Query psy9964
Match_columns 595
No_of_seqs 635 out of 4623
Neff 10.0
Searched_HMMs 46136
Date Sat Aug 17 00:09:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01989 COQ6 Ubiquinone bios 100.0 1.8E-41 4E-46 353.1 35.2 342 137-482 83-437 (437)
2 PRK08013 oxidoreductase; Provi 100.0 2.2E-40 4.9E-45 341.7 35.7 315 137-488 76-392 (400)
3 PRK05714 2-octaprenyl-3-methyl 100.0 4.5E-40 9.7E-45 341.1 35.5 316 136-488 76-395 (405)
4 PRK06617 2-octaprenyl-6-methox 100.0 4.6E-40 9.9E-45 336.3 33.9 306 132-488 66-373 (374)
5 PRK08850 2-octaprenyl-6-methox 100.0 8.5E-40 1.8E-44 338.5 34.9 316 136-488 75-392 (405)
6 PRK08773 2-octaprenyl-3-methyl 100.0 5.6E-39 1.2E-43 331.4 34.4 314 137-487 78-391 (392)
7 PRK08849 2-octaprenyl-3-methyl 100.0 8E-39 1.7E-43 328.6 34.7 306 138-487 77-383 (384)
8 COG0654 UbiH 2-polyprenyl-6-me 100.0 2.7E-38 5.8E-43 324.3 34.2 320 130-487 62-384 (387)
9 PRK08020 ubiF 2-octaprenyl-3-m 100.0 2.6E-37 5.6E-42 319.2 35.5 309 140-487 81-390 (391)
10 PRK06996 hypothetical protein; 100.0 4E-37 8.7E-42 317.3 34.8 306 138-486 81-393 (398)
11 PRK07364 2-octaprenyl-6-methox 100.0 5.1E-37 1.1E-41 319.8 34.9 326 127-489 76-405 (415)
12 PRK07333 2-octaprenyl-6-methox 100.0 7.5E-37 1.6E-41 317.4 35.8 322 131-489 65-391 (403)
13 PRK07494 2-octaprenyl-6-methox 100.0 1.1E-36 2.3E-41 314.3 33.6 314 133-487 68-386 (388)
14 KOG3855|consensus 100.0 1.3E-37 2.7E-42 295.3 21.9 351 134-487 113-479 (481)
15 PRK09126 hypothetical protein; 100.0 7.7E-36 1.7E-40 308.5 34.1 313 139-488 77-390 (392)
16 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.1E-35 2.3E-40 307.2 35.1 321 130-487 63-385 (385)
17 TIGR01984 UbiH 2-polyprenyl-6- 100.0 3.2E-35 6.9E-40 302.9 34.4 312 135-486 68-381 (382)
18 PRK05732 2-octaprenyl-6-methox 100.0 1.6E-34 3.5E-39 299.2 35.5 289 163-488 103-392 (395)
19 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.2E-34 2.7E-39 309.7 28.4 323 129-493 68-398 (538)
20 PRK06185 hypothetical protein; 100.0 1E-34 2.2E-39 301.5 26.1 309 139-485 75-391 (407)
21 PRK07588 hypothetical protein; 100.0 2.1E-34 4.5E-39 297.3 27.2 321 129-488 58-383 (391)
22 PRK07608 ubiquinone biosynthes 100.0 2.6E-33 5.6E-38 289.3 35.2 309 139-487 79-388 (388)
23 PRK06834 hypothetical protein; 100.0 1.5E-33 3.2E-38 295.5 28.0 282 164-492 92-374 (488)
24 PRK08244 hypothetical protein; 100.0 8.2E-33 1.8E-37 293.2 29.7 288 163-493 91-382 (493)
25 PRK08243 4-hydroxybenzoate 3-m 100.0 1.5E-31 3.3E-36 275.5 28.5 318 128-488 61-388 (392)
26 PRK06753 hypothetical protein; 100.0 6.1E-32 1.3E-36 277.5 25.3 296 130-471 59-356 (373)
27 PRK07045 putative monooxygenas 100.0 1.9E-31 4.1E-36 274.9 28.8 271 166-469 100-374 (388)
28 PRK05868 hypothetical protein; 100.0 2.8E-31 6E-36 270.5 24.0 300 130-469 60-368 (372)
29 PRK08132 FAD-dependent oxidore 100.0 2.8E-30 6.1E-35 276.9 31.9 275 166-483 119-401 (547)
30 PRK08294 phenol 2-monooxygenas 100.0 2E-30 4.4E-35 279.0 29.0 295 127-457 89-416 (634)
31 PRK07190 hypothetical protein; 100.0 8.6E-30 1.9E-34 266.7 30.9 275 165-493 102-378 (487)
32 PRK06475 salicylate hydroxylas 100.0 4E-30 8.6E-35 265.7 27.5 262 167-471 102-377 (400)
33 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 1.4E-29 3.1E-34 259.8 27.8 316 128-486 61-386 (390)
34 PRK06184 hypothetical protein; 100.0 1.3E-29 2.8E-34 269.2 27.7 246 164-454 101-353 (502)
35 PRK06847 hypothetical protein; 100.0 9.1E-29 2E-33 254.3 28.5 302 131-471 64-372 (375)
36 PTZ00367 squalene epoxidase; P 100.0 4.9E-29 1.1E-33 262.5 26.0 320 129-487 92-450 (567)
37 PLN02985 squalene monooxygenas 100.0 7.2E-29 1.6E-33 260.5 25.0 316 138-487 111-436 (514)
38 PRK08163 salicylate hydroxylas 100.0 1.2E-28 2.6E-33 255.2 26.4 297 133-470 66-372 (396)
39 PRK07538 hypothetical protein; 100.0 2.1E-28 4.5E-33 254.0 25.8 283 130-448 59-361 (413)
40 PRK06126 hypothetical protein; 100.0 3.6E-28 7.9E-33 261.0 28.5 246 165-454 119-376 (545)
41 PRK07236 hypothetical protein; 100.0 3.6E-28 7.7E-33 250.1 23.4 249 168-455 96-377 (386)
42 TIGR03219 salicylate_mono sali 100.0 2.2E-28 4.7E-33 254.1 21.9 258 167-460 100-380 (414)
43 PF01494 FAD_binding_3: FAD bi 100.0 1.3E-28 2.9E-33 251.6 14.9 246 162-445 101-355 (356)
44 PLN02927 antheraxanthin epoxid 99.9 1.5E-26 3.2E-31 244.5 22.0 255 164-453 186-446 (668)
45 KOG2614|consensus 99.9 2.2E-25 4.8E-30 214.4 16.1 280 127-439 58-361 (420)
46 PLN00093 geranylgeranyl diphos 99.9 7.2E-22 1.6E-26 204.5 28.0 271 141-458 103-389 (450)
47 TIGR02023 BchP-ChlP geranylger 99.9 7.9E-21 1.7E-25 195.5 30.4 238 167-457 87-339 (388)
48 TIGR02028 ChlP geranylgeranyl 99.9 1.2E-20 2.6E-25 193.9 29.0 248 165-457 86-349 (398)
49 PRK08255 salicylyl-CoA 5-hydro 99.9 8.7E-22 1.9E-26 217.4 20.2 240 167-456 92-342 (765)
50 TIGR02032 GG-red-SF geranylger 99.9 1.9E-20 4.1E-25 186.1 21.0 208 163-412 82-295 (295)
51 PRK11445 putative oxidoreducta 99.9 5.1E-20 1.1E-24 186.5 21.1 218 166-438 93-316 (351)
52 PRK10015 oxidoreductase; Provi 99.8 2.5E-18 5.4E-23 178.1 24.9 279 141-456 76-374 (429)
53 PF08491 SE: Squalene epoxidas 99.8 6.2E-19 1.3E-23 164.2 17.6 238 220-488 2-240 (276)
54 KOG1136|consensus 99.8 5.6E-19 1.2E-23 162.6 10.3 125 1-125 1-125 (501)
55 COG0644 FixC Dehydrogenases (f 99.8 4E-17 8.7E-22 168.0 23.5 246 164-452 87-338 (396)
56 PRK10157 putative oxidoreducta 99.8 1.8E-16 3.9E-21 164.5 27.7 255 163-455 99-372 (428)
57 TIGR01790 carotene-cycl lycope 99.7 6.3E-16 1.4E-20 159.7 26.4 228 167-441 80-321 (388)
58 KOG1298|consensus 99.7 1.8E-16 4E-21 150.1 15.2 303 140-475 115-424 (509)
59 PF04820 Trp_halogenase: Trypt 99.7 2.3E-15 4.9E-20 156.4 20.1 246 162-461 144-394 (454)
60 PLN02697 lycopene epsilon cycl 99.6 5E-13 1.1E-17 140.0 26.2 234 168-446 188-447 (529)
61 COG1782 Predicted metal-depend 99.5 3.5E-14 7.5E-19 138.7 11.4 114 4-121 181-294 (637)
62 TIGR01789 lycopene_cycl lycope 99.5 3E-12 6.6E-17 130.0 22.9 225 167-449 84-317 (370)
63 PLN02463 lycopene beta cyclase 99.4 3.1E-11 6.7E-16 124.8 24.5 207 168-420 110-336 (447)
64 TIGR03675 arCOG00543 arCOG0054 99.4 2.4E-13 5.3E-18 144.9 9.1 104 3-110 174-277 (630)
65 COG0595 mRNA degradation ribon 99.4 4.8E-13 1E-17 138.4 8.2 102 2-107 7-112 (555)
66 TIGR00649 MG423 conserved hypo 99.3 2.1E-12 4.5E-17 133.8 9.2 98 4-105 1-102 (422)
67 PRK00055 ribonuclease Z; Revie 99.3 2.5E-12 5.4E-17 125.9 6.2 90 4-103 2-101 (270)
68 KOG3855|consensus 99.2 1.1E-11 2.4E-16 119.4 6.2 87 508-594 34-121 (481)
69 PRK08850 2-octaprenyl-6-methox 99.2 3.3E-11 7.1E-16 125.1 7.2 80 508-594 2-81 (405)
70 PRK08013 oxidoreductase; Provi 99.2 3.7E-11 8E-16 124.4 7.3 81 508-594 1-81 (400)
71 PRK08849 2-octaprenyl-3-methyl 99.2 3.8E-11 8.2E-16 123.6 7.2 79 509-593 2-80 (384)
72 TIGR02651 RNase_Z ribonuclease 99.2 3E-11 6.5E-16 119.9 5.4 91 5-105 1-101 (299)
73 COG1237 Metal-dependent hydrol 99.1 4E-11 8.7E-16 109.4 5.2 75 17-98 22-96 (259)
74 PRK07494 2-octaprenyl-6-methox 99.1 6.4E-11 1.4E-15 122.3 6.9 75 506-594 3-77 (388)
75 PRK06617 2-octaprenyl-6-methox 99.1 5.9E-11 1.3E-15 121.6 6.5 75 511-594 2-76 (374)
76 PRK05714 2-octaprenyl-3-methyl 99.1 8.7E-11 1.9E-15 122.0 7.2 80 510-593 2-81 (405)
77 PF05834 Lycopene_cycl: Lycope 99.1 4.2E-08 9E-13 100.3 26.0 201 167-414 82-290 (374)
78 TIGR01989 COQ6 Ubiquinone bios 99.1 1E-10 2.2E-15 122.3 7.0 84 511-594 1-88 (437)
79 TIGR02649 true_RNase_BN ribonu 99.1 7.8E-11 1.7E-15 116.7 5.7 89 6-104 1-103 (303)
80 COG1234 ElaC Metal-dependent h 99.1 1.1E-10 2.3E-15 113.7 6.5 89 4-102 2-100 (292)
81 PRK08773 2-octaprenyl-3-methyl 99.1 1.8E-10 4E-15 119.0 7.3 79 508-593 4-82 (392)
82 PRK06185 hypothetical protein; 99.1 1.4E-10 3.1E-15 120.6 6.5 75 508-594 4-78 (407)
83 PRK08020 ubiF 2-octaprenyl-3-m 99.1 2E-10 4.3E-15 118.9 7.4 79 508-592 3-81 (391)
84 COG0654 UbiH 2-polyprenyl-6-me 99.1 1.6E-10 3.4E-15 119.0 6.4 73 510-593 2-74 (387)
85 PRK02113 putative hydrolase; P 99.0 3E-10 6.5E-15 109.6 6.8 85 4-100 1-107 (252)
86 PRK05184 pyrroloquinoline quin 99.0 2.4E-10 5.1E-15 112.3 5.7 86 4-101 1-119 (302)
87 COG1236 YSH1 Predicted exonucl 99.0 9.9E-10 2.2E-14 112.7 9.7 99 4-111 1-99 (427)
88 PRK06184 hypothetical protein; 99.0 3.5E-10 7.5E-15 120.6 6.5 72 508-592 1-72 (502)
89 PRK08244 hypothetical protein; 99.0 3E-10 6.5E-15 120.9 6.0 70 510-592 2-71 (493)
90 PRK11244 phnP carbon-phosphoru 99.0 8.5E-10 1.8E-14 106.1 8.2 79 4-96 1-102 (250)
91 KOG1137|consensus 99.0 7.4E-10 1.6E-14 109.8 7.2 103 4-111 14-116 (668)
92 PRK09126 hypothetical protein; 99.0 6.3E-10 1.4E-14 115.2 7.2 77 508-591 1-77 (392)
93 TIGR02108 PQQ_syn_pqqB coenzym 99.0 3.6E-10 7.8E-15 110.4 4.8 72 18-101 39-118 (302)
94 PRK08294 phenol 2-monooxygenas 99.0 5.3E-10 1.1E-14 121.3 6.3 71 509-592 31-102 (634)
95 PRK07333 2-octaprenyl-6-methox 99.0 6E-10 1.3E-14 115.8 6.5 72 511-593 2-75 (403)
96 PRK07190 hypothetical protein; 99.0 6E-10 1.3E-14 117.4 6.1 71 508-591 3-73 (487)
97 PRK06126 hypothetical protein; 98.9 9.4E-10 2E-14 118.7 6.8 72 506-590 3-74 (545)
98 PRK07364 2-octaprenyl-6-methox 98.9 8.6E-10 1.9E-14 115.1 6.3 73 509-592 17-89 (415)
99 PRK06996 hypothetical protein; 98.9 1.4E-09 2.9E-14 112.6 7.2 72 506-583 7-78 (398)
100 PRK07045 putative monooxygenas 98.9 1.1E-09 2.5E-14 113.0 6.4 66 508-585 3-68 (388)
101 PRK07608 ubiquinone biosynthes 98.9 1.8E-09 3.8E-14 111.7 7.2 78 508-592 3-80 (388)
102 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 1.3E-09 2.8E-14 112.3 5.7 73 510-593 2-74 (390)
103 PRK05732 2-octaprenyl-6-methox 98.9 2.1E-09 4.6E-14 111.4 7.3 80 508-592 1-80 (395)
104 PF01494 FAD_binding_3: FAD bi 98.9 1.5E-09 3.2E-14 110.9 5.6 64 510-585 1-64 (356)
105 PRK06834 hypothetical protein; 98.9 2E-09 4.3E-14 113.6 6.5 67 508-585 1-67 (488)
106 PRK02126 ribonuclease Z; Provi 98.9 3.4E-09 7.3E-14 105.1 7.7 86 4-105 5-95 (334)
107 TIGR01984 UbiH 2-polyprenyl-6- 98.9 2.5E-09 5.4E-14 110.3 6.8 71 512-591 1-72 (382)
108 PLN02985 squalene monooxygenas 98.9 2.9E-09 6.3E-14 112.6 7.0 76 506-593 39-114 (514)
109 PLN02469 hydroxyacylglutathion 98.9 2.4E-09 5.3E-14 102.3 5.8 77 4-95 1-80 (258)
110 PRK08243 4-hydroxybenzoate 3-m 98.9 2.4E-09 5.1E-14 110.6 5.9 73 510-593 2-74 (392)
111 TIGR01988 Ubi-OHases Ubiquinon 98.9 4E-09 8.8E-14 108.9 7.3 73 512-591 1-73 (385)
112 PRK08163 salicylate hydroxylas 98.8 3.6E-09 7.8E-14 109.7 6.1 65 509-585 3-67 (396)
113 PRK06183 mhpA 3-(3-hydroxyphen 98.8 4.2E-09 9.2E-14 113.2 6.4 71 508-591 8-78 (538)
114 PTZ00367 squalene epoxidase; P 98.8 4.6E-09 1E-13 111.6 6.6 74 508-593 31-104 (567)
115 smart00849 Lactamase_B Metallo 98.8 6.6E-09 1.4E-13 95.0 5.9 76 16-101 5-80 (183)
116 PRK08132 FAD-dependent oxidore 98.8 6.9E-09 1.5E-13 111.9 6.8 65 509-585 22-86 (547)
117 PRK07588 hypothetical protein; 98.8 5.3E-09 1.1E-13 108.1 5.4 69 512-593 2-70 (391)
118 PRK06475 salicylate hydroxylas 98.8 8.1E-09 1.7E-13 107.0 6.1 63 511-585 3-65 (400)
119 PRK05868 hypothetical protein; 98.8 7.2E-09 1.6E-13 105.9 5.6 69 512-593 3-71 (372)
120 PRK06753 hypothetical protein; 98.8 8.3E-09 1.8E-13 106.1 5.9 68 512-592 2-69 (373)
121 PF00753 Lactamase_B: Metallo- 98.8 2.4E-09 5.1E-14 98.7 1.5 64 16-85 5-68 (194)
122 PRK07538 hypothetical protein; 98.7 9.5E-09 2.1E-13 106.9 5.8 69 511-592 1-69 (413)
123 PRK10241 hydroxyacylglutathion 98.7 2E-08 4.4E-13 96.0 5.7 76 5-95 2-79 (251)
124 PLN02398 hydroxyacylglutathion 98.7 2.3E-08 5E-13 97.9 5.6 79 3-96 75-155 (329)
125 PRK04286 hypothetical protein; 98.7 1.2E-08 2.7E-13 100.0 3.7 94 4-97 1-105 (298)
126 PRK11921 metallo-beta-lactamas 98.7 1.6E-08 3.5E-13 103.7 4.3 77 16-100 32-108 (394)
127 TIGR03413 GSH_gloB hydroxyacyl 98.7 1.8E-08 3.9E-13 96.3 4.2 66 18-96 11-77 (248)
128 PLN02962 hydroxyacylglutathion 98.6 2.5E-08 5.5E-13 94.6 4.8 69 16-94 22-94 (251)
129 PRK06847 hypothetical protein; 98.6 4E-08 8.7E-13 101.1 6.3 69 510-591 4-72 (375)
130 PRK07236 hypothetical protein; 98.6 5.4E-08 1.2E-12 100.4 7.1 65 508-583 4-68 (386)
131 TIGR00361 ComEC_Rec2 DNA inter 98.6 8.1E-08 1.8E-12 105.1 7.6 85 4-95 440-524 (662)
132 TIGR03307 PhnP phosphonate met 98.6 9.7E-08 2.1E-12 91.2 6.5 66 17-96 27-92 (238)
133 KOG2614|consensus 98.6 7.8E-08 1.7E-12 94.0 5.7 70 510-592 2-71 (420)
134 PRK05335 tRNA (uracil-5-)-meth 98.5 1.1E-07 2.5E-12 95.6 6.2 67 511-581 3-69 (436)
135 PRK00685 metal-dependent hydro 98.5 2.1E-07 4.6E-12 88.3 7.9 75 4-97 1-75 (228)
136 PRK05452 anaerobic nitric oxid 98.5 5E-08 1.1E-12 101.9 3.6 77 16-100 34-110 (479)
137 PRK11539 ComEC family competen 98.5 1.6E-07 3.4E-12 104.2 7.1 84 4-94 501-584 (755)
138 PRK11445 putative oxidoreducta 98.4 3.1E-07 6.8E-12 93.2 7.0 62 511-581 2-63 (351)
139 COG2333 ComEC Predicted hydrol 98.4 5.9E-07 1.3E-11 86.2 7.6 83 5-98 45-127 (293)
140 PF01946 Thi4: Thi4 family; PD 98.4 3.2E-07 6.8E-12 82.4 5.2 67 509-580 16-82 (230)
141 TIGR03219 salicylate_mono sali 98.4 3E-07 6.4E-12 95.8 5.8 62 512-585 2-64 (414)
142 PLN02927 antheraxanthin epoxid 98.4 5E-07 1.1E-11 97.0 7.1 65 508-580 79-143 (668)
143 KOG1298|consensus 98.4 3.5E-07 7.7E-12 87.9 4.8 74 505-592 40-115 (509)
144 COG1635 THI4 Ribulose 1,5-bisp 98.3 7.9E-07 1.7E-11 79.2 5.8 66 510-580 30-95 (262)
145 COG1235 PhnP Metal-dependent h 98.3 3.3E-07 7.2E-12 88.9 3.5 84 1-98 1-98 (269)
146 PLN00093 geranylgeranyl diphos 98.3 7.9E-07 1.7E-11 92.7 6.4 63 506-584 35-97 (450)
147 KOG0813|consensus 98.3 3.5E-07 7.6E-12 85.0 2.6 73 17-94 13-85 (265)
148 KOG1135|consensus 98.3 3E-06 6.5E-11 87.0 9.3 97 4-107 2-98 (764)
149 TIGR02023 BchP-ChlP geranylger 98.2 1.4E-06 3.1E-11 89.8 5.8 58 511-584 1-58 (388)
150 COG0426 FpaA Uncharacterized f 98.2 9.8E-07 2.1E-11 86.8 4.3 86 14-107 33-118 (388)
151 COG0491 GloB Zn-dependent hydr 98.2 1.6E-06 3.5E-11 83.6 5.8 82 5-94 13-95 (252)
152 TIGR02032 GG-red-SF geranylger 98.2 1.6E-06 3.6E-11 85.8 5.5 57 511-579 1-57 (295)
153 PRK04176 ribulose-1,5-biphosph 98.1 1.4E-05 3E-10 76.8 9.6 67 509-580 24-90 (257)
154 TIGR02028 ChlP geranylgeranyl 98.1 3.8E-06 8.3E-11 86.7 5.8 58 511-584 1-58 (398)
155 COG0644 FixC Dehydrogenases (f 98.1 4.5E-06 9.7E-11 86.2 6.2 38 508-549 1-38 (396)
156 TIGR00292 thiazole biosynthesi 98.0 9.3E-06 2E-10 77.7 6.9 67 509-580 20-86 (254)
157 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 5.1E-06 1.1E-10 84.5 4.8 68 511-582 1-68 (433)
158 PRK10015 oxidoreductase; Provi 98.0 8E-06 1.7E-10 85.0 6.4 37 508-548 3-39 (429)
159 PLN02463 lycopene beta cyclase 98.0 7.7E-06 1.7E-10 84.9 5.6 61 507-583 25-85 (447)
160 PRK10157 putative oxidoreducta 98.0 6.6E-06 1.4E-10 85.8 5.0 36 509-548 4-39 (428)
161 PF12706 Lactamase_B_2: Beta-l 97.9 4.4E-06 9.5E-11 77.1 2.3 44 59-102 28-72 (194)
162 PF13450 NAD_binding_8: NAD(P) 97.9 1.5E-05 3.3E-10 58.9 4.0 30 515-548 1-30 (68)
163 TIGR02650 RNase_Z_T_toga ribon 97.9 1.5E-05 3.2E-10 75.5 4.5 72 25-109 17-95 (277)
164 TIGR01373 soxB sarcosine oxida 97.8 4.2E-05 9.1E-10 79.6 8.0 53 494-549 14-67 (407)
165 COG2081 Predicted flavoprotein 97.8 2.3E-05 4.9E-10 77.0 4.8 39 508-550 1-39 (408)
166 COG3075 GlpB Anaerobic glycero 97.8 2.4E-05 5.3E-10 74.1 4.7 36 509-548 1-36 (421)
167 PRK13369 glycerol-3-phosphate 97.8 3.8E-05 8.3E-10 81.9 6.9 38 508-549 4-41 (502)
168 PRK11259 solA N-methyltryptoph 97.8 2.6E-05 5.7E-10 80.2 4.7 36 509-548 2-37 (376)
169 PRK12266 glpD glycerol-3-phosp 97.7 3.9E-05 8.4E-10 81.8 6.0 36 509-548 5-40 (508)
170 KOG2121|consensus 97.7 7.7E-06 1.7E-10 85.2 -0.5 78 3-84 442-525 (746)
171 PF03486 HI0933_like: HI0933-l 97.7 3.5E-05 7.6E-10 78.8 4.3 35 511-549 1-35 (409)
172 COG0492 TrxB Thioredoxin reduc 97.7 5E-05 1.1E-09 74.4 4.8 36 508-547 1-37 (305)
173 PLN02464 glycerol-3-phosphate 97.7 7.6E-05 1.6E-09 81.3 6.6 56 509-575 70-125 (627)
174 TIGR03364 HpnW_proposed FAD de 97.6 8.1E-05 1.8E-09 76.2 6.3 34 511-548 1-34 (365)
175 COG1233 Phytoene dehydrogenase 97.6 4.7E-05 1E-09 80.6 4.5 37 508-548 1-37 (487)
176 TIGR01377 soxA_mon sarcosine o 97.6 5.2E-05 1.1E-09 78.1 4.5 34 511-548 1-34 (380)
177 PLN02661 Putative thiazole syn 97.6 0.00014 3.1E-09 71.7 6.5 68 509-580 91-158 (357)
178 PF13483 Lactamase_B_3: Beta-l 97.5 0.00016 3.5E-09 64.5 6.1 52 5-76 1-52 (163)
179 PF05834 Lycopene_cycl: Lycope 97.5 8E-05 1.7E-09 76.2 4.7 34 512-549 1-36 (374)
180 PRK08010 pyridine nucleotide-d 97.5 8.8E-05 1.9E-09 77.9 4.8 36 508-547 1-36 (441)
181 PF13691 Lactamase_B_4: tRNase 97.5 0.00018 4E-09 51.3 4.8 49 18-76 13-63 (63)
182 COG3380 Predicted NAD/FAD-depe 97.5 0.00011 2.4E-09 68.0 4.5 62 511-576 2-67 (331)
183 PRK08255 salicylyl-CoA 5-hydro 97.5 0.00015 3.2E-09 81.2 6.3 57 512-578 2-58 (765)
184 TIGR03378 glycerol3P_GlpB glyc 97.5 0.00014 3.1E-09 73.8 5.5 50 511-578 1-50 (419)
185 PTZ00363 rab-GDP dissociation 97.5 0.00014 3.1E-09 75.2 5.7 37 508-548 2-38 (443)
186 TIGR01790 carotene-cycl lycope 97.5 0.0001 2.3E-09 76.1 4.7 33 512-548 1-33 (388)
187 PLN02697 lycopene epsilon cycl 97.5 0.00012 2.6E-09 77.5 5.1 37 507-547 105-141 (529)
188 TIGR02731 phytoene_desat phyto 97.5 0.00017 3.8E-09 76.1 6.3 68 512-583 1-76 (453)
189 PRK11709 putative L-ascorbate 97.5 0.00028 6E-09 70.7 7.3 40 59-98 108-149 (355)
190 PRK05192 tRNA uridine 5-carbox 97.4 0.00012 2.5E-09 77.7 4.4 36 508-547 2-37 (618)
191 PF01266 DAO: FAD dependent ox 97.4 0.00013 2.7E-09 74.4 4.6 62 512-577 1-71 (358)
192 PRK07251 pyridine nucleotide-d 97.4 0.00014 3E-09 76.4 4.8 36 508-547 1-36 (438)
193 COG0665 DadA Glycine/D-amino a 97.4 0.00014 3E-09 75.1 4.8 38 508-549 2-39 (387)
194 PF04820 Trp_halogenase: Trypt 97.4 8.7E-05 1.9E-09 77.7 3.2 61 512-585 1-66 (454)
195 PRK11101 glpA sn-glycerol-3-ph 97.4 0.00016 3.4E-09 77.8 5.1 37 508-548 4-40 (546)
196 PRK05249 soluble pyridine nucl 97.4 0.00015 3.3E-09 76.7 4.9 37 507-547 2-38 (461)
197 PRK12409 D-amino acid dehydrog 97.4 0.00014 3E-09 75.8 4.5 33 511-547 2-34 (410)
198 PF12831 FAD_oxidored: FAD dep 97.4 0.00013 2.8E-09 76.1 4.2 33 512-548 1-33 (428)
199 PRK05257 malate:quinone oxidor 97.4 0.00015 3.2E-09 76.5 4.7 39 508-548 3-41 (494)
200 PRK08274 tricarballylate dehyd 97.4 0.00016 3.6E-09 76.5 4.9 35 509-547 3-37 (466)
201 PRK06370 mercuric reductase; V 97.4 0.00017 3.7E-09 76.2 5.0 37 507-547 2-38 (463)
202 KOG2415|consensus 97.4 0.00012 2.7E-09 71.5 3.5 43 508-550 74-118 (621)
203 PF00732 GMC_oxred_N: GMC oxid 97.4 0.00016 3.4E-09 71.7 4.3 36 511-550 1-37 (296)
204 PTZ00383 malate:quinone oxidor 97.4 0.00019 4.1E-09 75.5 4.8 40 506-547 41-80 (497)
205 PF00070 Pyr_redox: Pyridine n 97.4 0.00054 1.2E-08 52.7 6.2 55 512-579 1-55 (80)
206 TIGR01377 soxA_mon sarcosine o 97.3 0.016 3.5E-07 59.6 18.9 74 166-243 139-213 (380)
207 COG0579 Predicted dehydrogenas 97.3 0.00021 4.5E-09 72.6 4.5 40 508-549 1-40 (429)
208 TIGR01421 gluta_reduc_1 glutat 97.3 0.0002 4.4E-09 75.2 4.4 35 509-547 1-35 (450)
209 COG0578 GlpA Glycerol-3-phosph 97.3 0.00035 7.6E-09 72.6 5.9 62 506-578 8-69 (532)
210 COG2220 Predicted Zn-dependent 97.3 0.00056 1.2E-08 66.1 7.1 69 3-82 6-74 (258)
211 PRK06115 dihydrolipoamide dehy 97.3 0.00023 5.1E-09 75.1 4.8 35 508-546 1-35 (466)
212 KOG0029|consensus 97.3 0.00024 5.1E-09 74.6 4.6 39 506-548 11-49 (501)
213 PRK13339 malate:quinone oxidor 97.3 0.00044 9.6E-09 72.5 6.6 36 508-545 4-39 (497)
214 PRK06116 glutathione reductase 97.3 0.00026 5.6E-09 74.7 4.7 35 509-547 3-37 (450)
215 PRK07208 hypothetical protein; 97.3 0.00027 5.8E-09 75.3 4.7 71 508-582 2-79 (479)
216 PRK07843 3-ketosteroid-delta-1 97.3 0.00037 8.1E-09 75.2 5.8 66 508-583 5-70 (557)
217 PRK11728 hydroxyglutarate oxid 97.3 0.00029 6.3E-09 72.9 4.8 36 510-547 2-37 (393)
218 TIGR03329 Phn_aa_oxid putative 97.3 0.00032 6.9E-09 74.1 5.1 39 508-548 22-60 (460)
219 TIGR01292 TRX_reduct thioredox 97.2 0.00028 6.1E-09 70.0 4.3 33 511-547 1-33 (300)
220 PRK05329 anaerobic glycerol-3- 97.2 0.00032 6.9E-09 72.1 4.7 34 510-547 2-35 (422)
221 PRK06292 dihydrolipoamide dehy 97.2 0.0003 6.5E-09 74.4 4.6 36 508-547 1-36 (460)
222 TIGR01424 gluta_reduc_2 glutat 97.2 0.00029 6.3E-09 74.1 4.4 34 510-547 2-35 (446)
223 TIGR02730 carot_isom carotene 97.2 0.00029 6.3E-09 75.2 4.5 34 511-548 1-34 (493)
224 TIGR01320 mal_quin_oxido malat 97.2 0.00031 6.7E-09 74.1 4.5 35 511-547 1-35 (483)
225 PF02112 PDEase_II: cAMP phosp 97.2 0.00025 5.4E-09 69.7 3.5 100 4-103 1-126 (335)
226 TIGR01789 lycopene_cycl lycope 97.2 0.00036 7.8E-09 71.1 4.7 35 512-548 1-35 (370)
227 TIGR02352 thiamin_ThiO glycine 97.2 0.0062 1.3E-07 61.5 13.7 63 167-233 132-195 (337)
228 PF00890 FAD_binding_2: FAD bi 97.2 0.00032 6.9E-09 73.3 4.4 33 512-548 1-33 (417)
229 TIGR03143 AhpF_homolog putativ 97.2 0.00036 7.8E-09 75.3 4.7 34 510-547 4-37 (555)
230 PRK00711 D-amino acid dehydrog 97.2 0.00036 7.7E-09 72.9 4.6 32 512-547 2-33 (416)
231 PRK14694 putative mercuric red 97.2 0.00039 8.5E-09 73.6 4.9 37 507-547 3-39 (468)
232 TIGR00031 UDP-GALP_mutase UDP- 97.2 0.0004 8.6E-09 70.2 4.6 33 511-547 2-34 (377)
233 PRK02106 choline dehydrogenase 97.2 0.00043 9.2E-09 75.0 5.0 38 508-548 3-40 (560)
234 PRK01747 mnmC bifunctional tRN 97.2 0.00035 7.6E-09 77.3 4.5 34 510-547 260-293 (662)
235 TIGR00562 proto_IX_ox protopor 97.2 0.00064 1.4E-08 72.0 6.3 73 511-583 3-82 (462)
236 PLN02612 phytoene desaturase 97.2 0.00078 1.7E-08 72.8 6.9 73 507-583 90-170 (567)
237 PRK06416 dihydrolipoamide dehy 97.2 0.00039 8.5E-09 73.5 4.6 35 509-547 3-37 (462)
238 PRK05976 dihydrolipoamide dehy 97.1 0.00046 1E-08 73.2 4.9 35 509-547 3-37 (472)
239 PRK06467 dihydrolipoamide dehy 97.1 0.00046 1E-08 73.0 4.7 35 509-547 3-37 (471)
240 TIGR02732 zeta_caro_desat caro 97.1 0.00082 1.8E-08 71.0 6.3 69 512-584 1-77 (474)
241 PRK07818 dihydrolipoamide dehy 97.1 0.0005 1.1E-08 72.7 4.8 35 509-547 3-37 (466)
242 COG1231 Monoamine oxidase [Ami 97.1 0.00061 1.3E-08 68.3 4.9 37 508-548 5-41 (450)
243 PRK06481 fumarate reductase fl 97.1 0.00049 1.1E-08 73.4 4.6 36 509-548 60-95 (506)
244 TIGR02733 desat_CrtD C-3',4' d 97.1 0.00048 1E-08 73.6 4.5 34 511-548 2-35 (492)
245 PF07992 Pyr_redox_2: Pyridine 97.1 0.00062 1.3E-08 63.0 4.7 32 512-547 1-32 (201)
246 PLN02487 zeta-carotene desatur 97.1 0.00096 2.1E-08 71.4 6.4 70 511-584 76-153 (569)
247 PRK07121 hypothetical protein; 97.1 0.00058 1.2E-08 72.8 4.7 36 509-548 19-54 (492)
248 PLN02268 probable polyamine ox 97.0 0.00059 1.3E-08 71.7 4.7 34 511-548 1-34 (435)
249 PRK12416 protoporphyrinogen ox 97.0 0.00088 1.9E-08 71.0 6.0 72 512-583 3-83 (463)
250 KOG2820|consensus 97.0 0.00064 1.4E-08 65.0 4.3 39 508-550 5-43 (399)
251 PRK07233 hypothetical protein; 97.0 0.00056 1.2E-08 71.9 4.4 68 512-583 1-75 (434)
252 TIGR02053 MerA mercuric reduct 97.0 0.00059 1.3E-08 72.2 4.6 33 511-547 1-33 (463)
253 PRK11728 hydroxyglutarate oxid 97.0 0.011 2.3E-07 61.3 13.6 70 167-240 144-214 (393)
254 PRK11883 protoporphyrinogen ox 97.0 0.00058 1.3E-08 72.2 4.3 67 512-582 2-77 (451)
255 TIGR01350 lipoamide_DH dihydro 97.0 0.00066 1.4E-08 71.9 4.4 32 511-546 2-33 (461)
256 PRK08641 sdhA succinate dehydr 97.0 0.00066 1.4E-08 73.7 4.3 36 509-548 2-37 (589)
257 COG3349 Uncharacterized conser 97.0 0.00069 1.5E-08 69.3 4.1 68 512-583 2-77 (485)
258 COG0562 Glf UDP-galactopyranos 97.0 0.00084 1.8E-08 63.9 4.3 34 511-548 2-35 (374)
259 TIGR01813 flavo_cyto_c flavocy 97.0 0.00072 1.6E-08 71.0 4.4 33 512-548 1-34 (439)
260 COG3573 Predicted oxidoreducta 97.0 0.0011 2.3E-08 63.2 5.0 38 508-549 3-40 (552)
261 COG1232 HemY Protoporphyrinoge 97.0 0.001 2.2E-08 68.3 5.2 69 512-584 2-79 (444)
262 PRK10262 thioredoxin reductase 97.0 0.00077 1.7E-08 67.6 4.3 35 508-546 4-38 (321)
263 PRK12834 putative FAD-binding 96.9 0.00087 1.9E-08 72.3 4.9 35 509-547 3-37 (549)
264 PLN02507 glutathione reductase 96.9 0.00079 1.7E-08 71.6 4.4 36 506-545 21-56 (499)
265 PRK06327 dihydrolipoamide dehy 96.9 0.00089 1.9E-08 71.0 4.7 33 509-545 3-35 (475)
266 PTZ00052 thioredoxin reductase 96.9 0.00081 1.8E-08 71.5 4.4 33 510-546 5-37 (499)
267 TIGR02734 crtI_fam phytoene de 96.9 0.00072 1.6E-08 72.4 4.0 32 513-548 1-32 (502)
268 PRK06452 sdhA succinate dehydr 96.9 0.00088 1.9E-08 72.4 4.6 36 509-548 4-39 (566)
269 PRK08626 fumarate reductase fl 96.9 0.00089 1.9E-08 73.4 4.6 37 508-548 3-39 (657)
270 COG2072 TrkA Predicted flavopr 96.9 0.00094 2E-08 69.6 4.6 39 506-548 4-43 (443)
271 TIGR02730 carot_isom carotene 96.9 0.098 2.1E-06 55.9 20.1 65 172-238 229-293 (493)
272 PRK07803 sdhA succinate dehydr 96.9 0.00097 2.1E-08 72.9 4.8 37 508-548 6-42 (626)
273 PRK13748 putative mercuric red 96.9 0.00096 2.1E-08 72.5 4.8 35 509-547 97-131 (561)
274 PRK12831 putative oxidoreducta 96.9 0.0019 4.1E-08 68.1 6.8 36 508-547 138-173 (464)
275 PTZ00058 glutathione reductase 96.9 0.0011 2.4E-08 71.1 5.0 37 507-547 45-81 (561)
276 PF13738 Pyr_redox_3: Pyridine 96.9 0.0009 2E-08 62.1 3.9 31 514-548 1-32 (203)
277 PTZ00139 Succinate dehydrogena 96.9 0.001 2.2E-08 72.5 4.7 36 509-548 28-63 (617)
278 PRK05945 sdhA succinate dehydr 96.9 0.00092 2E-08 72.5 4.3 39 508-548 1-39 (575)
279 PRK07057 sdhA succinate dehydr 96.9 0.0011 2.3E-08 72.1 4.8 36 508-547 10-45 (591)
280 PRK12837 3-ketosteroid-delta-1 96.9 0.00097 2.1E-08 71.3 4.4 34 510-548 7-40 (513)
281 PRK15317 alkyl hydroperoxide r 96.9 0.001 2.3E-08 71.2 4.7 35 508-546 209-243 (517)
282 TIGR01373 soxB sarcosine oxida 96.9 0.027 5.8E-07 58.6 15.1 76 168-246 179-256 (407)
283 TIGR02462 pyranose_ox pyranose 96.9 0.001 2.2E-08 70.4 4.4 35 511-549 1-35 (544)
284 PRK12842 putative succinate de 96.9 0.0012 2.5E-08 71.8 5.0 37 508-548 7-43 (574)
285 PLN02568 polyamine oxidase 96.9 0.0012 2.6E-08 70.6 5.0 42 507-548 2-44 (539)
286 PRK08401 L-aspartate oxidase; 96.9 0.001 2.3E-08 70.2 4.5 34 511-548 2-35 (466)
287 PRK07804 L-aspartate oxidase; 96.8 0.0012 2.6E-08 71.0 5.0 37 508-548 14-50 (541)
288 PRK06069 sdhA succinate dehydr 96.8 0.0011 2.4E-08 72.0 4.5 37 508-548 3-42 (577)
289 PLN02172 flavin-containing mon 96.8 0.0014 3E-08 68.8 5.1 37 508-548 8-44 (461)
290 KOG2853|consensus 96.8 0.00086 1.9E-08 64.1 3.1 42 509-550 85-126 (509)
291 PLN00128 Succinate dehydrogena 96.8 0.0011 2.5E-08 72.2 4.6 36 509-548 49-84 (635)
292 PRK09078 sdhA succinate dehydr 96.8 0.0012 2.6E-08 71.8 4.6 36 509-548 11-46 (598)
293 TIGR03140 AhpF alkyl hydropero 96.8 0.0013 2.8E-08 70.4 4.6 35 508-546 210-244 (515)
294 TIGR01812 sdhA_frdA_Gneg succi 96.8 0.0012 2.6E-08 71.7 4.4 33 512-548 1-33 (566)
295 TIGR03315 Se_ygfK putative sel 96.8 0.0013 2.7E-08 74.4 4.5 36 509-548 536-571 (1012)
296 PRK12835 3-ketosteroid-delta-1 96.7 0.0014 3.1E-08 70.9 4.5 36 509-548 10-45 (584)
297 PLN02546 glutathione reductase 96.7 0.0017 3.7E-08 69.6 4.9 36 506-545 75-110 (558)
298 PRK12775 putative trifunctiona 96.7 0.0028 6.1E-08 72.8 6.9 64 510-579 430-495 (1006)
299 PRK04176 ribulose-1,5-biphosph 96.7 0.0044 9.6E-08 59.5 7.2 70 167-238 99-180 (257)
300 PLN02815 L-aspartate oxidase 96.7 0.0017 3.7E-08 70.2 4.7 37 507-548 26-62 (594)
301 PRK12409 D-amino acid dehydrog 96.7 0.051 1.1E-06 56.5 15.7 65 172-239 197-267 (410)
302 PLN02576 protoporphyrinogen ox 96.7 0.0017 3.7E-08 69.5 4.7 37 509-548 11-47 (496)
303 PRK07573 sdhA succinate dehydr 96.7 0.0017 3.6E-08 71.1 4.6 35 509-547 34-68 (640)
304 PRK08958 sdhA succinate dehydr 96.7 0.0018 3.9E-08 70.3 4.7 36 509-548 6-41 (588)
305 PF01134 GIDA: Glucose inhibit 96.7 0.0016 3.6E-08 65.4 4.0 29 512-544 1-29 (392)
306 PRK06175 L-aspartate oxidase; 96.7 0.0016 3.4E-08 68.0 4.1 35 509-548 3-37 (433)
307 PRK12844 3-ketosteroid-delta-1 96.6 0.0019 4.2E-08 69.6 4.6 35 510-548 6-40 (557)
308 TIGR01372 soxA sarcosine oxida 96.6 0.0018 3.9E-08 74.7 4.6 36 509-548 162-197 (985)
309 COG1148 HdrA Heterodisulfide r 96.6 0.0021 4.5E-08 64.6 4.3 35 511-549 125-159 (622)
310 KOG1276|consensus 96.6 0.0048 1E-07 61.2 6.4 75 509-585 10-95 (491)
311 PRK06567 putative bifunctional 96.5 0.0042 9.2E-08 69.1 6.4 35 509-547 382-416 (1028)
312 PRK13977 myosin-cross-reactive 96.5 0.0035 7.6E-08 66.1 5.5 41 508-548 20-60 (576)
