR 269
++ + GE I KL++G DGA SQVR + W Y Q ++ +V+ P + T WQ+
Sbjct: 148 LELKGGEVIRAKLVIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDST-WQQ 206
Query: 270 FTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVA 329
FTP G A LPL D ++SLVW +P + L M A+L I A
Sbjct: 207 FTPDGPRAFLPLFDNWASLVWYDSPARIRQLQNM--------------NMAQLQAEI--A 250
Query: 330 TKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHR 389
F P R+ V + AFPL H+++Y+ PG AL+GD+AH
Sbjct: 251 KHF------------------PSRLGYVTPLAAGAFPLTRRHALQYVQPGLALVGDAAHT 292
Query: 390 IHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLM 449
IHPLAGQGVNLG+ D+ L+ + + S G L +Y+ R +N + +DL
Sbjct: 293 IHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRYQMRRMADNFIMQSGMDLF 352
Query: 450 YRVYRSSLTPVKILGNLGF 468
Y + ++L P++ + NLG
Sbjct: 353 YAGFSNNLPPLRFMRNLGL 371
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSK 571
++ I GGGM+G LA +AQ+ ++ +IE + F S R+S+I+++S
Sbjct: 7 EIAIVGGGMVGGALALGLAQH----GFAVTVIEHA--EPAPFVADSQPDVRISAISAASV 60
Query: 572 QLFETIGAWDHIESTR 587
L + +G WD +++ R
Sbjct: 61 SLLKGLGVWDAVQAMR 76
>sp|P72835|Y1300_SYNY3 Uncharacterized protein slr1300 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1300 PE=3 SV=1
Length = 414
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 125/276 (45%), Gaps = 35/276 (12%)
Query: 206 NNVKIKFESGE-SIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNR 264
V ++ E E +++ KLL+ DGARS R+ +Q W Y Q + T++ +P N
Sbjct: 149 KQVTLQQEGREITLQTKLLVAADGARSHTRSLAGIQTKGWKYWQSCVAFTIQ-HQAPDNT 207
Query: 265 TAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNE 324
TA++RF +G + +LPL + + +VW A L+ +P F+ L
Sbjct: 208 TAFERFCDTGPMGILPLPGDRAQIVWTMPHHKAHTLVNLPEADFITELRQRIG------- 260
Query: 325 SIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLG 384
+ L F+L +R FP+ S Y+ P AL+G
Sbjct: 261 ----------DRLGEFHLIN----------------ARRLFPVQLMQSDCYVQPRLALVG 294
Query: 385 DSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVML 444
D+AH HP+ GQG+NLG D A L Q+ A + S G G L +YE R+ EN ++
Sbjct: 295 DAAHCCHPVGGQGLNLGIRDGAALAQVIATAHSQGEDWGSLAVLKRYEHWRKPENWLILG 354
Query: 445 SIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSI 480
DL+ R + S P L G +++ V P K +
Sbjct: 355 FTDLLDRFFSSHWLPAIALRRFGLEVLRLVPPAKKL 390
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 504 SSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRV 563
+S+ Q+DV I+GGG++G LA + L I +IE+ P K +K +Y
Sbjct: 6 ASITDNQFDVAIAGGGVVGLVLAAGLRHT----GLKIAIIEALP-KEQALTKPQAY---- 56
Query: 564 SSINSSSKQLFETIGAWDHIEST 586
+I+ S ++ +G W++I+ +
Sbjct: 57 -AISLLSGKILAGLGVWENIKDS 78
>sp|P25535|VISC_ECOLI Protein VisC OS=Escherichia coli (strain K12) GN=visC PE=3 SV=2
Length = 400
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 157/342 (45%), Gaps = 41/342 (11%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLN-TLNIDIVYQKKVAHYELP 201
+VW S + F+ + +IVEN +I A+ K + + +I ++ ++
Sbjct: 82 EVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWNKAHQSSDITLLAPAELQQVAWG 141
Query: 202 EQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSP 261
E N + + G + +L++G DGA S +RN ++ + W Y +VAT++ + P
Sbjct: 142 E---NETFLTLKDGSMLTARLVIGADGANSWLRNKADIPLTFWDYQHHALVATIR-TEEP 197
Query: 262 PNRTAWQRFTPSGTVALLPLSD-EFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPA 320
+ A Q F G +A LPLSD S+VW+ +PE A+ + Q + F ALN F+
Sbjct: 198 HDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFD--- 254
Query: 321 ELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGC 380
N L + E +R FPL ++ ++
Sbjct: 255 --------------NRLGLCKV----------------ESARQVFPLTGRYARQFASHRL 284
Query: 381 ALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENL 440
AL+GD+AH IHPLAGQGVNLGF D A L+ G IG L +YE R + +
Sbjct: 285 ALVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRRYERSR-KHSA 343
Query: 441 PVMLSIDLMYRVYRSSLTPV-KILGNLGFQLVNAVRPIKSIL 481
+ML+ +R S P K+L ++G +L + + +K L
Sbjct: 344 ALMLAGMQGFRDLFSGTNPAKKLLRDIGLKLADTLPGVKPQL 385
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSK 571
DV I GGGM+G +AC + + L + ++E ++ L + ++ RVS+IN++S+
Sbjct: 5 DVAIVGGGMVGLAVACGLQGS----GLRVAVLEQRVQEPL--AANAPPQLRVSAINAASE 58
Query: 572 QLFETIGAWDHIESTRTCTVDNMK 595
+L +G W I S R M+
Sbjct: 59 KLLTRLGVWQDILSRRASCYHGME 82
>sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I
OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1
Length = 693