313 COG2303 BetA Choline dehydroge 96.5 0.0025 5.5E-08 68.3 4.6 37 508-548 5-41 (542)
314 PRK14727 putative mercuric red 96.5 0.0029 6.3E-08 67.1 5.0 36 507-546 13-48 (479)
315 PRK07395 L-aspartate oxidase; 96.5 0.0026 5.7E-08 68.4 4.7 36 508-548 7-42 (553)
316 PRK12839 hypothetical protein; 96.5 0.0029 6.4E-08 68.3 5.0 38 507-548 5-42 (572)
317 TIGR00551 nadB L-aspartate oxi 96.5 0.0025 5.3E-08 67.8 4.4 34 510-548 2-35 (488)
318 TIGR01318 gltD_gamma_fam gluta 96.5 0.011 2.3E-07 62.5 9.1 36 509-548 140-175 (467)
319 PRK12810 gltD glutamate syntha 96.5 0.0059 1.3E-07 64.6 7.2 36 509-548 142-177 (471)
320 TIGR02061 aprA adenosine phosp 96.5 0.0026 5.7E-08 68.8 4.6 33 512-548 1-37 (614)
321 PRK06263 sdhA succinate dehydr 96.5 0.0025 5.4E-08 68.7 4.4 35 509-548 6-40 (543)
322 PLN02612 phytoene desaturase 96.5 0.24 5.2E-06 53.7 19.5 63 173-237 309-371 (567)
323 PLN02852 ferredoxin-NADP+ redu 96.5 0.0035 7.6E-08 65.7 5.2 38 509-548 25-62 (491)
324 PF01266 DAO: FAD dependent ox 96.5 0.036 7.9E-07 56.2 12.7 66 164-233 139-205 (358)
325 KOG0814|consensus 96.5 0.001 2.2E-08 56.9 1.0 59 18-85 22-82 (237)
326 PLN02676 polyamine oxidase 96.5 0.0028 6.1E-08 67.1 4.5 36 509-548 25-61 (487)
327 TIGR01810 betA choline dehydro 96.4 0.0027 5.9E-08 68.3 4.3 33 512-548 1-34 (532)
328 COG1249 Lpd Pyruvate/2-oxoglut 96.4 0.0031 6.6E-08 65.4 4.4 36 508-547 2-37 (454)
329 PRK12769 putative oxidoreducta 96.4 0.0057 1.2E-07 67.6 6.8 36 509-548 326-361 (654)
330 PRK08275 putative oxidoreducta 96.4 0.003 6.5E-08 68.3 4.5 38 509-548 8-45 (554)
331 COG1053 SdhA Succinate dehydro 96.4 0.0034 7.3E-08 67.0 4.8 40 507-550 3-42 (562)
332 TIGR01316 gltA glutamate synth 96.4 0.0035 7.5E-08 65.9 4.9 37 507-547 130-166 (449)
333 PRK09231 fumarate reductase fl 96.4 0.003 6.5E-08 68.5 4.5 38 509-548 3-40 (582)
334 PRK09853 putative selenate red 96.4 0.0031 6.8E-08 71.0 4.5 35 510-548 539-573 (1019)
335 PRK12779 putative bifunctional 96.4 0.0031 6.7E-08 71.8 4.4 34 510-547 306-339 (944)
336 TIGR01438 TGR thioredoxin and 96.4 0.0033 7.1E-08 66.6 4.4 33 510-546 2-34 (484)
337 PRK06854 adenylylsulfate reduc 96.4 0.0036 7.8E-08 68.2 4.7 38 509-548 10-47 (608)
338 TIGR01423 trypano_reduc trypan 96.4 0.0035 7.6E-08 66.3 4.5 35 509-546 2-36 (486)
339 PLN02785 Protein HOTHEAD 96.3 0.0042 9.1E-08 67.1 5.0 36 508-548 53-88 (587)
340 PRK12845 3-ketosteroid-delta-1 96.3 0.0042 9.1E-08 66.9 4.9 36 508-548 14-49 (564)
341 PRK07233 hypothetical protein; 96.3 0.26 5.7E-06 51.6 18.5 62 172-237 198-259 (434)
342 PRK12416 protoporphyrinogen ox 96.3 0.24 5.3E-06 52.4 18.3 59 173-237 227-285 (463)
343 TIGR00292 thiazole biosynthesi 96.3 0.019 4.2E-07 55.0 8.9 69 167-237 95-176 (254)
344 PLN02328 lysine-specific histo 96.3 0.0046 1E-07 68.3 5.0 37 508-548 236-272 (808)
345 KOG0042|consensus 96.3 0.0026 5.5E-08 64.8 2.8 58 508-576 65-122 (680)
346 PLN02529 lysine-specific histo 96.3 0.0046 9.9E-08 67.9 4.8 37 508-548 158-194 (738)
347 PRK11749 dihydropyrimidine deh 96.3 0.0078 1.7E-07 63.5 6.4 37 508-548 138-174 (457)
348 TIGR00275 flavoprotein, HI0933 96.3 0.0027 5.8E-08 65.6 2.8 31 514-548 1-31 (400)
349 PTZ00153 lipoamide dehydrogena 96.2 0.0045 9.7E-08 67.5 4.5 34 509-546 115-148 (659)
350 PRK08071 L-aspartate oxidase; 96.2 0.0044 9.5E-08 66.2 4.4 34 510-548 3-36 (510)
351 PRK13800 putative oxidoreducta 96.2 0.0044 9.6E-08 70.8 4.6 36 509-548 12-47 (897)
352 PRK08205 sdhA succinate dehydr 96.2 0.0048 1E-07 67.0 4.7 35 509-548 4-38 (583)
353 TIGR00136 gidA glucose-inhibit 96.2 0.0045 9.9E-08 65.8 4.3 33 511-547 1-33 (617)
354 PTZ00306 NADH-dependent fumara 96.2 0.0046 9.9E-08 72.5 4.7 37 508-548 407-443 (1167)
355 PRK06134 putative FAD-binding 96.2 0.0059 1.3E-07 66.3 5.3 37 508-548 10-46 (581)
356 TIGR01176 fum_red_Fp fumarate 96.2 0.0044 9.5E-08 67.1 4.1 37 510-548 3-39 (580)
357 PF01593 Amino_oxidase: Flavin 96.1 0.059 1.3E-06 56.3 12.3 66 166-234 203-268 (450)
358 KOG2665|consensus 96.1 0.0051 1.1E-07 58.4 3.4 42 506-549 44-85 (453)
359 KOG1399|consensus 96.1 0.0056 1.2E-07 63.2 4.0 37 509-549 5-41 (448)
360 PRK12814 putative NADPH-depend 96.1 0.013 2.8E-07 64.5 7.1 36 509-548 192-227 (652)
361 PRK12809 putative oxidoreducta 96.0 0.012 2.6E-07 64.7 6.8 36 509-548 309-344 (639)
362 PRK06912 acoL dihydrolipoamide 96.0 0.0071 1.5E-07 63.9 4.5 32 512-547 2-33 (458)
363 PF13738 Pyr_redox_3: Pyridine 96.0 0.021 4.6E-07 52.8 7.2 62 168-232 78-139 (203)
364 KOG1238|consensus 96.0 0.0073 1.6E-07 63.5 4.3 39 508-549 55-93 (623)
365 PRK09077 L-aspartate oxidase; 96.0 0.0066 1.4E-07 65.3 4.2 35 509-548 7-41 (536)
366 PRK12778 putative bifunctional 95.9 0.0072 1.6E-07 67.9 4.5 35 509-547 430-464 (752)
367 KOG2960|consensus 95.8 0.0032 6.9E-08 56.0 0.9 35 511-547 77-111 (328)
368 PRK12770 putative glutamate sy 95.8 0.011 2.5E-07 59.9 5.0 36 509-548 17-52 (352)
369 TIGR01317 GOGAT_sm_gam glutama 95.8 0.019 4.1E-07 60.9 6.8 35 510-548 143-177 (485)
370 TIGR01811 sdhA_Bsu succinate d 95.8 0.0074 1.6E-07 65.7 3.6 31 513-547 1-31 (603)
371 PF14597 Lactamase_B_5: Metall 95.8 0.0061 1.3E-07 53.0 2.3 72 16-102 22-93 (199)
372 PRK12843 putative FAD-binding 95.8 0.01 2.2E-07 64.5 4.6 36 509-548 15-50 (578)
373 COG2015 Alkyl sulfatase and re 95.8 0.0038 8.2E-08 62.3 1.1 73 18-95 127-202 (655)
374 TIGR01320 mal_quin_oxido malat 95.7 0.085 1.8E-06 55.9 11.2 73 166-240 172-250 (483)
375 PRK05257 malate:quinone oxidor 95.7 0.1 2.2E-06 55.3 11.7 75 164-240 175-256 (494)
376 PRK07512 L-aspartate oxidase; 95.7 0.011 2.4E-07 63.1 4.4 37 506-548 5-41 (513)
377 PRK00711 D-amino acid dehydrog 95.7 0.38 8.2E-06 50.1 15.8 60 169-232 198-258 (416)
378 PRK13369 glycerol-3-phosphate 95.6 0.2 4.4E-06 53.5 13.9 65 168-235 151-220 (502)
379 PTZ00188 adrenodoxin reductase 95.5 0.019 4.1E-07 59.6 5.3 37 508-548 37-74 (506)
380 PRK12266 glpD glycerol-3-phosp 95.5 0.23 4.9E-06 53.2 13.6 61 169-232 152-217 (508)
381 PRK11883 protoporphyrinogen ox 95.5 0.94 2E-05 47.7 18.3 41 188-231 235-275 (451)
382 PRK12771 putative glutamate sy 95.5 0.015 3.2E-07 63.2 4.5 35 510-548 137-171 (564)
383 TIGR03467 HpnE squalene-associ 95.4 0.75 1.6E-05 47.8 17.2 61 173-237 198-259 (419)
384 COG2081 Predicted flavoprotein 95.4 0.056 1.2E-06 53.7 7.7 59 171-232 110-168 (408)
385 PLN03000 amine oxidase 95.4 0.016 3.5E-07 64.2 4.4 36 509-548 183-218 (881)
386 KOG4254|consensus 95.3 0.014 3.1E-07 58.2 3.3 45 498-546 2-46 (561)
387 PRK09754 phenylpropionate diox 95.3 0.019 4.2E-07 59.4 4.5 38 509-548 2-39 (396)
388 COG3634 AhpF Alkyl hydroperoxi 95.3 0.0092 2E-07 57.4 1.8 32 509-544 210-241 (520)
389 KOG0685|consensus 95.2 0.021 4.6E-07 57.7 4.3 37 509-548 20-56 (498)
390 PRK07846 mycothione reductase; 95.2 0.021 4.6E-07 60.0 4.4 32 510-547 1-32 (451)
391 PRK07845 flavoprotein disulfid 95.2 0.022 4.7E-07 60.3 4.5 32 512-547 3-34 (466)
392 PRK01747 mnmC bifunctional tRN 95.1 0.053 1.1E-06 60.2 7.6 61 168-232 404-464 (662)
393 PLN02676 polyamine oxidase 95.1 1.8 3.9E-05 46.0 18.6 43 187-232 245-287 (487)
394 COG1252 Ndh NADH dehydrogenase 95.1 0.028 6E-07 57.0 4.6 65 510-583 155-228 (405)
395 TIGR00562 proto_IX_ox protopor 95.0 1.3 2.7E-05 46.9 17.4 52 174-230 227-278 (462)
396 COG0029 NadB Aspartate oxidase 95.0 0.022 4.9E-07 57.9 3.7 33 512-549 9-41 (518)
397 COG1206 Gid NAD(FAD)-utilizing 95.0 0.02 4.3E-07 54.9 3.1 36 510-549 3-38 (439)
398 TIGR03452 mycothione_red mycot 95.0 0.025 5.5E-07 59.5 4.3 32 510-547 2-33 (452)
399 COG2248 Predicted hydrolase (m 94.9 0.013 2.7E-07 53.8 1.7 73 4-76 1-81 (304)
400 PF06039 Mqo: Malate:quinone o 94.9 0.032 7E-07 56.6 4.6 38 509-548 2-39 (488)
401 COG5212 PDE1 Low-affinity cAMP 94.9 0.011 2.4E-07 54.7 1.2 45 59-105 111-159 (356)
402 TIGR03197 MnmC_Cterm tRNA U-34 94.9 0.073 1.6E-06 54.8 7.3 62 167-232 130-191 (381)
403 PLN02976 amine oxidase 94.8 0.029 6.3E-07 64.9 4.5 36 509-548 692-727 (1713)
404 TIGR00275 flavoprotein, HI0933 94.8 0.19 4E-06 52.0 10.0 57 171-231 104-160 (400)
405 COG4529 Uncharacterized protei 94.7 0.038 8.2E-07 56.3 4.5 38 511-549 2-39 (474)
406 KOG2852|consensus 94.6 0.026 5.6E-07 53.1 2.9 67 511-577 11-85 (380)
407 TIGR02733 desat_CrtD C-3',4' d 94.6 3.4 7.4E-05 44.1 19.6 57 172-230 232-293 (492)
408 PRK11259 solA N-methyltryptoph 94.6 0.13 2.7E-06 52.9 8.4 62 166-232 144-205 (376)
409 COG0569 TrkA K+ transport syst 94.6 0.026 5.7E-07 53.0 3.0 65 512-581 2-66 (225)
410 PRK09564 coenzyme A disulfide 94.6 0.034 7.3E-07 58.6 4.1 35 512-548 2-36 (444)
411 PRK13984 putative oxidoreducta 94.6 0.037 8.1E-07 60.7 4.5 36 509-548 282-317 (604)
412 PRK04965 NADH:flavorubredoxin 94.5 0.13 2.8E-06 52.9 8.1 64 173-239 184-249 (377)
413 PLN02976 amine oxidase 94.5 12 0.00026 44.5 23.9 58 377-437 1150-1208(1713)
414 PF13454 NAD_binding_9: FAD-NA 94.5 0.046 1E-06 48.1 4.2 35 514-548 1-36 (156)
415 COG2907 Predicted NAD/FAD-bind 94.5 0.036 7.9E-07 53.6 3.6 69 509-582 7-87 (447)
416 COG0445 GidA Flavin-dependent 94.4 0.038 8.2E-07 57.0 3.6 35 509-547 3-37 (621)
417 KOG2415|consensus 94.3 3.2 7E-05 41.6 16.5 264 139-437 152-444 (621)
418 PTZ00318 NADH dehydrogenase-li 94.3 0.058 1.3E-06 56.3 5.0 37 508-548 8-44 (424)
419 PRK09897 hypothetical protein; 94.3 0.056 1.2E-06 57.5 4.8 35 511-547 2-36 (534)
420 COG0493 GltD NADPH-dependent g 94.2 0.047 1E-06 56.8 4.0 64 511-579 124-188 (457)
421 COG0579 Predicted dehydrogenas 94.2 0.17 3.6E-06 51.9 7.8 74 165-241 146-222 (429)
422 PF00070 Pyr_redox: Pyridine n 94.2 0.11 2.4E-06 39.8 5.1 41 172-215 40-80 (80)
423 PF00743 FMO-like: Flavin-bind 94.2 0.05 1.1E-06 58.1 4.3 34 512-549 3-36 (531)
424 TIGR02485 CobZ_N-term precorri 94.1 0.033 7.2E-07 58.3 2.9 30 515-548 1-30 (432)
425 PF13434 K_oxygenase: L-lysine 94.0 0.039 8.3E-07 55.5 3.0 38 510-550 2-39 (341)
426 PF00996 GDI: GDP dissociation 94.0 0.067 1.4E-06 55.1 4.6 36 509-548 3-38 (438)
427 PTZ00383 malate:quinone oxidor 93.8 0.39 8.5E-06 50.9 10.0 70 167-239 206-282 (497)
428 KOG1335|consensus 93.8 0.061 1.3E-06 52.8 3.6 35 509-547 38-72 (506)
429 PRK13512 coenzyme A disulfide 93.6 0.075 1.6E-06 55.8 4.4 35 512-548 3-37 (438)
430 TIGR02731 phytoene_desat phyto 93.4 5.9 0.00013 41.7 18.4 63 172-237 213-281 (453)
431 PLN02464 glycerol-3-phosphate 93.3 1.2 2.6E-05 48.9 13.2 69 168-238 228-304 (627)
432 PF03486 HI0933_like: HI0933-l 93.3 0.18 3.9E-06 51.9 6.4 60 170-231 107-166 (409)
433 PRK05249 soluble pyridine nucl 93.2 0.28 6.1E-06 51.9 8.0 60 172-234 216-275 (461)
434 COG0446 HcaD Uncharacterized N 93.2 0.15 3.3E-06 52.9 6.0 56 510-579 136-193 (415)
435 PRK05976 dihydrolipoamide dehy 93.0 0.18 4E-06 53.5 6.3 55 512-579 182-236 (472)
436 PRK09754 phenylpropionate diox 92.8 0.37 8.1E-06 49.8 8.0 57 173-233 187-243 (396)
437 PRK15317 alkyl hydroperoxide r 92.7 0.37 7.9E-06 51.8 8.0 60 169-231 263-322 (517)
438 PF01134 GIDA: Glucose inhibit 92.7 0.42 9.1E-06 48.4 7.8 63 166-231 89-152 (392)
439 KOG1800|consensus 92.6 0.17 3.8E-06 49.7 4.7 37 510-548 20-56 (468)
440 KOG2820|consensus 92.6 1 2.3E-05 43.8 9.8 78 163-240 144-223 (399)
441 COG2509 Uncharacterized FAD-de 92.5 0.44 9.5E-06 48.3 7.5 57 173-231 174-230 (486)
442 PRK04965 NADH:flavorubredoxin 92.5 0.26 5.7E-06 50.6 6.4 56 512-579 143-198 (377)
443 PLN02487 zeta-carotene desatur 92.5 8.8 0.00019 41.5 18.0 63 174-237 297-365 (569)
444 TIGR03169 Nterm_to_SelD pyridi 92.4 0.17 3.8E-06 51.6 5.0 35 512-547 1-35 (364)
445 TIGR02732 zeta_caro_desat caro 92.4 9.9 0.00021 40.3 18.2 63 174-237 221-289 (474)
446 TIGR01421 gluta_reduc_1 glutat 92.3 0.26 5.7E-06 51.8 6.2 55 512-579 168-222 (450)
447 KOG1137|consensus 92.3 1.4 3E-05 45.5 10.7 106 4-110 151-262 (668)
448 PRK06912 acoL dihydrolipoamide 92.3 0.29 6.3E-06 51.7 6.5 55 512-579 172-226 (458)
449 PF02737 3HCDH_N: 3-hydroxyacy 92.2 0.16 3.5E-06 45.9 3.9 33 512-548 1-33 (180)
450 KOG4716|consensus 92.2 0.13 2.8E-06 49.6 3.3 36 508-547 17-52 (503)
451 PRK06116 glutathione reductase 92.1 0.48 1E-05 50.0 7.9 58 173-232 209-266 (450)
452 PRK07251 pyridine nucleotide-d 92.1 0.31 6.7E-06 51.2 6.5 33 512-548 159-191 (438)
453 TIGR03329 Phn_aa_oxid putative 92.1 0.52 1.1E-05 49.8 8.2 61 167-232 178-238 (460)
454 PRK06115 dihydrolipoamide dehy 92.0 0.32 7E-06 51.4 6.5 56 511-579 175-230 (466)
455 PRK13339 malate:quinone oxidor 92.0 0.59 1.3E-05 49.4 8.2 75 164-240 176-257 (497)
456 PRK13512 coenzyme A disulfide 91.9 0.27 5.9E-06 51.6 5.7 56 512-580 150-205 (438)
457 PRK05192 tRNA uridine 5-carbox 91.5 0.56 1.2E-05 50.4 7.5 63 168-233 96-159 (618)
458 KOG4736|consensus 91.5 0.16 3.6E-06 47.9 3.0 52 18-82 96-147 (302)
459 TIGR01292 TRX_reduct thioredox 91.4 0.69 1.5E-05 45.6 7.8 59 169-231 54-112 (300)
460 TIGR02053 MerA mercuric reduct 91.0 0.44 9.4E-06 50.5 6.3 34 511-548 167-200 (463)
461 TIGR02734 crtI_fam phytoene de 91.0 0.7 1.5E-05 49.5 7.9 65 172-238 219-283 (502)
462 PRK06370 mercuric reductase; V 90.9 0.47 1E-05 50.2 6.4 33 512-548 173-205 (463)
463 TIGR03385 CoA_CoA_reduc CoA-di 90.9 0.48 1E-05 49.6 6.3 33 512-548 139-171 (427)
464 KOG2311|consensus 90.8 0.23 4.9E-06 50.3 3.4 36 508-547 26-61 (679)
465 COG1252 Ndh NADH dehydrogenase 90.7 0.34 7.4E-06 49.3 4.8 39 510-550 3-41 (405)
466 PF02558 ApbA: Ketopantoate re 90.6 0.37 7.9E-06 42.1 4.4 31 513-547 1-31 (151)
467 PRK06467 dihydrolipoamide dehy 90.6 0.5 1.1E-05 50.1 6.2 33 512-548 176-208 (471)
468 PRK06249 2-dehydropantoate 2-r 90.6 0.35 7.7E-06 48.1 4.8 36 508-547 3-38 (313)
469 TIGR03378 glycerol3P_GlpB glyc 90.5 1 2.2E-05 46.3 8.0 62 168-232 259-324 (419)
470 COG5044 MRS6 RAB proteins gera 90.4 0.42 9.1E-06 47.0 4.7 37 509-549 5-41 (434)
471 TIGR03140 AhpF alkyl hydropero 90.3 0.92 2E-05 48.7 8.0 60 169-231 264-323 (515)
472 PRK07845 flavoprotein disulfid 90.3 0.91 2E-05 48.1 7.8 59 173-234 219-277 (466)
473 PF13478 XdhC_C: XdhC Rossmann 90.3 0.35 7.6E-06 41.2 3.8 32 513-548 1-32 (136)
474 PRK14989 nitrite reductase sub 90.2 0.48 1E-05 53.7 6.0 56 512-579 147-202 (847)
475 PF12831 FAD_oxidored: FAD dep 90.2 0.085 1.8E-06 55.1 0.0 71 167-240 85-158 (428)
476 KOG2404|consensus 90.2 0.32 6.9E-06 46.7 3.7 32 512-547 11-42 (477)
477 PLN02507 glutathione reductase 90.0 1 2.2E-05 48.1 7.9 59 172-233 244-302 (499)
478 COG1233 Phytoene dehydrogenase 89.9 0.66 1.4E-05 49.3 6.4 62 166-229 215-279 (487)
479 PF03721 UDPG_MGDP_dh_N: UDP-g 89.9 0.29 6.2E-06 44.4 3.2 33 512-548 2-34 (185)
480 TIGR03862 flavo_PP4765 unchara 89.9 2.3 4.9E-05 43.2 9.8 68 170-242 84-163 (376)
481 TIGR02374 nitri_red_nirB nitri 89.8 0.56 1.2E-05 53.0 6.1 56 512-579 142-197 (785)
482 KOG3923|consensus 89.7 0.38 8.2E-06 45.8 3.8 40 509-548 2-44 (342)
483 PRK01438 murD UDP-N-acetylmura 89.7 0.39 8.5E-06 51.1 4.6 32 512-547 18-49 (480)
484 PF01210 NAD_Gly3P_dh_N: NAD-d 89.7 0.51 1.1E-05 41.5 4.5 32 512-547 1-32 (157)
485 PRK12770 putative glutamate sy 89.6 0.63 1.4E-05 47.2 5.8 32 512-547 174-206 (352)
486 TIGR01350 lipoamide_DH dihydro 89.6 1.1 2.3E-05 47.5 7.7 60 172-234 211-272 (461)
487 PTZ00058 glutathione reductase 89.4 0.69 1.5E-05 49.9 6.1 55 512-579 239-293 (561)
488 PLN02576 protoporphyrinogen ox 89.4 18 0.00038 38.7 17.0 32 378-415 455-486 (496)
489 PRK06416 dihydrolipoamide dehy 89.3 1.1 2.4E-05 47.4 7.5 59 172-233 213-274 (462)
490 PRK06129 3-hydroxyacyl-CoA deh 89.1 0.42 9.2E-06 47.4 4.0 32 512-547 4-35 (308)
491 KOG2844|consensus 89.0 0.4 8.6E-06 50.8 3.7 32 509-544 38-69 (856)
492 PTZ00363 rab-GDP dissociation 88.7 1.4 3E-05 46.0 7.5 58 172-230 232-289 (443)
493 TIGR01424 gluta_reduc_2 glutat 88.6 1.5 3.2E-05 46.2 7.9 58 172-232 207-264 (446)
494 PRK06719 precorrin-2 dehydroge 88.6 0.71 1.5E-05 40.6 4.6 32 510-545 13-44 (157)
495 PLN02568 polyamine oxidase 88.3 1.2 2.6E-05 47.9 7.0 51 173-228 243-293 (539)
496 PRK09897 hypothetical protein; 88.3 1.4 3.1E-05 47.1 7.4 50 177-229 112-164 (534)
497 PRK08293 3-hydroxybutyryl-CoA 88.2 0.57 1.2E-05 46.0 4.2 32 512-547 5-36 (287)
498 TIGR03385 CoA_CoA_reduc CoA-di 88.2 1.6 3.5E-05 45.6 7.8 57 172-233 179-235 (427)
499 TIGR01470 cysG_Nterm siroheme 88.1 0.76 1.7E-05 42.4 4.7 33 511-547 10-42 (205)
500 PF13454 NAD_binding_9: FAD-NA 88.1 2.4 5.1E-05 37.2 7.7 59 168-229 90-155 (156)
No 1
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=1.8e-41 Score=353.12 Aligned_cols=342 Identities=40% Similarity=0.689 Sum_probs=267.2
Q ss_pred cccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcC---CceEEeCCeEeEEecC----CCCCCceE
Q psy9964 137 MIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL---NIDIVYQKKVAHYELP----EQPLNNVK 209 (595)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~---gv~i~~~~~v~~v~~~----~~~~~~v~ 209 (595)
.+...+.+|+..+...+.|+... ...+.++.++|..|++.|.+.+.+. +++++++++|+++++. ++++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 83 QPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 45567888887766667777654 3456789999999999999999874 5999999999999752 12457899
Q ss_pred EEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEE
Q psy9964 210 IKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLV 289 (595)
Q Consensus 210 v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 289 (595)
|++.+|++++||+||||||++|.||+.+++...+..|.+.++++.+.....+.....++.|.++|+++++|++++..+++
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~~~~lPl~~~~~~~~ 241 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGPIALLPLPDNNSTLV 241 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCCEEEeECCCCCEEEE
Confidence 99999999999999999999999999999998888898888888887654445567788889999999999999889999
Q ss_pred EecCHhhHHHHhCCCchHHHHHHHHhc---CCCcchhhHHHHhhhhhhchhhhccc---cCCCcccCCCccceeccccce
Q psy9964 290 WATTPENAKALLQMPGESFVDALNSEF---NKPAELNESIQVATKFTHNVLEFFNL---STGNEQVVPPRVMSVEEKSRA 363 (595)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 363 (595)
|..+..........+.++|.+.+...+ +...+.....+.. ++++.+.+.. ........++.+..+......
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (437)
T TIGR01989 242 WSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYA---MEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRA 318 (437)
T ss_pred EeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccc---cccccccccccccccccccccCchhheeecccce
Confidence 999887777777777888888776666 1111110111111 1111111110 000011123333333333457
Q ss_pred eeeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHH
Q psy9964 364 AFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVM 443 (595)
Q Consensus 364 ~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~ 443 (595)
.||+....+++|..+||+|+|||||.|+|++|||+|+||+||.+|+++|.+....+.+.+...+|+.|+++|++++..++
T Consensus 319 ~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~ 398 (437)
T TIGR01989 319 AFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLL 398 (437)
T ss_pred eEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999999999999999999999999998877666543345799999999999999999
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHH
Q psy9964 444 LSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILC 482 (595)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 482 (595)
..++.+.++|..++++...+|+.++..++.+|++|+.++
T Consensus 399 ~~t~~l~~l~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~ 437 (437)
T TIGR01989 399 GLVDKLHKLYATDFPPVVALRTFGLNLTNYIGPLKNFIM 437 (437)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHhhhCHHhHHhhC
Confidence 999999999999999999999999999999999999863
No 2
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=2.2e-40 Score=341.75 Aligned_cols=315 Identities=29% Similarity=0.474 Sum_probs=248.3
Q ss_pred cccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEcCC
Q psy9964 137 MIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFESG 215 (595)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG 215 (595)
.+...+.+|+.+....+.|+....+.+..+|.++|..|+++|.+.+.+ .|++++++++|+++++ +++.++|++.||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~---~~~~v~v~~~~g 152 (400)
T PRK08013 76 SCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAW---GENEAFLTLKDG 152 (400)
T ss_pred ccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe---cCCeEEEEEcCC
Confidence 345677888765434455554332334568999999999999999988 6899999999999985 567899999999
Q ss_pred cEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCC-eEEEEecCH
Q psy9964 216 ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEF-SSLVWATTP 294 (595)
Q Consensus 216 ~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~ 294 (595)
+++++|+||||||++|.||+.++++.....|...++++.++... +.....+..|.++++++++|+.++. .+++|..+.
T Consensus 153 ~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ 231 (400)
T PRK08013 153 SMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEE-PHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSP 231 (400)
T ss_pred CEEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccC-CCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCH
Confidence 99999999999999999999999887777787777777776543 3334556677888899999998764 678898887
Q ss_pred hhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecccccccc
Q psy9964 295 ENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVR 374 (595)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (595)
+..........+.|.+.+...+.. .+.. . .+ ......||+....+++
T Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~-----------------~l~~--------------~-~~-~~~~~~~~l~~~~~~~ 278 (400)
T PRK08013 232 EEAQRMQQAPEEEFNRALAIAFDN-----------------RLGL--------------C-EL-ESERQVFPLTGRYARQ 278 (400)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhH-----------------hhCc--------------e-Ee-cCCccEEecceeeccc
Confidence 665544445555555554432210 0000 0 00 1123357777667899
Q ss_pred ccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhc
Q psy9964 375 YIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYR 454 (595)
Q Consensus 375 ~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~ 454 (595)
|++|||+|+|||||.|+|++|||+|+||+||.+|+++|......+.+.....+|+.|+++|++++..++..++.+.++|.
T Consensus 279 ~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~ 358 (400)
T PRK08013 279 FAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFA 358 (400)
T ss_pred ccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999876555544323458999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q psy9964 455 SSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRT 488 (595)
Q Consensus 455 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 488 (595)
.++++...+|+.++..++.+|++++.+++.++|.
T Consensus 359 ~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~g~ 392 (400)
T PRK08013 359 GNNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGL 392 (400)
T ss_pred CCchHHHHHHHHHHHHHhhCHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999874
No 3
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=4.5e-40 Score=341.06 Aligned_cols=316 Identities=32% Similarity=0.569 Sum_probs=252.9
Q ss_pred ccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC
Q psy9964 136 VMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG 215 (595)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG 215 (595)
..+...+.+++.++...+.|+......+..++.++|..|.+.|.+.+.+.|++++++++++++++ ++++++|+++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~---~~~~v~v~~~~g 152 (405)
T PRK05714 76 ASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRR---SGDDWLLTLADG 152 (405)
T ss_pred CccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEE---cCCeEEEEECCC
Confidence 34557788898877666777654423355689999999999999999888999999999999985 566799999999
Q ss_pred cEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCC----CeEEEEe
Q psy9964 216 ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDE----FSSLVWA 291 (595)
Q Consensus 216 ~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~----~~~~~~~ 291 (595)
+++++|+||||||++|.||+.+++......|...+++..+.... +.....|..+.+.++++++|++++ ..+++|.
T Consensus 153 ~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~ 231 (405)
T PRK05714 153 RQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSE-PHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWS 231 (405)
T ss_pred CEEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCC-CCCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEE
Confidence 99999999999999999999998877666777777766665433 334567777889999999999743 2456788
Q ss_pred cCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccc
Q psy9964 292 TTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGH 371 (595)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (595)
.++.........+.+.|.+++.+.|... +.+++ .......||+....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~--------------------~~~~~~~~~l~~~~ 278 (405)
T PRK05714 232 TTPEEAERLMALDDDAFCAALERAFEGR-------------LGEVL--------------------SADPRLCVPLRQRH 278 (405)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHH-------------hCCce--------------------ecCCccEEecceee
Confidence 7776555555556666666654433210 00000 11223457777777
Q ss_pred cccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHH
Q psy9964 372 SVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYR 451 (595)
Q Consensus 372 ~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~ 451 (595)
+++|++|||+|+|||||+|+|++|||+|+||+||..|+++|..+...+.+.+...+|+.|+++|++++..++..++.+.+
T Consensus 279 ~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 358 (405)
T PRK05714 279 AKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFER 358 (405)
T ss_pred hhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999876555543334689999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q psy9964 452 VYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRT 488 (595)
Q Consensus 452 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 488 (595)
+|+.++++...+|+.+++.++.+|++|+.+++.++|.
T Consensus 359 ~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 395 (405)
T PRK05714 359 LFQADPLPLRWLRNTGLKLVDQMPEAKALFVRQALGL 395 (405)
T ss_pred HHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999875
No 4
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=4.6e-40 Score=336.33 Aligned_cols=306 Identities=26% Similarity=0.454 Sum_probs=243.5
Q ss_pred hhhcccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEE
Q psy9964 132 ILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKI 210 (595)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v 210 (595)
+.+.+.+...+.+++.++...+.++.. ....+||.++|.+|++.|++++.+ .+++++++++++++.+ ++++++|
T Consensus 66 l~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~---~~~~v~v 140 (374)
T PRK06617 66 LEKFVAEMQDIYVVDNKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS---HNDYSII 140 (374)
T ss_pred HHhhcCCCcEEEEEECCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE---cCCeEEE
Confidence 334455667788898887777777653 235579999999999999999988 4699999999999985 5678999
Q ss_pred EEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCC-eEEE
Q psy9964 211 KFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEF-SSLV 289 (595)
Q Consensus 211 ~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~-~~~~ 289 (595)
++.++ ++++|+||||||++|.||+.++.+.....| ..++.+.++... +.....+++|.+.|+++++|++++. ..++
T Consensus 141 ~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~-~~~~~~~~~~~~~g~~~~lPl~~~~~~~~v 217 (374)
T PRK06617 141 KFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEK-PHENCAMEHFLPLGPFALLPLKDQYASSVI 217 (374)
T ss_pred EEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccC-CCCCEEEEEecCCCCEEEeECCCCCeEEEE
Confidence 99877 899999999999999999999877666667 567777765443 3444567788889999999999875 6788
Q ss_pred EecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccc
Q psy9964 290 WATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGF 369 (595)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (595)
|..+.+........+.+.+.+.+...+.. .++ .+. .......||+..