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 11/156 (7%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ VTPLGAG +VGRSC+ +S GKNI+ DCG+H Y P F I P ID
Sbjct: 21 QLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPSS-----ID 75
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+I+HFH+DH +LPYF E + G ++MTH TKAI +LL D+ K+S D F
Sbjct: 76 VLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 135
Query: 123 SQMN--ILKIQILKY---VMIKGTSKVWGHSSDDLL 153
+N + KI+++ + V + G K W +++ +L
Sbjct: 136 QDINKSMDKIEVIDFHQTVEVNGI-KFWCYTAGHVL 170
>sp|P25534|UBIH_ECOLI 2-octaprenyl-6-methoxyphenol hydroxylase OS=Escherichia coli
(strain K12) GN=ubiH PE=1 SV=2
Length = 392
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 123/276 (44%), Gaps = 34/276 (12%)
Query: 206 NNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRT 265
++V++ ESGE++ ++L+ DG S + A V + Y+Q ++A V S + R
Sbjct: 141 SHVEVTLESGETLTGRVLVAADGTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGR- 199
Query: 266 AWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNES 325
A++RFT G +A+LP+SD SLVW E + +L E F L S F
Sbjct: 200 AFERFTQHGPLAMLPMSDGRCSLVWCHPLERREEVLSWSDEKFCRELQSAFGWR------ 253
Query: 326 IQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGD 385
K TH R+A+PL H+ R I L+G+
Sbjct: 254 ---LGKITH------------------------AGKRSAYPLALTHAARSITHRTVLVGN 286
Query: 386 SAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLS 445
+A +HP+AGQG NLG D+ L + ++ G +G L +Y+ RQ + +
Sbjct: 287 AAQTLHPIAGQGFNLGMRDVMSLAETLTQAQERGEDMGDYGVLCRYQQRRQSDREATIGV 346
Query: 446 IDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
D + ++ + P+ + N+G + P + +L
Sbjct: 347 TDSLVHLFANRWAPLVVGRNIGLMTMELFTPARDVL 382
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIE-SGPEKSLHFSKSSSYSNRVSSINSSSK 571
V+I GGGM G TLA AI++ + L + +IE + PE H + R ++ + +
Sbjct: 3 VIIVGGGMAGATLALAISR-LSHGALPVHLIEATAPESHAH----PGFDGRAIALAAGTC 57
Query: 572 QLFETIGAWDHIESTRT 588
Q IG W + T
Sbjct: 58 QQLARIGVWQSLADCAT 74
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 125 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 160
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 125 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 160
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 125 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 160
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
+++TP+G+G +VGRSC+L+ GK +M DCG+H Y P F I P ID
Sbjct: 36 LEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIP---DIDL 92
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFF 121
L++SHFHLDH A+PYF + G ++MTHPTKAI +LL D+ K+S + D F
Sbjct: 93 LLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLF 150
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFP---DFKFIAPQGPVT 58
++ + LG G +VGRSC ++ GK IMLD G+H Y P DF
Sbjct: 8 NQFRFFSLGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYDDFDL-------- 59
Query: 59 DMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
++D L+ISHFHLDH +LPY + + G ++MTHPTKAI LL DF +++
Sbjct: 60 SIVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVT 112
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISH 68
LGAG +VGRSC ++ GK +MLD G+H Y P F +D L+ISH
Sbjct: 24 LGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFD-----LSTVDVLLISH 78
Query: 69 FHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
FHLDH +LPY + + G ++MTHPTKA+ LL D+ K+S
Sbjct: 79 FHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVS 121
>sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=YSH1 PE=3 SV=2
Length = 827
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISH 68
LG G++VGRSC ++S GK IMLD G+H + P + ID L+ISH
Sbjct: 42 LGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFD-----LSTIDILLISH 96
Query: 69 FHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFF-----TS 123
FHLDH +LPY + + G ++MTHPTK I LL DF +++ + D + + T+
Sbjct: 97 FHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEADLTA 156
Query: 124 QMNILKIQILKY 135
N KI+ + Y
Sbjct: 157 SFN--KIETIDY 166
>sp|Q58633|Y1236_METJA Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1236 PE=4 SV=1
Length = 634
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 78/121 (64%), Gaps = 6/121 (4%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
I+V+ LG ++VGRSC+ V +++DCG+++ +D+ FP F AP+ + D+ D