T Consensus 218 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--------------~i~--~~~~~~~~~l~~ 264 (374)
T PRK06617 218 WSTSSDQAALIVNLPVEEVRFLTQRNAGN-----------------SLG--------------KIT--IDSEISSFPLKA 264 (374)
T ss_pred EeCCHHHHHHHHcCCHHHHHHHHHHhhch-----------------hcC--------------cee--eccceeEEEeee
Confidence 98876654444444444443332221110 001 010 112355678877
Q ss_pred cccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHH
Q psy9964 370 GHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLM 449 (595)
Q Consensus 370 ~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~ 449 (595)
..+++|++|||+|+|||||.|+|++|||+|+||+||.+|+++|.. ..+|+.|+++|++++..++..++.+
T Consensus 265 ~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----------~~~L~~Ye~~R~~~~~~~~~~t~~l 334 (374)
T PRK06617 265 RIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----------NGTLQEYQKLRQEDNFIMYKLTDEL 334 (374)
T ss_pred eeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC----------cchHHHHHHHHhHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999831 2489999999999999999999999
Q ss_pred HHhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q psy9964 450 YRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRT 488 (595)
Q Consensus 450 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 488 (595)
.++|+..+++...+|+.++..++++|++|+.+++.+||+
T Consensus 335 ~~~f~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 373 (374)
T PRK06617 335 NNIFSNYSKNLRCLRQIGFKVINNFKPIKNLITSYAMGK 373 (374)
T ss_pred HHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998874
No 5
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=8.5e-40 Score=338.53 Aligned_cols=316 Identities=31% Similarity=0.501 Sum_probs=256.2
Q ss_pred ccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEcC
Q psy9964 136 VMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFES 214 (595)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~d 214 (595)
..+...+.+|+.++...+.|+......+..|+.++|..|++.|++.+.+ .|++++++++|+++++ +++.++|+++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~---~~~~~~v~~~~ 151 (405)
T PRK08850 75 AAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAV---GESEAWLTLDN 151 (405)
T ss_pred CCcccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe---eCCeEEEEECC
Confidence 4556678899876555666766543345679999999999999999987 6899999999999985 56788999999
Q ss_pred CcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCC-CeEEEEecC
Q psy9964 215 GESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDE-FSSLVWATT 293 (595)
Q Consensus 215 G~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~-~~~~~~~~~ 293 (595)
|++++||+||||||++|.||+.++++.....|...++.+.+..+. +.....+++|.++++++++|+.++ ..+++|..+
T Consensus 152 g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~ 230 (405)
T PRK08850 152 GQALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD-PHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTE 230 (405)
T ss_pred CCEEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC-CCCCEEEEEEcCCCceEEEECCCCCeEEEEEECC
Confidence 999999999999999999999999887777787788888776544 344566778889999999999864 568889988
Q ss_pred HhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccc
Q psy9964 294 PENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSV 373 (595)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (595)
..........+.+++.+.+.+.+... +. .+ .+ ......||+....++
T Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~--------------~~-~~-~~~~~~~pl~~~~~~ 277 (405)
T PRK08850 231 PLRAEALLAMSDEQFNKALTAEFDNR-----------------LG--------------LC-EV-VGERQAFPLKMRYAR 277 (405)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh-----------------hC--------------cE-EE-cccccEEecceeecc
Confidence 77665555556666666554433210 00 00 00 112345777666788
Q ss_pred cccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhh
Q psy9964 374 RYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVY 453 (595)
Q Consensus 374 ~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~ 453 (595)
+|+++||+|+|||||+|+|+.|||+|+||+||..|+++|......+.+.....+|+.|+++|++++..++..++.+.++|
T Consensus 278 ~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~ 357 (405)
T PRK08850 278 DFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLF 357 (405)
T ss_pred ccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987765554433578999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q psy9964 454 RSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRT 488 (595)
Q Consensus 454 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 488 (595)
+.++++...+|+.++..++.+|++++.+++.++|.
T Consensus 358 ~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 392 (405)
T PRK08850 358 SGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALGL 392 (405)
T ss_pred CCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999874
No 6
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=5.6e-39 Score=331.38 Aligned_cols=314 Identities=30% Similarity=0.500 Sum_probs=253.8
Q ss_pred cccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCc
Q psy9964 137 MIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGE 216 (595)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~ 216 (595)
.+..++.+|+.++...+.|+.........+|.++|..|.+.|.+.+.+.|++++++++|++++. ++++++|++++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~---~~~~v~v~~~~g~ 154 (392)
T PRK08773 78 QPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQ---DADRVRLRLDDGR 154 (392)
T ss_pred CcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEe---cCCeEEEEECCCC
Confidence 3445677888765556677655433456789999999999999999889999999999999985 5667889999999
Q ss_pred EEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhh
Q psy9964 217 SIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPEN 296 (595)
Q Consensus 217 ~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~ 296 (595)
++++|+||+|||.+|.+|+.++++.....|.+.++...++... +.....+..|.++++++++|.+++..+++|.++...
T Consensus 155 ~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~ 233 (392)
T PRK08773 155 RLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEH-PHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAE 233 (392)
T ss_pred EEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccC-CCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHH
Confidence 9999999999999999999998876666677777777665543 334567777889999999999999889999988766
Q ss_pred HHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecccccccccc
Q psy9964 297 AKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYI 376 (595)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (595)
.......+.+.+.+++.+.+... +.. +.. ......||+....+++|+
T Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~-----------------~~~--------------~~~--~~~~~~~~l~~~~~~~~~ 280 (392)
T PRK08773 234 AERVLALDEAAFSRELTQAFAAR-----------------LGE--------------VRV--ASPRTAFPLRRQLVQQYV 280 (392)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhh-----------------hcC--------------eEe--cCCccEeechhhhhhhhc
Confidence 55555555556655554433221 110 000 112335777666789999
Q ss_pred CCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCC
Q psy9964 377 GPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSS 456 (595)
Q Consensus 377 ~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~ 456 (595)
.|||+|+|||||.|+|++|||+|+||+||..|+++|.++...+.++....+|+.|+++|+++...+...++.+.++|+.+
T Consensus 281 ~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~ 360 (392)
T PRK08773 281 SGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSND 360 (392)
T ss_pred CCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988766555555678999999999999998888889999999999
Q ss_pred chHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy9964 457 LTPVKILGNLGFQLVNAVRPIKSILCDIFMR 487 (595)
Q Consensus 457 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 487 (595)
+++...+|+.++..++++|++|+.+++.++|
T Consensus 361 ~~~~~~~r~~~l~~~~~~~~~k~~~~~~~~g 391 (392)
T PRK08773 361 EMHLTLLRGSVLGLAGKLPPLVDALWKRASG 391 (392)
T ss_pred ChHHHHHHHHHHHHHhhCHHHHHHHHHHHcC
Confidence 9999999999999999999999999998876
No 7
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=8e-39 Score=328.62 Aligned_cols=306 Identities=33% Similarity=0.590 Sum_probs=241.7
Q ss_pred ccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEcCCc
Q psy9964 138 IKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFESGE 216 (595)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~ 216 (595)
+...+++|+... ....|+.........||.++|..|+++|++++.+ .+++++++++|++++. ++++++|+++||+
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~---~~~~~~v~~~~g~ 152 (384)
T PRK08849 77 PYKRLETWEHPE-CRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEF---SAEGNRVTLESGA 152 (384)
T ss_pred ccceEEEEeCCC-ceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEE---cCCeEEEEECCCC
Confidence 334556666432 2345554332335578999999999999999876 7899999999999986 5678999999999
Q ss_pred EEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhh
Q psy9964 217 SIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPEN 296 (595)
Q Consensus 217 ~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~ 296 (595)
++++|+||||||++|.||+.+++......|...++...+.... +.....+.+|.+.|...++|++++..+++|+.++..
T Consensus 153 ~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~~~~ 231 (384)
T PRK08849 153 EIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQ-PQQDITWQQFTPSGPRSFLPLCGNQGSLVWYDSPKR 231 (384)
T ss_pred EEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCC-CCCCEEEEEeCCCCCEEEeEcCCCceEEEEECCHHH
Confidence 9999999999999999999998877777777666665555433 344567778888888888999887777888876554
Q ss_pred HHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecccccccccc
Q psy9964 297 AKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYI 376 (595)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (595)
.......+.+.+.+.+.+.++.. +. .+...++..||+....+++|+
T Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~-----------------~~-----------------~~~~~~~~~~~l~~~~~~~~~ 277 (384)
T PRK08849 232 IKQLSAMNPEQLRSEILRHFPAE-----------------LG-----------------EIKVLQHGSFPLTRRHAQQYV 277 (384)
T ss_pred HHHHHcCCHHHHHHHHHHHhhhh-----------------hC-----------------cEEeccceEeeccccccchhc
Confidence 43444445555555554443211 01 111234567888777899999
Q ss_pred CCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCC
Q psy9964 377 GPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSS 456 (595)
Q Consensus 377 ~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~ 456 (595)
.|||+|+|||||+|+|++|||+|+||+||..|+++|... +.. .+++|+.|+++|++++..++..++.+.++|+..
T Consensus 278 ~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---~~~--~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~ 352 (384)
T PRK08849 278 KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---GVL--NDASFARYERRRRPDNLLMQTGMDLFYKTFSNS 352 (384)
T ss_pred cCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---CCC--cHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998532 222 578999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy9964 457 LTPVKILGNLGFQLVNAVRPIKSILCDIFMR 487 (595)
Q Consensus 457 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 487 (595)
+++...+|+.++..++++|++|+.+++.++|
T Consensus 353 ~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 383 (384)
T PRK08849 353 LTPLKFVRNAALKLAENSGPLKTQVLKYALG 383 (384)
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHcC
Confidence 8899999999999999999999999998876
No 8
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=2.7e-38 Score=324.33 Aligned_cols=320 Identities=29% Similarity=0.445 Sum_probs=263.0
Q ss_pred HHhhhcccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCce
Q psy9964 130 IQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNV 208 (595)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v 208 (595)
+++.....+......++.++...+.|+.........+++++|.+|.+.|.+++.+ .+++++++++|+.+++ +++.|
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~---~~~~v 138 (387)
T COG0654 62 DRLEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ---DGDGV 138 (387)
T ss_pred hhhhhccCCceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE---cCCce
Confidence 4455545544444455554446778887764457789999999999999999988 6699999999999997 56788
Q ss_pred EEEEc-CCcEEEecEEEEecCCCchhhhhcC-CCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCe
Q psy9964 209 KIKFE-SGESIECKLLLGTDGARSQVRNAMN-VQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFS 286 (595)
Q Consensus 209 ~v~~~-dG~~~~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~ 286 (595)
++++. ||++++|||||||||.||.||+.++ .......|...++...+..+ .+.....+.+|.+.+.+.++|+++...
T Consensus 139 ~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~ 217 (387)
T COG0654 139 TVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE-EPHEGRAGERFTHAGPFALLPLPDNRS 217 (387)
T ss_pred EEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC-CCCCCeEEEEecCCCceEEEecCCCce
Confidence 89998 9999999999999999999999999 44444578888888777765 356677888899999999999998889
Q ss_pred EEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeee
Q psy9964 287 SLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFP 366 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (595)
.++|+.+..........+.+.+...+.+.++.... + ...........||
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------~----------------~~~~~~~~~~~~p 266 (387)
T COG0654 218 SVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP---------------L----------------GRVTLVSSRSAFP 266 (387)
T ss_pred eEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc---------------c----------------ceEEEcccccccc
Confidence 99999998887777778888777776665443100 0 0112234566788
Q ss_pred ccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHH
Q psy9964 367 LGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSI 446 (595)
Q Consensus 367 ~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~ 446 (595)
+....+.+|..+||+|+|||||.|+|++|||+|+||+||..|+++|.++...+.+ ..+|+.|+++|++++..++..+
T Consensus 267 l~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~---~~~L~~Y~~~R~~~~~~~~~~s 343 (387)
T COG0654 267 LSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYEARRRPRAEAIQKLS 343 (387)
T ss_pred ccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc---HHHHHHHHHhhhhHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999887654332 6899999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy9964 447 DLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMR 487 (595)
Q Consensus 447 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 487 (595)
+.+.+.|+.+.++...+|+..++.+...++.+..+.+...+
T Consensus 344 ~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 384 (387)
T COG0654 344 RALGRLFSADGPFARFLRNLGLRLLDRLPPLREALARLAAG 384 (387)
T ss_pred HHHhhhhccCCcHHHHHHHHHHHhhccCccHHHHHHHHhcc
Confidence 99999999999999999999999999999888888776544
No 9
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=2.6e-37 Score=319.22 Aligned_cols=309 Identities=31% Similarity=0.554 Sum_probs=243.2
Q ss_pred CcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEcCCcEE
Q psy9964 140 GTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFESGESI 218 (595)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~ 218 (595)
..+..++..+ ..+.|+......+..+|.++|..|++.|.+.+.+ +|++++++++|++++. +++++.|++++|+++
T Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~g~~~ 156 (391)
T PRK08020 81 RRLETWEWET-AHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQR---DDDGWELTLADGEEI 156 (391)
T ss_pred ceEEEEeCCC-CeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE---cCCeEEEEECCCCEE
Confidence 3444444322 2344543332335678999999999999999877 5999999999999985 456788999999999
Q ss_pred EecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhhHH
Q psy9964 219 ECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAK 298 (595)
Q Consensus 219 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 298 (595)
++|+||+|||++|.||+.++++.....|...++...+..+. +.....+..+.+.++..++|+.++..+++|...+....
T Consensus 157 ~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~ 235 (391)
T PRK08020 157 QAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCEN-PPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIR 235 (391)
T ss_pred EeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecC-CCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHH
Confidence 99999999999999999998877777787777777776554 33456677788888899999988888888877655444
Q ss_pred HHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCC
Q psy9964 299 ALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGP 378 (595)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 378 (595)
.+...+.+.+.+.+...++. .+. .+.......||+....+++|..+
T Consensus 236 ~~~~~~~~~~~~~l~~~~~~-----------------~~~-----------------~~~~~~~~~~pl~~~~~~~~~~~ 281 (391)
T PRK08020 236 QLQAMSMAQLQQEIAAHFPA-----------------RLG-----------------AVTPVAAGAFPLTRRHALQYVQP 281 (391)
T ss_pred HHHCCCHHHHHHHHHHHhhh-----------------hcc-----------------ceEeccccEeecceeehhhhccC
Confidence 44444555554444332211 000 01111344577766678899999
Q ss_pred CEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCch
Q psy9964 379 GCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLT 458 (595)
Q Consensus 379 rvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~ 458 (595)
|++|+|||||.|+|+.|||+|+||+||..|+++|.+....+.++....+|+.|+++|+++...++..++.+.++|+.+.+
T Consensus 282 rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~ 361 (391)
T PRK08020 282 GLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLP 361 (391)
T ss_pred cEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 99999999999999999999999999999999998776555554467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy9964 459 PVKILGNLGFQLVNAVRPIKSILCDIFMR 487 (595)
Q Consensus 459 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 487 (595)
+.+.+|+.++..++++|++|+.+++.++|
T Consensus 362 ~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 390 (391)
T PRK08020 362 PLRFARNLGLMAAQRAGVLKRQALKYALG 390 (391)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHcC
Confidence 99999999999999999999999998876
No 10
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=4e-37 Score=317.33 Aligned_cols=306 Identities=22% Similarity=0.396 Sum_probs=243.2
Q ss_pred ccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC--
Q psy9964 138 IKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG-- 215 (595)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG-- 215 (595)
+...+++++........+.......+..||.++|..|++.|.+.+.+.+++++++++++++++ +.++|++++.+|
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~---~~~~v~v~~~~~~g 157 (398)
T PRK06996 81 PIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQ---DADGVTLALGTPQG 157 (398)
T ss_pred cccEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeee---cCCeEEEEECCCCc
Confidence 344666775443334555554433455799999999999999999988899999999999985 678899999865
Q ss_pred -cEEEecEEEEecCC-CchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCC---eEEEE
Q psy9964 216 -ESIECKLLLGTDGA-RSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEF---SSLVW 290 (595)
Q Consensus 216 -~~~~adlvVgADG~-~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~---~~~~~ 290 (595)
+++++|+||||||. +|.+|+.++.......|.+.++++.++...+ .....++.+.+.|++.++|++++. .+++|
T Consensus 158 ~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~ 236 (398)
T PRK06996 158 ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAP-RPGWAWERFTHEGPLALLPLGGPRQADYALVW 236 (398)
T ss_pred ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCC-CCCEEEEEecCCCCeEEeECCCCCCCcEEEEE
Confidence 58999999999997 6889999988877788888888888876543 334566677889999999998654 67888
Q ss_pred ecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecccc
Q psy9964 291 ATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFG 370 (595)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (595)
..+++........+.+.+.+.+.+.+.... . .+... .....|++...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------~--------------~~~~~--~~~~~~~l~~~ 283 (398)
T PRK06996 237 CCAPDEAARRAALPDDAFLAELGAAFGTRM-----------------G--------------RFTRI--AGRHAFPLGLN 283 (398)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHhcccc-----------------C--------------ceEEe--cceEEEeeecc
Confidence 887766555555666666666655432210 0 01111 11235777777
Q ss_pred ccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHH
Q psy9964 371 HSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMY 450 (595)
Q Consensus 371 ~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~ 450 (595)
.+++|+.|||+|+|||||+|+|++|||+|+||+||..|+++|... + . ...+|+.|+++|++++..++..++.+.
T Consensus 284 ~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~---~-~--~~~~L~~Y~~~R~~~~~~~~~~s~~l~ 357 (398)
T PRK06996 284 AARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH---G-A--TPLALATFAARRALDRRVTIGATDLLP 357 (398)
T ss_pred cccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc---C-C--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999642 2 2 467899999999999999999999999
Q ss_pred HhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHH
Q psy9964 451 RVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFM 486 (595)
Q Consensus 451 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 486 (595)
++|+.++++...+|+.++..++.+|++|+.+++.+|
T Consensus 358 ~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 358 RLFTVDSRPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred HHHcCCchHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 999999999999999999999999999999999887
No 11
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=5.1e-37 Score=319.77 Aligned_cols=326 Identities=29% Similarity=0.488 Sum_probs=246.6
Q ss_pred HHHHHhhhcccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCC
Q psy9964 127 ILKIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPL 205 (595)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~ 205 (595)
|+.+++.+.+.+...+.+++..+.....|+.........++.+.+..|.+.|++.+.+ .+++++++++|+++++ ++
T Consensus 76 Gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~---~~ 152 (415)
T PRK07364 76 GVWEKILPQIGKFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEY---QQ 152 (415)
T ss_pred ChhhhhHhhcCCccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe---cC
Confidence 3445555666666777888776655666665432234567777766899999999877 6899999999999985 55
Q ss_pred CceEEEEcCC---cEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCC
Q psy9964 206 NNVKIKFESG---ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLS 282 (595)
Q Consensus 206 ~~v~v~~~dG---~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~ 282 (595)
++++|+++++ .+++||+||||||++|.||+.+++......|...++...+.... +.....+..|.+.++++++|++
T Consensus 153 ~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~ 231 (415)
T PRK07364 153 DAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEA-PHNDIAYERFWPSGPFAILPLP 231 (415)
T ss_pred CeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccC-CCCCEEEEEecCCCCeEEeECC
Confidence 6788888743 36999999999999999999998876666665555655555433 2233444556678899999999
Q ss_pred CCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccc
Q psy9964 283 DEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSR 362 (595)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (595)
++..+++|..+.+........+.+++.+.+.+.+... +. .+.. ....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~--------------~~~~--~~~~ 278 (415)
T PRK07364 232 GNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYGDQ-----------------LG--------------KLEL--LGDR 278 (415)
T ss_pred CCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhh-----------------hc--------------Ccee--cCCC
Confidence 8888888887665444444445455555444332210 00 0000 0123
Q ss_pred eeeeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchH
Q psy9964 363 AAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPV 442 (595)
Q Consensus 363 ~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~ 442 (595)
..+|+....+++|+.||++|+|||||+|+|++|||+|+||+||..|+++|......+.+.....+|+.|++.|++++..+
T Consensus 279 ~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~ 358 (415)
T PRK07364 279 FLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLI 358 (415)
T ss_pred ceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 34666666678999999999999999999999999999999999999999876544444334589999999999999999
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHHHh
Q psy9964 443 MLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRTS 489 (595)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (595)
+..++.+.++|..++++...+|+.+++.++.+|++++.+++.++|..
T Consensus 359 ~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~ 405 (415)
T PRK07364 359 LGFTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRLALRLMTGLK 405 (415)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999864
No 12
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=7.5e-37 Score=317.40 Aligned_cols=322 Identities=30% Similarity=0.520 Sum_probs=245.9
Q ss_pred HhhhcccccCcEEEEecCCCc-----ceEEcCCccCccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCC
Q psy9964 131 QILKYVMIKGTSKVWGHSSDD-----LLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPL 205 (595)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~ 205 (595)
.+.+.+.+...+.+++..+.. ...|+.......++++.++|..|++.|.+.+.+.|++++++++|+++++ ++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~---~~ 141 (403)
T PRK07333 65 EIAPEAQPITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFET---RD 141 (403)
T ss_pred hhhhhcCcccEEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEE---cC
Confidence 344445555667777654321 2334332212345678999999999999999888999999999999985 56
Q ss_pred CceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCC
Q psy9964 206 NNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEF 285 (595)
Q Consensus 206 ~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~ 285 (595)
+.+.|++++|+++++|+||+|||.+|.+|+.+++......|...++...+.... +.....+..+.+.++++++|++++.
T Consensus 142 ~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~Pl~~~~ 220 (403)
T PRK07333 142 EGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER-PHGGRAEEHFLPAGPFAILPLKGNR 220 (403)
T ss_pred CEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC-CCCCEEEEEeCCCCceEEeECCCCC
Confidence 788999999999999999999999999999998876666777777766665443 2334556677788999999999998
Q ss_pred eEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceee
Q psy9964 286 SSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAF 365 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (595)
.+++|..+..........+.+.+.+.+.+.+... +. .+.. ......|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~--------------~~~~--~~~~~~~ 267 (403)
T PRK07333 221 SSLVWTERTADAERLVALDDLVFEAELEQRFGHR-----------------LG--------------ELKV--LGKRRAF 267 (403)
T ss_pred eEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhh-----------------cC--------------ceEe--ccCccEe
Confidence 8888877655444333333334444443322110 00 0000 1122346
Q ss_pred eccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHH
Q psy9964 366 PLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLS 445 (595)
Q Consensus 366 ~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~ 445 (595)
++....+++|+.|||+|+|||||.++|++|||+|+||+||..|+++|......+.+...+.+|+.|+++|++++..++..
T Consensus 268 ~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~ 347 (403)
T PRK07333 268 PLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVT 347 (403)
T ss_pred echhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHH
Confidence 66666788999999999999999999999999999999999999999877654333236889999999999999999999
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHHHh
Q psy9964 446 IDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRTS 489 (595)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (595)
++.+.++|..++++...+|+.++..++.+|++++.+++.++|..
T Consensus 348 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~ 391 (403)
T PRK07333 348 TDVLNRLFSNDSTLLRSVRDIGLGLVDRLPKLKSFFIRQAAGLT 391 (403)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999999853
No 13
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.1e-36 Score=314.31 Aligned_cols=314 Identities=25% Similarity=0.418 Sum_probs=247.0
Q ss_pred hhcccccCcEEEEecCCCcc----eEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCc
Q psy9964 133 LKYVMIKGTSKVWGHSSDDL----LEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNN 207 (595)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~ 207 (595)
.+...+...+++++.++... ..|+.......+++|.++|..|.+.|.+.+.+ .++. +++++|++++. .+++
T Consensus 68 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~---~~~~ 143 (388)
T PRK07494 68 APHAAPLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRP---REDE 143 (388)
T ss_pred HhhcceeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEE---cCCe
Confidence 34444556778887765432 34443332345678999999999999999987 4565 89999999985 5678
Q ss_pred eEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeE
Q psy9964 208 VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSS 287 (595)
Q Consensus 208 v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 287 (595)
++|++++|+++++|+||+|||.+|.+|+.++++.....|.+.++...+.... +.....+..+.+.|+++++|++++..+
T Consensus 144 ~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~g~~~~~Pl~~~~~~ 222 (388)
T PRK07494 144 VTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSR-PHQNVSTEFHTEGGPFTQVPLPGRRSS 222 (388)
T ss_pred EEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccC-CCCCEEEEEeCCCCcEEEEECCCCcEE
Confidence 8999999999999999999999999999999887777787778777766443 333445666778899999999988888
Q ss_pred EEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeec
Q psy9964 288 LVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPL 367 (595)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (595)
++|....+........+.+.+.+.+.+.+ ..+++.+ . .......||+
T Consensus 223 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~~~--------------~--~~~~~~~~~l 269 (388)
T PRK07494 223 LVWVVRPAEAERLLALSDAALSAAIEERM-----------------QSMLGKL--------------T--LEPGRQAWPL 269 (388)
T ss_pred EEEECCHHHHHHHHcCCHHHHHHHHHHHH-----------------hhhcCCe--------------E--EccCCcEeec
Confidence 99988776655555555555555443322 1122211 0 1123456788
Q ss_pred cccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHH
Q psy9964 368 GFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSID 447 (595)
Q Consensus 368 ~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~ 447 (595)
.....++|..+||+|+|||||.++|++|||+|+||+||..|+++|.... .+.....+|+.|+++|++++..++..++
T Consensus 270 ~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~---~~~~~~~~L~~Y~~~R~~~~~~~~~~~~ 346 (388)
T PRK07494 270 SGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRP---EDPGSAAVLAAYDRARRPDILSRTASVD 346 (388)
T ss_pred hHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777889999999999999999999999999999999999999997632 2222578999999999999999999999
Q ss_pred HHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy9964 448 LMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMR 487 (595)
Q Consensus 448 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 487 (595)
.+.++|....++...+|+.++..++.+|++|+.+++..||
T Consensus 347 ~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~ 386 (388)
T PRK07494 347 LLNRSLLSDFLPVQDLRAAGLHLLYSFGPLRRLFMREGLG 386 (388)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998876
No 14
>KOG3855|consensus
Probab=100.00 E-value=1.3e-37 Score=295.34 Aligned_cols=351 Identities=38% Similarity=0.607 Sum_probs=306.5
Q ss_pred hcccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHH--HHhc-CCceEEeCCeEeEEecC-----CCCC
Q psy9964 134 KYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTK--KLNT-LNIDIVYQKKVAHYELP-----EQPL 205 (595)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~--~~~~-~gv~i~~~~~v~~v~~~-----~~~~ 205 (595)
..+.+..++.+||......+.|+.+. ...+.|+.++...++..|+. ...+ .+++|....++.++... .+..
T Consensus 113 ~R~~~~~~~~v~Ds~s~a~I~~~~d~-~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~ 191 (481)
T KOG3855|consen 113 DRYQKFSRMLVWDSCSAALILFDHDN-VGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG 191 (481)
T ss_pred hccccccceeeecccchhhhhhcccc-ccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence 44556678999999999999999887 44577999999999999995 3333 89999999999988763 1234
Q ss_pred CceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEecc-CCCCceEEEEeCCCCcEEEeeCCCC
Q psy9964 206 NNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKIST-SPPNRTAWQRFTPSGTVALLPLSDE 284 (595)
Q Consensus 206 ~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~p~~~~ 284 (595)
....+++.||..+..||||||||.||.||+..+++...+.|.+.+++++..+.. ......+|++|.|.|+++++|++++
T Consensus 192 ~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d~ 271 (481)
T KOG3855|consen 192 MWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSDT 271 (481)
T ss_pred ceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeecccccc
Confidence 567889999999999999999999999999999999999999999999999887 5667889999999999999999999
Q ss_pred CeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhh-------chhhhccccCCCcccCCCcccee
Q psy9964 285 FSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTH-------NVLEFFNLSTGNEQVVPPRVMSV 357 (595)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 357 (595)
..+++|...++....+..++++.|.+.+...|+.+.+..+...+....+. .++....+.. ..+.|+.+.++
T Consensus 272 ~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~--~~q~pp~V~~v 349 (481)
T KOG3855|consen 272 LSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLA--NQQYPPSVFEV 349 (481)
T ss_pred cccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCccc--ccccCCeEEEe
Confidence 99999999999999999999999999999999887766555544333222 2233222211 12778899999
Q ss_pred ccccceeeeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhh
Q psy9964 358 EEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQR 437 (595)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~ 437 (595)
....+..||+...++..|..+|+.|+|||||.++|..|||.|+++.|...|...|.++..+|.+.++..-|+.|+.+|.+
T Consensus 350 ~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~ 429 (481)
T KOG3855|consen 350 GDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQ 429 (481)
T ss_pred cccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred ccchHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy9964 438 ENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMR 487 (595)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 487 (595)
....+....+.+.++|+.+.++...+|.+++...+.++++|+.++..+++
T Consensus 430 ~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~~~ 479 (481)
T KOG3855|consen 430 HNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTASK 479 (481)
T ss_pred hcchHHHHHHHHHHHHhccCCcEEEEeccchhhccccccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998765
No 15
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=7.7e-36 Score=308.49 Aligned_cols=313 Identities=24% Similarity=0.398 Sum_probs=237.9
Q ss_pred cCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEcCCcE
Q psy9964 139 KGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFESGES 217 (595)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~ 217 (595)
...+.+++......+.|+.........+|.++|..|++.|++.+.+ .|++|+++++|++++. .++.+.|++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~---~~~~~~v~~~~g~~ 153 (392)
T PRK09126 77 LRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT---DDDGAQVTLANGRR 153 (392)
T ss_pred cceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE---cCCeEEEEEcCCCE
Confidence 3455666655444555654332335678999999999999999865 7999999999999985 45678899999999
Q ss_pred EEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhhH
Q psy9964 218 IECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENA 297 (595)
Q Consensus 218 ~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~ 297 (595)
+++|+||||||.+|.+|+.++++.....+....+...+.... +.....+.++.++++++++|..++..++++..+....
T Consensus 154 ~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 232 (392)
T PRK09126 154 LTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL-PHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQI 232 (392)
T ss_pred EEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccC-CCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHH
Confidence 999999999999999999998766555555555444443322 2334455666677789999999988888888776544
Q ss_pred HHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccC
Q psy9964 298 KALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIG 377 (595)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (595)
......+.+.+.+.+...+.. .+.. +. .......+|+....+++|+.
T Consensus 233 ~~~~~~~~~~~~~~l~~~~~~-----------------~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~ 279 (392)
T PRK09126 233 EALLALDPEAFAAEVTARFKG-----------------RLGA--------------MR--LVSSRHAYPLVAVYAHRFVA 279 (392)
T ss_pred HHHHcCCHHHHHHHHHHHHhh-----------------hccC--------------eE--EcCCCcEeechHHHHHHHhh
Confidence 333344455554444332211 0000 00 01223456666566789999
Q ss_pred CCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCc
Q psy9964 378 PGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSL 457 (595)
Q Consensus 378 grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
+||+|+|||||+|+|++|||+|+||+||..|+++|......+.+...+++|+.|+++|++++..++..++.+.++++.++
T Consensus 280 ~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~ 359 (392)
T PRK09126 280 KRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDDR 359 (392)
T ss_pred cceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999887654433335789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q psy9964 458 TPVKILGNLGFQLVNAVRPIKSILCDIFMRT 488 (595)
Q Consensus 458 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 488 (595)
++...+|+.+++.+.++|.+++.+++.+.|.
T Consensus 360 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 390 (392)
T PRK09126 360 PPARLLRRAVLRAANRFPPLKQAIAKQLTGR 390 (392)
T ss_pred hHHHHHHHHHHHHHhhChHHHHHHHHHHhcC
Confidence 9999999999999999999999999887653
No 16
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=1.1e-35 Score=307.23 Aligned_cols=321 Identities=34% Similarity=0.608 Sum_probs=245.2
Q ss_pred HHhhh-cccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcCC-ceEEeCCeEeEEecCCCCCCc
Q psy9964 130 IQILK-YVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN-IDIVYQKKVAHYELPEQPLNN 207 (595)
Q Consensus 130 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g-v~i~~~~~v~~v~~~~~~~~~ 207 (595)
+++.+ .+.+...+.+++.++...+.++......+..++.++|..|++.|++.+.+.+ ++|+++++|++++. .+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~---~~~~ 139 (385)
T TIGR01988 63 DKIEPDRAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPR---HSDH 139 (385)
T ss_pred hhhhhhcCCCceEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe---cCCe
Confidence 33444 4555667778887665555665432223456899999999999999998865 99999999999986 4678
Q ss_pred eEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeE
Q psy9964 208 VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSS 287 (595)
Q Consensus 208 v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 287 (595)
++|+++||+++++|+||+|||.+|.+|+.++++.....|...++...+....+ .....+..+.+++.++++|++++..+
T Consensus 140 ~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~ 218 (385)
T TIGR01988 140 VELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERP-HQGTAWERFTPTGPLALLPLPDNRSS 218 (385)
T ss_pred eEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCC-CCCEEEEEecCCCCEEEeECCCCCeE
Confidence 89999999999999999999999999999987665556655666655554432 23344555668888999999999888
Q ss_pred EEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeec
Q psy9964 288 LVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPL 367 (595)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (595)
++|..+..........+.+++.+.+.+.+... +. .+. .......+|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------------~~~--~~~~~~~~~~ 265 (385)
T TIGR01988 219 LVWTLPPEEAERLLALSDEEFLAELQRAFGSR-----------------LG--------------AIT--LVGERHAFPL 265 (385)
T ss_pred EEEECCHHHHHHHHcCCHHHHHHHHHHHHhhh-----------------cC--------------ceE--eccCcceeec
Confidence 88887765433333344455554444322110 00 000 0123345666
Q ss_pred cccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHH
Q psy9964 368 GFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSID 447 (595)
Q Consensus 368 ~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~ 447 (595)
....+++|+.+||+|+|||||+|+|++|||+|+||+||..|+++|......+.+...+.+|+.|+++|++++..++..++
T Consensus 266 ~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~ 345 (385)
T TIGR01988 266 SLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATD 345 (385)
T ss_pred hhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667889999999999999999999999999999999999999987655443323478999999999999999999999
Q ss_pred HHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy9964 448 LMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMR 487 (595)
Q Consensus 448 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 487 (595)
.+.+++..+++....+|+.+++.+..+|.+++.+.+.+++
T Consensus 346 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 385 (385)
T TIGR01988 346 GLNRLFSNDFPPLRLLRNLGLRLLNLLPPLKNFIARYAMG 385 (385)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999887764
No 17
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=3.2e-35 Score=302.94 Aligned_cols=312 Identities=25% Similarity=0.427 Sum_probs=234.2
Q ss_pred cccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEc
Q psy9964 135 YVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFE 213 (595)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~ 213 (595)
.+.+...+.+++..+.....++......+..+|.++|..|++.|.+.+.+ .|++++++++|++++. ++++++|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~---~~~~~~v~~~ 144 (382)
T TIGR01984 68 FATPILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIR---NQDYVRVTLD 144 (382)
T ss_pred hcCccceEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE---cCCeEEEEEC
Confidence 33344455555543333344443322234567999999999999999988 5999999999999985 5678999999
Q ss_pred CCcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCC-CeEEEEec
Q psy9964 214 SGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDE-FSSLVWAT 292 (595)
Q Consensus 214 dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~-~~~~~~~~ 292 (595)
+|++++||+||||||.+|.+|+.++++.....|.+..+...+....+ .....+..+.+++.++++|..++ ..+++|..
T Consensus 145 ~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 223 (382)
T TIGR01984 145 NGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQP-HQGCAFERFTPHGPLALLPLKDNYRSSLVWCL 223 (382)
T ss_pred CCCEEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCC-CCCEEEEeeCCCCCeEECcCCCCCCEEEEEEC
Confidence 99999999999999999999999987665556655666655554332 23344556677888999999888 77788887
Q ss_pred CHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecccccc
Q psy9964 293 TPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHS 372 (595)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (595)
+..........+.+.+.+.+.+.+.. .+.. +.. ......+++.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~--------------~~~--~~~~~~~~~~~~~~ 270 (382)
T TIGR01984 224 PSKQADTIANLPDAEFLAELQQAFGW-----------------RLGK--------------ITQ--VGERKTYPLKLRIA 270 (382)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHhh-----------------hccC--------------eEE--cCCccEeecchhhh
Confidence 76544334444444454444332211 0000 000 11234566666678
Q ss_pred ccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHh
Q psy9964 373 VRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRV 452 (595)
Q Consensus 373 ~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~ 452 (595)
++|..|||+|+|||||+|+|++|||+|+||+||..|+++|.... . +...+++|+.|+++|++++..++..+..+.++
T Consensus 271 ~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~-~--~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~ 347 (382)
T TIGR01984 271 ETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDAR-I--DLGTYALLQEYLRRRQFDQFITIGLTDGLNRL 347 (382)
T ss_pred hheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhc-c--CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999997653 1 22257899999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHhhccChhHHHHHHHHHH
Q psy9964 453 YRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFM 486 (595)
Q Consensus 453 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 486 (595)
|..+++....+|+.+++.+.++|.+++.+++..+
T Consensus 348 ~~~~~~~~~~~r~~~~~~~~~~p~~~~~~~~~~~ 381 (382)
T TIGR01984 348 FSNHIPLLRALRNLGLLALENFPPLKKRLARQAM 381 (382)
T ss_pred HcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 9999988999999999999999999999887654
No 18
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.6e-34 Score=299.20 Aligned_cols=289 Identities=28% Similarity=0.498 Sum_probs=226.1
Q ss_pred cccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCC
Q psy9964 163 DRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQY 241 (595)
Q Consensus 163 ~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~ 241 (595)
+..++.++|..|++.|.+.+.+ .|++++++++|++++. .++++.|++++|+++++|+||+|||.+|.+|+.+++..
T Consensus 103 ~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~---~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~ 179 (395)
T PRK05732 103 PALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVER---TQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDW 179 (395)
T ss_pred CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE---cCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCc
Confidence 4457899999999999999877 6899999999999985 56778899999999999999999999999999998776
Q ss_pred cccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcc
Q psy9964 242 SNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAE 321 (595)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (595)
....+....+...+.... ......+..+.++++++++|.+++...++|..+.+........+.+.+.+.+.+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 255 (395)
T PRK05732 180 QQHPYEQVAVIANVTTSE-AHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGW--- 255 (395)
T ss_pred cceecCCEEEEEEEEecC-CCCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 555565556555555433 2233445566788889999999999888898876654444444444444444332210
Q ss_pred hhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccchhhhhc
Q psy9964 322 LNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLG 401 (595)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~A 401 (595)
.+. .+. .......|++.....++|..|||+|+|||||.|+|++|||+|+|
T Consensus 256 --------------~~~--------------~~~--~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~a 305 (395)
T PRK05732 256 --------------RLG--------------RIT--HAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLG 305 (395)
T ss_pred --------------hhc--------------cee--ecCCcceecccccchhhhccCcEEEEeecccccCCccccccchH
Confidence 000 000 01123355666666788999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHH
Q psy9964 402 FGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481 (595)
Q Consensus 402 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 481 (595)
|+||..|+++|......+.+...+++|+.|+++|++++..++..++.+.++|..++++...+|+.+++.+..+|++++.+
T Consensus 306 l~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 385 (395)
T PRK05732 306 LRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLVVGRNLGLMAMDLLPPARDWL 385 (395)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999876554433224589999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHH
Q psy9964 482 CDIFMRT 488 (595)
Q Consensus 482 ~~~~~~~ 488 (595)
++.++|.
T Consensus 386 ~~~~~~~ 392 (395)
T PRK05732 386 ARRTLGW 392 (395)
T ss_pred HHHHhcc
Confidence 9988753
No 19
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.2e-34 Score=309.66 Aligned_cols=323 Identities=18% Similarity=0.229 Sum_probs=235.3
Q ss_pred HHHhhhcccccCcEEEEecCCCcceEEcCCccC--ccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCC
Q psy9964 129 KIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNY--QDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPL 205 (595)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~ 205 (595)
.+++.+.+.+...+.+++.++.....++..... ..+..+.++|..|++.|.+.+.+ .|++|+++++|+++++ ++
T Consensus 68 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~---~~ 144 (538)
T PRK06183 68 ADEVLPHTTPNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQ---DD 144 (538)
T ss_pred hhHHHhhcccCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEE---cC
Confidence 345555555666778887777666666632111 12234678999999999999987 6999999999999996 56
Q ss_pred CceEEEEc--CC--cEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccC-CCCceEEEEeCCCCcEEEee
Q psy9964 206 NNVKIKFE--SG--ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTS-PPNRTAWQRFTPSGTVALLP 280 (595)
Q Consensus 206 ~~v~v~~~--dG--~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p 280 (595)
++|+|+++ +| +++++|+||||||++|.||+.+++......|...++...+..... ......+.++.++++++++|
T Consensus 145 ~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (538)
T PRK06183 145 DGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVR 224 (538)
T ss_pred CeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEE
Confidence 78888887 57 379999999999999999999988766666655555444333221 22223455677888999999
Q ss_pred CCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccc
Q psy9964 281 LSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEK 360 (595)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (595)
++++..++.+...+..... .....+...+ ++..+.. .+... ...
T Consensus 225 ~~~~~~r~~~~~~~~~~~~--~~~~~~~~~~------------------------~l~~~~~-------~~~~~---~~~ 268 (538)
T PRK06183 225 LPHGRRRWEFMLLPGETEE--QLASPENVWR------------------------LLAPWGP-------TPDDA---ELI 268 (538)
T ss_pred cCCCeEEEEEEeCCCCChh--hcCCHHHHHH------------------------HHHhhCC-------CCcce---EEE
Confidence 9888766655543221110 1111111111 1111100 00000 111
Q ss_pred cceeeeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccc
Q psy9964 361 SRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENL 440 (595)
Q Consensus 361 ~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~ 440 (595)
+...|.+....+++|++|||+|+|||||.|+|++|||+|+||+||.+|+|+|.... ++.. .+.+|+.|+++|+|++.
T Consensus 269 ~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~-~g~~--~~~~L~~Ye~eR~p~~~ 345 (538)
T PRK06183 269 RHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVL-RGRA--GDALLDTYEQERRPHAR 345 (538)
T ss_pred EEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHH-cCCC--cHHHHHHHHHHHHHHHH
Confidence 23455665666889999999999999999999999999999999999999997654 3433 57899999999999999
Q ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHHHhhhhh
Q psy9964 441 PVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRTSMEKV 493 (595)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (595)
.++..+..+.+++...++....+|+.+++.+..+|.+++.++....+...+|.
T Consensus 346 ~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~y~ 398 (538)
T PRK06183 346 AMIDLAVRLGRVICPTDRLAAALRDAVLRALNYLPPLKRYVLEMRFKPMPRLT 398 (538)
T ss_pred HHHHHHHHhhhhccCCCHHHHHHHHHHHHhhhcCcchhhhhhhccCCCCCccc
Confidence 99999999999999999999999999999999999999999987777666664
No 20
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=1e-34 Score=301.52 Aligned_cols=309 Identities=15% Similarity=0.163 Sum_probs=230.4
Q ss_pred cCcEEEEecCCC-cceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCc---eEEEEc
Q psy9964 139 KGTSKVWGHSSD-DLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNN---VKIKFE 213 (595)
Q Consensus 139 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~---v~v~~~ 213 (595)
...+++++.++. ..+.|+... ...++++.++|..|.+.|.+.+.+ .|++++++++|++++. +++. |++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~---~~~~v~~v~~~~~ 150 (407)
T PRK06185 75 VRTLRFEIGGRTVTLADFSRLP-TPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIE---EGGRVTGVRARTP 150 (407)
T ss_pred eeeEEEEECCeEEEecchhhcC-CCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEE---eCCEEEEEEEEcC
Confidence 345667654322 123343322 224567889999999999999877 6899999999999986 2333 345556
Q ss_pred CCc-EEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEec
Q psy9964 214 SGE-SIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWAT 292 (595)
Q Consensus 214 dG~-~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~ 292 (595)
+|+ ++++|+||+|||.+|.+|+.++++.....|....++...+... ......+.++.++++++++|.+ +..+++|..
T Consensus 151 ~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~ 228 (407)
T PRK06185 151 DGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREP-DDPESLMGRFGPGQGLIMIDRG-DYWQCGYVI 228 (407)
T ss_pred CCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCCCC-CCCcccceEecCCcEEEEEcCC-CeEEEEEEe
Confidence 775 8999999999999999999999877666665444333322211 1222456678889999999997 778888988
Q ss_pred CHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecccccc
Q psy9964 293 TPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHS 372 (595)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (595)
+..........+.+.+.+.+.+.++. +...++. +. ....+..||+....+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~p~--------------~~~~l~~--------------~~--~~~~~~~~~l~~~~~ 278 (407)
T PRK06185 229 PKGGYAALRAAGLEAFRERVAELAPE--------------LADRVAE--------------LK--SWDDVKLLDVRVDRL 278 (407)
T ss_pred cCCCchhhhhhhHHHHHHHHHHhCcc--------------HHHHHhh--------------cC--CccccEEEEEecccc
Confidence 76544433344445555554433221 0111110 00 123355678777788
Q ss_pred ccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHh
Q psy9964 373 VRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRV 452 (595)
Q Consensus 373 ~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~ 452 (595)
++|+.+|++|+|||||.++|++|||+|+||+||..|++.|.++...++. ....|+.|+++|++++..++..++.+.++
T Consensus 279 ~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~--~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~ 356 (407)
T PRK06185 279 RRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRV--SDRDLAAVQRRREFPTRVTQALQRRIQRR 356 (407)
T ss_pred ccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCc--cHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999887665533 45899999999999999999999999999
Q ss_pred hcCCc--hHHHHHHHHHHHhhccChhHHHHHHHHH
Q psy9964 453 YRSSL--TPVKILGNLGFQLVNAVRPIKSILCDIF 485 (595)
Q Consensus 453 ~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 485 (595)
|..+. ++...+|+.++..++++|++|+.+++.+
T Consensus 357 ~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~ 391 (407)
T PRK06185 357 LLAPALAGRGPLGPPLLLRLLNRLPWLRRLPARLV 391 (407)
T ss_pred hccccccCccccCCchHHHHHHhChhHHHhhHHhe
Confidence 99988 8999999999999999999999998865
No 21
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=297.26 Aligned_cols=321 Identities=15% Similarity=0.144 Sum_probs=219.8
Q ss_pred HHHhhhcccccCcEEEEecCCCcceEEcCCccC--ccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCC
Q psy9964 129 KIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNY--QDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLN 206 (595)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~ 206 (595)
.+++.+.+.+...+.+++.+|.....++..... .+...+.++|.+|++.|++.+. .+++|+++++|+++++ +++
T Consensus 58 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~---~~~ 133 (391)
T PRK07588 58 TDQLREAGYQIEHVRSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDE---HRD 133 (391)
T ss_pred HHHHHhccCCccceEEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEE---CCC
Confidence 345556666677888888777655555543211 1122368999999999999775 5799999999999986 567
Q ss_pred ceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcc-cCCCCeEEEEEEEecc-CCCCceEEEEeC-CCCcEEEeeCCC
Q psy9964 207 NVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSN-WSYDQKGIVATVKIST-SPPNRTAWQRFT-PSGTVALLPLSD 283 (595)
Q Consensus 207 ~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~g~~~~~p~~~ 283 (595)
+|+|+++||+++++|+||||||++|.||+.+...... ..|. ......+.... .+.....+..+. ++++++.+|+.+
T Consensus 134 ~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 212 (391)
T PRK07588 134 GVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYL-GCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRG 212 (391)
T ss_pred eEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEc-CcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCC
Confidence 8999999999999999999999999999986322221 1221 11122222221 122223344443 556889999988
Q ss_pred CCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccce
Q psy9964 284 EFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRA 363 (595)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (595)
+...++|....... ....+.+...+.+.+.+....... ..++... ... ....
T Consensus 213 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~--------------~~~--~~~~ 264 (391)
T PRK07588 213 DRTLFLFIFRAEHD--NPPLTPAEEKQLLRDQFGDVGWET----------PDILAAL--------------DDV--EDLY 264 (391)
T ss_pred CCeEEEEEEEcCCc--cccCCHHHHHHHHHHHhccCCccH----------HHHHHhh--------------hcc--cchh
Confidence 87666665543221 112233444444444433211100 0011100 000 0011
Q ss_pred eeeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHH
Q psy9964 364 AFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVM 443 (595)
Q Consensus 364 ~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~ 443 (595)
.+++....+++|+.|||+|+|||||+|+|+.|||+|+||+||..|+++|.... .+ .+.+|+.|++.|++++..++
T Consensus 265 ~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~---~~--~~~al~~Y~~~R~~~~~~~~ 339 (391)
T PRK07588 265 FDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG---GD--HRRAFDAYEKRLRPFIAGKQ 339 (391)
T ss_pred eeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc---CC--HHHHHHHHHHHHHHHHHHHH
Confidence 12223335678999999999999999999999999999999999999996421 22 57899999999999999999
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q psy9964 444 LSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRT 488 (595)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 488 (595)
..++.+.++|++++++...+|+.++..++ .|++++.+++-...+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~~~~~~~~~~~ 383 (391)
T PRK07588 340 AAAAKFLSVFAPKTRFGLYVRNIAMKIMN-LPPVADFVGAGSFRD 383 (391)
T ss_pred hhcccccccccCCCHHHHHHHHHHHHHhc-cchhhhhhhhccccC
Confidence 99999999999999999999999999988 899999987755443
No 22
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=289.35 Aligned_cols=309 Identities=30% Similarity=0.469 Sum_probs=232.0
Q ss_pred cCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcCC-ceEEeCCeEeEEecCCCCCCceEEEEcCCcE
Q psy9964 139 KGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN-IDIVYQKKVAHYELPEQPLNNVKIKFESGES 217 (595)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g-v~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~ 217 (595)
...+.+++... ..+.+.......+...+.++|..|++.|.+.+++.| ++++ +++|++++. +++.+.|++.+|++
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~---~~~~~~v~~~~g~~ 153 (388)
T PRK07608 79 VYDMRVFGDAH-ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEV---DPDAATLTLADGQV 153 (388)
T ss_pred ceEEEEEECCC-ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEe---cCCeEEEEECCCCE
Confidence 34555554432 334444322223456789999999999999998865 9988 999999985 56678999999999
Q ss_pred EEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhhH
Q psy9964 218 IECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENA 297 (595)
Q Consensus 218 ~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~ 297 (595)
+++|+||+|||++|.+|+.++.......|...++...++.+. ......+.++.++++++++|++++...++|..+....
T Consensus 154 ~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 232 (388)
T PRK07608 154 LRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER-PHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHA 232 (388)
T ss_pred EEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC-CCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHH
Confidence 999999999999999999998776656665666666666543 2234456667788899999999998888887765443
Q ss_pred HHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccC
Q psy9964 298 KALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIG 377 (595)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (595)
......+++.+.+.+....+. .+. .+..+ .....+|+.....+.|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~--------------~~~~~--~~~~~~~~~~~~~~~~~~ 279 (388)
T PRK07608 233 DELLALSPEALAARVERASGG-----------------RLG--------------RLECV--TPAAGFPLRLQRVDRLVA 279 (388)
T ss_pred HHHHCCCHHHHHHHHHHHHHH-----------------hcC--------------Cceec--CCcceeecchhhhhhhhc
Confidence 333334444444443322110 000 01101 122346666666889999
Q ss_pred CCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCc
Q psy9964 378 PGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSL 457 (595)
Q Consensus 378 grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
+||+|+|||||+|+|++|||+|+||+||..|+++|......+ +....++|+.|+++|++++..++..++.+.++|..++
T Consensus 280 ~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~-~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~ 358 (388)
T PRK07608 280 PRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR-DLGDLRLLRRYERARREDILALQVATDGLQRLFALPG 358 (388)
T ss_pred CceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999997653211 2224579999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy9964 458 TPVKILGNLGFQLVNAVRPIKSILCDIFMR 487 (595)
Q Consensus 458 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 487 (595)
++...+|+.+++.+..+|++++.+++.+++
T Consensus 359 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T PRK07608 359 PLARWLRNAGMALVGALPLVKRWLVRHALG 388 (388)
T ss_pred hHHHHHHHHHHHHHhhChHHHHHHHHHhcC
Confidence 999999999999999999999999887653
No 23
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=295.51 Aligned_cols=282 Identities=18% Similarity=0.234 Sum_probs=219.4
Q ss_pred ccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcc
Q psy9964 164 RISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSN 243 (595)
Q Consensus 164 ~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~ 243 (595)
++++.+.|..|++.|.+.+.+.|++|+++++|+++++ +++++.|++.+|+++++|+||+|||++|.||+.+++...+
T Consensus 92 ~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~---~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g 168 (488)
T PRK06834 92 NYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQ---DDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPG 168 (488)
T ss_pred CccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE---cCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCC
Confidence 5678899999999999999888999999999999996 5678999999998999999999999999999999998888
Q ss_pred cCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCC-CCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcch
Q psy9964 244 WSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLS-DEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAEL 322 (595)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (595)
..|...++.+.+....++... ..+.+.+.+.+.|.. ++..+++|..+.... ....+.+++.+.+.+.+.....
T Consensus 169 ~~~~~~~~~~dv~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~g~~~~- 242 (488)
T PRK06834 169 WDPTTSYLIAEVEMTEEPEWG---VHRDALGIHAFGRLEDEGPVRVMVTEKQVGA--TGEPTLDDLREALIAVYGTDYG- 242 (488)
T ss_pred CCcceEEEEEEEEecCCCCcc---eeeCCCceEEEeccCCCCeEEEEEecCCCCC--CCCCCHHHHHHHHHHhhCCCCc-
Confidence 888777777777665422111 223456777778876 566667776442211 1123334444444433321100
Q ss_pred hhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccchhhhhch
Q psy9964 323 NESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGF 402 (595)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al 402 (595)
.....+...|+.....+++|..|||+|+|||||.|+|++|||+|+||
T Consensus 243 ---------------------------------~~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi 289 (488)
T PRK06834 243 ---------------------------------IHSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGV 289 (488)
T ss_pred ---------------------------------cccceeEEeccccceecccccCCcEEEEeeccccCCccccccccccH
Confidence 00112334566667779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHH
Q psy9964 403 GDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILC 482 (595)
Q Consensus 403 ~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 482 (595)
+||.+|+|+|+..+. +.. .+.+|+.|+++|+|.+..++..+..+..++. +++....+|+.++..+...+. ++.++
T Consensus 290 ~DA~nLawkLa~vl~-g~~--~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~-~~~~~~~lR~~~~~~~~~~~~-~~~~~ 364 (488)
T PRK06834 290 QDAVNLGWKLAQVVK-GTS--PESLLDTYHAERHPVAARVLRNTMAQVALLR-PDDRTEALRDIVAELLGMDEP-RKRIA 364 (488)
T ss_pred HHHHHHHHHHHHHHc-CCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHhcCcHH-HHHHH
Confidence 999999999987654 333 5789999999999999999999998888886 677789999999998877665 88888
Q ss_pred HHHHHHhhhh
Q psy9964 483 DIFMRTSMEK 492 (595)
Q Consensus 483 ~~~~~~~~~~ 492 (595)
+.++|...+|
T Consensus 365 ~~~~g~~~~y 374 (488)
T PRK06834 365 AMMSGLDIHY 374 (488)
T ss_pred HHHhcCCccc
Confidence 9899988887
No 24
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=8.2e-33 Score=293.24 Aligned_cols=288 Identities=16% Similarity=0.216 Sum_probs=214.5
Q ss_pred cccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEc--CC-cEEEecEEEEecCCCchhhhhcCC
Q psy9964 163 DRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFE--SG-ESIECKLLLGTDGARSQVRNAMNV 239 (595)
Q Consensus 163 ~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~--dG-~~~~adlvVgADG~~S~vR~~l~~ 239 (595)
.++++.++|..|+++|.+.+.+.|++|+++++++++++ ++++++|++. +| +++++|+||||||++|.||+.+++
T Consensus 91 ~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~---~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi 167 (493)
T PRK08244 91 SNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQ---DGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGI 167 (493)
T ss_pred CCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEE---cCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCC
Confidence 45678899999999999999888999999999999986 4667888775 46 479999999999999999999998
Q ss_pred CCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhhH-HHHhCCCchHHHHHHHHhcCC
Q psy9964 240 QYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENA-KALLQMPGESFVDALNSEFNK 318 (595)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (595)
+..+..+...++.+.+....++ ....+.++.+.++++++|++++..++++..+.... ......+.+++.+.+.+.+..
T Consensus 168 ~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (493)
T PRK08244 168 AFPGTDATFTAMLGDVVLKDPP-PSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGT 246 (493)
T ss_pred CccCCCcceEEEEEEEEecCCC-CcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCC
Confidence 8777666667776666554332 22344556788899999999888777665432110 000112233333333222111
Q ss_pred CcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccchhh
Q psy9964 319 PAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGV 398 (595)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~ 398 (595)
. +. .....+...|++....+++|++|||+|+|||||.++|++|||+
T Consensus 247 ~-----------------~~-----------------~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~ 292 (493)
T PRK08244 247 D-----------------FG-----------------LNDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGL 292 (493)
T ss_pred C-----------------CC-----------------cCCeeEEEecccceeeHhhhccCcEEEeecceeccCCcccccc
Confidence 0 00 0011123346666667889999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccChhHH
Q psy9964 399 NLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478 (595)
Q Consensus 399 n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 478 (595)
|+||+||.+|+++|...+. +.. .+.+|+.|+++|+|++..++..++.+.+++..+ ++...+|+.+... ...+.++
T Consensus 293 n~gi~DA~~La~~La~~l~-g~~--~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~~-~~~~~~~ 367 (493)
T PRK08244 293 NVGLQDAMNLGWKLAAAIK-GWA--PDWLLDSYHAERHPVGTALLRNTEVQTKLFDFT-RPGLALRSMLSDL-LGFPEVN 367 (493)
T ss_pred ccchhhHHHHHHHHHHHHc-CCC--CchhhhhhHHHHHHHHHHHHHHhHHHHHHhcCC-chhHHHHHHHHHH-hcchHHH
Confidence 9999999999999987663 333 568999999999999999999999998888655 6677888876554 4578888
Q ss_pred HHHHHHHHHHhhhhh
Q psy9964 479 SILCDIFMRTSMEKV 493 (595)
Q Consensus 479 ~~~~~~~~~~~~~~~ 493 (595)
+.+.+.+++....|.
T Consensus 368 ~~~~~~~~~~~~~Y~ 382 (493)
T PRK08244 368 RYLAGQISALDVHYE 382 (493)
T ss_pred HHHHHHHhcCCcccC
Confidence 888888888877764
No 25
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=1.5e-31 Score=275.49 Aligned_cols=318 Identities=13% Similarity=0.125 Sum_probs=207.3
Q ss_pred HHHHhhhcccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCc
Q psy9964 128 LKIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNN 207 (595)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~ 207 (595)
+.+++.+.+.+...+.+++.. . ...++..........+.++|..|.+.|++.+.+.|+++++++++++++. .+++.
T Consensus 61 l~~~l~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~--~~~~~ 136 (392)
T PRK08243 61 VGERMDREGLVHDGIELRFDG-R-RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHD--FDSDR 136 (392)
T ss_pred ChHHHHhcCCccCcEEEEECC-E-EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEe--cCCCc
Confidence 334555555566667777642 2 2344433211233445678999999999998888999999999999974 24567
Q ss_pred eEEEE-cCCc--EEEecEEEEecCCCchhhhhcCCCCcccCCCC---eEEEEEEEeccCCCCceEEEEeCCCCcEEEeeC
Q psy9964 208 VKIKF-ESGE--SIECKLLLGTDGARSQVRNAMNVQYSNWSYDQ---KGIVATVKISTSPPNRTAWQRFTPSGTVALLPL 281 (595)
Q Consensus 208 v~v~~-~dG~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~ 281 (595)
+.|++ .||+ +++||+||||||++|.||++++.... ..|.. ..+.+.+. ..++.... +.+...++.+.+++.
T Consensus 137 ~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 213 (392)
T PRK08243 137 PYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGAL-RTFERVYPFGWLGILA-EAPPVSDE-LIYANHERGFALCSM 213 (392)
T ss_pred eEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchh-hceecccCceEEEEeC-CCCCCCCc-eEEeeCCCceEEEec
Confidence 77888 4775 78999999999999999999965431 11110 11111111 11111111 112223344555554
Q ss_pred -CCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccc
Q psy9964 282 -SDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEK 360 (595)
Q Consensus 282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (595)
+++...+++..+... .....+.+.+.+.+...+..... ..+. .....
T Consensus 214 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~--------------------------~~~~----~~~~~ 261 (392)
T PRK08243 214 RSPTRSRYYLQCPLDD--KVEDWSDERFWDELRRRLPPEDA--------------------------ERLV----TGPSI 261 (392)
T ss_pred CCCCcEEEEEEecCCC--CcccCChhHHHHHHHHhcCcccc--------------------------cccc----cCccc
Confidence 444455555443221 11112233333344333221000 0000 00001
Q ss_pred cceeeeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccc
Q psy9964 361 SRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENL 440 (595)
Q Consensus 361 ~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~ 440 (595)
....+|+....+++|+.|||+|+|||||.|+|++|||+|+||+||..|+++|.+....+ .+++|+.|+++|++++.
T Consensus 262 ~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~~~~L~~Ye~~r~~r~~ 337 (392)
T PRK08243 262 EKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG----DTALLDAYSATALRRVW 337 (392)
T ss_pred cccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHH
Confidence 12335665566788999999999999999999999999999999999999998765432 46899999999999999
Q ss_pred hHHHHHHHHHHhhcC---CchHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q psy9964 441 PVMLSIDLMYRVYRS---SLTPVKILGNLGFQLVNAVRPIKSILCDIFMRT 488 (595)
Q Consensus 441 ~~~~~~~~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 488 (595)
.++..+..+.++++. +.++...+|+..+..+..+|..++.++..+.|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK08243 338 KAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYLTSSRAAATTLAENYVGL 388 (392)
T ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCHHHHHHHHHhccCC
Confidence 999999999988765 345677899999999999999999998877665
No 26
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=6.1e-32 Score=277.50 Aligned_cols=296 Identities=18% Similarity=0.201 Sum_probs=200.8
Q ss_pred HHhhhcccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceE
Q psy9964 130 IQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVK 209 (595)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~ 209 (595)
+.+...+.+...+.+++.+|.....++.. ....++.++|..|+++|.+.+. +.+|+++++|++++. ++++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~---~~~~v~ 130 (373)
T PRK06753 59 KGIKNAGQILSTMNLLDDKGTLLNKVKLK---SNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIEN---ETDKVT 130 (373)
T ss_pred HHHHhcCCcccceeEEcCCCCEEeecccc---cCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEe---cCCcEE
Confidence 34444555667788888776543333322 2456789999999999999885 468999999999985 567899
Q ss_pred EEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEE
Q psy9964 210 IKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLV 289 (595)
Q Consensus 210 v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 289 (595)
|+++||+++++|+||||||++|.||+.++.......+....+.+.+..............+.++++++++|+.++...++
T Consensus 131 v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 210 (373)
T PRK06753 131 IHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWF 210 (373)
T ss_pred EEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEEE
Confidence 99999999999999999999999999997644322222233333332222112223344566778899999988766555
Q ss_pred EecCHhhH-HHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeec-
Q psy9964 290 WATTPENA-KALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPL- 367 (595)
Q Consensus 290 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 367 (595)
+.+..... ......+. +.+.+.+....+ .++.+++.. .......++.
T Consensus 211 ~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~----------~~~~~~~~~-----------------~~~~~~~~~~~ 259 (373)
T PRK06753 211 ITINAKERDPKYSSFGK----PHLQAYFNHYPN----------EVREILDKQ-----------------SETGILHHDIY 259 (373)
T ss_pred EEeccccCCcccccccH----HHHHHHHhcCCh----------HHHHHHHhC-----------------Ccccceeeccc
Confidence 54432211 01111111 122222211100 111111110 0000001111
Q ss_pred cccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHH
Q psy9964 368 GFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSID 447 (595)
Q Consensus 368 ~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~ 447 (595)
...+.++|+.+||+|+|||||+|+|+.|||+|+||+||..|+++|... + .+++|+.|++.|++++..++..++
T Consensus 260 ~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-----~--~~~al~~Y~~~r~~~~~~~~~~s~ 332 (373)
T PRK06753 260 DLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-----D--FEKALQRYDKIRVKHTAKVIKRSR 332 (373)
T ss_pred cccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhhc-----c--HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 112357899999999999999999999999999999999999999531 2 578999999999999999999999
Q ss_pred HHHHhhcCCchHHHHHHHHHHHhh
Q psy9964 448 LMYRVYRSSLTPVKILGNLGFQLV 471 (595)
Q Consensus 448 ~~~~~~~~~~~~~~~~r~~~~~~~ 471 (595)
.+.++++.++++...+|+.+++.+
T Consensus 333 ~~~~~~~~~~~~~~~~r~~~l~~~ 356 (373)
T PRK06753 333 KIGKIAQIESKLLVALRNRVMKRM 356 (373)
T ss_pred HHhHHHhcCCchHHHHHHHHHHhC
Confidence 999999998888899999988765
No 27
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=1.9e-31 Score=274.93 Aligned_cols=271 Identities=20% Similarity=0.298 Sum_probs=186.2
Q ss_pred ceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhc-CCCCcc
Q psy9964 166 SYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAM-NVQYSN 243 (595)
Q Consensus 166 ~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l-~~~~~~ 243 (595)
.+.++|.+|+++|++.+.+ .|++++++++|++++.. ++...+.|++++|+++++|+||||||++|.||+++ +.+...
T Consensus 100 ~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~ 178 (388)
T PRK07045 100 FILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERD-ADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAER 178 (388)
T ss_pred eEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEEC-CCCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCccc
Confidence 3568999999999999865 78999999999999863 11223578999999999999999999999999974 554444
Q ss_pred cCCCCeEEEEEEEeccCCCCceEEEEeCC-CCcEEEeeCCCCCeEEEEecCHhhHHHHhC-CCchHHHHHHHHhcCCCcc
Q psy9964 244 WSYDQKGIVATVKISTSPPNRTAWQRFTP-SGTVALLPLSDEFSSLVWATTPENAKALLQ-MPGESFVDALNSEFNKPAE 321 (595)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 321 (595)
..|....+++.+...... ......++.+ +++.+++|..++..+++|..+.+....... ...+.+.+.+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 255 (388)
T PRK07045 179 VPYATPMAFGTIALTDSV-RECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDE-- 255 (388)
T ss_pred CCCCcceeEEEEeccCCc-cccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCcc--
Confidence 445444444555433221 1122223433 455678899888777777765443222111 11222222222111000
Q ss_pred hhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccchhhhhc
Q psy9964 322 LNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLG 401 (595)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~A 401 (595)
+...+. .+.. ......+++....+++|+.|||+|+|||||+|+|++|||+|+|
T Consensus 256 -----------~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~a 308 (388)
T PRK07045 256 -----------SADAMA--------------AIGA--GTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLA 308 (388)
T ss_pred -----------chHHHh--------------ccCc--ccccceeecCccccccccCCCEEEEEccccccCCCccccHHHH
Confidence 000000 0000 0112234565566789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy9964 402 FGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQ 469 (595)
Q Consensus 402 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 469 (595)
|+||..|+++|........+ .+++|+.|+++|++++..++..++.+.+.|+...+.....|.+++.
T Consensus 309 i~Da~~La~~L~~~~~~~~~--~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
T PRK07045 309 IEDAGELGACLDLHLSGQIA--LADALERFERIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQT 374 (388)
T ss_pred HHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhhhhc
Confidence 99999999999775433223 5789999999999999999999999999999888877777766553
No 28
>PRK05868 hypothetical protein; Validated
Probab=99.98 E-value=2.8e-31 Score=270.46 Aligned_cols=300 Identities=11% Similarity=0.040 Sum_probs=191.0
Q ss_pred HHhhhcccccCcEEEEecCCCcceEEcCCc-cC--ccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCC
Q psy9964 130 IQILKYVMIKGTSKVWGHSSDDLLEFNKAH-NY--QDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLN 206 (595)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~ 206 (595)
+.+.+.+.+...+.+++.++.......... .. .....+.+.|.+|.+.|.+.+ ..|++++++++|+++++ +++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~---~~~ 135 (372)
T PRK05868 60 AAAQEHKTRIRGASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQD---DGD 135 (372)
T ss_pred HHHHhhccCccceEEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEe---cCC
Confidence 344444555566777777665333221111 01 112346889999999987765 37899999999999985 567
Q ss_pred ceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcc--cCCCCeEEEEEEEeccCCCCceEEEE-eCCCCcEEEeeCCC
Q psy9964 207 NVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSN--WSYDQKGIVATVKISTSPPNRTAWQR-FTPSGTVALLPLSD 283 (595)
Q Consensus 207 ~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~p~~~ 283 (595)
+|+|+|+||+++++|+||||||++|.||+.+...... ..+.. ....+.++..........+ +.++..+.++|..+
T Consensus 136 ~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 213 (372)
T PRK05868 136 SVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGT--HAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARN 213 (372)
T ss_pred eEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecce--EEEEEEcCCCCCCCcceEEEecCCcEEEEEecCC
Confidence 8999999999999999999999999999998433221 12222 2233333321111112222 35556677888876
Q ss_pred C-CeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCC-cchhhHHHHhhhhhhchhhhccccCCCcccCCCccceecccc
Q psy9964 284 E-FSSLVWATTPENAKALLQMPGESFVDALNSEFNKP-AELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKS 361 (595)
Q Consensus 284 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (595)
+ ....++.+...... ......+...+.+.+.|... ... . .+++ .+.. ..
T Consensus 214 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~f~~~~w~~----~-------~l~~--------------~~~~---~~ 264 (372)
T PRK05868 214 NTEARAALAFMDTELR-IDYRDTEAQFAELQRRMAEDGWVR----A-------QLLH--------------YMRS---AP 264 (372)
T ss_pred CCceEEEEEEecCCcc-cccCChHHHHHHHHHHHhhCCCch----H-------HHHh--------------hccc---CC
Confidence 5 33333333221100 00111122333333333210 000 0 0000 0000 00
Q ss_pred ceeee-ccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccc
Q psy9964 362 RAAFP-LGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENL 440 (595)
Q Consensus 362 ~~~~~-~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~ 440 (595)
...++ +....+++|++|||+|+|||||+|+|+.|||+|+||+||+.|+++|... ..+ .+++|+.||+.++|++.
T Consensus 265 ~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~---~~~--~~~al~~ye~~~~~~~~ 339 (372)
T PRK05868 265 DFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA---GDD--YQLGFANYHAEFHGFVE 339 (372)
T ss_pred ceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc---CCC--HHHHHHHHHHHHhHHHH
Confidence 11122 3444578999999999999999999999999999999999999999653 223 68899999999999999
Q ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy9964 441 PVMLSIDLMYRVYRSSLTPVKILGNLGFQ 469 (595)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 469 (595)
+.+.........|.+.+.+..++|+..+.
T Consensus 340 ~~q~~~~~~~~~~~p~~~~~~~~~~~~~~ 368 (372)
T PRK05868 340 RNQWLVSDNIPGGAPIPQEEFERIVHSIT 368 (372)
T ss_pred HhhhhhhccCCcccCCCHHHHHHhhcccc
Confidence 99999999999999998888888876553
No 29
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.98 E-value=2.8e-30 Score=276.94 Aligned_cols=275 Identities=17% Similarity=0.249 Sum_probs=196.3
Q ss_pred ceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEc--CCc-EEEecEEEEecCCCchhhhhcCCCC
Q psy9964 166 SYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFE--SGE-SIECKLLLGTDGARSQVRNAMNVQY 241 (595)
Q Consensus 166 ~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~--dG~-~~~adlvVgADG~~S~vR~~l~~~~ 241 (595)
.+.++|..|++.|.+.+.+ .+++|+++++|+++++ +++++++++. +|+ ++++|+||||||++|.||+.+++..
T Consensus 119 ~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~---~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~ 195 (547)
T PRK08132 119 FINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQ---HDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEF 195 (547)
T ss_pred eEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE---cCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCC
Confidence 4568999999999999987 6899999999999986 4567777664 555 7999999999999999999999887
Q ss_pred cccCCCCeEEEEEEEeccCCCCceEEEEeC----CCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcC
Q psy9964 242 SNWSYDQKGIVATVKISTSPPNRTAWQRFT----PSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFN 317 (595)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (595)
....+....+...+....+. ....+.++. ++..+++.|.+++..++.+......... .....+.+.+.+.
T Consensus 196 ~g~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~---- 269 (547)
T PRK08132 196 EGRTFEDRFLIADVKMKADF-PTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDADPE-AEKKPENVIPRVR---- 269 (547)
T ss_pred CCccccceEEEEEEEecCCC-CCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCCch-hhcCHHHHHHHHH----
Confidence 77666555555544443221 122233332 2334444555555444443322111000 0111222222222
Q ss_pred CCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccchh
Q psy9964 318 KPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQG 397 (595)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG 397 (595)
+++.. . ..+...+...|++....+++|++|||+|+|||||.|+|++|||
T Consensus 270 -----------------~~~~~---------~-----~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG 318 (547)
T PRK08132 270 -----------------ALLGE---------D-----VPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARG 318 (547)
T ss_pred -----------------HHcCC---------C-----CCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCccccc
Confidence 22210 0 0011123345666677789999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccChhH
Q psy9964 398 VNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPI 477 (595)
Q Consensus 398 ~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 477 (595)
+|+||+||.+|+|+|+..+ ++.. .+.+|+.|+++|+|+++.++..+..+..++...++....+|+.++..+...+.+
T Consensus 319 ~n~gi~DA~~LawkLa~vl-~g~~--~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 395 (547)
T PRK08132 319 ANSGIQDADNLAWKLALVL-RGRA--PDSLLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLRLARDHPFA 395 (547)
T ss_pred ccchHHHHHHHHHHHHHHH-cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcccHHH
Confidence 9999999999999998754 3444 578999999999999999999999999999888888889999999998888888
Q ss_pred HHHHHH
Q psy9964 478 KSILCD 483 (595)
Q Consensus 478 ~~~~~~ 483 (595)
++.+..
T Consensus 396 ~~~~~~ 401 (547)
T PRK08132 396 RRLVNS 401 (547)
T ss_pred HHHHhc
Confidence 877643
No 30
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.98 E-value=2e-30 Score=279.03 Aligned_cols=295 Identities=20% Similarity=0.224 Sum_probs=195.3
Q ss_pred HHHHHhhhcccccCcEEEEecCCCc--ceE----E-cCCccCccccceeeeHHHHHHHHHHHHhcCC--ceEEeCCeEeE
Q psy9964 127 ILKIQILKYVMIKGTSKVWGHSSDD--LLE----F-NKAHNYQDRISYIVENDLIIDAVTKKLNTLN--IDIVYQKKVAH 197 (595)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~----~-~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g--v~i~~~~~v~~ 197 (595)
|+.+++.+.+.....+.+|+.++.. .+. + +..........+.++|..++++|++.+.+.+ ++++++++|++
T Consensus 89 Gl~d~l~~~g~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~ 168 (634)
T PRK08294 89 GFAERILKEAYWINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVD 168 (634)
T ss_pred cchHHHHhhcccccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEE
Confidence 4456677777777778888754321 110 1 1111011112267899999999999998744 58899999999
Q ss_pred EecCCCCCCceEEEEc------CC--cEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEe-ccCCCCceEE-
Q psy9964 198 YELPEQPLNNVKIKFE------SG--ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKI-STSPPNRTAW- 267 (595)
Q Consensus 198 v~~~~~~~~~v~v~~~------dG--~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 267 (595)
+++.++.+..|+|+++ +| ++++||+||||||++|.||+++++...+..+...+.+..+.. ...+.....+
T Consensus 169 ~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~ 248 (634)
T PRK08294 169 LEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCA 248 (634)
T ss_pred EEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEE
Confidence 9874222346888886 35 489999999999999999999998877766654444433332 2112111111
Q ss_pred EEeCCCCcEEEeeCCCCC-eEEEEecCH---hhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhcccc
Q psy9964 268 QRFTPSGTVALLPLSDEF-SSLVWATTP---ENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLS 343 (595)
Q Consensus 268 ~~~~~~g~~~~~p~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (595)
....+++.++++|..++. .++++.... .........+.+++.+.+.+. +. |.
T Consensus 249 ~~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~---------------------~~---p~ 304 (634)
T PRK08294 249 IQSASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRI---------------------LH---PY 304 (634)
T ss_pred EecCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHh---------------------cC---CC
Confidence 122467899999998874 555544321 100011122333333333221 11 10
Q ss_pred CCCcccCCCccceeccccceeeeccccccccc----------cCCCEEEEccccccccCccchhhhhchHHHHHHHHHHH
Q psy9964 344 TGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRY----------IGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSA 413 (595)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~ 413 (595)
...+. ...++..|++.++.+++| ..|||+|+|||||.++|.+|||||+||+||++|+|+|+
T Consensus 305 -------~~~~~--~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa 375 (634)
T PRK08294 305 -------TLDVK--EVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLA 375 (634)
T ss_pred -------CCcee--EEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHH
Confidence 00011 123456677666666665 46999999999999999999999999999999999998
Q ss_pred HhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCc
Q psy9964 414 ESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSL 457 (595)
Q Consensus 414 ~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
..+. +.. .+.+|+.|+++|+|+++.++..++.+.++|+...
T Consensus 376 ~vl~-g~a--~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~~ 416 (634)
T PRK08294 376 AVLS-GRS--PPELLHTYSAERQAIAQELIDFDREWSTMMAAPP 416 (634)
T ss_pred HHHc-CCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7654 433 6789999999999999999999999999997654
No 31
>PRK07190 hypothetical protein; Provisional
Probab=99.97 E-value=8.6e-30 Score=266.69 Aligned_cols=275 Identities=19% Similarity=0.167 Sum_probs=192.6
Q ss_pred cceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCccc
Q psy9964 165 ISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNW 244 (595)
Q Consensus 165 ~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~ 244 (595)
+.+.+.|..++++|.+++.+.|++|+++++|+++++ +++++.+++.+|++++|++||||||.+|.||++++++....
T Consensus 102 ~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~---~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~ 178 (487)
T PRK07190 102 HFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIEL---NQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEII 178 (487)
T ss_pred ceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEE---cCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCcccc
Confidence 457889999999999999889999999999999986 56678888889999999999999999999999999887765
Q ss_pred CCCCeEEEEEEEeccC-CCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchh
Q psy9964 245 SYDQKGIVATVKISTS-PPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELN 323 (595)
Q Consensus 245 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (595)
.+...++.....+... +.......+..+.+.++++|.+++..+++..... ...+.+++.+.+...+..
T Consensus 179 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~~------~~~t~~~~~~~l~~~~~~----- 247 (487)
T PRK07190 179 RPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMDT------KDFTLEQAIAKINHAMQP----- 247 (487)
T ss_pred ccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcCC------CCCCHHHHHHHHHHhcCC-----
Confidence 5543444443333221 1111111123467888999997765554332211 122333333333222111
Q ss_pred hHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecccccccccc-CCCEEEEccccccccCccchhhhhch
Q psy9964 324 ESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYI-GPGCALLGDSAHRIHPLAGQGVNLGF 402 (595)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~grvvLvGDAAH~~~P~~GqG~n~Al 402 (595)
..+.-....+...|++..+.+++|. +|||+|+|||||.++|++|||+|++|
T Consensus 248 ----------------------------~~~~~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~gi 299 (487)
T PRK07190 248 ----------------------------HRLGFKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGL 299 (487)
T ss_pred ----------------------------CCCceEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhH
Confidence 0011112245677899889999997 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHH
Q psy9964 403 GDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILC 482 (595)
Q Consensus 403 ~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 482 (595)
+||.+|+|+|+..+. +.. .+..|+.|+.+|+|.+..++..++.+.++... .+....+|+++- ..+.+.