Sbjct: 180 IRVSFLGGAREVGRSCLYVQTPDTRVLIDCGINVAC-EDKAFPHFD--APEFSIEDL-DA 235
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS 123
+I++H HLDHCG +P +GY GP+Y T PT+ + +L +D+ +I+ +K+G +TS
Sbjct: 236 VIVTHAHLDHCGFIPGLFR-YGYDGPVYCTRPTRDLMTLLQKDYLEIA-KKEGKEVPYTS 293
Query: 124 Q 124
+
Sbjct: 294 K 294
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 5 KVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCL 64
K LG +VGRSC ++ GK +MLD G+H Y P + +D L
Sbjct: 10 KFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFD-----LSKVDIL 64
Query: 65 IISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
+ISHFHLDH +LPY + + G ++MTHPTKAI LL DF +++
Sbjct: 65 LISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVT 111
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 16/130 (12%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM-- 60
++ + LGAGQ+VGRSC ++ GK I+ D G+H P F IA + ++
Sbjct: 23 QLTIEMLGAGQEVGRSCCVLKYRGKTIVCDTGVH---------PAFTGIAALPFIDELDW 73
Query: 61 --IDCLIISHFHLDHCGALPYFTEMFGYA---GPIYMTHPTKAIAPILLEDFRKISVEKK 115
+D ++I+HFHLDH AL Y E + G +YMTHPTKA+ L+ DF +IS
Sbjct: 74 STVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGN 133
Query: 116 GDSNFFTSQM 125
D+ F ++M
Sbjct: 134 DDNLFDENEM 143
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
++ LG +VGRSC ++ GK +MLD G+H + P + ID
Sbjct: 14 LRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFD-----LSTIDL 68
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
L+ISHFHLDH +LPY + + G ++MTHPTKAI LL DF K++
Sbjct: 69 LLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVT 116
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDF-KFIAPQGPVTDMIDCLIIS 67
LG +VGRSC ++ GK +MLD G+H + P + +F Q ++ L+IS
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLSQ------VEVLLIS 69
Query: 68 HFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
HFHLDH +LPY + + G ++MTHPTKAI LL DF K++
Sbjct: 70 HFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVT 113
>sp|Q4IPN9|YSH1_GIBZE Endoribonuclease YSH1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=YSH1 PE=3 SV=2
Length = 833
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFP---DFKFIAPQGPVTDMIDCLI 65
LG G +VGRSC ++ GK +MLD G H Y P DF +D L+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDL--------STVDVLL 81
Query: 66 ISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKI 110
ISHFH+DH +LPY + G ++MTHPTKAI L++D ++
Sbjct: 82 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRV 126
>sp|Q4WRC2|YSH1_ASPFU Endoribonuclease ysh1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=ysh1 PE=3 SV=1
Length = 872
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISH 68
LG G +VGRSC ++ GK +MLD GMH P F +D L+ISH
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFD-----LSTVDILLISH 84
Query: 69 FHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
FH+DH ALPY + G ++MTH TKAI L++D ++S
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVS 127
>sp|Q59P50|YSH1_CANAL Endoribonuclease YSH1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=YSH1 PE=3 SV=1
Length = 870
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISH 68
LG +VGRSC ++ K IMLD GMH FP F +D L+ISH
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYD-----ISKVDILLISH 159
Query: 69 FHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
FH+DH +LPY + + G ++MTH TKAI L++DF +++
Sbjct: 160 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVT 202
>sp|Q5BEP0|YSH1_EMENI Endoribonuclease ysh1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ysh1 PE=3 SV=1
Length = 884
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISH 68
LG G +VGRSC ++ GK +MLD GMH P F +D L+ISH
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFD-----LSTVDILLISH 83
Query: 69 FHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
FH+DH ALPY + G ++MTH TKAI L++D +++
Sbjct: 84 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVN 126
>sp|Q8WZS6|YSH1_NEUCR Endoribonuclease ysh-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ysh-1
PE=3 SV=1
Length = 850
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFP---DFKFIAPQGPVTDMIDCLI 65
LG G +VGRSC ++ GK +MLD G H Y P DF +D L+
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDL--------STVDVLL 80
Query: 66 ISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKI 110
ISHFH+DH +LPY + G ++MTH TKAI L++D ++
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRV 125