T Consensus 300 qDA~nL~wkLa~v~~-g~a--~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~ 367 (487)
T PRK07190 300 ADAFNLIWKLNMVIH-HGA--SPELLQSYEAERKPVAQGVIETSGELVRSTKY-SANGTHAQDYVK--------IVEKRA 367 (487)
T ss_pred HHHHHHHHHHHHHHc-CCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCCcCHHHHHH--------HHHHhh
Confidence 999999999986654 333 57899999999999999999999988776533 222222343221 223444
Q ss_pred HHHHHHhhhhh
Q psy9964 483 DIFMRTSMEKV 493 (595)
Q Consensus 483 ~~~~~~~~~~~ 493 (595)
..++|...+|.
T Consensus 368 ~~~~g~~~~Y~ 378 (487)
T PRK07190 368 GYITGMGIRYG 378 (487)
T ss_pred hhhcccccccC
Confidence 55566666653
No 32
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.97 E-value=4e-30 Score=265.71 Aligned_cols=262 Identities=15% Similarity=0.150 Sum_probs=172.0
Q ss_pred eeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEc---CCcEEEecEEEEecCCCchhhhhcCCCCc
Q psy9964 167 YIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFE---SGESIECKLLLGTDGARSQVRNAMNVQYS 242 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~---dG~~~~adlvVgADG~~S~vR~~l~~~~~ 242 (595)
+.++|.+|+++|++.+.+ .+++++++++|+++++ .+++++|++. +++++++|+||||||++|.||++++..
T Consensus 102 ~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~---~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~~~-- 176 (400)
T PRK06475 102 IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ---TGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFS-- 176 (400)
T ss_pred eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec---CCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcCCC--
Confidence 478999999999999976 6899999999999985 5667888873 345899999999999999999998652
Q ss_pred ccCC-CCeEEEEEEEeccCC--------CCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHH
Q psy9964 243 NWSY-DQKGIVATVKISTSP--------PNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALN 313 (595)
Q Consensus 243 ~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (595)
...| ...++.+.+..+..+ .......++.+++.++.+|+.++....++......... .........+.+.
T Consensus 177 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 255 (400)
T PRK06475 177 KARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPG-EVWSKTGDKAHLK 255 (400)
T ss_pred CCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCc-ccCCCCCCHHHHH
Confidence 3344 234444444332211 12223455678889999999877543333222111000 0000000011222
Q ss_pred HhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecccccccc-ccCCCEEEEccccccccC
Q psy9964 314 SEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVR-YIGPGCALLGDSAHRIHP 392 (595)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~grvvLvGDAAH~~~P 392 (595)
+.+....+ .+..+++. . ..+..||+......+ |+.|||+|||||||+|+|
T Consensus 256 ~~~~~~~~----------~~~~~i~~-----------------~--~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P 306 (400)
T PRK06475 256 SIYADWNK----------PVLQILAA-----------------I--DEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTP 306 (400)
T ss_pred HHhcCCCh----------HHHHHHhc-----------------C--CceeECcCcccCCCcceecCCEEEEecccccCCc
Confidence 22211110 01111111 0 112345554433344 467999999999999999
Q ss_pred ccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q psy9964 393 LAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLV 471 (595)
Q Consensus 393 ~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 471 (595)
+.|||+|+||+||..|+++|.. .+ ...+|+.|++.|++++..++..++. .+.+....++....|+..++..
T Consensus 307 ~~GqG~n~aieDa~~La~~L~~-----~~--~~~aL~~Ye~~R~~r~~~~~~~s~~-~~~~~~~~~~~~~~r~~~~~~~ 377 (400)
T PRK06475 307 FAAQGAAMAIEDAAALAEALDS-----DD--QSAGLKRFDSVRKERIAAVAKRGQL-NRFAYHATGIFALGRNMLFAIR 377 (400)
T ss_pred hhhhhHHHHHHHHHHHHHHHhc-----CC--HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHhhc
Confidence 9999999999999999999952 22 5689999999999999999999874 4444334456777888877644
No 33
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.97 E-value=1.4e-29 Score=259.81 Aligned_cols=316 Identities=11% Similarity=0.117 Sum_probs=192.7
Q ss_pred HHHHhhhcccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCc
Q psy9964 128 LKIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNN 207 (595)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~ 207 (595)
+.+++.+.+.+...+.+++..+ ...++..............|..|.+.|.+.+.+.|+.++++++++++... +++.
T Consensus 61 l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~--~~~~ 136 (390)
T TIGR02360 61 VDERMDREGLVHEGTEIAFDGQ--RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL--AGDR 136 (390)
T ss_pred ChHHHHhcCceecceEEeeCCE--EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec--CCCc
Confidence 3345555555666777776433 33333322111122234568899999999988788999999999888642 4556
Q ss_pred eEEEEc-CCc--EEEecEEEEecCCCchhhhhcCCCCcccCCC---CeEEEEEEEeccCCCCceEEEEeCCCCcEEEeeC
Q psy9964 208 VKIKFE-SGE--SIECKLLLGTDGARSQVRNAMNVQYSNWSYD---QKGIVATVKISTSPPNRTAWQRFTPSGTVALLPL 281 (595)
Q Consensus 208 v~v~~~-dG~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~ 281 (595)
+.|++. ||+ ++++|+||||||++|.||++++.... ..|. ..++.+......+.... ..+..+++.+.++|+
T Consensus 137 ~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~ 213 (390)
T TIGR02360 137 PYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVL-KEFERVYPFGWLGILSETPPVSHE--LIYSNHERGFALCSM 213 (390)
T ss_pred cEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccc-eeeeccCCcceEEEecCCCCCCCc--eEEEeCCCceEEEec
Confidence 778886 886 78999999999999999999854322 1111 01222222211111111 223345667777787
Q ss_pred CCC-CeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccc
Q psy9964 282 SDE-FSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEK 360 (595)
Q Consensus 282 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (595)
.++ ...+++..+... .......+.+.+.+.+.++... .+.+. .....
T Consensus 214 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~-----------------~~~~~ 261 (390)
T TIGR02360 214 RSATRSRYYVQVPLTD--KVEDWSDDRFWAELKRRLPSEA-------------AERLV-----------------TGPSI 261 (390)
T ss_pred cCCCcceEEEEcCCCC--ChhhCChhHHHHHHHHhcCchh-------------hhhhc-----------------cCCcc
Confidence 643 333445443221 1122233344444444332100 00000 00000
Q ss_pred cceeeeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccc
Q psy9964 361 SRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENL 440 (595)
Q Consensus 361 ~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~ 440 (595)
....+|+......+|+.|||+|+|||||+|+|+.|||+|+||+||..|+++|...... + .+.+|+.|++.|++++.
T Consensus 262 ~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~--~--~~~al~~Y~~~R~~r~~ 337 (390)
T TIGR02360 262 EKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQE--G--SSAGIEGYSARALARVW 337 (390)
T ss_pred ceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhcc--C--hHHHHHHHHHHHHHHHH
Confidence 1233455555677899999999999999999999999999999999999999764322 2 46899999999999999
Q ss_pred hHHHHHHHHHHhhcCC-c--hHHHHHHHHHHHhhccChhHHHHHHHHHH
Q psy9964 441 PVMLSIDLMYRVYRSS-L--TPVKILGNLGFQLVNAVRPIKSILCDIFM 486 (595)
Q Consensus 441 ~~~~~~~~~~~~~~~~-~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 486 (595)
.+++.++.+.++++.. + .....++.+-+..+-..|..+.+++....
T Consensus 338 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
T TIGR02360 338 KAERFSWWMTSLLHRFPDTDAFDQRIQQAELEYLLGSEAAQATLAENYV 386 (390)
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 9999999998886532 2 22223333444444455555555555433
No 34
>PRK06184 hypothetical protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=269.20 Aligned_cols=246 Identities=21% Similarity=0.291 Sum_probs=176.8
Q ss_pred ccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEE---cCCcEEEecEEEEecCCCchhhhhcCCC
Q psy9964 164 RISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKF---ESGESIECKLLLGTDGARSQVRNAMNVQ 240 (595)
Q Consensus 164 ~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~---~dG~~~~adlvVgADG~~S~vR~~l~~~ 240 (595)
+.++.++|..|+++|.+.+.+.|++|+++++|+++++ ++++|++++ .+++++++|+||||||++|.||+++++.
T Consensus 101 ~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~---~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~ 177 (502)
T PRK06184 101 PLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQ---DADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIG 177 (502)
T ss_pred CcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEE---cCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCC
Confidence 3467899999999999999888999999999999986 566788888 5667899999999999999999999988
Q ss_pred CcccCCCC-eEEEEEEEeccCCCCceEEEEe-CCC-CcEEEeeCCCCC-eEEEEecCHhhHHHHhCCCchHHHHHHHHhc
Q psy9964 241 YSNWSYDQ-KGIVATVKISTSPPNRTAWQRF-TPS-GTVALLPLSDEF-SSLVWATTPENAKALLQMPGESFVDALNSEF 316 (595)
Q Consensus 241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~-g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (595)
..+..+.. ..+...+...... . ..+..+ .+. +.+.++|++++. ..+++..+... ....+.+.+.+.+...+
T Consensus 178 ~~g~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~ 252 (502)
T PRK06184 178 FPGETLGIDRMLVADVSLTGLD-R-DAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGG---EPDLSADGLTALLAERT 252 (502)
T ss_pred cccCcCCCceEEEEEEEeecCC-C-cceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCc---cCCCCHHHHHHHHHHhc
Confidence 77766654 5555555443321 1 223333 333 677888987653 44444433211 11122233322222211
Q ss_pred CCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccch
Q psy9964 317 NKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQ 396 (595)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~Gq 396 (595)
... ...+. ...+...|++....+++|++|||+|+|||||.|+|++||
T Consensus 253 ~~~-------------------------------~~~~~--~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~Gq 299 (502)
T PRK06184 253 GRT-------------------------------DIRLH--SVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQ 299 (502)
T ss_pred CCC-------------------------------Cccee--eeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccc
Confidence 100 00011 112344566666667899999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhc
Q psy9964 397 GVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYR 454 (595)
Q Consensus 397 G~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~ 454 (595)
|+|+||+||.+|+|+|+..+. + . .+.+|+.|+++|+|++..++..+..+.+.+.
T Consensus 300 G~n~gi~DA~~LawkLa~vl~-g-~--~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~ 353 (502)
T PRK06184 300 GLNTSVQDAYNLGWKLAAVLA-G-A--PEALLDTYEEERRPVAAAVLGLSTELLDAIK 353 (502)
T ss_pred cccchHHHHHHHHHHHHHHHc-C-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999987654 3 3 5789999999999999999999988877654
No 35
>PRK06847 hypothetical protein; Provisional
Probab=99.97 E-value=9.1e-29 Score=254.26 Aligned_cols=302 Identities=15% Similarity=0.122 Sum_probs=193.8
Q ss_pred HhhhcccccCcEEEEecCCCcceEEcCCccC--ccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCce
Q psy9964 131 QILKYVMIKGTSKVWGHSSDDLLEFNKAHNY--QDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNV 208 (595)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v 208 (595)
.+.+.+.+...+.+++.++.....++..... ..+..+.+.|..|.+.|.+.+.+.|++|+++++|++++. +++++
T Consensus 64 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~---~~~~~ 140 (375)
T PRK06847 64 ECLEAGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQ---DDDGV 140 (375)
T ss_pred HHHHhCCCccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEE---cCCEE
Confidence 3444455556777787766654444322111 113356789999999999999888999999999999985 45678
Q ss_pred EEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCCC-eEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeE
Q psy9964 209 KIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQ-KGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSS 287 (595)
Q Consensus 209 ~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 287 (595)
+|++.+|+++++|+||+|||.+|.+|+.+........|.. ..+...++.+ ........+..+++.+.++|..++...
T Consensus 141 ~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~ 218 (375)
T PRK06847 141 TVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRP--AEVDRSLMYLGPTTKAGVVPLSEDLMY 218 (375)
T ss_pred EEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCC--CCccceEEEeCCCcEEEEEcCCCCeEE
Confidence 9999999999999999999999999998833222233322 2222233222 111122444556778888898876544
Q ss_pred EEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeec
Q psy9964 288 LVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPL 367 (595)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (595)
+++..+.... .....+.+.+.+.+.+....+ +. +..+.+.+. .......+|+
T Consensus 219 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~----------------~~~~~~~~~~ 270 (375)
T PRK06847 219 LFVTEPRPDN---PRIEPDTLAALLRELLAPFGG--PV-------LQELREQIT----------------DDAQVVYRPL 270 (375)
T ss_pred EEEeccCccc---ccCChHHHHHHHHHHHhhcCc--hH-------HHHHHHhcC----------------CccceeeccH
Confidence 4433322111 112223333333332211110 00 000111000 0001112233
Q ss_pred cc-cccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHH
Q psy9964 368 GF-GHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSI 446 (595)
Q Consensus 368 ~~-~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~ 446 (595)
.. ....+|..|||+|+|||||+|+|++|||+|+||+||..|+++|... .+ .+++|+.|+++|+|++..++..+
T Consensus 271 ~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~----~~--~~~al~~Y~~~R~~r~~~~~~~s 344 (375)
T PRK06847 271 ETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH----DS--LEAALQAYYARRWERCRMVVEAS 344 (375)
T ss_pred hhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC----Cc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1245689999999999999999999999999999999999999642 22 57899999999999999999999
Q ss_pred HHHHHhhcCCch---HHHHHHHHHHHhh
Q psy9964 447 DLMYRVYRSSLT---PVKILGNLGFQLV 471 (595)
Q Consensus 447 ~~~~~~~~~~~~---~~~~~r~~~~~~~ 471 (595)
+.+.+++....+ ....+|++++.++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T PRK06847 345 ARIGRIEIEGGDKAEHAGLMRESMELLA 372 (375)
T ss_pred HHhhheecCCCCccchHHHHHHHHHHhc
Confidence 999998765554 4556666665543
No 36
>PTZ00367 squalene epoxidase; Provisional
Probab=99.97 E-value=4.9e-29 Score=262.53 Aligned_cols=320 Identities=12% Similarity=0.040 Sum_probs=196.7
Q ss_pred HHHhhhcccccCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHH---hcCCceEEeCCeEeEEecCCCC-
Q psy9964 129 KIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKL---NTLNIDIVYQKKVAHYELPEQP- 204 (595)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~---~~~gv~i~~~~~v~~v~~~~~~- 204 (595)
.+.+.+...+..++.+++.+|... ..+.. ....++.++|..|.+.|++.+ ..+|++++. .+|+++..++..
T Consensus 92 ~d~l~~i~~~~~~~~v~~~~G~~~-~i~~~---~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~ 166 (567)
T PTZ00367 92 EECAEGIGMPCFGYVVFDHKGKQV-KLPYG---AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGF 166 (567)
T ss_pred hhhHhhcCcceeeeEEEECCCCEE-EecCC---CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCcc
Confidence 344555555667788888765432 22322 234578899999999999988 347899865 578888642111
Q ss_pred ---CCceEEEEcC-----------------------CcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEec
Q psy9964 205 ---LNNVKIKFES-----------------------GESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKIS 258 (595)
Q Consensus 205 ---~~~v~v~~~d-----------------------G~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~ 258 (595)
..+|++++.+ |++++||+||||||++|.+|+.++.......+............
T Consensus 167 ~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~ 246 (567)
T PTZ00367 167 SERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNV 246 (567)
T ss_pred CCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecc
Confidence 1246666655 56899999999999999999999764433334322211111111
Q ss_pred cCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhh
Q psy9964 259 TSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLE 338 (595)
Q Consensus 259 ~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (595)
..+.......++.++++++++|++++..++++..+.... .+.++..+.+.+...+.. .+.+.+.+...+.
T Consensus 247 ~lp~~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~-----p~~~~~~~~l~~~~~p~l-----~~~l~~~f~~~l~ 316 (567)
T PTZ00367 247 RLPKEQHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTL-----PSLEEQSEWLIEDVAPHL-----PENMRESFIRASK 316 (567)
T ss_pred cCCCCCeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcC-----CChHHHHHHHHHhhcccC-----cHHHHHHHHHhhc
Confidence 222233334457889999999999887665444332210 010111111111111100 0111111111111
Q ss_pred hccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhh-
Q psy9964 339 FFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVS- 417 (595)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~- 417 (595)
. ......+|....+..+|+.+|++|||||||+|+|++|||+|+||+||..|+++|.....
T Consensus 317 ~-------------------~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~ 377 (567)
T PTZ00367 317 D-------------------TKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSL 377 (567)
T ss_pred c-------------------cCCeEEeeHhhCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcc
Confidence 0 00111223333335567889999999999999999999999999999999999975321
Q ss_pred CCCCCC----ChHHHH----HHHHHhhhccchHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy9964 418 NGYPIG----HPESLT----KYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMR 487 (595)
Q Consensus 418 ~~~~~~----~~~~L~----~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 487 (595)
.+.+.+ .+++|+ .|++.|++++..++..++.++++|+. ..+|+..|+.+..-.....--+.+++|
T Consensus 378 ~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~-----~~lr~~~~~y~~~gg~~~~~p~~ll~g 450 (567)
T PTZ00367 378 RSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS-----PALRDACLDYFSLGGECVTGPMSLLSG 450 (567)
T ss_pred cCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhcCCccccccHHHHcC
Confidence 111111 246677 99999999999999999999999987 368888888776544444444444444
No 37
>PLN02985 squalene monooxygenase
Probab=99.97 E-value=7.2e-29 Score=260.49 Aligned_cols=316 Identities=14% Similarity=0.098 Sum_probs=196.0
Q ss_pred ccCcEEEEecCCCcceEEcCCcc--CccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCC--ceEEEE
Q psy9964 138 IKGTSKVWGHSSDDLLEFNKAHN--YQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLN--NVKIKF 212 (595)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~--~v~v~~ 212 (595)
+..++.+++........|+.... .....++.++|.+|.+.|++++.+ .|++++++ +++++.. +++. +|++..
T Consensus 111 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~--~~~~v~gV~~~~ 187 (514)
T PLN02985 111 KATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE--EKGVIKGVTYKN 187 (514)
T ss_pred ccccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE--cCCEEEEEEEEc
Confidence 45667777643223455553221 123467899999999999999977 68999876 5777764 2332 345555
Q ss_pred cCCc--EEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEe-ccCCCCceEEEEeCCCCcEEEeeCCCCCeEEE
Q psy9964 213 ESGE--SIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKI-STSPPNRTAWQRFTPSGTVALLPLSDEFSSLV 289 (595)
Q Consensus 213 ~dG~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 289 (595)
++|+ +++||+||||||++|.+|+.++..... .+ ....+.+.. ...+.......++.+++++.++|++++...++
T Consensus 188 ~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~-~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~ 264 (514)
T PLN02985 188 SAGEETTALAPLTVVCDGCYSNLRRSLNDNNAE-VL--SYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCV 264 (514)
T ss_pred CCCCEEEEECCEEEECCCCchHHHHHhccCCCc-ce--eEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEE
Confidence 6776 467899999999999999999754332 11 111222211 11122223344456778899999988887777
Q ss_pred EecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhh-hccccCCCcccCCCccceeccccceeeecc
Q psy9964 290 WATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLE-FFNLSTGNEQVVPPRVMSVEEKSRAAFPLG 368 (595)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (595)
+..+.+... .....++...+.....+.. .+.+++.+. .+.+. .....+|..
T Consensus 265 ~~~~~~~~~---~~~~~~~~~~~~~~~~p~~---------p~~l~~~f~~~~~~~----------------~~~~~~p~~ 316 (514)
T PLN02985 265 FEVLPDNIP---SIANGEMSTFVKNTIAPQV---------PPKLRKIFLKGIDEG----------------AHIKVVPTK 316 (514)
T ss_pred EEEeCCCCC---CcChhhHHHHHHhcccccc---------CHHHHHHHHhhcccc----------------cceeecCcc
Confidence 766543211 1111122221111111100 011111111 11100 001112222
Q ss_pred ccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHH
Q psy9964 369 FGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDL 448 (595)
Q Consensus 369 ~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~ 448 (595)
..+...|..+|++|+|||||+|+|++|||||+|++||..|+++|.....-++.....++|+.|+++|++++..++..++.
T Consensus 317 ~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~a 396 (514)
T PLN02985 317 RMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNA 396 (514)
T ss_pred cccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 22344566799999999999999999999999999999999999753211111124689999999999999999999999
Q ss_pred HHHhhc-CCchHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy9964 449 MYRVYR-SSLTPVKILGNLGFQLVNAVRPIKSILCDIFMR 487 (595)
Q Consensus 449 ~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 487 (595)
++++|. .++.....+|+..|.....-+....--+.+++|
T Consensus 397 l~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~ 436 (514)
T PLN02985 397 FSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGG 436 (514)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcC
Confidence 999996 456667889998888776654444444455554
No 38
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.97 E-value=1.2e-28 Score=255.20 Aligned_cols=297 Identities=15% Similarity=0.163 Sum_probs=190.5
Q ss_pred hhcccccCcEEEEec-CCCcceEEcCCccC---ccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCc
Q psy9964 133 LKYVMIKGTSKVWGH-SSDDLLEFNKAHNY---QDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNN 207 (595)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~ 207 (595)
.+.+.....+.+++. ++.....++..... .....+.++|.+|++.|.+.+.+ .+++++++++|+++++ ++++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~---~~~~ 142 (396)
T PRK08163 66 RQRAVFTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ---DGDG 142 (396)
T ss_pred HhhccCCcceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec---CCCc
Confidence 334444556677764 34433333322100 12234579999999999999977 4699999999999985 4567
Q ss_pred eEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccCCC---CceEEEEeCCCCcEEEeeCCCC
Q psy9964 208 VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPP---NRTAWQRFTPSGTVALLPLSDE 284 (595)
Q Consensus 208 v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~p~~~~ 284 (595)
++|++.+|+++++|+||+|||++|.+|+.+... .........+.+.++....+. ......+..+++.++.+|+.++
T Consensus 143 v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g 221 (396)
T PRK08163 143 VTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGG 221 (396)
T ss_pred eEEEEcCCCEEecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCC
Confidence 999999999999999999999999999998322 111122344444554332111 1112233456678888999776
Q ss_pred C-eEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccce
Q psy9964 285 F-SSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRA 363 (595)
Q Consensus 285 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (595)
. .+++|........... ......+.+.+.|....+ .+..++.. +. .+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~----------~~~~~~~~-----------~~--------~~~ 270 (396)
T PRK08163 222 EQYNLVVTFHSREQEEWG--VKDGSKEEVLSYFEGIHP----------RPRQMLDK-----------PT--------SWK 270 (396)
T ss_pred eEEEEEEEECCCCCcccc--cCCCCHHHHHHHHcCCCh----------HHHHHHhc-----------CC--------cee
Confidence 4 4555555332211110 000011222222222111 01111110 00 011
Q ss_pred eeec-cccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchH
Q psy9964 364 AFPL-GFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPV 442 (595)
Q Consensus 364 ~~~~-~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~ 442 (595)
.+++ ...+..+|+.|||+|+|||||+|+|++|||+|+||+||..|+++|... +.+ .+.+|+.|+++|++++..+
T Consensus 271 ~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~---~~~--~~~al~~y~~~R~~r~~~~ 345 (396)
T PRK08163 271 RWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC---DGD--AEAAFALYESVRIPRTARV 345 (396)
T ss_pred EccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc---ccc--HHHHHHHHHHHHHHHHHHH
Confidence 1111 122457899999999999999999999999999999999999999642 223 5789999999999999999
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHh
Q psy9964 443 MLSIDLMYRVYRSSLTPVKILGNLGFQL 470 (595)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 470 (595)
+..++.+.++++.+ .....+|+..+..
T Consensus 346 ~~~s~~~~~~~~~~-~~~~~~r~~~~~~ 372 (396)
T PRK08163 346 VLSAREMGRIYHAK-GVERQVRNLLWKG 372 (396)
T ss_pred HHHHHHhHHhhCCC-CHHHHHHHHHhhc
Confidence 99999999999876 4567777766554
No 39
>PRK07538 hypothetical protein; Provisional
Probab=99.96 E-value=2.1e-28 Score=254.01 Aligned_cols=283 Identities=14% Similarity=0.161 Sum_probs=173.2
Q ss_pred HHhhhcccccCcEEEEecCCCcceEEcCCc-cCccccceeeeHHHHHHHHHHHHhc-CC-ceEEeCCeEeEEecCCCCCC
Q psy9964 130 IQILKYVMIKGTSKVWGHSSDDLLEFNKAH-NYQDRISYIVENDLIIDAVTKKLNT-LN-IDIVYQKKVAHYELPEQPLN 206 (595)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~R~~L~~~L~~~~~~-~g-v~i~~~~~v~~v~~~~~~~~ 206 (595)
+.+.+.+.+...+.+++.+|......+... .......+.++|..|++.|++.+.+ .| .+|+++++|+++++ .++
T Consensus 59 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~---~~~ 135 (413)
T PRK07538 59 DALDAIGIRTRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ---DAD 135 (413)
T ss_pred HHHHhhCCCCcceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe---cCC
Confidence 445555555667777776655433222111 0112234679999999999999876 45 57999999999985 455
Q ss_pred ceEEEEcCC-----cEEEecEEEEecCCCchhhhhcCCCCcccCCCCe-EEEEEEEeccCCCCceEEEEeC-CCCcEEEe
Q psy9964 207 NVKIKFESG-----ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQK-GIVATVKISTSPPNRTAWQRFT-PSGTVALL 279 (595)
Q Consensus 207 ~v~v~~~dG-----~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 279 (595)
++.+.+.++ ++++||+||||||++|.||++++.......|... .+.+..+.+. ......+..+. .++.+.++
T Consensus 136 ~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~ 214 (413)
T PRK07538 136 VTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPP-FLTGRSMVMAGHLDGKLVVY 214 (413)
T ss_pred ceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCcc-ccCCCcEEEEcCCCCEEEEE
Confidence 677777654 3899999999999999999999765434444221 1222222221 11122222232 35678888
Q ss_pred eCCCC-----CeEEEEecCHhhHH----HHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccC
Q psy9964 280 PLSDE-----FSSLVWATTPENAK----ALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVV 350 (595)
Q Consensus 280 p~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (595)
|+.++ ...+.|.+...... .....+.+...+++...+.. |.+.. ..+
T Consensus 215 p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~---~~~ 270 (413)
T PRK07538 215 PISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFAD---------------------WRFDW---LDV 270 (413)
T ss_pred ECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcC---------------------CCCCc---ccH
Confidence 98653 23445554322110 00111111122222222211 11000 000
Q ss_pred CCccceeccccceeeecc-ccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHH
Q psy9964 351 PPRVMSVEEKSRAAFPLG-FGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLT 429 (595)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~ 429 (595)
+..+.. ......||+. ..+.++|+.|||+|+|||||+|+|++|||+|+||+||..|+++|.+. .+ .+++|+
T Consensus 271 ~~~i~~--~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~----~~--~~~aL~ 342 (413)
T PRK07538 271 PALIRA--AEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH----GD--PEAALA 342 (413)
T ss_pred HHHHhc--CcceeeccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc----CC--HHHHHH
Confidence 000000 0112234443 23467899999999999999999999999999999999999999753 22 578999
Q ss_pred HHHHHhhhccchHHHHHHH
Q psy9964 430 KYESIRQRENLPVMLSIDL 448 (595)
Q Consensus 430 ~Y~~~r~~~~~~~~~~~~~ 448 (595)
.|+++|++++..++..++.
T Consensus 343 ~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 343 AYEAERRPATAQIVLANRL 361 (413)
T ss_pred HHHHHhhHHHHHHHHHhhh
Confidence 9999999999999988876
No 40
>PRK06126 hypothetical protein; Provisional
Probab=99.96 E-value=3.6e-28 Score=261.02 Aligned_cols=246 Identities=18% Similarity=0.240 Sum_probs=167.6
Q ss_pred cceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEcC---Cc--EEEecEEEEecCCCchhhhhcC
Q psy9964 165 ISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFES---GE--SIECKLLLGTDGARSQVRNAMN 238 (595)
Q Consensus 165 ~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~d---G~--~~~adlvVgADG~~S~vR~~l~ 238 (595)
.++.++|..|+++|++.+.+ .+++|+++++|+++++ ++++|++++.+ |+ ++++|+||||||++|.||+.++
T Consensus 119 ~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~---~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 119 LPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQ---DADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEE---CCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 46789999999999999976 7899999999999986 45677787743 64 7899999999999999999999
Q ss_pred CCCcccCCCCeEEEEEEEeccC---CCCce--EEEEeCCCCcEEEeeCCCCCeEEEEe-cCHhhHHHHhCCCchHHHHHH
Q psy9964 239 VQYSNWSYDQKGIVATVKISTS---PPNRT--AWQRFTPSGTVALLPLSDEFSSLVWA-TTPENAKALLQMPGESFVDAL 312 (595)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~g~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 312 (595)
+...+..+....+...+..+.. ..... .+..+.++....+++..++. .+.+. ..... .....+.+.+.+.+
T Consensus 196 i~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 272 (545)
T PRK06126 196 ISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRD-EWLFHQLRGGE--DEFTIDDVDARAFV 272 (545)
T ss_pred CccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECCCC-eEEEEEecCCC--CCCCCCHHHHHHHH
Confidence 8776655443333333433211 11111 22234455555666665443 22222 22111 00112223333333
Q ss_pred HHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccC
Q psy9964 313 NSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHP 392 (595)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P 392 (595)
.+.+.. +++..+. ....|.+....+++|++|||+|+|||||.|+|
T Consensus 273 ~~~~~~------------------------------~~~~~i~-----~~~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P 317 (545)
T PRK06126 273 RRGVGE------------------------------DIDYEVL-----SVVPWTGRRLVADSYRRGRVFLAGDAAHLFTP 317 (545)
T ss_pred HHhcCC------------------------------CCCeEEE-----eecccchhheehhhhccCCEEEechhhccCCC
Confidence 322211 0111111 12234455667899999999999999999999
Q ss_pred ccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhc
Q psy9964 393 LAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYR 454 (595)
Q Consensus 393 ~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~ 454 (595)
++|||+|+||+||.+|+++|..... +.. .+++|+.|+++|+|++..++..+..+...+.
T Consensus 318 ~~GqG~N~gieDa~~La~~La~~~~-~~~--~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~ 376 (545)
T PRK06126 318 TGGYGMNTGIGDAVNLAWKLAAVLN-GWA--GPALLDSYEAERRPIAARNTDYARRNADALG 376 (545)
T ss_pred CcCcccchhHHHHHHHHHHHHHHHc-CCC--cHHHHhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999976543 322 5789999999999999999999988776554
No 41
>PRK07236 hypothetical protein; Provisional
Probab=99.96 E-value=3.6e-28 Score=250.09 Aligned_cols=249 Identities=17% Similarity=0.171 Sum_probs=158.4
Q ss_pred eeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCC
Q psy9964 168 IVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYD 247 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~ 247 (595)
.+.|..|.+.|.+.+ .+++|+++++|+++++ ++++|+|+++||+++++|+||||||++|.||+.+. +.....|.
T Consensus 96 ~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~---~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~-~~~~~~~~ 169 (386)
T PRK07236 96 QTSWNVLYRALRAAF--PAERYHLGETLVGFEQ---DGDRVTARFADGRRETADLLVGADGGRSTVRAQLL-PDVRPTYA 169 (386)
T ss_pred ccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEe---cCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhC-CCCCCCcC
Confidence 357888999998866 5678999999999986 56789999999999999999999999999999983 33334443
Q ss_pred Ce-EEEEEEEeccCCC------CceEEEEeCCCCcEEEeeCCCC---------CeEEEEecCHhhH---HHH-hCC----
Q psy9964 248 QK-GIVATVKISTSPP------NRTAWQRFTPSGTVALLPLSDE---------FSSLVWATTPENA---KAL-LQM---- 303 (595)
Q Consensus 248 ~~-~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~p~~~~---------~~~~~~~~~~~~~---~~~-~~~---- 303 (595)
.. .+.+.+....... ......++.+++.++.+|+++. ..+++|..+.... ... ...
T Consensus 170 g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (386)
T PRK07236 170 GYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTR 249 (386)
T ss_pred CeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCcc
Confidence 22 2222222111111 1112223356667888887642 2345665543221 000 000
Q ss_pred ---------CchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecccccccc
Q psy9964 304 ---------PGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVR 374 (595)
Q Consensus 304 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (595)
..+.+.+.+.+.+... ..+.++.++... . ....+++.....++
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~-----------------~--~~~~~~~~~~~~~~ 301 (386)
T PRK07236 250 RPFSVPPGALRDDVLAELRDDAAEL---------LAPVFAELVEAT-----------------A--QPFVQAIFDLEVPR 301 (386)
T ss_pred ccCCCCccccCHHHHHHHHHHHHHh---------cCHHHHHHHhhC-----------------c--CchhhhhhcccCcc
Confidence 0111122221111000 000111111100 0 00112222233578
Q ss_pred ccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhc
Q psy9964 375 YIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYR 454 (595)
Q Consensus 375 ~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~ 454 (595)
|..|||+|+|||||+|+|+.|||+|+||+||..|+++|... ..+ ...+|+.|++.|++++..++..++.+..++.
T Consensus 302 ~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~---~~~--~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~ 376 (386)
T PRK07236 302 MAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAA---AGD--IDAALAAWEAERLAVGAAIVARGRRLGARLQ 376 (386)
T ss_pred cccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhc---ccc--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999653 122 5789999999999999999999999888764
Q ss_pred C
Q psy9964 455 S 455 (595)
Q Consensus 455 ~ 455 (595)
.
T Consensus 377 ~ 377 (386)
T PRK07236 377 A 377 (386)
T ss_pred h
Confidence 3
No 42
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.96 E-value=2.2e-28 Score=254.12 Aligned_cols=258 Identities=19% Similarity=0.231 Sum_probs=168.5
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCC----CCc
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNV----QYS 242 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~----~~~ 242 (595)
..++|..|.+.|.+.+. +..++++++|++++. ++++++|+++||+++++|+||||||++|.||+.+.. ...
T Consensus 100 ~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~---~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~~ 174 (414)
T TIGR03219 100 SSVHRADFLDALLKHLP--EGIASFGKRATQIEE---QAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPV 174 (414)
T ss_pred ccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEe---cCCcEEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCCCC
Confidence 46899999999999884 356899999999985 567799999999999999999999999999999832 112
Q ss_pred ccCC-CCeEEEEEEEeccC---------CC--CceEEEEeCCCCcEEEeeCCCCCeE-EEEecCHhhHHH--H---hCCC
Q psy9964 243 NWSY-DQKGIVATVKISTS---------PP--NRTAWQRFTPSGTVALLPLSDEFSS-LVWATTPENAKA--L---LQMP 304 (595)
Q Consensus 243 ~~~~-~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~g~~~~~p~~~~~~~-~~~~~~~~~~~~--~---~~~~ 304 (595)
.+.| ....+.+.+..... +. ......++.+++.++++|+.++... +++......... + ....
T Consensus 175 ~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (414)
T TIGR03219 175 RPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWV 254 (414)
T ss_pred CccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCccc
Confidence 2233 22333444432210 00 0111234567788888999887643 333322111000 0 0001
Q ss_pred chHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecc-ccccccccCCCEEEE
Q psy9964 305 GESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLG-FGHSVRYIGPGCALL 383 (595)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~grvvLv 383 (595)
.+...+.+.+.|....+ .++++++... . ...+++. ....++|++|||+|+
T Consensus 255 ~~~~~~~l~~~~~~~~~----------~v~~~~~~~~--------------~-----~~~~~~~~~~~~~~w~~grv~Li 305 (414)
T TIGR03219 255 REATQREMLDAFAGWGD----------AARALLECIP--------------A-----PTLWALHDLAELPGYVHGRVALI 305 (414)
T ss_pred CccCHHHHHHHhcCCCH----------HHHHHHHhCC--------------C-----CCceeeeecccccceeeCcEEEE
Confidence 11122233333322111 1111222110 0 0011211 124678999999999
Q ss_pred ccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCchHH
Q psy9964 384 GDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPV 460 (595)
Q Consensus 384 GDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (595)
|||||+|+|+.|||+|+||+||..|+++|.....++.+ .+.+|+.||++|+|++..+++.++.+.++++..++..
T Consensus 306 GDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~--~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~ 380 (414)
T TIGR03219 306 GDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGD--LPALLEAYDDVRRPRACRVQRTSREAGELYELRDPAV 380 (414)
T ss_pred EcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcch--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhc
Confidence 99999999999999999999999999999764333333 6789999999999999999999999999988766533
No 43
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.96 E-value=1.3e-28 Score=251.59 Aligned_cols=246 Identities=24% Similarity=0.354 Sum_probs=157.7
Q ss_pred ccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC---c--EEEecEEEEecCCCchhhhh
Q psy9964 162 QDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG---E--SIECKLLLGTDGARSQVRNA 236 (595)
Q Consensus 162 ~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG---~--~~~adlvVgADG~~S~vR~~ 236 (595)
.....+.+.|..|++.|.+.+++.|++|+++++++++++ +.+++++.+.++ + +++||+||||||++|.||+.
T Consensus 101 ~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~---d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~ 177 (356)
T PF01494_consen 101 KGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQ---DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQ 177 (356)
T ss_dssp GSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEE---ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHH
T ss_pred cCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccc---cccccccccccccCCceeEEEEeeeecccCcccchhhh
Confidence 356678999999999999999988899999999999986 556776666544 2 79999999999999999999
Q ss_pred cCCCCcccCCC--CeEEEEEEEeccC-CCCceEEEEeCCCCcEEEeeCCCC-CeEEEEecCHhhHHHHhCCCchHHHHHH
Q psy9964 237 MNVQYSNWSYD--QKGIVATVKISTS-PPNRTAWQRFTPSGTVALLPLSDE-FSSLVWATTPENAKALLQMPGESFVDAL 312 (595)
Q Consensus 237 l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (595)
++.......+. ...+...+..... ......+....+.+.++++|..++ ...+++.+...... .....+...+.+
T Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 255 (356)
T PF01494_consen 178 LGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFDESK--EERPEEFSPEEL 255 (356)
T ss_dssp TTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEETTTTT--CCSTHCHHHHHH
T ss_pred ccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEeeeccccc--cccccccccccc
Confidence 98663333221 1111112222111 111223444444555688998883 34444444322210 011111111111
Q ss_pred HHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccC
Q psy9964 313 NSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHP 392 (595)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P 392 (595)
.+. +...+.. .... ........+++.....++|++|||+|||||||+|+|
T Consensus 256 ~~~-----------------~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P 305 (356)
T PF01494_consen 256 FAN-----------------LPEIFGP------------DLLE-TEIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDP 305 (356)
T ss_dssp HHH-----------------HHHHHHT------------CHHH-HEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-C
T ss_pred ccc-----------------ccccccc------------cccc-cccccccccccccccccccccceeEEeccceeeecc
Confidence 111 0111110 0000 011233456666667889999999999999999999
Q ss_pred ccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHH
Q psy9964 393 LAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLS 445 (595)
Q Consensus 393 ~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~ 445 (595)
+.|||+|+||+||..|+++|..... +.. .+++|+.|+++|+++++++++.
T Consensus 306 ~~GqG~n~Ai~da~~La~~L~~~~~-g~~--~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 306 FSGQGINMAIEDAAALAELLAAALK-GEA--SEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp CTSHHHHHHHHHHHHHHHHHHHHHT-TSS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcccccHHHHHHHHHHHhc-CCc--HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987654 433 5789999999999999988764
No 44
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.95 E-value=1.5e-26 Score=244.46 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=160.1
Q ss_pred ccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcc
Q psy9964 164 RISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSN 243 (595)
Q Consensus 164 ~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~ 243 (595)
+.++.++|.+|+++|.+.+.. ..++++++|++++. .+++|+|++.||+++++|+||||||++|.+|+.+.... .
T Consensus 186 p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~---~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~-~ 259 (668)
T PLN02927 186 PVTRVISRMTLQQILARAVGE--DVIRNESNVVDFED---SGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRS-E 259 (668)
T ss_pred CeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEE---eCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCC-C
Confidence 456899999999999887743 24789999999985 56789999999999999999999999999999984322 2
Q ss_pred cCCC-CeEEEEEEEeccCCCCceEEEE-eCCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcc
Q psy9964 244 WSYD-QKGIVATVKISTSPPNRTAWQR-FTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAE 321 (595)
Q Consensus 244 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (595)
..|. ..++.+.++..........+.. ..+..++..++..++...+++....... .....+...+.+.+.+....+
T Consensus 260 ~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~---~~~~~~~~~e~L~~~f~~w~~ 336 (668)
T PLN02927 260 ATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAG---GADAPNGMKKRLFEIFDGWCD 336 (668)
T ss_pred CcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCcc---ccccchhHHHHHHHHhccCCH
Confidence 3332 2333333333211111111222 3444556666666655443332221110 001122333444443332211
Q ss_pred hhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccchhhhhc
Q psy9964 322 LNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLG 401 (595)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~A 401 (595)
.+.+++... +.. ....+..|. .....+|+.|||+|+|||||+|+|+.|||+|+|
T Consensus 337 ----------~v~elI~~t----------~~~----~i~~~~iyd--~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~A 390 (668)
T PLN02927 337 ----------NVLDLLHAT----------EED----AILRRDIYD--RSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMA 390 (668)
T ss_pred ----------HHHHHHHhC----------ccc----cceeeeEEe--ccCCCccccCcEEEEcCccCCCCCccccchHHH
Confidence 111111110 000 000111221 113457999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhC----CCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhh
Q psy9964 402 FGDIACLVQLSAESVSN----GYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVY 453 (595)
Q Consensus 402 l~Da~~La~~L~~~~~~----~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~ 453 (595)
|+||+.|+.+|..+... +.+...+.+|+.|+++|++++..++..++....++
T Consensus 391 ieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~ 446 (668)
T PLN02927 391 IEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMA 446 (668)
T ss_pred HHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999776422 12223578999999999999999998876555443
No 45
>KOG2614|consensus
Probab=99.93 E-value=2.2e-25 Score=214.43 Aligned_cols=280 Identities=19% Similarity=0.252 Sum_probs=146.0
Q ss_pred HHHHHhhhcccccCcE-EEEecCCCcceEEcCCccCccccceee-eHHHHHHHHHHHHhcCCceEEeCC------eEeEE
Q psy9964 127 ILKIQILKYVMIKGTS-KVWGHSSDDLLEFNKAHNYQDRISYIV-ENDLIIDAVTKKLNTLNIDIVYQK------KVAHY 198 (595)
Q Consensus 127 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i-~R~~L~~~L~~~~~~~gv~i~~~~------~v~~v 198 (595)
++.+.+.+.+.+.+.. .+++..|+....++... .+.+-..+ +|..++.+|.+++.... |+++. ....+
T Consensus 58 ~~~e~i~~~gip~~~~v~~~~~sg~~~~~~~~~~--~~~~i~r~~~r~ll~~lL~~a~~~~~--ikf~~~~~~~~~~~~~ 133 (420)
T KOG2614|consen 58 GLKEQIREQGIPLGGRVLIHGDSGKEVSRILYGE--PDEYILRINRRNLLQELLAEALPTGT--IKFHSNLSCTSKDVEI 133 (420)
T ss_pred ccHHHHHHhcCcccceeeeecCCCCeeEecccCC--chHHHHHHHHHHHHHHHHHhhcCCCe--eeccccccccccccee
Confidence 4567788888887654 45556666566665543 23343444 45555555555554344 55553 33333
Q ss_pred ecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEE--EEEeccCCCCceEEEEeCCCCcE
Q psy9964 199 ELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVA--TVKISTSPPNRTAWQRFTPSGTV 276 (595)
Q Consensus 199 ~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~ 276 (595)
+. ......|++.||.++++|+||||||++|.||+.|+...+...+ ..++.. .++...+. ....+ ....+.+
T Consensus 134 ~~---~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~~~~-~~ayrg~~~~~~~~~~-~~~vf--~~~~~~~ 206 (420)
T KOG2614|consen 134 ET---LGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYDG-SQAYRGLGFIPNGIPF-GKKVF--AIYGNGL 206 (420)
T ss_pred ee---cccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccCCccee-EEEEeeeeeccCCCCc-cccee--cccCCeE
Confidence 32 3455778999999999999999999999999999766432222 122222 22222211 11111 1123334
Q ss_pred EEeeCCCCCeEEEEecCHhhHHH-HhCC-CchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCcc
Q psy9964 277 ALLPLSDEFSSLVWATTPENAKA-LLQM-PGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRV 354 (595)
Q Consensus 277 ~~~p~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (595)
..-|.+.....++|......... +.+. .++....... ...+...+.+.+++.... .+.+
T Consensus 207 ~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~----------~v~~~~~en~~d~i~~~~---------~e~i 267 (420)
T KOG2614|consen 207 HSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKKTSL----------EVVDFFPENFPDIIELTG---------EESI 267 (420)
T ss_pred EEcccCCceEEEEEeecCCcccccccCcCCHHHHhhhHH----------HHHHHhHHhHHHHHHhcC---------hHHh
Confidence 44455555555555542211100 0000 0111110000 000111111122222110 0011
Q ss_pred ceeccccceeeeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhC----CCCCC-------
Q psy9964 355 MSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSN----GYPIG------- 423 (595)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~----~~~~~------- 423 (595)
.......+..+|+- ..+-+.++|+|+|||||+|.|+.|||+|+|+||+..|+++|.++... +....
T Consensus 268 ~~t~l~~r~p~~~i---~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~ 344 (420)
T KOG2614|consen 268 VRTPLADRPPWPLI---SVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHA 344 (420)
T ss_pred hhchhhhcCCcCee---eeccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccccceecccchhH
Confidence 11111122223321 22234568999999999999999999999999999999999887541 11111
Q ss_pred -ChHHHHHHHHHhhhcc
Q psy9964 424 -HPESLTKYESIRQREN 439 (595)
Q Consensus 424 -~~~~L~~Y~~~r~~~~ 439 (595)
.+.++..|..+|+.+.
T Consensus 345 ~ie~a~~~Y~~~r~~r~ 361 (420)
T KOG2614|consen 345 IIELAMYSYKEERWRRL 361 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 2457777887774433
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.90 E-value=7.2e-22 Score=204.47 Aligned_cols=271 Identities=16% Similarity=0.223 Sum_probs=170.7
Q ss_pred cEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcC------
Q psy9964 141 TSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFES------ 214 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~d------ 214 (595)
++.++.+++ ..+.++... ....+.++++|..|++.|.+++.+.|++++.+ ++++++..++.++.+.|++.+
T Consensus 103 ~~~~~~p~~-~~v~~~~~~-~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~ 179 (450)
T PLN00093 103 KMKMISPSN-VAVDIGKTL-KPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSG 179 (450)
T ss_pred hheEecCCc-eEEEecccC-CCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEecccccc
Confidence 445555433 234444221 11234456999999999999999999999876 588886421123456677643
Q ss_pred -C--cEEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEEEeccC---CCCceEEEEe----CCCCcEEEeeCCCC
Q psy9964 215 -G--ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTS---PPNRTAWQRF----TPSGTVALLPLSDE 284 (595)
Q Consensus 215 -G--~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~g~~~~~p~~~~ 284 (595)
| .+++||+||||||++|.||+.++... ..+ ..++...+..+.. ........++ .|+++.|++|.++
T Consensus 180 ~g~~~~v~a~~VIgADG~~S~vrr~lg~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~- 255 (450)
T PLN00093 180 AGTPKTLEVDAVIGADGANSRVAKDIDAGD--YDY-AIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD- 255 (450)
T ss_pred CCCccEEEeCEEEEcCCcchHHHHHhCCCC--cce-eEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-
Confidence 4 38999999999999999999998652 121 1222222222211 0111111222 3567889999885
Q ss_pred CeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceecccccee
Q psy9964 285 FSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAA 364 (595)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (595)
..++...... ...+...+.+.+...+.. .+. ...+ .....
T Consensus 256 ~~~VG~g~~~------~~~~~~~~~~~l~~~~~~-----------------~l~------------~~~~-----~~~~~ 295 (450)
T PLN00093 256 HVAVGTGTVV------NKPAIKKYQRATRNRAKD-----------------KIA------------GGKI-----IRVEA 295 (450)
T ss_pred cEEEEEEEcc------CCCChHHHHHHHHHHhhh-----------------hcC------------CCeE-----EEEEE
Confidence 4444442111 011222222222211100 000 0000 01223
Q ss_pred eeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHH
Q psy9964 365 FPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVML 444 (595)
Q Consensus 365 ~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~ 444 (595)
.+++....++|..+|++|+|||||.++|++|+|+++||.+|..+|+.+.+++..+.+......|+.|++.++......+.
T Consensus 296 ~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~ 375 (450)
T PLN00093 296 HPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYK 375 (450)
T ss_pred EEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44444456788899999999999999999999999999999999999988876653322467899999999988888999
Q ss_pred HHHHHHHhhcCCch
Q psy9964 445 SIDLMYRVYRSSLT 458 (595)
Q Consensus 445 ~~~~~~~~~~~~~~ 458 (595)
.+..+.++|..+++
T Consensus 376 ~~~~l~~~~~~~~~ 389 (450)
T PLN00093 376 VLDILQKVFYRSNP 389 (450)
T ss_pred HHHHHHHHHcCCcH
Confidence 99999998876543
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.89 E-value=7.9e-21 Score=195.48 Aligned_cols=238 Identities=17% Similarity=0.214 Sum_probs=156.9
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcC------C--cEEEecEEEEecCCCchhhhhcC
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFES------G--ESIECKLLLGTDGARSQVRNAMN 238 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~d------G--~~~~adlvVgADG~~S~vR~~l~ 238 (595)
..++|..|++.|.+++.+.|++++.+ +|+++.. +++.+.|++.+ | .+++||+||||||.+|.||+.++
T Consensus 87 ~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~---~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg 162 (388)
T TIGR02023 87 GMVRREVFDSYLRERAQKAGAELIHG-LFLKLER---DRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELG 162 (388)
T ss_pred EeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEE---cCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcC
Confidence 36999999999999998899999765 6999985 45677787764 2 37999999999999999999998
Q ss_pred CCCcccCCCCeEEEEEEEeccC---CCCceEEEE----eCCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHH
Q psy9964 239 VQYSNWSYDQKGIVATVKISTS---PPNRTAWQR----FTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDA 311 (595)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (595)
.+... .+ ..++...+..+.. ........+ +.|+++.|++|.++ ..++...... ...+.+.+.+.
T Consensus 163 ~~~~~-~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~vg~~~~~------~~~~~~~~~~~ 233 (388)
T TIGR02023 163 LPKNL-PR-VIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIAVGTGTGT------HGFDAKQLQAN 233 (388)
T ss_pred CCCCC-cE-EEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeEEeEEECC------CCCCHHHHHHH
Confidence 75321 11 1233333322210 111111111 24567888999875 3444332111 01122233333
Q ss_pred HHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEcccccccc
Q psy9964 312 LNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIH 391 (595)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~ 391 (595)
+.+.+.- . ..+ .+ .....+++....++|..++++|+|||||.++
T Consensus 234 l~~~~~~-------------------~-----------~~~---~~---~~~~~~ip~~~~~~~~~~~v~lvGDAAg~v~ 277 (388)
T TIGR02023 234 LRRRAGL-------------------D-----------GGQ---TI---RREAAPIPMKPRPRWDFGRAMLVGDAAGLVT 277 (388)
T ss_pred HHHhhCC-------------------C-----------Cce---Ee---eeeeEeccccccccccCCCEEEEeccccCcC
Confidence 3222110 0 000 00 0111222223456788899999999999999
Q ss_pred CccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCc
Q psy9964 392 PLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSL 457 (595)
Q Consensus 392 P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
|++|||+++||.+|..+|+++.+++..+ ....|+.|++.++..........+.+..++..++
T Consensus 278 P~tG~GI~~A~~sg~~aa~~i~~~l~~~----~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (388)
T TIGR02023 278 PASGEGIYFAMKSGQMAAQAIAEYLQNG----DATDLRHYERKFMKLYGTTFRVLRVLQMVYYRSD 339 (388)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 9999999999999999999998887653 3578999999999888888777777777775443
No 48
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.89 E-value=1.2e-20 Score=193.92 Aligned_cols=248 Identities=16% Similarity=0.224 Sum_probs=159.4
Q ss_pred cceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEE--cC-----Cc--EEEecEEEEecCCCchhhh
Q psy9964 165 ISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKF--ES-----GE--SIECKLLLGTDGARSQVRN 235 (595)
Q Consensus 165 ~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~--~d-----G~--~~~adlvVgADG~~S~vR~ 235 (595)
+.+.++|..|++.|.+++.+.|++++.++ +++++..++.++.+.|++ .+ |+ +++|++||||||++|.||+
T Consensus 86 ~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~ 164 (398)
T TIGR02028 86 YIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAK 164 (398)
T ss_pred ceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHH
Confidence 34579999999999999999999998885 777753211234455554 22 43 7999999999999999999
Q ss_pred hcCCCCcccCCCCeEEEEEEEeccCC---CCceEEEE----eCCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHH
Q psy9964 236 AMNVQYSNWSYDQKGIVATVKISTSP---PNRTAWQR----FTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESF 308 (595)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (595)
.++.+.. .+ ...+...+..+... .......+ +.|+++.|++|.++ ..++....... ....+.+
T Consensus 165 ~~g~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~~VG~g~~~~------~~~~~~~ 234 (398)
T TIGR02028 165 EIDAGDY--SY-AIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVAA------KPEIKRL 234 (398)
T ss_pred HhCCCCc--ce-EEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eEEEEEEeCCC------CccHHHH
Confidence 9986421 11 12222223322210 11111112 24667899999885 44444321100 0111222
Q ss_pred HHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccc
Q psy9964 309 VDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAH 388 (595)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH 388 (595)
.+.+...... .+. ...+. .....+++....++|..+|++|||||||
T Consensus 235 ~~~l~~~~~~-----------------~~~------------~~~~~-----~~~~~~ip~~~~~~~~~~~~llvGDAAg 280 (398)
T TIGR02028 235 QSGIRARAAG-----------------KVA------------GGRII-----RVEAHPIPEHPRPRRVVGRVALVGDAAG 280 (398)
T ss_pred HHhhhhhhhh-----------------ccC------------CCcEE-----EEEEEeccccccccEECCCEEEEEcCCC
Confidence 2222110000 000 00000 1122333333456788899999999999
Q ss_pred cccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCc
Q psy9964 389 RIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSL 457 (595)
Q Consensus 389 ~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
.++|++|+|+++||.+|..+|+.+.+++..+++......|+.|++.++....+.+..+..+.++|..++
T Consensus 281 ~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (398)
T TIGR02028 281 YVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYRSN 349 (398)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999988776653235678999999998888888999999999887644
No 49
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.88 E-value=8.7e-22 Score=217.41 Aligned_cols=240 Identities=17% Similarity=0.162 Sum_probs=149.1
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcc---
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSN--- 243 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~--- 243 (595)
+.++|.+|++.|.+++.+.|++|++++++++++. . ..++|+||||||++|.||+++......
T Consensus 92 ~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~---~------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~ 156 (765)
T PRK08255 92 AGIGRKRLLNILQARCEELGVKLVFETEVPDDQA---L------------AADADLVIASDGLNSRIRTRYADTFQPDID 156 (765)
T ss_pred ecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh---h------------hcCCCEEEEcCCCCHHHHHHHHhhcCCcee
Confidence 4689999999999999989999999999987752 1 147999999999999999986321111
Q ss_pred cCCCCeEEEEEEEeccCCCCceEEEEeCCCCcE--EEeeCCCCCeEEEEecCHhhHHH--HhCCCchHHHHHHHHhcCCC
Q psy9964 244 WSYDQKGIVATVKISTSPPNRTAWQRFTPSGTV--ALLPLSDEFSSLVWATTPENAKA--LLQMPGESFVDALNSEFNKP 319 (595)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 319 (595)
..+.... ................-...+++ ..+|+.++...+++..+.+.... ....+.+...+.+
T Consensus 157 ~~~~~~~---w~g~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------- 226 (765)
T PRK08255 157 TRRCRFV---WLGTHKVFDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFC------- 226 (765)
T ss_pred cCCCceE---EecCCCcccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHH-------
Confidence 1111111 11111100000000111233432 34677777665555554332111 0111222222222
Q ss_pred cchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCC----EEEEccccccccCccc
Q psy9964 320 AELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPG----CALLGDSAHRIHPLAG 395 (595)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr----vvLvGDAAH~~~P~~G 395 (595)
.+.+..|.+... +......... ..+.++.....++|+.|| |+|+|||||+|+|+.|
T Consensus 227 --------------~~~f~~~~~~~~----li~~~~~~~~--~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~G 286 (765)
T PRK08255 227 --------------EKLFADYLDGHP----LMSNASHLRG--SAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIG 286 (765)
T ss_pred --------------HHHhHHhcCCCc----cccccccccc--ceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcc
Confidence 233333322111 1010000001 112233344578999999 9999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCC
Q psy9964 396 QGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSS 456 (595)
Q Consensus 396 qG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~ 456 (595)
||+|+||+||..|+++|... ..+ .+.+|+.|++.|++++..++..++....+|...
T Consensus 287 qG~~~aieDa~~La~~L~~~---~~~--~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~ 342 (765)
T PRK08255 287 SGTKLALEDAIELARCLHEH---PGD--LPAALAAYEEERRVEVLRIQNAARNSTEWFENV 342 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHc---ccc--HHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Confidence 99999999999999999753 213 678999999999999999999999888777653
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.86 E-value=1.9e-20 Score=186.08 Aligned_cols=208 Identities=15% Similarity=0.281 Sum_probs=136.2
Q ss_pred cccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC-cEEEecEEEEecCCCchhhhhcCCCC
Q psy9964 163 DRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG-ESIECKLLLGTDGARSQVRNAMNVQY 241 (595)
Q Consensus 163 ~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG-~~~~adlvVgADG~~S~vR~~l~~~~ 241 (595)
...++.++|..|.+.|.+.+.+.|++++++++|+++.. .++.+++.+.++ .++++|+||+|||.+|.+|+.++...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~ 158 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEI---HDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRK 158 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEE---eCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCC
Confidence 35678999999999999999889999999999999986 456677777654 48999999999999999999987654
Q ss_pred cccCCCCeEEEEEEEeccCCCCceEEEEe-----CCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhc
Q psy9964 242 SNWSYDQKGIVATVKISTSPPNRTAWQRF-----TPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEF 316 (595)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (595)
....+ ..++...+..+........+..+ .++++.+++|+.++..++.+...... ...+.++..+.+...+
T Consensus 159 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~ 233 (295)
T TIGR02032 159 EPREL-GVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----EGEDLKKYLKDFLARR 233 (295)
T ss_pred CCcce-eeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----CCCCHHHHHHHHHHhC
Confidence 32222 12333344433211111111111 13578899999888777766544321 1222333333332221
Q ss_pred CCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccch
Q psy9964 317 NKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQ 396 (595)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~Gq 396 (595)
+. +.. .. +........|.. ....+|+.+||+|+|||||.++|++||
T Consensus 234 ~~------------------l~~--------------~~-~~~~~~~~~~~~-~~~~~~~~~~v~liGDAA~~~~P~~g~ 279 (295)
T TIGR02032 234 PE------------------LKD--------------AE-TVEVIGAPIPIG-RPDDKTVRGNVLLVGDAAGHVKPLTGE 279 (295)
T ss_pred cc------------------ccc--------------Cc-EEeeeceeeccC-CCCCccccCCEEEEecccCCCCCccCC
Confidence 10 000 00 000011112221 245678899999999999999999999
Q ss_pred hhhhchHHHHHHHHHH
Q psy9964 397 GVNLGFGDIACLVQLS 412 (595)
Q Consensus 397 G~n~Al~Da~~La~~L 412 (595)
|+|+||+||..+|++|
T Consensus 280 G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 280 GIYYAMRSGDVAAEVI 295 (295)
T ss_pred cHHHHHHHHHHHHhhC
Confidence 9999999999999874
No 51
>PRK11445 putative oxidoreductase; Provisional
Probab=99.85 E-value=5.1e-20 Score=186.54 Aligned_cols=218 Identities=13% Similarity=0.069 Sum_probs=130.6
Q ss_pred ceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEE-cCCc--EEEecEEEEecCCCchhhhhcCCCCc
Q psy9964 166 SYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKF-ESGE--SIECKLLLGTDGARSQVRNAMNVQYS 242 (595)
Q Consensus 166 ~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~-~dG~--~~~adlvVgADG~~S~vR~~l~~~~~ 242 (595)
.+.++|.+|++.|.+.+ +.|++++++++|+++++ .++++.|++ ++|+ ++++|+||+|||++|.+|+.++....
T Consensus 93 ~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~i~~---~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~ 168 (351)
T PRK11445 93 YINIDRHKFDLWLKSLI-PASVEVYHNSLCRKIWR---EDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQ 168 (351)
T ss_pred cccccHHHHHHHHHHHH-hcCCEEEcCCEEEEEEE---cCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCc
Confidence 35799999999999865 47899999999999986 456788886 5775 79999999999999999999875432
Q ss_pred ccCCCCeEEEEEEEeccCCCCce-EEEEeCCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcc
Q psy9964 243 NWSYDQKGIVATVKISTSPPNRT-AWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAE 321 (595)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (595)
...| .++...+....+.+... .+..-...++.|.+|..+. ..+....+.... ....+.+.+.
T Consensus 169 ~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~W~~p~~~~-~~~g~~~~~~~~--------~~~~~~l~~~------ 231 (351)
T PRK11445 169 IRKY--VAIQQWFAEKHPVPFYSCIFDNEITDCYSWSISKDGY-FIFGGAYPMKDG--------RERFETLKEK------ 231 (351)
T ss_pred hhhE--EEEEEEecCCCCCCCcceEEeccCCCceEEEeCCCCc-EEecccccccch--------HHHHHHHHHH------
Confidence 2233 33333333222111111 1111123456677776442 222212111110 0111111110
Q ss_pred hhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccc--cccCCCEEEEccccccccCccchhhh
Q psy9964 322 LNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSV--RYIGPGCALLGDSAHRIHPLAGQGVN 399 (595)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~grvvLvGDAAH~~~P~~GqG~n 399 (595)
+.+.-..+ .+.+.. ...+++...... .+.++||+|||||||.++|++|||+|
T Consensus 232 -----------l~~~~~~~----------~~~~~~-----~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~ 285 (351)
T PRK11445 232 -----------LSAFGFQF----------GKPVKT-----EACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGIS 285 (351)
T ss_pred -----------HHhccccc----------cccccc-----ccccccCcccccccccCCCCEEEEEcccCccCCccCccHH
Confidence 00000000 000000 001111111112 23468999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhc
Q psy9964 400 LGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRE 438 (595)
Q Consensus 400 ~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~ 438 (595)
+|++||..|++.|.+. ....|+.|++.++.-
T Consensus 286 ~al~sa~~la~~l~~~--------~~~~~~~y~~~~~~~ 316 (351)
T PRK11445 286 YALDSARILSEVLNKQ--------PEKLNTAYWRKTRKL 316 (351)
T ss_pred HHHHhHHHHHHHHHhc--------ccchHHHHHHHHHHH
Confidence 9999999999999654 245799999987753
No 52
>PRK10015 oxidoreductase; Provisional
Probab=99.82 E-value=2.5e-18 Score=178.05 Aligned_cols=279 Identities=13% Similarity=0.128 Sum_probs=164.0
Q ss_pred cEEEEecCCCcceEEcCCccCc-cccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEE
Q psy9964 141 TSKVWGHSSDDLLEFNKAHNYQ-DRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIE 219 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~ 219 (595)
.+.+.+.++...+.|....... ...+|.+.|..|++.|.+.+++.|++++++++|+++.. .++.+.....++.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~---~~~~v~~v~~~~~~i~ 152 (429)
T PRK10015 76 KISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR---EGNKVTGVQAGDDILE 152 (429)
T ss_pred eEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE---eCCEEEEEEeCCeEEE
Confidence 3445454444444444332111 23489999999999999999989999999999999985 3345554444556899
Q ss_pred ecEEEEecCCCchhhhhcCCCCcccCCC-CeEEEEEEEeccC---------CCCceEEEEeC--CCC---cEEEeeCCCC
Q psy9964 220 CKLLLGTDGARSQVRNAMNVQYSNWSYD-QKGIVATVKISTS---------PPNRTAWQRFT--PSG---TVALLPLSDE 284 (595)
Q Consensus 220 adlvVgADG~~S~vR~~l~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~~--~~g---~~~~~p~~~~ 284 (595)
||+||+|||++|.+++.++......... ..++...+..+.. ......|..+. .++ ..++++ ..+
T Consensus 153 A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~-~~d 231 (429)
T PRK10015 153 ANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYT-NKD 231 (429)
T ss_pred CCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEE-cCC
Confidence 9999999999999999987643322211 1233333332211 01122233221 122 223334 344
Q ss_pred CeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceecccccee
Q psy9964 285 FSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAA 364 (595)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (595)
..++...+....... ...+...+.+.+... + .++.++..- +........
T Consensus 232 ~v~vGv~~~~~~~~~-~~~~~~~~l~~~~~~--------p-------~~~~~~~~~---------------~~~e~~~~~ 280 (429)
T PRK10015 232 SISLGLVCGLGDIAH-AQKSVPQMLEDFKQH--------P-------AIRPLISGG---------------KLLEYSAHM 280 (429)
T ss_pred cEEEEEEEehhhhcc-CCCCHHHHHHHHhhC--------h-------HHHHHhcCC---------------EEEEEeeEE
Confidence 555544332221111 122334444443211 0 011111100 000001112
Q ss_pred eecc-ccccccccCCCEEEEcccccccc--CccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhc-cc
Q psy9964 365 FPLG-FGHSVRYIGPGCALLGDSAHRIH--PLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRE-NL 440 (595)
Q Consensus 365 ~~~~-~~~~~~~~~grvvLvGDAAH~~~--P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~-~~ 440 (595)
.|.. ....++.+.++++|+||||..++ |++|+|+++||.++..+|+++.+++..++. +...|..|++..+.. +.
T Consensus 281 ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~--s~~~l~~Y~~~~~~~~~~ 358 (429)
T PRK10015 281 VPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADF--SASSLAQYKRELEQSCVM 358 (429)
T ss_pred cccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCC--ccccHHHHHHHHHHCHHH
Confidence 2322 11345677899999999999998 569999999999999999999888876654 567899999998866 44
Q ss_pred hHHHHHHHHHHhhcCC
Q psy9964 441 PVMLSIDLMYRVYRSS 456 (595)
Q Consensus 441 ~~~~~~~~~~~~~~~~ 456 (595)
+-....+.+..++..+
T Consensus 359 ~~l~~~~~~~~~~~~~ 374 (429)
T PRK10015 359 RDMQHFRKIPALMENP 374 (429)
T ss_pred HHHHHHhChHhhhcCc
Confidence 4455666666666554
No 53
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.82 E-value=6.2e-19 Score=164.17 Aligned_cols=238 Identities=17% Similarity=0.181 Sum_probs=157.6
Q ss_pred ecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEE-EeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhhHH
Q psy9964 220 CKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATV-KISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAK 298 (595)
Q Consensus 220 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 298 (595)
|.+.|.|||..|..|+.+.... ... .+.+++.. .....+........+.+.+++.+|+++.+.+++.+.++.+...
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~--~~v-~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P 78 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNK--PQV-RSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLP 78 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCC--Cce-eeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccC
Confidence 6899999999999999996322 222 12233322 2223344455555667889999999999999998887655221
Q ss_pred HHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCC
Q psy9964 299 ALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGP 378 (595)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 378 (595)
..+..++.+.+.+..-.. +.+.+.+.+.+.++ ..+....|....+.......
T Consensus 79 ---~~~~g~l~~yl~~~v~P~-----LP~~lr~~f~~al~--------------------~~rirsMPn~~lp~~~~~~~ 130 (276)
T PF08491_consen 79 ---SVSNGELKEYLREVVAPQ-----LPEELRPSFEKALE--------------------DGRIRSMPNSFLPASPNWKP 130 (276)
T ss_pred ---CccchHHHHHHHHHHHhh-----chHHHHHHHHHHhc--------------------cCCcceecccccCCCCCCCC
Confidence 112223333333221111 11112222222222 01112223322334444457
Q ss_pred CEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCCch
Q psy9964 379 GCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLT 458 (595)
Q Consensus 379 rvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~ 458 (595)
+++++|||++..+|++|+||+.|+.|+..|++.|.....-.+.....++++.|..+|++....+..++..++.+|..++.
T Consensus 131 G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~ 210 (276)
T PF08491_consen 131 GVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDD 210 (276)
T ss_pred CEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCH
Confidence 89999999999999999999999999999999997651111111135789999999999999889999999999999999
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q psy9964 459 PVKILGNLGFQLVNAVRPIKSILCDIFMRT 488 (595)
Q Consensus 459 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 488 (595)
....+|+..|...+.-+....--+.+++|.
T Consensus 211 ~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl 240 (276)
T PF08491_consen 211 YLKALRQGCFKYFQLGGECVSGPVALLSGL 240 (276)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchHHHhccC
Confidence 999999999998887766666666666664
No 54
>KOG1136|consensus
Probab=99.78 E-value=5.6e-19 Score=162.65 Aligned_cols=125 Identities=76% Similarity=1.385 Sum_probs=118.5
Q ss_pred CCceEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHH
Q psy9964 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYF 80 (595)
Q Consensus 1 m~~~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l 80 (595)
|+.|+++.||.++++|++|++|..++++|++|||..++..+++.++++.++.+.+.-.+-|+.|+|||.|.||+|.+|++
T Consensus 1 mp~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyf 80 (501)
T KOG1136|consen 1 MPEIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYF 80 (501)
T ss_pred CCcceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccch
Confidence 78899999999999999999999999999999999999999999999999999987678899999999999999999999
Q ss_pred HHhcCCCccEEEcCccchhhHHHHHhhhcccccccCCccccccch
Q psy9964 81 TEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQM 125 (595)
Q Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (595)
.+-.+|+.|||++-++..+.+.++++++++.++..++..+|+.+.
T Consensus 81 sEv~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~ 125 (501)
T KOG1136|consen 81 SEVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQD 125 (501)
T ss_pred HhhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHH
Confidence 999999999999999999999999999999999999888887443
No 55
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.77 E-value=4e-17 Score=167.99 Aligned_cols=246 Identities=15% Similarity=0.238 Sum_probs=156.4
Q ss_pred ccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEE-EEcCCcEEEecEEEEecCCCchhhhhcCCCCc
Q psy9964 164 RISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKI-KFESGESIECKLLLGTDGARSQVRNAMNVQYS 242 (595)
Q Consensus 164 ~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v-~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~ 242 (595)
..+|.++|..|+++|.+.+++.|++++.+++++++.. .++++.+ +..++.++++++||+|||++|.+++.++....
T Consensus 87 ~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~ 163 (396)
T COG0644 87 GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIR---EDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDR 163 (396)
T ss_pred CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEE---eCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCC
Confidence 5689999999999999999999999999999999997 3444444 44444689999999999999999999988711
Q ss_pred ccCCCCeEEEEEEEeccCCCCceEEE----EeCCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCch-HHHHHHHHhcC
Q psy9964 243 NWSYDQKGIVATVKISTSPPNRTAWQ----RFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGE-SFVDALNSEFN 317 (595)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 317 (595)
.+.....+..-....+. +.....+. ...+.|+.|++|..++..++........ ....+. +..+.+.....
T Consensus 164 ~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~----~~~~~~~~~l~~f~~~~~ 238 (396)
T COG0644 164 KPEDYAIGVKEVIEVPD-DGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD----PSLSPFLELLERFKEHPA 238 (396)
T ss_pred ChhheeEEeEEEEecCC-CCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC----cCCCchHHHHHHHHhCcc
Confidence 11111112222222221 11111221 1336789999999999888877654433 111111 22222221100
Q ss_pred CCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccchh
Q psy9964 318 KPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQG 397 (595)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG 397 (595)
. ...+. .- ..........|........++.++++||||||..++|++|.|
T Consensus 239 ~---------------~~~~~------------~~---~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~G 288 (396)
T COG0644 239 I---------------RKLLL------------GG---KILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEG 288 (396)
T ss_pred c---------------chhcc------------CC---ceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCc
Confidence 0 00000 00 000011122233221122267899999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHh
Q psy9964 398 VNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRV 452 (595)
Q Consensus 398 ~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~ 452 (595)
+..||.+|..+|+.+.++...+ ...|..|++.++..............+.
T Consensus 289 i~~A~~sg~~Aa~~i~~~~~~~-----~~~l~~Y~~~~~~~~~~~~~~~~~~~~~ 338 (396)
T COG0644 289 IRYAIKSGKLAAEAIAEALEGG-----EEALAEYERLLRKSLAREDLKSLRLLKL 338 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-----hhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999998886554 4578889998876655555444444443
No 56
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.77 E-value=1.8e-16 Score=164.52 Aligned_cols=255 Identities=14% Similarity=0.112 Sum_probs=153.3
Q ss_pred cccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCc
Q psy9964 163 DRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYS 242 (595)
Q Consensus 163 ~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~ 242 (595)
...+|.+.|..|++.|.+.+.+.|++|+++++|++++. .++.+.+...+|.+++||+||+|||++|.+++.++....
T Consensus 99 ~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~---~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~ 175 (428)
T PRK10157 99 SQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ---RDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKR 175 (428)
T ss_pred CCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE---eCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCC
Confidence 34679999999999999999989999999999999985 344554445677889999999999999999999886532
Q ss_pred ccCCCCeEEEEE--EEeccC---------CCCceEEEEeC-C-CC---cEEEeeCCCCCeEEEEecCHhhHHHHhCCCch
Q psy9964 243 NWSYDQKGIVAT--VKISTS---------PPNRTAWQRFT-P-SG---TVALLPLSDEFSSLVWATTPENAKALLQMPGE 306 (595)
Q Consensus 243 ~~~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~-~-~g---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (595)
. .....++... +..+.. ......+.... + .| ..++++ .++..++.+.+..+.... ...++.
T Consensus 176 ~-~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~-~~~~~svG~~~~~~~~~~-~~~~~~ 252 (428)
T PRK10157 176 V-KPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYT-NENTLSLGLVCGLHHLHD-AKKSVP 252 (428)
T ss_pred C-CCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEE-cCCeEEEEEEEehHHhcc-cCCCHH
Confidence 2 2222333222 222110 01112222211 1 11 223444 344555555444332111 112333
Q ss_pred HHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeec-cccccccccCCCEEEEcc
Q psy9964 307 SFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPL-GFGHSVRYIGPGCALLGD 385 (595)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~grvvLvGD 385 (595)
.+.+.+... + .++..+.. ...+ .......|. .....++.+.++++++||
T Consensus 253 ~~l~~~~~~-p--------------~v~~~~~~--------------~~~~-~~~~~~ip~~g~~~~~~~~~~g~llvGD 302 (428)
T PRK10157 253 QMLEDFKQH-P--------------AVAPLIAG--------------GKLV-EYSAHVVPEAGINMLPELVGDGVLIAGD 302 (428)
T ss_pred HHHHHHHhC-c--------------hHHHHhCC--------------CeEH-HHHhhHhhcCCcccCCceecCCeEEEec
Confidence 343333210 0 00001100 0000 000011121 111244567899999999
Q ss_pred ccccccC--ccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcC
Q psy9964 386 SAHRIHP--LAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRS 455 (595)
Q Consensus 386 AAH~~~P--~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~ 455 (595)
||..++| ++|+|+++||.++..+|+++.+++..++. +...|..|++..+..+-+-.+..+.+..++..
T Consensus 303 AAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~--s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~ 372 (428)
T PRK10157 303 AAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDF--SKQKLAEYRQHLESGPLRDMRMYQKLPAFLDN 372 (428)
T ss_pred ccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCc--chhhHHHHHHHHHHhHHHHHHHHhccHHHhcC
Confidence 9999998 69999999999999999999888876654 56789999998777653444444445555443
No 57
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.74 E-value=6.3e-16 Score=159.66 Aligned_cols=228 Identities=15% Similarity=0.216 Sum_probs=138.9
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCC
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSY 246 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~ 246 (595)
..++|..|++.|.+.+.+.|++++ ..++++++. ++++.+.|++.+|++++|++||+|||.+|.+|+........ +
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~--~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~--~ 154 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEA--DGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVG--F 154 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEe--cCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCce--E
Confidence 369999999999999988888885 668999885 23567888999998999999999999999776433111111 1
Q ss_pred CCeEEEEEEEeccCC--CCceEEEEeC--C--------CC--cEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHH
Q psy9964 247 DQKGIVATVKISTSP--PNRTAWQRFT--P--------SG--TVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDAL 312 (595)
Q Consensus 247 ~~~~~~~~~~~~~~~--~~~~~~~~~~--~--------~g--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (595)
+......+..+.++ .....+.-+. + .+ +++.+|.+++...+....... ....+.+.+.+.+
T Consensus 155 -q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~----~~~~~~~~~~~~l 229 (388)
T TIGR01790 155 -QVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLAD----RPALPRDRLRQRI 229 (388)
T ss_pred -EEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccC----CCCCCHHHHHHHH
Confidence 11111223333211 1111111111 1 12 567788877664432211000 0112222332222
Q ss_pred HHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccC
Q psy9964 313 NSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHP 392 (595)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P 392 (595)
.+ .++... ....++.......+|+.... .++.+|+++||||||.++|
T Consensus 230 ~~---------------------~~~~~g----------~~~~~i~~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P 276 (388)
T TIGR01790 230 LA---------------------RLNAQG----------WQIKTIEEEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHP 276 (388)
T ss_pred HH---------------------HHHHcC----------CeeeEEEeeeeEEEecccCC--CccCCCeeeeechhcCcCC
Confidence 22 111100 00011112233455664322 2378999999999999999
Q ss_pred ccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccch
Q psy9964 393 LAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLP 441 (595)
Q Consensus 393 ~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~ 441 (595)
.+|+|++.|+++|..||+.|.+++..+ .+.+++.|++..+++..+
T Consensus 277 ~tG~Gi~~al~~a~~la~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 277 TTGYSVARALSDAPGLAAAIAQALCQS----SELATAAWDGLWPTERRR 321 (388)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhccC----HHHHHHHHHHhchHHHHH
Confidence 999999999999999999998876544 467899998776665554
No 58
>KOG1298|consensus
Probab=99.71 E-value=1.8e-16 Score=150.07 Aligned_cols=303 Identities=14% Similarity=0.128 Sum_probs=195.1
Q ss_pred CcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCC--CceEEEEcCCc
Q psy9964 140 GTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPL--NNVKIKFESGE 216 (595)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~--~~v~v~~~dG~ 216 (595)
.++.++..+....+.|+......++.|..++...|.+-|++.+.. +|+++..| .|.++-. |++ .+|+.+.+.|+
T Consensus 115 ~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLle--e~gvvkGV~yk~k~ge 191 (509)
T KOG1298|consen 115 TGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLE--EEGVVKGVTYKNKEGE 191 (509)
T ss_pred eeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHh--ccCeEEeEEEecCCCc
Confidence 456677777778889998877778889999999999999999888 99988766 4666653 222 24445555565
Q ss_pred --EEEecEEEEecCCCchhhhhcCCCCcccCCCCeEEEEEE-EeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecC
Q psy9964 217 --SIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATV-KISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATT 293 (595)
Q Consensus 217 --~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 293 (595)
+..|.|-|-|||..|..||.+..+.... .. +.+++.+ .....+........+....+..+||++....++.+..+
T Consensus 192 e~~~~ApLTvVCDGcfSnlRrsL~~~~v~~-V~-S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~ 269 (509)
T KOG1298|consen 192 EVEAFAPLTVVCDGCFSNLRRSLCDPKVEE-VP-SYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVP 269 (509)
T ss_pred eEEEecceEEEecchhHHHHHHhcCCcccc-cc-hheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecC
Confidence 5678999999999999999995432221 11 1122221 22222333344444567778999999999888888776
Q ss_pred HhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccc
Q psy9964 294 PENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSV 373 (595)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (595)
....+...+ .+....+.....+..+ +++.+.+.+..+ .......|-...++.