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
+ K LG +VGRSC ++ K IMLD G+H G P + +D
Sbjct: 13 DFKFFGLGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLQGLSSLPFYDEYD-----LSKVD 67
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
L++SHFHLDH +LPY + + G ++MTH TKAI LL DF K++
Sbjct: 68 ILLVSHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKVT 116
>sp|P0CM88|YSH1_CRYNJ Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=YSH1 PE=3
SV=1
Length = 773
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
+ +T LGAGQ+VGRSC ++ GK I+ D G+H P FI T +D
Sbjct: 29 LTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALP---FIDELDWST--VDA 83
Query: 64 LIISHFHLDHCGALPYFTEMFGYA---GPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
++I+HFH+DH ALPY E + G +YMTH TKAI + + D +++ + S
Sbjct: 84 MLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNPDTSGR 143
Query: 121 FTSQMNI 127
+ ++
Sbjct: 144 LYDEADV 150
>sp|P0CM89|YSH1_CRYNB Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=YSH1 PE=3 SV=1
Length = 773
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
+ +T LGAGQ+VGRSC ++ GK I+ D G+H P FI T +D
Sbjct: 29 LTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALP---FIDELDWST--VDA 83
Query: 64 LIISHFHLDHCGALPYFTEMFGYA---GPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
++I+HFH+DH ALPY E + G +YMTH TKAI + + D +++ + S
Sbjct: 84 MLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNPDTSGR 143
Query: 121 FTSQMNI 127
+ ++
Sbjct: 144 LYDEADV 150
>sp|Q5SLP1|RNSE_THET8 Ribonuclease TTHA0252 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=TTHA0252 PE=1 SV=1
Length = 431
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
+++ P GA ++V S L+ GG+ ++LDCGM G + R F F + +D
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDA 54
Query: 64 LIISHFHLDHCGALP-YFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
++++H HLDH G LP F E GY GP+Y T T + I+LED K+ D FF
Sbjct: 55 VLLTHAHLDHVGRLPKLFRE--GYRGPVYATRATVLLMEIVLEDALKVM-----DEPFFG 107
Query: 123 SQ 124
+
Sbjct: 108 PE 109
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMI 61
+ ++VTPL G C L+++ G +LDCG D + P V I
Sbjct: 3 TSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGW-------TDLCDPSHLQPLAKVAPTI 55
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFF 121
D +++SH H GALPY + G + P+Y T P + + L D+ IS + D + F
Sbjct: 56 DAVLLSHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYF-ISRRQVSDFDLF 114
Query: 122 T 122
T
Sbjct: 115 T 115
>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2
OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1
Length = 784
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
IK T L +D C L+ + I+LDCG+ DF + P V ID
Sbjct: 5 IKFTALSGAKDESPPCYLLEIDDFCILLDCGLSYNL-------DFSLLEPLEKVAKKIDA 57
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDF 107
+++SH H G LPY +G G IY T P + + L D
Sbjct: 58 VLLSHSDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDL 101
>sp|Q60355|Y047_METJA Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0047 PE=3 SV=2
Length = 428
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 10 GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHF 69
GA +VGRSCI + I+LDCG+ +G + ++ + D +D + ISH
Sbjct: 7 GAALEVGRSCIEIKTDKSKILLDCGVKLG-------KEIEYPILDNSIRD-VDKVFISHA 58
Query: 70 HLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
HLDH GALP P+ T +K + +LL+D KI+
Sbjct: 59 HLDHSGALPVLFHR-KMDVPVITTELSKKLIKVLLKDMVKIA 99
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 10 GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHF 69
G Q +G SC+ V ++LDCGM + K D +D +I+SH
Sbjct: 8 GGCQQIGMSCVEVETQKGRVLLDCGMSPDTGEIPKVDD-----------KAVDAVIVSHA 56
Query: 70 HLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLED 106
HLDHCGA+P++ IY THPT + I D
Sbjct: 57 HLDHCGAIPFYK-----FKKIYCTHPTADLMFITWRD 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,640,251
Number of Sequences: 539616
Number of extensions: 9184891
Number of successful extensions: 25203
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 24933
Number of HSP's gapped (non-prelim): 274
length of query: 595
length of database: 191,569,459
effective HSP length: 123
effective length of query: 472
effective length of database: 125,196,691
effective search space: 59092838152
effective search space used: 59092838152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)