T Consensus 270 g~~~Psi~~---gem~~~mk~~v~PqiP-----~~lR~~F~~av~--------------------~g~irsmpn~~mpa~ 321 (509)
T KOG1298|consen 270 GQKLPSIAN---GEMATYMKESVAPQIP-----EKLRESFLEAVD--------------------EGNIRSMPNSSMPAT 321 (509)
T ss_pred cccCCcccc---hhHHHHHHHhhCcCCC-----HHHHHHHHHHhh--------------------ccchhcCccccCCCC
Confidence 543222111 1111222222111111 111111111111 111122232233444
Q ss_pred cccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhh
Q psy9964 374 RYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVY 453 (595)
Q Consensus 374 ~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~ 453 (595)
.....+++|+|||...-+|.+|.||..|+.|...|-+.|.....-.+.....+.+..|...|+|....+..++..+.++|
T Consensus 322 ~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf 401 (509)
T KOG1298|consen 322 LNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVF 401 (509)
T ss_pred cCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHh
Confidence 55567899999999999999999999999999999999854321111111245788899999999888889999999999
Q ss_pred cC-CchHHHHHHHHHHHhhccCh
Q psy9964 454 RS-SLTPVKILGNLGFQLVNAVR 475 (595)
Q Consensus 454 ~~-~~~~~~~~r~~~~~~~~~~~ 475 (595)
.. ++.....+|...+..++.-.
T Consensus 402 ~as~dea~~~mr~gCfdYl~~GG 424 (509)
T KOG1298|consen 402 VASTDEARKAMRKGCFDYLKRGG 424 (509)
T ss_pred cCCchHHHHHHHHHHHHHHhcCC
Confidence 76 66667777877776665433
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.68 E-value=2.3e-15 Score=156.35 Aligned_cols=246 Identities=18% Similarity=0.299 Sum_probs=153.3
Q ss_pred ccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhc-CCC
Q psy9964 162 QDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAM-NVQ 240 (595)
Q Consensus 162 ~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l-~~~ 240 (595)
...++|.++|..|++.|++.+.+.|++++.+ +|+++... +++....|+.++|++++||++|.|.|.+|.+.+.. +.+
T Consensus 144 ~~~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~-~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~ 221 (454)
T PF04820_consen 144 PFNYAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELD-EDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVG 221 (454)
T ss_dssp TSS-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE--TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EE
T ss_pred CCCeeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEc-CCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCC
Confidence 4678999999999999999999999999988 48888763 22223578999999999999999999999988774 322
Q ss_pred CcccCCCC---eEEEEEEEeccCCCCceEEEEeCCCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcC
Q psy9964 241 YSNWSYDQ---KGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFN 317 (595)
Q Consensus 241 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (595)
........ .++...++........+. ....+.||+|.+|+.++..+ .+.++.... ++++..+.+.+.+.
T Consensus 222 ~~~~~~~L~~d~av~~~~~~~~~~~~~T~-~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~~~A~~~l~~~l~ 293 (454)
T PF04820_consen 222 FRDWSDWLPNDRAVAVQVPNEDPPEPYTR-STAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SDDEAEAELLAYLG 293 (454)
T ss_dssp EEEETTTCEEEEEEEEEEE-SSCTTSSEE-EEEESSEEEEEEEESSEEEE-EEEEETTTS------HHHHHHHHHHHHHT
T ss_pred CccccccccccEEEEEecCcCCCCCCcee-EEecCCceEEEccCCCcceE-EEEeccccC------CHHHHHHHHHHhcc
Confidence 22222111 344444443332222222 33458899999999998766 333332211 11222223322221
Q ss_pred CCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccchh
Q psy9964 318 KPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQG 397 (595)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG 397 (595)
... . ..+ ...++......+...+|+++|||||..++|+.++|
T Consensus 294 ~~~-----------------~----------~~~-----------~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StG 335 (454)
T PF04820_consen 294 GSP-----------------E----------AEP-----------RHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTG 335 (454)
T ss_dssp CHC-----------------T----------TSC-----------EEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHH
T ss_pred hhh-----------------h----------cch-----------hhhcccccchhhcccCCEEEEcchhhccCcccccc
Confidence 100 0 000 12233333355556788999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHHHHhhcCC-chHHH
Q psy9964 398 VNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSS-LTPVK 461 (595)
Q Consensus 398 ~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~ 461 (595)
+.+++..+..|++.|.. ... .+.+++.|++..+.....+.......+...... .+.++
T Consensus 336 I~la~~aa~~l~~~l~~----~~~--~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~r~ds~FW~ 394 (454)
T PF04820_consen 336 IHLALSAAEALAEALPD----DDF--SPAALDRYNRRMRREYERIRDFISLHYQLSRRRDSPFWR 394 (454)
T ss_dssp HHHHHHHHHHHHHTHHC----TTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHS-SSHHHH
T ss_pred HHHHHHHHHHHHHhccc----CCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHH
Confidence 99999988887777743 222 477999999999988888888777777654333 34433
No 60
>PLN02697 lycopene epsilon cyclase
Probab=99.59 E-value=5e-13 Score=139.99 Aligned_cols=234 Identities=16% Similarity=0.192 Sum_probs=141.9
Q ss_pred eeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceE-EEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCC
Q psy9964 168 IVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVK-IKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSY 246 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~-v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~ 246 (595)
.++|..|++.|.+++.+.|+++ ++++|++++. .++++. +++.+|.+++|++||+|||.+|. +.+........+
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~---~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~ 261 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITE---ASDGLRLVACEDGRVIPCRLATVASGAASG--RLLQYEVGGPRV 261 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEE---cCCcEEEEEEcCCcEEECCEEEECCCcChh--hhhccccCCCCc
Confidence 5999999999999998889998 7889999985 344544 46678899999999999999993 333322111211
Q ss_pred C-CeEEEEEEEeccCCC--CceEEEEeC-------------CCCcEEEeeCCCCCeEE-EEec-CHhhHHHHhCCCchHH
Q psy9964 247 D-QKGIVATVKISTSPP--NRTAWQRFT-------------PSGTVALLPLSDEFSSL-VWAT-TPENAKALLQMPGESF 308 (595)
Q Consensus 247 ~-~~~~~~~~~~~~~~~--~~~~~~~~~-------------~~g~~~~~p~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 308 (595)
. +......++...++. +...+.-|. ..++++.+|++++...+ ...+ ... ..+.+.+
T Consensus 262 ~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~------~l~~~~l 335 (529)
T PLN02697 262 CVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKD------AMPFDLL 335 (529)
T ss_pred ccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccCC------CCCHHHH
Confidence 1 222223333332211 111110000 11356777888776555 2211 111 1122222
Q ss_pred HHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccc
Q psy9964 309 VDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAH 388 (595)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH 388 (595)
.+.+... +... .-.+.++........|+.. ..+.. .++++++||||.
T Consensus 336 ~~~L~~~---------------------l~~~----------Gi~~~~i~~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG 382 (529)
T PLN02697 336 KKRLMSR---------------------LETM----------GIRILKTYEEEWSYIPVGG-SLPNT-EQKNLAFGAAAS 382 (529)
T ss_pred HHHHHHH---------------------HHhC----------CCCcceEEEEEeeeecCCC-CCccc-CCCeeEeehhhc
Confidence 2222221 1100 0001122223344556643 33333 678999999999
Q ss_pred cccCccchhhhhchHHHHHHHHHHHHhhhCCC-------CCCChHHHHHHHHHhhhccchHHHHH
Q psy9964 389 RIHPLAGQGVNLGFGDIACLVQLSAESVSNGY-------PIGHPESLTKYESIRQRENLPVMLSI 446 (595)
Q Consensus 389 ~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~-------~~~~~~~L~~Y~~~r~~~~~~~~~~~ 446 (595)
.++|.+|.|+..++.+|..+|+.+++++..+. ...+..+++.|++.+.....+.....
T Consensus 383 ~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~ 447 (529)
T PLN02697 383 MVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFF 447 (529)
T ss_pred CCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHH
Confidence 99999999999999999999999999887664 11257889999998877655554443
No 61
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.54 E-value=3.5e-14 Score=138.66 Aligned_cols=114 Identities=35% Similarity=0.729 Sum_probs=94.2
Q ss_pred eEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHh
Q psy9964 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEM 83 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 83 (595)
+.+++||+..++|++|++|.+.+..+|+|||.+....... .+.++.--.+.+..+|+|++||+|.||+|-+|+|.+
T Consensus 181 vRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~---~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lfk- 256 (637)
T COG1782 181 VRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGED---AFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFK- 256 (637)
T ss_pred EEEEeeccchhccceeEEEecCCceEEEeccccCCCCccc---cCcccccccccccccceEEEeecccccccchhhhhh-
Confidence 6799999999999999999999999999999875433222 234444444444689999999999999999999999
Q ss_pred cCCCccEEEcCccchhhHHHHHhhhcccccccCCcccc
Q psy9964 84 FGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFF 121 (595)
Q Consensus 84 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 121 (595)
++|+.||||+.++...+-.+..++.+++...+...+|.
T Consensus 257 Ygy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~ 294 (637)
T COG1782 257 YGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYE 294 (637)
T ss_pred cCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 89999999999999999888888888876666666664
No 62
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.51 E-value=3e-12 Score=129.97 Aligned_cols=225 Identities=10% Similarity=0.080 Sum_probs=126.8
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCC
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSY 246 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~ 246 (595)
.+|+|.+|++.|.+.+.. + |+++.+|++++. ++|++ +||++++||+||+|||.+|.-.... .+
T Consensus 84 ~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~~-----~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~-------~~ 146 (370)
T TIGR01789 84 RSMTSTRFHEGLLQAFPE-G--VILGRKAVGLDA-----DGVDL--APGTRINARSVIDCRGFKPSAHLKG-------GF 146 (370)
T ss_pred eEEEHHHHHHHHHHhhcc-c--EEecCEEEEEeC-----CEEEE--CCCCEEEeeEEEECCCCCCCccccc-------ee
Confidence 589999999999887753 3 777999999952 34544 7999999999999999998522211 11
Q ss_pred CCeEEEEEEEeccCCC--CceEEEE-eC-CCC-cE-EEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCc
Q psy9964 247 DQKGIVATVKISTSPP--NRTAWQR-FT-PSG-TV-ALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPA 320 (595)
Q Consensus 247 ~~~~~~~~~~~~~~~~--~~~~~~~-~~-~~g-~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (595)
+..+...++...+.. ......+ +. .++ .| +.+|++++..-+-.+...+ ...++.+.+.+.+...
T Consensus 147 -Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~----~~~l~~~~l~~~l~~~----- 216 (370)
T TIGR01789 147 -QVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD----DPLLDRNALSQRIDQY----- 216 (370)
T ss_pred -eEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC----CCCCCHHHHHHHHHHH-----
Confidence 111111223333211 1111111 11 233 33 3368777764332211110 0112333333333221
Q ss_pred chhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeecccc--cccccc-CCCEEEEccccccccCccchh
Q psy9964 321 ELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFG--HSVRYI-GPGCALLGDSAHRIHPLAGQG 397 (595)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~grvvLvGDAAH~~~P~~GqG 397 (595)
+... .-....+.......+|+... ....|. .++|+++|||||.++|.+|+|
T Consensus 217 ----------------~~~~----------g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg 270 (370)
T TIGR01789 217 ----------------ARAN----------GWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYS 270 (370)
T ss_pred ----------------HHHh----------CCCceEEEEeeeeEEeeecCCCcccccccCCceeeeeccccccccccccc
Confidence 1100 00011122223345676332 111222 456999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHhhhccchHHHHHHHH
Q psy9964 398 VNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLM 449 (595)
Q Consensus 398 ~n~Al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~ 449 (595)
++.|++||..|++++.. .+.+ ..+++..|...|+++.......-+.+
T Consensus 271 ~~~a~~~a~~la~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (370)
T TIGR01789 271 LPVAVENADALAAQPDL---SSEQ--LAAFIDSRARRHWSKTGYYRLLNRML 317 (370)
T ss_pred HHHHHHHHHHHHhccCc---Cccc--hhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999998841 1212 34568999999887777554444333
No 63
>PLN02463 lycopene beta cyclase
Probab=99.44 E-value=3.1e-11 Score=124.77 Aligned_cols=207 Identities=16% Similarity=0.196 Sum_probs=125.0
Q ss_pred eeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCCC
Q psy9964 168 IVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYD 247 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~ 247 (595)
.++|.+|++.|.+++.+.|++++ ..+|++++. .++++.|++++|++++||+||+|||.+|++++.-.. ....+
T Consensus 110 ~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~---~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~~--~~~g~- 182 (447)
T PLN02463 110 RVNRKKLKSKMLERCIANGVQFH-QAKVKKVVH---EESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDKP--FNPGY- 182 (447)
T ss_pred eEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEE---cCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCCC--CCccc-
Confidence 57999999999999988899986 569999986 566789999999999999999999999998753211 11111
Q ss_pred CeEEEEEEEeccCCCCc--eE---EE--EeC--------C---CCcEEEeeCCCCCeEEEEec--CHhhHHHHhCCCchH
Q psy9964 248 QKGIVATVKISTSPPNR--TA---WQ--RFT--------P---SGTVALLPLSDEFSSLVWAT--TPENAKALLQMPGES 307 (595)
Q Consensus 248 ~~~~~~~~~~~~~~~~~--~~---~~--~~~--------~---~g~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 307 (595)
+.++...++...++... .. |. ... . .++++.+|.+++...+-.+. ... ..+.+.
T Consensus 183 Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~------~~~~~~ 256 (447)
T PLN02463 183 QVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARP------GLPMDD 256 (447)
T ss_pred eeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCC------CCCHHH
Confidence 11222222222111111 00 00 000 0 23567788888763322210 000 111122
Q ss_pred HHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEcccc
Q psy9964 308 FVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSA 387 (595)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAA 387 (595)
..+.+.+. ++.+. -.+.++.......+|+... .+ ...+|++++||||
T Consensus 257 lk~~L~~~---------------------l~~~G----------i~~~~i~~~E~~~IPmg~~-~~-~~~~~~~~~G~aa 303 (447)
T PLN02463 257 IQERMVAR---------------------LRHLG----------IKVKSVEEDEKCVIPMGGP-LP-VIPQRVLGIGGTA 303 (447)
T ss_pred HHHHHHHH---------------------HHHCC----------CCcceeeeeeeeEeeCCCC-CC-CCCCCEEEecchh
Confidence 22222211 11000 0011122223344566332 22 3467999999999
Q ss_pred ccccCccchhhhhchHHHHHHHHHHHHhhhCCC
Q psy9964 388 HRIHPLAGQGVNLGFGDIACLVQLSAESVSNGY 420 (595)
Q Consensus 388 H~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~ 420 (595)
..++|.+|.|+..++..|..+|+++.+++..+.
T Consensus 304 g~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~ 336 (447)
T PLN02463 304 GMVHPSTGYMVARTLAAAPIVADAIVEYLGSSR 336 (447)
T ss_pred cCcCCCccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999887554
No 64
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.43 E-value=2.4e-13 Score=144.89 Aligned_cols=104 Identities=36% Similarity=0.733 Sum_probs=80.6
Q ss_pred ceEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHH
Q psy9964 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTE 82 (595)
Q Consensus 3 ~~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~ 82 (595)
.|++++||+.+++|+|||+|..++..+|||||.......... +..+....+.+.++++|||||+|.||+|++++|.+
T Consensus 174 ~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~---~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k 250 (630)
T TIGR03675 174 WVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNA---YPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFK 250 (630)
T ss_pred eEEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhh---cccccccCCCHHHCcEEEECCCCHHHHhhHHHHHH
Confidence 389999999999999999999999999999997643211111 12222223335789999999999999999999987
Q ss_pred hcCCCccEEEcCccchhhHHHHHhhhcc
Q psy9964 83 MFGYAGPIYMTHPTKAIAPILLEDFRKI 110 (595)
Q Consensus 83 ~~~~~~~v~~~~~~~~~~~~~l~~~~~~ 110 (595)
.+++.+||++.++..++...+.++...
T Consensus 251 -~g~~gpIY~T~pT~~l~~~ll~D~~~i 277 (630)
T TIGR03675 251 -YGYDGPVYCTPPTRDLMTLLQLDYIDV 277 (630)
T ss_pred -hCCCCceeecHHHHHHHHHHHHHHHHH
Confidence 456789999999988887776665443
No 65
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.40 E-value=4.8e-13 Score=138.39 Aligned_cols=102 Identities=31% Similarity=0.566 Sum_probs=85.6
Q ss_pred CceEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCC----CCCCCCccccccCCCCCCCccEEEeCCCChhhcCCc
Q psy9964 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHD----DRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGAL 77 (595)
Q Consensus 2 ~~~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~----~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~ 77 (595)
++++++.+|+.+++|+|||+++.+++.+++|||....... +..++++.++.++. .++++|||||+|.||+|++
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~---~kvkgI~lTHgHeDHIGai 83 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENK---DKVKGIFLTHGHEDHIGAL 83 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhcc---ccceEEEecCCchhhccch
Confidence 4699999999999999999999999999999998754322 22345566777765 6999999999999999999
Q ss_pred HHHHHhcCCCccEEEcCccchhhHHHHHhh
Q psy9964 78 PYFTEMFGYAGPIYMTHPTKAIAPILLEDF 107 (595)
Q Consensus 78 ~~l~~~~~~~~~v~~~~~~~~~~~~~l~~~ 107 (595)
|++..+.. .+|||++..+..++..++++.
T Consensus 84 p~ll~~~~-~~piy~s~lt~~Li~~k~~~~ 112 (555)
T COG0595 84 PYLLKQVL-FAPIYASPLTAALIKEKLKEH 112 (555)
T ss_pred HHHHhcCC-cCceecCHhhHHHHHHHHHHh
Confidence 99999654 399999999999988887744
No 66
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.35 E-value=2.1e-12 Score=133.84 Aligned_cols=98 Identities=29% Similarity=0.526 Sum_probs=75.4
Q ss_pred eEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCC----CCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHH
Q psy9964 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHD----DRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPY 79 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~----~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~ 79 (595)
++++++|+..++|+|||+|..++..+|||||....... +..++.+.++.+.. .++++||+||+|.||++|+++
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~---~~i~~I~iTH~H~DHiggl~~ 77 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQ---DKVKGIFITHGHEDHIGAVPY 77 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhcc---ccCCEEEECCCChHHhCcHHH
Confidence 57999999999999999999999999999997643111 11223445555433 689999999999999999999
Q ss_pred HHHhcCCCccEEEcCccchhhHHHHH
Q psy9964 80 FTEMFGYAGPIYMTHPTKAIAPILLE 105 (595)
Q Consensus 80 l~~~~~~~~~v~~~~~~~~~~~~~l~ 105 (595)
+.+.++ ..+||++..+...+...+.
T Consensus 78 l~~~~~-~~~Vy~~~~t~~~l~~~~~ 102 (422)
T TIGR00649 78 LFHTVG-FPPIYGTPLTIALIKSKIK 102 (422)
T ss_pred HHHhCC-CCeEEeCHHHHHHHHHHHH
Confidence 988543 3689999998776665443
No 67
>PRK00055 ribonuclease Z; Reviewed
Probab=99.30 E-value=2.5e-12 Score=125.85 Aligned_cols=90 Identities=30% Similarity=0.425 Sum_probs=69.2
Q ss_pred eEEEEecCCCCC-----CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcH
Q psy9964 4 IKVTPLGAGQDV-----GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALP 78 (595)
Q Consensus 4 ~~i~~lg~~~~~-----~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~ 78 (595)
|+|++||+++.. +++|++|..++..+|||||.+. ...+.+.++++.++++||+||.|.||++|++
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~----------~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~ 71 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGT----------QRQLLKTGIKPRKIDKIFITHLHGDHIFGLP 71 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHH----------HHHHHHcCCCHHHCCEEEEeCCCchhhCcHH
Confidence 799999999865 3689999988889999999652 2344445566688999999999999999999
Q ss_pred HHHHhc-----CCCccEEEcCccchhhHHH
Q psy9964 79 YFTEMF-----GYAGPIYMTHPTKAIAPIL 103 (595)
Q Consensus 79 ~l~~~~-----~~~~~v~~~~~~~~~~~~~ 103 (595)
.+.... ...++||++......+...
T Consensus 72 ~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~ 101 (270)
T PRK00055 72 GLLSTRSLSGRTEPLTIYGPKGIKEFVETL 101 (270)
T ss_pred HHHHHhhhcCCCceEEEECCccHHHHHHHH
Confidence 887532 1246799888766555443
No 68
>KOG3855|consensus
Probab=99.23 E-value=1.1e-11 Score=119.40 Aligned_cols=87 Identities=45% Similarity=0.780 Sum_probs=75.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCccc-CCCCCCCCCCchhhccHhHHHHHHHcCCccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSL-HFSKSSSYSNRVSSINSSSKQLFETIGAWDHIEST 586 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~-~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~ 586 (595)
...+||+||||||||+++|++|+.++.++.++|+|+|.+..... .+....+|..|++++++.++.+|+.+|+|+.+.+.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~ 113 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHD 113 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence 34799999999999999999999999999999999998843211 12233678999999999999999999999999999
Q ss_pred cccccccc
Q psy9964 587 RTCTVDNM 594 (595)
Q Consensus 587 ~~~~~~~~ 594 (595)
|.+|+++|
T Consensus 114 R~~~~~~~ 121 (481)
T KOG3855|consen 114 RYQKFSRM 121 (481)
T ss_pred ccccccce
Confidence 99999887
No 69
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.18 E-value=3.3e-11 Score=125.09 Aligned_cols=80 Identities=35% Similarity=0.545 Sum_probs=63.7
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
|..+||+||||||+|+++|++|++. |++|+|+|+.+.... .....+.|+++|+++++++|++||+|+.+.+..
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~----G~~v~viE~~~~~~~---~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~ 74 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKES----DLRIAVIEGQLPEEA---LNELPDVRVSALSRSSEHILRNLGAWQGIEARR 74 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhC----CCEEEEEcCCCCccc---ccCCCCcceecccHHHHHHHHhCCchhhhhhhh
Confidence 3468999999999999999999998 999999998632110 011236899999999999999999999997644
Q ss_pred ccccccc
Q psy9964 588 TCTVDNM 594 (595)
Q Consensus 588 ~~~~~~~ 594 (595)
..|+..+
T Consensus 75 ~~~~~~~ 81 (405)
T PRK08850 75 AAPYIAM 81 (405)
T ss_pred CCcccEE
Confidence 5666543
No 70
>PRK08013 oxidoreductase; Provisional
Probab=99.17 E-value=3.7e-11 Score=124.36 Aligned_cols=81 Identities=32% Similarity=0.607 Sum_probs=64.9
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
|+.+||+||||||+|+++|++|++. |++|+|+|+.+.... ......+.|+.++++.++++|+++|+|+.+.+..
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~----G~~v~viE~~~~~~~--~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~ 74 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGS----GLRVAVLEQRVPEPL--AADAPPALRVSAINAASEKLLTRLGVWQDILARR 74 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhC----CCEEEEEeCCCCccc--ccCCCCCceeeecchhHHHHHHHcCCchhhhhhc
Confidence 3468999999999999999999998 999999999875321 1112235699999999999999999999987644
Q ss_pred ccccccc
Q psy9964 588 TCTVDNM 594 (595)
Q Consensus 588 ~~~~~~~ 594 (595)
..|++.+
T Consensus 75 ~~~~~~~ 81 (400)
T PRK08013 75 ASCYHGM 81 (400)
T ss_pred CccccEE
Confidence 5566543
No 71
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.17 E-value=3.8e-11 Score=123.62 Aligned_cols=79 Identities=37% Similarity=0.695 Sum_probs=62.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccccccccc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRT 588 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~ 588 (595)
..+||+||||||+|+++|++|++. |++|+|+|+.+... ......++.|+++|++.++++|++||+|+.+.+...
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~----G~~v~l~E~~~~~~--~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~ 75 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQ----GRSVAVIEGGEPKA--FEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRV 75 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC----CCcEEEEcCCCccc--CCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhC
Confidence 357999999999999999999998 99999999875321 111112366889999999999999999999865445
Q ss_pred ccccc
Q psy9964 589 CTVDN 593 (595)
Q Consensus 589 ~~~~~ 593 (595)
.|+..
T Consensus 76 ~~~~~ 80 (384)
T PRK08849 76 CPYKR 80 (384)
T ss_pred Cccce
Confidence 56544
No 72
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.15 E-value=3e-11 Score=119.87 Aligned_cols=91 Identities=26% Similarity=0.358 Sum_probs=69.4
Q ss_pred EEEEecCCCCC-----CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHH
Q psy9964 5 KVTPLGAGQDV-----GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPY 79 (595)
Q Consensus 5 ~i~~lg~~~~~-----~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~ 79 (595)
+|++||+++.. +.+|++|+.++..+|||||.+. ...+.+.++++.++++|||||.|.||++|++.
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~----------~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~ 70 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGT----------QRQMLRSGISPMKIDRIFITHLHGDHILGLPG 70 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHH----------HHHHHHcCCCHHHCcEEEEECCchhhhcChHH
Confidence 58899999864 3489999988889999999752 23454555556789999999999999999998
Q ss_pred HHHhcC-----CCccEEEcCccchhhHHHHH
Q psy9964 80 FTEMFG-----YAGPIYMTHPTKAIAPILLE 105 (595)
Q Consensus 80 l~~~~~-----~~~~v~~~~~~~~~~~~~l~ 105 (595)
+..... ..++||++......+...+.
T Consensus 71 l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~ 101 (299)
T TIGR02651 71 LLSTMSFQGRKEPLTIYGPPGIKEFIETSLR 101 (299)
T ss_pred HHHhhccCCCCceEEEECCccHHHHHHHHHH
Confidence 875321 24679999887766655443
No 73
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.14 E-value=4e-11 Score=109.41 Aligned_cols=75 Identities=28% Similarity=0.347 Sum_probs=62.1
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEEEcCcc
Q psy9964 17 RSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPT 96 (595)
Q Consensus 17 ~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~ 96 (595)
+-+++|+.++..||||||.... ..+.-++..++++.+|++++|||.|+||+||++++.+.....++||+++..
T Consensus 22 GfS~LVE~~~~riLFDtG~~~~-------~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~a 94 (259)
T COG1237 22 GFSALVEDEGTRILFDTGTDSD-------VLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDA 94 (259)
T ss_pred ceEEEEEcCCeEEEEeCCCCcH-------HHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHH
Confidence 4789999999999999996422 344666778999999999999999999999999998866457899998875
Q ss_pred ch
Q psy9964 97 KA 98 (595)
Q Consensus 97 ~~ 98 (595)
..
T Consensus 95 f~ 96 (259)
T COG1237 95 FK 96 (259)
T ss_pred Hh
Confidence 44
No 74
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.13 E-value=6.4e-11 Score=122.35 Aligned_cols=75 Identities=21% Similarity=0.475 Sum_probs=64.1
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccc
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIES 585 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~ 585 (595)
|.+..+||+||||||+|+++|+.|++. |++|+|+|+.+... +.|+.++++.++++|+++|+|+.+.+
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~----G~~v~liE~~~~~~---------~~r~~~l~~~s~~~l~~lgl~~~~~~ 69 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARA----GASVALVAPEPPYA---------DLRTTALLGPSIRFLERLGLWARLAP 69 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcC----CCeEEEEeCCCCCC---------CcchhhCcHHHHHHHHHhCchhhhHh
Confidence 456778999999999999999999998 99999999986321 56899999999999999999999876
Q ss_pred ccccccccc
Q psy9964 586 TRTCTVDNM 594 (595)
Q Consensus 586 ~~~~~~~~~ 594 (595)
.+.|++.+
T Consensus 70 -~~~~~~~~ 77 (388)
T PRK07494 70 -HAAPLQSM 77 (388)
T ss_pred -hcceeeEE
Confidence 55566543
No 75
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.13 E-value=5.9e-11 Score=121.62 Aligned_cols=75 Identities=24% Similarity=0.362 Sum_probs=62.4
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccccccccccc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCT 590 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~~ 590 (595)
+||+||||||+|+++|++|++. |++|+|+|+.+.... ....++|+++|++.++++|+++|+|+.+.+ ...|
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~----G~~v~l~E~~~~~~~----~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~-~~~~ 72 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK----GIKTTIFESKSVKSP----EFFKDIRTTALTPHSKNFLFSIDIWEELEK-FVAE 72 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC----CCeEEEecCCCCCCC----ccCcCceEEEeCHHHHHHHHHCCcHHHHHh-hcCC
Confidence 5899999999999999999998 999999998753211 122368999999999999999999999865 5667
Q ss_pred cccc
Q psy9964 591 VDNM 594 (595)
Q Consensus 591 ~~~~ 594 (595)
+..+
T Consensus 73 ~~~~ 76 (374)
T PRK06617 73 MQDI 76 (374)
T ss_pred CcEE
Confidence 6654
No 76
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.12 E-value=8.7e-11 Score=122.03 Aligned_cols=80 Identities=31% Similarity=0.672 Sum_probs=62.7
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTC 589 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~ 589 (595)
.+||+||||||+|+++|++|++. |++|+|+|+.+...........+++|+.++++.++++|++||+|+.+.+....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~ 77 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS----GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRAS 77 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC----CCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCc
Confidence 47999999999999999999998 99999999886311101111234679999999999999999999998653455
Q ss_pred cccc
Q psy9964 590 TVDN 593 (595)
Q Consensus 590 ~~~~ 593 (595)
|+..
T Consensus 78 ~~~~ 81 (405)
T PRK05714 78 PYSE 81 (405)
T ss_pred ccee
Confidence 6544
No 77
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.11 E-value=4.2e-08 Score=100.29 Aligned_cols=201 Identities=14% Similarity=0.167 Sum_probs=124.3
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcCCCCcccCC
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSY 246 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~ 246 (595)
.+|+|..|++.|.+.+.. +..+..+.+|++|+. .++.+.|++.||++++|++||+|+|..|...+..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~-~~~~~~~~~V~~i~~---~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~~------- 150 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAA-GGVIRLNARVTSIEE---TGDGVLVVLADGRTIRARVVVDARGPSSPKARPLGL------- 150 (374)
T ss_pred EEEEHHHHHHHHHHHhhh-CCeEEEccEEEEEEe---cCceEEEEECCCCEEEeeEEEECCCccccccccccc-------
Confidence 489999999999999984 446788999999995 556789999999999999999999977772222111
Q ss_pred CCeEEEEEEEeccCC--C-CceEEEEeC-----CCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCC
Q psy9964 247 DQKGIVATVKISTSP--P-NRTAWQRFT-----PSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNK 318 (595)
Q Consensus 247 ~~~~~~~~~~~~~~~--~-~~~~~~~~~-----~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (595)
+..+...++...+. . ......+-. +...++.+|+++++..+-.+.-... ...+.+.+.+.+.+..
T Consensus 151 -Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~----~~~~~~~~~~~l~~~l-- 223 (374)
T PF05834_consen 151 -QHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPR----PALPEEELKARLRRYL-- 223 (374)
T ss_pred -ceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCC----CCCCHHHHHHHHHHHH--
Confidence 12222233333331 1 112222111 1235667798888755532221111 0122333333332221
Q ss_pred CcchhhHHHHhhhhhhchhhhccccCCCcccCCCccceeccccceeeeccccccccccCCCEEEEccccccccCccchhh
Q psy9964 319 PAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGV 398 (595)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~ 398 (595)
+.. .-...++.......+|+..........++++.+|+||..+.|.+|-++
T Consensus 224 -------------------~~~----------g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~ 274 (374)
T PF05834_consen 224 -------------------ERL----------GIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSF 274 (374)
T ss_pred -------------------HHc----------CCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHH
Confidence 100 000112223345567774334444456779999999999999999999
Q ss_pred hhchHHHHHHHHHHHH
Q psy9964 399 NLGFGDIACLVQLSAE 414 (595)
Q Consensus 399 n~Al~Da~~La~~L~~ 414 (595)
..++..|..+|+.|.+
T Consensus 275 ~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 275 ARIQRQADAIADALAK 290 (374)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988888865
No 78
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.10 E-value=1e-10 Score=122.33 Aligned_cols=84 Identities=45% Similarity=0.758 Sum_probs=62.7
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCC----CCCCCCCCchhhccHhHHHHHHHcCCccccccc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHF----SKSSSYSNRVSSINSSSKQLFETIGAWDHIEST 586 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~----~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~ 586 (595)
|||+||||||+|+++|++|++.+...|++|+|+|+.+...... .....+++|+++|++.++++|+++|+|+.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 6999999999999999999982111299999999964222100 011125789999999999999999999999764
Q ss_pred cccccccc
Q psy9964 587 RTCTVDNM 594 (595)
Q Consensus 587 ~~~~~~~~ 594 (595)
...|+..+
T Consensus 81 ~~~~~~~~ 88 (437)
T TIGR01989 81 RIQPFGRM 88 (437)
T ss_pred cCCceeeE
Confidence 45565543
No 79
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.10 E-value=7.8e-11 Score=116.68 Aligned_cols=89 Identities=22% Similarity=0.250 Sum_probs=66.7
Q ss_pred EEEecCCCCC-----CCcEEEEEEC----CeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCC
Q psy9964 6 VTPLGAGQDV-----GRSCILVSMG----GKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGA 76 (595)
Q Consensus 6 i~~lg~~~~~-----~~~~~~i~~~----~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g 76 (595)
+++||+++.. +.+||+|+.+ +..+|||||.+.. ..+.+.++++.+|++|||||.|.||++|
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~----------~~l~~~~i~~~~id~IfiTH~H~DHi~G 70 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ----------HQLLHTAFNPGKLDKIFISHLHGDHLFG 70 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHH----------HHHHHhCCCHHHCcEEEEeCCChhhcCC
Confidence 4789998755 3478999753 3689999997632 4555666777899999999999999999
Q ss_pred cHHHHHhc-----CCCccEEEcCccchhhHHHH
Q psy9964 77 LPYFTEMF-----GYAGPIYMTHPTKAIAPILL 104 (595)
Q Consensus 77 ~~~l~~~~-----~~~~~v~~~~~~~~~~~~~l 104 (595)
++.|.... ...++||++......+...+
T Consensus 71 l~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~ 103 (303)
T TIGR02649 71 LPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL 103 (303)
T ss_pred HHHHHHHHHhcCCCCCeEEEechhHHHHHHHHH
Confidence 99876431 12468999998766655543
No 80
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.10 E-value=1.1e-10 Score=113.65 Aligned_cols=89 Identities=28% Similarity=0.446 Sum_probs=69.9
Q ss_pred eEEEEecCCCCC-----CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcH
Q psy9964 4 IKVTPLGAGQDV-----GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALP 78 (595)
Q Consensus 4 ~~i~~lg~~~~~-----~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~ 78 (595)
|++++||+++.+ ..++++|+.++..+|||||.++. ..+...++.+.+|++|||||.|.||+.|++
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~----------~~l~~~~~~~~~i~~IfITH~H~DHi~gL~ 71 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQ----------HQLLRAGLPPRKIDAIFITHLHGDHIAGLP 71 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHH----------HHHHHhcCChhhccEEEeeccccchhcCcH
Confidence 799999999874 34788998888899999998643 566677777779999999999999999999
Q ss_pred HHHHhcCC-----CccEEEcCccchhhHH
Q psy9964 79 YFTEMFGY-----AGPIYMTHPTKAIAPI 102 (595)
Q Consensus 79 ~l~~~~~~-----~~~v~~~~~~~~~~~~ 102 (595)
.+.....+ ...||.+.....+...
T Consensus 72 ~ll~~~~~~~~~~~l~iygP~g~~~~~~~ 100 (292)
T COG1234 72 GLLVSRSFRGRREPLKIYGPPGIKEFVET 100 (292)
T ss_pred HHHHHhhccCCCCceeEECCcchhhhhhh
Confidence 87665421 2468888776654444
No 81
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.08 E-value=1.8e-10 Score=119.03 Aligned_cols=79 Identities=24% Similarity=0.465 Sum_probs=64.0
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
...+||+||||||+|+++|+.|++. |++|+|+|+.+.... .....+.|++++++.++++|+++|+|+.+.+..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~----G~~v~liE~~~~~~~---~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~ 76 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA----GLSVALVEGREPPRW---QADQPDLRVYAFAADNAALLDRLGVWPAVRAAR 76 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC----CCEEEEEeCCCCccc---ccCCCCCEEEEecHHHHHHHHHCCchhhhhHhh
Confidence 4568999999999999999999998 999999999874221 011235688999999999999999999987644
Q ss_pred cccccc
Q psy9964 588 TCTVDN 593 (595)
Q Consensus 588 ~~~~~~ 593 (595)
..|+..
T Consensus 77 ~~~~~~ 82 (392)
T PRK08773 77 AQPYRR 82 (392)
T ss_pred CCcccE
Confidence 566654
No 82
>PRK06185 hypothetical protein; Provisional
Probab=99.07 E-value=1.4e-10 Score=120.60 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=62.5
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
.+.+||+||||||+|+++|+.|++. |++|+|+|+.+... .+.|+.++++.++++|+++|+|+.+.+..
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~----G~~v~liE~~~~~~--------~~~r~~~l~~~s~~~L~~lG~~~~~~~~~ 71 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARA----GVDVTVLEKHADFL--------RDFRGDTVHPSTLELMDELGLLERFLELP 71 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCccC--------ccccCceeChhHHHHHHHcCChhHHhhcc
Confidence 4578999999999999999999998 99999999886322 15689999999999999999999986534
Q ss_pred ccccccc
Q psy9964 588 TCTVDNM 594 (595)
Q Consensus 588 ~~~~~~~ 594 (595)
..++..|
T Consensus 72 ~~~~~~~ 78 (407)
T PRK06185 72 HQKVRTL 78 (407)
T ss_pred cceeeeE
Confidence 4455443
No 83
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.07 E-value=2e-10 Score=118.85 Aligned_cols=79 Identities=29% Similarity=0.574 Sum_probs=63.5
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
...+||+||||||+|+++|+.|++. |++|+|+|+.+.... .....++.|+.++++.++++|+++|+|+.+.+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~----G~~V~liE~~~~~~~--~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~ 76 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH----GFSVAVLEHAAPAPF--DADSQPDVRISAISAASVALLKGLGVWDAVQAMR 76 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC----CCEEEEEcCCCCCcc--cccCCCCceEEeccHHHHHHHHHcCChhhhhhhh
Confidence 4568999999999999999999998 999999998763221 1122346799999999999999999999987644
Q ss_pred ccccc
Q psy9964 588 TCTVD 592 (595)
Q Consensus 588 ~~~~~ 592 (595)
..|+.
T Consensus 77 ~~~~~ 81 (391)
T PRK08020 77 SHPYR 81 (391)
T ss_pred Ccccc
Confidence 45544
No 84
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.07 E-value=1.6e-10 Score=118.99 Aligned_cols=73 Identities=26% Similarity=0.453 Sum_probs=61.1
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTC 589 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~ 589 (595)
.+||+||||||+|+++|++|++. |++|+|+|+.+... ...+|+++|+++++++|+++|+++.+.+....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~----G~~V~l~E~~~~~~-------~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~ 70 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA----GLDVTLLERAPREL-------LERGRGIALSPNALRALERLGLWDRLEALGVP 70 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC----CCcEEEEccCcccc-------ccCceeeeecHhHHHHHHHcCChhhhhhccCC
Confidence 57999999999999999999999 99999999983211 11459999999999999999999888875555
Q ss_pred cccc
Q psy9964 590 TVDN 593 (595)
Q Consensus 590 ~~~~ 593 (595)
|...
T Consensus 71 ~~~~ 74 (387)
T COG0654 71 PLHV 74 (387)
T ss_pred ceee
Confidence 5543
No 85
>PRK02113 putative hydrolase; Provisional
Probab=99.04 E-value=3e-10 Score=109.61 Aligned_cols=85 Identities=29% Similarity=0.475 Sum_probs=61.4
Q ss_pred eEEEEecCCCCCC---------------------CcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCcc
Q psy9964 4 IKVTPLGAGQDVG---------------------RSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62 (595)
Q Consensus 4 ~~i~~lg~~~~~~---------------------~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 62 (595)
|++++||+++..| .+||+|+.++..+|||||.+.. ..+.+.+ +.+++
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~iLiD~G~g~~----------~~l~~~~--~~~id 68 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVETEGARILIDCGPDFR----------EQMLRLP--FGKID 68 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEECCeEEEEECCchHH----------HHHHhcC--ccccC
Confidence 5899999776442 2578999888999999997522 2222222 37899
Q ss_pred EEEeCCCChhhcCCcHHHHHhc-CCCccEEEcCccchhh
Q psy9964 63 CLIISHFHLDHCGALPYFTEMF-GYAGPIYMTHPTKAIA 100 (595)
Q Consensus 63 ~i~lTH~H~DH~~g~~~l~~~~-~~~~~v~~~~~~~~~~ 100 (595)
+|||||.|.||++|++.+.... ...++||+++...+.+
T Consensus 69 ~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l 107 (252)
T PRK02113 69 AVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERL 107 (252)
T ss_pred EEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHH
Confidence 9999999999999999886432 2357899887654443
No 86
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.03 E-value=2.4e-10 Score=112.31 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=62.7
Q ss_pred eEEEEecCCCCCC-------------------------CcEEEEEECC-eEEEEeCCCCCCCCCCCCCCCccccccC---
Q psy9964 4 IKVTPLGAGQDVG-------------------------RSCILVSMGG-KNIMLDCGMHMGYHDDRKFPDFKFIAPQ--- 54 (595)
Q Consensus 4 ~~i~~lg~~~~~~-------------------------~~~~~i~~~~-~~~liD~G~~~~~~~~~~~~~~~~l~~~--- 54 (595)
|++++||+++..| .+|++|+.++ ..+|||||.+.. .++.+.
T Consensus 1 m~lt~LGtg~~~g~P~~~C~C~~C~~ar~~~~~~~~R~~ss~li~~~g~~~iLiD~G~g~~----------~ql~~~~~~ 70 (302)
T PRK05184 1 MRIIVLGSAAGGGFPQWNCNCPNCRGARAGTIRAKPRTQSSIAVSADGEDWVLLNASPDIR----------QQIQATPAL 70 (302)
T ss_pred CEEEEEEecCCCCCCcCCCCchhchhhhcCCCcCCcccccEEEEEcCCCEEEEEECChhHH----------HHHHhchhc
Confidence 6899999955321 2678887654 469999997532 223332
Q ss_pred ----CCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEEEcCccchhhH
Q psy9964 55 ----GPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAP 101 (595)
Q Consensus 55 ----~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~~~~~~ 101 (595)
++...+|++|||||.|.||+.|++.+.. ...++||++..+.+.+.
T Consensus 71 ~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~~~~~~l~ 119 (302)
T PRK05184 71 QPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATPAVLEDLS 119 (302)
T ss_pred CccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCHHHHHHHH
Confidence 4455689999999999999999999966 34689999988665443
No 87
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=9.9e-10 Score=112.67 Aligned_cols=99 Identities=40% Similarity=0.784 Sum_probs=80.1
Q ss_pred eEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHh
Q psy9964 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEM 83 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 83 (595)
|++.++|+..++|+.|.+|..++..+++|||....... ...+ ... .. .++|+++|||+|.||+|+++.+...
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~-~~~p---~~~--~~--~~vDavllTHaHlDH~g~lp~l~~~ 72 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPS-PERP---LLP--PF--PKVDAVLLTHAHLDHIGALPYLVRN 72 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCcCC-ccCC---CCC--CC--CCcCEEEeccCchhhhcccHHHHHh
Confidence 46899999999999999999988999999997643322 2222 111 11 2799999999999999999999985
Q ss_pred cCCCccEEEcCccchhhHHHHHhhhccc
Q psy9964 84 FGYAGPIYMTHPTKAIAPILLEDFRKIS 111 (595)
Q Consensus 84 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~ 111 (595)
. +..+||++.++..+++..+.+.....
T Consensus 73 ~-~~~~v~aT~~T~~l~~~~l~d~~~~~ 99 (427)
T COG1236 73 G-FEGPVYATPPTAALLKVLLGDSLKLA 99 (427)
T ss_pred c-cCCceeeccCHHHHHHHHHHHHHhhh
Confidence 4 56899999999999999998887654
No 88
>PRK06184 hypothetical protein; Provisional
Probab=99.01 E-value=3.5e-10 Score=120.65 Aligned_cols=72 Identities=28% Similarity=0.420 Sum_probs=61.3
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
|..+||+||||||+|+++|+.|++. |++|+|+|+.+... ..+|+.+++++++++|+++|+++.+.+ .
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~----Gi~v~viE~~~~~~--------~~~ra~~l~~~~~e~l~~lGl~~~l~~-~ 67 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARR----GVSFRLIEKAPEPF--------PGSRGKGIQPRTQEVFDDLGVLDRVVA-A 67 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCCC--------cCccceeecHHHHHHHHHcCcHHHHHh-c
Confidence 3468999999999999999999999 99999999987432 257999999999999999999998876 4
Q ss_pred ccccc
Q psy9964 588 TCTVD 592 (595)
Q Consensus 588 ~~~~~ 592 (595)
..++.
T Consensus 68 ~~~~~ 72 (502)
T PRK06184 68 GGLYP 72 (502)
T ss_pred Ccccc
Confidence 44443
No 89
>PRK08244 hypothetical protein; Provisional
Probab=99.01 E-value=3e-10 Score=120.90 Aligned_cols=70 Identities=20% Similarity=0.369 Sum_probs=60.9
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTC 589 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~ 589 (595)
.+||+||||||+|+++|+.|++. |++|+|+|+.+... ..+|+++++++++++|+++|+|+.+.+ ...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~----G~~v~viEr~~~~~--------~~~ra~~l~~~~~e~l~~lGl~~~l~~-~~~ 68 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA----GVKTCVIERLKETV--------PYSKALTLHPRTLEILDMRGLLERFLE-KGR 68 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCC--------CCcceeEecHHHHHHHHhcCcHHHHHh-hcc
Confidence 47999999999999999999998 99999999987432 267999999999999999999999876 445
Q ss_pred ccc
Q psy9964 590 TVD 592 (595)
Q Consensus 590 ~~~ 592 (595)
++.
T Consensus 69 ~~~ 71 (493)
T PRK08244 69 KLP 71 (493)
T ss_pred ccc
Confidence 543
No 90
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.00 E-value=8.5e-10 Score=106.13 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=59.4
Q ss_pred eEEEEecCCCC------------------C-----CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCC
Q psy9964 4 IKVTPLGAGQD------------------V-----GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60 (595)
Q Consensus 4 ~~i~~lg~~~~------------------~-----~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~ 60 (595)
|++++||+++. . ..+|++|+.++..+|||||.... . ..+.+.+
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~~----------~----~~~~~~~ 66 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPDL----------A----ERFPPGS 66 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChHH----------h----hcCCccc
Confidence 68999999987 2 13688998888899999995310 1 1123478
Q ss_pred ccEEEeCCCChhhcCCcHHHHHhcCCCccEEEcCcc
Q psy9964 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPT 96 (595)
Q Consensus 61 i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~ 96 (595)
+++|||||.|.||++|+..+.......++||++...
T Consensus 67 i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~ 102 (250)
T PRK11244 67 LQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDP 102 (250)
T ss_pred CCEEEEccCchhhhccHHHHHhhcCCceeEEeCCch
Confidence 999999999999999998775432335789998764
No 91
>KOG1137|consensus
Probab=98.99 E-value=7.4e-10 Score=109.80 Aligned_cols=103 Identities=47% Similarity=0.858 Sum_probs=88.7
Q ss_pred eEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHh
Q psy9964 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEM 83 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 83 (595)
++++.||+++++|++|.+++..++.|++|||....+..-...+.++.. ++..++.+++||.|.||++.+|++.++
T Consensus 14 l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~v-----d~s~id~llIthFhldh~aslp~~~qk 88 (668)
T KOG1137|consen 14 LKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEV-----DLSAIDPLLITHFHLDHAASLPFTLQK 88 (668)
T ss_pred EEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhc-----ccccccHHHHhhhhhhhcccccceeee
Confidence 679999999999999999999999999999987665555555544433 347899999999999999999999998
Q ss_pred cCCCccEEEcCccchhhHHHHHhhhccc
Q psy9964 84 FGYAGPIYMTHPTKAIAPILLEDFRKIS 111 (595)
Q Consensus 84 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~ 111 (595)
..|..++|++.++..+.+-.+.++..+.
T Consensus 89 Tsf~grvfmth~TkAi~kwllsdyvrvs 116 (668)
T KOG1137|consen 89 TSFIGRVFMTHPTKAIYKWLLSDYVRVS 116 (668)
T ss_pred ccccceeEEecchHHHHHhhhhcceEee
Confidence 8889999999999999998888887653
No 92
>PRK09126 hypothetical protein; Provisional
Probab=98.99 E-value=6.3e-10 Score=115.18 Aligned_cols=77 Identities=25% Similarity=0.528 Sum_probs=62.4
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
|+.+||+||||||+|+++|++|++. |++|+|+|+.+.... ..+...+|.++|++.++++|+++|+|+.+....
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~---~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~ 73 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS----GLKVTLIERQPLAAL---ADPAFDGREIALTHASREILQRLGAWDRIPEDE 73 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC----CCcEEEEeCCCcccc---cCCCCchhHHHhhHHHHHHHHHCCChhhhcccc
Confidence 4578999999999999999999998 999999999874321 012246788899999999999999999886533
Q ss_pred cccc
Q psy9964 588 TCTV 591 (595)
Q Consensus 588 ~~~~ 591 (595)
..|+
T Consensus 74 ~~~~ 77 (392)
T PRK09126 74 ISPL 77 (392)
T ss_pred CCcc
Confidence 3444
No 93
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=98.99 E-value=3.6e-10 Score=110.43 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=55.0
Q ss_pred cEEEEEE-CCeEEEEeCCCCCCCCCCCCCCCccccccC-------CCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCcc
Q psy9964 18 SCILVSM-GGKNIMLDCGMHMGYHDDRKFPDFKFIAPQ-------GPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGP 89 (595)
Q Consensus 18 ~~~~i~~-~~~~~liD~G~~~~~~~~~~~~~~~~l~~~-------~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~ 89 (595)
++++|+. ++..+|||||.+.. ..+... ++.+.+|++||+||.|.||+.|+..|.+ ...++
T Consensus 39 ss~ll~~~g~~~iLID~Gpd~r----------~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lp 106 (302)
T TIGR02108 39 SSIAVSADGERWVLLNASPDIR----------QQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFT 106 (302)
T ss_pred cEEEEEeCCCEEEEEECCHHHH----------HHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcC--CCCce
Confidence 5778865 45689999996532 222222 5566899999999999999999999976 34699
Q ss_pred EEEcCccchhhH
Q psy9964 90 IYMTHPTKAIAP 101 (595)
Q Consensus 90 v~~~~~~~~~~~ 101 (595)
||+++.+...+.
T Consensus 107 Vya~~~t~~~L~ 118 (302)
T TIGR02108 107 LYATEMVLQDLS 118 (302)
T ss_pred EEECHHHHHHHH
Confidence 999999776654
No 94
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.98 E-value=5.3e-10 Score=121.30 Aligned_cols=71 Identities=23% Similarity=0.400 Sum_probs=61.1
Q ss_pred ceecEEEECCChHHHHHHHHHhc-CCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQ-NPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~-~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
..+||+||||||+||++|+.|++ . |++|+|+|+.+... ..+|+.+|+++++++|+++|+|+.+.+ .
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~----Gi~v~IiE~~~~~~--------~~grA~gl~prtleiL~~lGl~d~l~~-~ 97 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFP----DITTRIVERKPGRL--------ELGQADGIACRTMEMFQAFGFAERILK-E 97 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCC----CCcEEEEEcCCCCC--------CCCeeeEEChHHHHHHHhccchHHHHh-h
Confidence 46899999999999999999999 6 99999999887432 267999999999999999999999876 4
Q ss_pred ccccc
Q psy9964 588 TCTVD 592 (595)
Q Consensus 588 ~~~~~ 592 (595)
+.++.
T Consensus 98 g~~~~ 102 (634)
T PRK08294 98 AYWIN 102 (634)
T ss_pred ccccc
Confidence 44544
No 95
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.98 E-value=6e-10 Score=115.81 Aligned_cols=72 Identities=32% Similarity=0.662 Sum_probs=60.8
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCC--ceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccccccccc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKD--LSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRT 588 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~--~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~ 588 (595)
|||+||||||+|+++|++|++. | ++|+|+|+.+... ...++|+.+|+++++++|++||+|+.+.+ ..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~----g~g~~v~liE~~~~~~------~~~~~~~~~l~~~~~~~l~~lGl~~~~~~-~~ 70 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA----APHLPVTVVDAAPAGA------WSRDPRASAIAAAARRMLEALGVWDEIAP-EA 70 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC----CCCCEEEEEeCCCccc------CCCCcceEEecHHHHHHHHHCCChhhhhh-hc
Confidence 7999999999999999999997 6 9999999987422 12367999999999999999999999876 55
Q ss_pred ccccc
Q psy9964 589 CTVDN 593 (595)
Q Consensus 589 ~~~~~ 593 (595)
.|+..
T Consensus 71 ~~~~~ 75 (403)
T PRK07333 71 QPITD 75 (403)
T ss_pred CcccE
Confidence 55543
No 96
>PRK07190 hypothetical protein; Provisional
Probab=98.97 E-value=6e-10 Score=117.36 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=60.8
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
+..+||+||||||+|+++|+.|++. |++|+|||+.+... ..+|+.+++++++++|+++|+|+.+.+ .
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~----Gi~V~llEr~~~~~--------~~gra~~l~~~tle~L~~lGl~~~l~~-~ 69 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLC----GLNTVIVDKSDGPL--------EVGRADALNARTLQLLELVDLFDELYP-L 69 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHc----CCCEEEEeCCCccc--------ccccceEeCHHHHHHHHhcChHHHHHh-h
Confidence 4568999999999999999999998 99999999987432 267999999999999999999998865 3
Q ss_pred cccc
Q psy9964 588 TCTV 591 (595)
Q Consensus 588 ~~~~ 591 (595)
..|+
T Consensus 70 ~~~~ 73 (487)
T PRK07190 70 GKPC 73 (487)
T ss_pred Cccc
Confidence 3443
No 97
>PRK06126 hypothetical protein; Provisional
Probab=98.95 E-value=9.4e-10 Score=118.68 Aligned_cols=72 Identities=19% Similarity=0.387 Sum_probs=61.7
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccc
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIES 585 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~ 585 (595)
+.+..+||+||||||+|+++|+.|++. |++|+|+|+.+... ..+|+.+++++++++|+++|+++.+.+
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~----G~~v~viEr~~~~~--------~~~ra~~l~~r~~e~L~~lGl~~~l~~ 70 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRR----GVDSILVERKDGTA--------FNPKANTTSARSMEHFRRLGIADEVRS 70 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCCC--------CCCccccCCHHHHHHHHhcChHHHHHh
Confidence 345568999999999999999999999 99999999886422 367999999999999999999999876
Q ss_pred ccccc
Q psy9964 586 TRTCT 590 (595)
Q Consensus 586 ~~~~~ 590 (595)
...|
T Consensus 71 -~g~~ 74 (545)
T PRK06126 71 -AGLP 74 (545)
T ss_pred -hcCC
Confidence 3443
No 98
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.95 E-value=8.6e-10 Score=115.10 Aligned_cols=73 Identities=33% Similarity=0.610 Sum_probs=61.2
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccccccccc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRT 588 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~ 588 (595)
..+||+||||||+|+++|++|++. |++|+|+|+.+.... ...+|++++++.++++|+++|+|+++.+ ..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~------~~~g~~~~l~~~~~~~L~~lGl~~~l~~-~~ 85 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDS----GLRIALIEAQPAEAA------AAKGQAYALSLLSARIFEGIGVWEKILP-QI 85 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcC----CCEEEEEecCCcccc------CCCCcEEEechHHHHHHHHCChhhhhHh-hc
Confidence 358999999999999999999998 999999999874321 1146888999999999999999999876 45
Q ss_pred cccc
Q psy9964 589 CTVD 592 (595)
Q Consensus 589 ~~~~ 592 (595)
.++.
T Consensus 86 ~~~~ 89 (415)
T PRK07364 86 GKFR 89 (415)
T ss_pred CCcc
Confidence 5543
No 99
>PRK06996 hypothetical protein; Provisional
Probab=98.93 E-value=1.4e-09 Score=112.61 Aligned_cols=72 Identities=29% Similarity=0.530 Sum_probs=57.9
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccc
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHI 583 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~ 583 (595)
|..+.+||+||||||+|+++|+.|++.....|++|+|+|+.+... ...++|++++++.++++|+++|+|+..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~------~~~~~r~~~l~~~~~~~L~~lg~~~~~ 78 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA------SANDPRAIALSHGSRVLLETLGAWPAD 78 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc------CCCCceEEEecHHHHHHHHhCCCchhc
Confidence 555678999999999999999999997111135899999976321 123679999999999999999999873
No 100
>PRK07045 putative monooxygenase; Reviewed
Probab=98.93 E-value=1.1e-09 Score=112.95 Aligned_cols=66 Identities=21% Similarity=0.380 Sum_probs=58.2
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIES 585 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~ 585 (595)
+..+||+||||||+|+++|+.|+++ |++|+|+|+.+... ..+++..|++.++++|+++|+|+.+.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~----G~~v~v~E~~~~~~--------~~~~~~~l~~~~~~~L~~lGl~~~~~~ 68 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGAR----GHSVTVVERAARNR--------AQNGADLLKPSGIGVVRAMGLLDDVFA 68 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhc----CCcEEEEeCCCccc--------CCCcccccCccHHHHHHHcCCHHHHHh
Confidence 4678999999999999999999999 99999999988533 145777899999999999999999865
No 101
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.92 E-value=1.8e-09 Score=111.68 Aligned_cols=78 Identities=29% Similarity=0.615 Sum_probs=62.8
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
.+.+||+||||||+|+++|+.|++. |++|+|+|+.+.... ....+++|++++++.++++|+++|+|+.+....
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~---~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~ 75 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQS----GLRVALLAPRAPPRP---ADDAWDSRVYAISPSSQAFLERLGVWQALDAAR 75 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCccc---cCCCCCCceEeecHHHHHHHHHcCchhhhhhhc
Confidence 3467999999999999999999998 999999999875331 122346799999999999999999999875433
Q ss_pred ccccc
Q psy9964 588 TCTVD 592 (595)
Q Consensus 588 ~~~~~ 592 (595)
..|+.
T Consensus 76 ~~~~~ 80 (388)
T PRK07608 76 LAPVY 80 (388)
T ss_pred CCcce
Confidence 44443
No 102
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.91 E-value=1.3e-09 Score=112.26 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=60.4
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTC 589 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~ 589 (595)
.+||+||||||+|+++|+.|++. |++|+|+|+.+... .....|+..|++.++++|+++|+|+.+.. ...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~------~~~~~~a~~l~~~~~~~L~~lGl~~~l~~-~~~ 70 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA----GIDNVILERQSRDY------VLGRIRAGVLEQGTVDLLREAGVDERMDR-EGL 70 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC----CCCEEEEECCCCcc------cCCceeEeeECHHHHHHHHHCCChHHHHh-cCc
Confidence 47999999999999999999998 99999999987421 01145788899999999999999999976 455
Q ss_pred cccc
Q psy9964 590 TVDN 593 (595)
Q Consensus 590 ~~~~ 593 (595)
|+..
T Consensus 71 ~~~~ 74 (390)
T TIGR02360 71 VHEG 74 (390)
T ss_pred eecc
Confidence 5543
No 103
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.90 E-value=2.1e-09 Score=111.42 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=62.8
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
|..+||+||||||+|+++|+.|++.. .+|++|+|+|+..+.. ...+.+++|++.+++.++++|+++|+|+.+.+ .
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~-~~G~~v~v~E~~~~~~---~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~-~ 75 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLS-HGGLPVALIEAFAPES---DAHPGFDARAIALAAGTCQQLARLGVWQALAD-C 75 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcc-cCCCEEEEEeCCCccc---ccCCCCCccceeccHHHHHHHHHCCChhhhHh-h
Confidence 45789999999999999999998741 1289999999853221 11234678999999999999999999999876 4
Q ss_pred ccccc
Q psy9964 588 TCTVD 592 (595)
Q Consensus 588 ~~~~~ 592 (595)
+.++.
T Consensus 76 ~~~~~ 80 (395)
T PRK05732 76 ATPIT 80 (395)
T ss_pred cCCcc
Confidence 54543
No 104
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.89 E-value=1.5e-09 Score=110.86 Aligned_cols=64 Identities=28% Similarity=0.493 Sum_probs=55.6
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIES 585 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~ 585 (595)
.+||+||||||+|+++|+.|+++ |++|+|+|+.+... ..+|+..|++.++++|+++|+++.+.+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~----G~~v~i~E~~~~~~--------~~~~~~~l~~~~~~~l~~lgl~~~~~~ 64 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA----GIDVTIIERRPDPR--------PKGRGIGLSPNSLRILQRLGLLDEILA 64 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT----TCEEEEEESSSSCC--------CSSSSEEEEHHHHHHHHHTTEHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhc----ccccccchhccccc--------ccccccccccccccccccccchhhhhh
Confidence 37999999999999999999999 99999999987433 256889999999999999999998876
No 105
>PRK06834 hypothetical protein; Provisional
Probab=98.89 E-value=2e-09 Score=113.63 Aligned_cols=67 Identities=22% Similarity=0.399 Sum_probs=58.4
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIES 585 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~ 585 (595)
|..+||+||||||+|+++|+.|++. |++|+|+|+.+... ....|+.+++++++++|+++|+|+.+.+
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~----G~~v~vlEr~~~~~-------~~~~Ra~~l~~~s~~~L~~lGl~~~l~~ 67 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALA----GVDVAIVERRPNQE-------LVGSRAGGLHARTLEVLDQRGIADRFLA 67 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCC-------CCCcceeeECHHHHHHHHHcCcHHHHHh
Confidence 3468999999999999999999998 99999999887322 1256899999999999999999999865
No 106
>PRK02126 ribonuclease Z; Provisional
Probab=98.89 E-value=3.4e-09 Score=105.09 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=63.0
Q ss_pred eEEEEecCCCCCCCcEEEEEE--CCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHH
Q psy9964 4 IKVTPLGAGQDVGRSCILVSM--GGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFT 81 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~~~~i~~--~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~ 81 (595)
++.+...+.. ..|||+|.. ++..+|||||. +..+.+.+ ..+|++||+||.|.||++|++.|.
T Consensus 5 ~~~~~~~g~~--~dn~~~l~~~~~~~~iLiD~G~------------~~~l~~~~--~~~i~~I~iTH~H~DHi~Gl~~l~ 68 (334)
T PRK02126 5 LEPRLVNGPF--DDPGLYVDFLFERRALLFDLGD------------LHHLPPRE--LLRISHIFVSHTHMDHFIGFDRLL 68 (334)
T ss_pred ceeEEecCCC--CCcEEEEEECCCCeEEEEcCCC------------HHHHhhcC--CCccCEEEEcCCChhHhCcHHHHH
Confidence 4555543332 359999986 46889999994 12233333 378999999999999999999998
Q ss_pred Hhc---CCCccEEEcCccchhhHHHHH
Q psy9964 82 EMF---GYAGPIYMTHPTKAIAPILLE 105 (595)
Q Consensus 82 ~~~---~~~~~v~~~~~~~~~~~~~l~ 105 (595)
+.. ...++||++..+..++...+.
T Consensus 69 ~~~~~r~~~l~iygp~~~~~~l~~~~~ 95 (334)
T PRK02126 69 RHCLGRPRRLRLFGPPGFADQVEHKLA 95 (334)
T ss_pred HHhccCCCCeEEEECHHHHHHHHHHhc
Confidence 754 124689999998888777665
No 107
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.88 E-value=2.5e-09 Score=110.30 Aligned_cols=71 Identities=28% Similarity=0.599 Sum_probs=59.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCC-ceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccccccccccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKD-LSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCT 590 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~-~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~~ 590 (595)
||+||||||+|+++|+.|+++ | ++|+|+|+.+.... ...+++|+..++++++++|+++|+|+.+.. ...+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~----G~~~v~v~E~~~~~~~----~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~-~~~~ 71 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL----GKIKIALIEANSPSAA----QPGFDARSLALSYGSKQILEKLGLWPKLAP-FATP 71 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC----CCceEEEEeCCCcccc----CCCCCCeeEeccHHHHHHHHHCCChhhhHh-hcCc
Confidence 799999999999999999999 9 99999999875432 123467999999999999999999998865 3344
Q ss_pred c
Q psy9964 591 V 591 (595)
Q Consensus 591 ~ 591 (595)
.
T Consensus 72 ~ 72 (382)
T TIGR01984 72 I 72 (382)
T ss_pred c
Confidence 3
No 108
>PLN02985 squalene monooxygenase
Probab=98.87 E-value=2.9e-09 Score=112.65 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=61.5
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccc
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIES 585 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~ 585 (595)
.....+||+|||||++|+++|++|+++ |++|+|+|+.+.... ..+...+++++.++|++||+|+.+..
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~----G~~V~vlEr~~~~~~--------~~~g~~L~p~g~~~L~~LGl~d~l~~ 106 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKD----GRRVHVIERDLREPE--------RMMGEFMQPGGRFMLSKLGLEDCLEG 106 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHc----CCeEEEEECcCCCCc--------cccccccCchHHHHHHHcCCcchhhh
Confidence 345678999999999999999999998 999999998753211 34567899999999999999999876
Q ss_pred cccccccc
Q psy9964 586 TRTCTVDN 593 (595)
Q Consensus 586 ~~~~~~~~ 593 (595)
....+...
T Consensus 107 ~~~~~~~~ 114 (514)
T PLN02985 107 IDAQKATG 114 (514)
T ss_pred ccCccccc
Confidence 44445543
No 109
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.87 E-value=2.4e-09 Score=102.32 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=58.1
Q ss_pred eEEEEecCCCCCCCc-EEEEEEC--CeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHH
Q psy9964 4 IKVTPLGAGQDVGRS-CILVSMG--GKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYF 80 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~-~~~i~~~--~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l 80 (595)
|+++.++... .| +|+|.++ ++++|||+|.. . .....+++.+ .+|++|++||.|.||++|+..|
T Consensus 1 ~~i~~~~~~~---dNy~Yli~d~~~~~~vlIDp~~~-~-------~il~~l~~~g---~~l~~Il~TH~H~DH~gG~~~l 66 (258)
T PLN02469 1 MKIIPVPCLE---DNYAYLIIDESTKDAAVVDPVDP-E-------KVLQAAHEHG---AKIKLVLTTHHHWDHAGGNEKI 66 (258)
T ss_pred CeEEEecccc---ceEEEEEEeCCCCeEEEECCCCh-H-------HHHHHHHHcC---CcccEEEecCCCCccccCHHHH
Confidence 3566666554 37 9999764 47999999832 1 2345566665 5799999999999999999999
Q ss_pred HHhcCCCccEEEcCc
Q psy9964 81 TEMFGYAGPIYMTHP 95 (595)
Q Consensus 81 ~~~~~~~~~v~~~~~ 95 (595)
.+.++ +++||++..
T Consensus 67 ~~~~~-~~~V~~~~~ 80 (258)
T PLN02469 67 KKLVP-GIKVYGGSL 80 (258)
T ss_pred HHHCC-CCEEEEech
Confidence 99754 589998764
No 110
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.86 E-value=2.4e-09 Score=110.64 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=60.3
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTC 589 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~ 589 (595)
.+||+||||||+|+++|+.|++. |++|+|+|+.+.... .-..|+..++++++++|+++|+|+.+.+ ...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~----G~~v~v~E~~~~~~~------~~~~~a~~l~~~~~~~l~~lGl~~~l~~-~~~ 70 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA----GIDSVVLERRSREYV------EGRIRAGVLEQGTVDLLREAGVGERMDR-EGL 70 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc----CCCEEEEEcCCcccc------ccccceeEECHhHHHHHHHcCChHHHHh-cCC
Confidence 57999999999999999999998 999999999874210 1145777899999999999999999976 455
Q ss_pred cccc
Q psy9964 590 TVDN 593 (595)
Q Consensus 590 ~~~~ 593 (595)
+...
T Consensus 71 ~~~~ 74 (392)
T PRK08243 71 VHDG 74 (392)
T ss_pred ccCc
Confidence 5443
No 111
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.86 E-value=4e-09 Score=108.94 Aligned_cols=73 Identities=41% Similarity=0.782 Sum_probs=60.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCTV 591 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~~~ 591 (595)
||+||||||+|+++|+.|++. |++|+|+|+.+.... ....+++|+..|++.++++|+++|+++.+.+....++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~----G~~v~v~Er~~~~~~---~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 73 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS----GLKIALIEATPAEAA---ATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPI 73 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC----CCEEEEEeCCCcccc---CCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCc
Confidence 799999999999999999999 999999999885432 1223467999999999999999999999865334444
No 112
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.84 E-value=3.6e-09 Score=109.69 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=57.5
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIES 585 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~ 585 (595)
+..||+||||||+|+++|++|++. |++|+|+|+.+... ..+++++|++.++++|+++|+|+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~----g~~v~v~Er~~~~~--------~~g~gi~l~~~~~~~l~~lg~~~~~~~ 67 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ----GIKVKLLEQAAEIG--------EIGAGIQLGPNAFSALDALGVGEAARQ 67 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC----CCcEEEEeeCcccc--------cccceeeeCchHHHHHHHcCChHHHHh
Confidence 357999999999999999999998 99999999987432 156889999999999999999998765
No 113
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.82 E-value=4.2e-09 Score=113.19 Aligned_cols=71 Identities=28% Similarity=0.400 Sum_probs=61.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
+..+||+||||||+|+++|+.|++. |++|+|+|+.+... ..+|++++++.++++|+++|+++.+.+ .
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~----G~~v~v~Er~~~~~--------~~~ra~~l~~~~~~~L~~lGl~~~l~~-~ 74 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY----GVRVLVLERWPTLY--------DLPRAVGIDDEALRVLQAIGLADEVLP-H 74 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCC--------CCCceeeeCHHHHHHHHHcCChhHHHh-h
Confidence 5578999999999999999999998 99999999987432 257999999999999999999999865 3
Q ss_pred cccc
Q psy9964 588 TCTV 591 (595)
Q Consensus 588 ~~~~ 591 (595)
..+.
T Consensus 75 ~~~~ 78 (538)
T PRK06183 75 TTPN 78 (538)
T ss_pred cccC
Confidence 4443
No 114
>PTZ00367 squalene epoxidase; Provisional
Probab=98.82 E-value=4.6e-09 Score=111.64 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=59.2
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~ 587 (595)
+..+||+||||||+|+++|++|+++ |++|+|+|+.+.... . ...+.+|++++.++|++||+|+.+.. .
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~----G~~V~VlEr~~~~~~------~-r~~G~~L~p~g~~~L~~LGL~d~l~~-i 98 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQ----GRKVLMLERDLFSKP------D-RIVGELLQPGGVNALKELGMEECAEG-I 98 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhc----CCEEEEEcccccccc------c-hhhhhhcCHHHHHHHHHCCChhhHhh-c
Confidence 3578999999999999999999998 999999998752110 0 12445899999999999999998865 5
Q ss_pred cccccc
Q psy9964 588 TCTVDN 593 (595)
Q Consensus 588 ~~~~~~ 593 (595)
..|+..
T Consensus 99 ~~~~~~ 104 (567)
T PTZ00367 99 GMPCFG 104 (567)
T ss_pred Ccceee
Confidence 555544
No 115
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=98.80 E-value=6.6e-09 Score=95.00 Aligned_cols=76 Identities=29% Similarity=0.421 Sum_probs=57.2
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEEEcCc
Q psy9964 16 GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHP 95 (595)
Q Consensus 16 ~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~ 95 (595)
..||++|+.+++.+|||||.+... ..+..+.+.+ ..++++||+||.|.||++|++.+.+. .++++|+++.
T Consensus 5 ~~~~~li~~~~~~iliD~g~~~~~------~~~~~l~~~~--~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~ 74 (183)
T smart00849 5 GVNSYLVEGDGGAILIDTGPGEAE------DLLAELKKLG--PKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEG 74 (183)
T ss_pred ceeEEEEEeCCceEEEeCCCChhH------HHHHHHHHcC--chhhcEEEecccCcchhccHHHHHhC--CCCcEEEchh
Confidence 469999999999999999954210 1112244444 47899999999999999999999885 4688998887
Q ss_pred cchhhH
Q psy9964 96 TKAIAP 101 (595)
Q Consensus 96 ~~~~~~ 101 (595)
....+.
T Consensus 75 ~~~~~~ 80 (183)
T smart00849 75 TAELLK 80 (183)
T ss_pred hhHHHh
Confidence 765443
No 116
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.79 E-value=6.9e-09 Score=111.89 Aligned_cols=65 Identities=22% Similarity=0.431 Sum_probs=58.2
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIES 585 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~ 585 (595)
..+||+||||||+|+++|+.|++. |++|+|+|+.+... ..+|+.++++.++++|+++|+++.+.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~----G~~v~viE~~~~~~--------~~~ra~~l~~~~~~~l~~lGl~~~l~~ 86 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQ----GVPVVLLDDDDTLS--------TGSRAICFAKRSLEIFDRLGCGERMVD 86 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCCCCC--------CCCeEEEEcHHHHHHHHHcCCcHHHHh
Confidence 567999999999999999999998 99999999987432 267999999999999999999998765
No 117
>PRK07588 hypothetical protein; Provisional
Probab=98.79 E-value=5.3e-09 Score=108.15 Aligned_cols=69 Identities=22% Similarity=0.330 Sum_probs=58.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCTV 591 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~~~ 591 (595)
||+||||||+|+++|+.|++. |++|+|+|+.+... ..++++++++.++++|+++|+|+.+.+ ...++
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~--------~~g~~~~l~~~~~~~l~~lGl~~~l~~-~~~~~ 68 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY----GHEPTLIERAPELR--------TGGYMVDFWGVGYEVAKRMGITDQLRE-AGYQI 68 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC----CCceEEEeCCCCcc--------CCCeEEeccCcHHHHHHHcCCHHHHHh-ccCCc
Confidence 899999999999999999998 99999999986432 146788999999999999999999876 45555
Q ss_pred cc
Q psy9964 592 DN 593 (595)
Q Consensus 592 ~~ 593 (595)
..
T Consensus 69 ~~ 70 (391)
T PRK07588 69 EH 70 (391)
T ss_pred cc
Confidence 43
No 118
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.77 E-value=8.1e-09 Score=106.99 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=56.5
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIES 585 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~ 585 (595)
-+|+||||||+|+++|++|++. |++|+|+|+.+... ..+++++|++.++++|+++|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~----G~~V~i~E~~~~~~--------~~g~gi~l~~~~~~~L~~~Gl~~~l~~ 65 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR----GWAVTIIEKAQELS--------EVGAGLQLAPNAMRHLERLGVADRLSG 65 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCccC--------cCCccceeChhHHHHHHHCCChHHHhh
Confidence 4799999999999999999998 99999999877432 267999999999999999999999865
No 119
>PRK05868 hypothetical protein; Validated
Probab=98.77 E-value=7.2e-09 Score=105.93 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=58.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCTV 591 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~~~ 591 (595)
||+||||||+|+++|++|++. |++|+|+|+.+... ..++++.+.+.++++|+++|+|+.+.+ ...++
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~----G~~v~viE~~~~~~--------~~g~~i~~~~~a~~~L~~lGl~~~~~~-~~~~~ 69 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH----GYSVTMVERHPGLR--------PGGQAIDVRGPALDVLERMGLLAAAQE-HKTRI 69 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC--------CCceeeeeCchHHHHHHhcCCHHHHHh-hccCc
Confidence 899999999999999999998 99999999987432 145777889999999999999998865 44555
Q ss_pred cc
Q psy9964 592 DN 593 (595)
Q Consensus 592 ~~ 593 (595)
..
T Consensus 70 ~~ 71 (372)
T PRK05868 70 RG 71 (372)
T ss_pred cc
Confidence 43
No 120
>PRK06753 hypothetical protein; Provisional
Probab=98.76 E-value=8.3e-09 Score=106.05 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=58.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCTV 591 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~~~ 591 (595)
+|+||||||+|+++|+.|++. |++|+|+|+.+... ..++++.|++.+++.|+++|+++.+.+ ...++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~----g~~v~v~E~~~~~~--------~~g~gi~l~~~~~~~L~~~gl~~~~~~-~~~~~ 68 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ----GHEVKVFEKNESVK--------EVGAGIGIGDNVIKKLGNHDLAKGIKN-AGQIL 68 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCccc--------ccccceeeChHHHHHHHhcChHHHHHh-cCCcc
Confidence 799999999999999999998 99999999988533 256888999999999999999998765 44444
Q ss_pred c
Q psy9964 592 D 592 (595)
Q Consensus 592 ~ 592 (595)
.
T Consensus 69 ~ 69 (373)
T PRK06753 69 S 69 (373)
T ss_pred c
Confidence 3
No 121
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.76 E-value=2.4e-09 Score=98.67 Aligned_cols=64 Identities=30% Similarity=0.439 Sum_probs=47.8
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcC
Q psy9964 16 GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFG 85 (595)
Q Consensus 16 ~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~ 85 (595)
+.|||+|+.+++.+|||||...... ....+...+....+|++||+||.|.||+||+..|.+..+
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~------~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~ 68 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFA------KELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP 68 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHH------HHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT
T ss_pred eEEEEEEEECCEEEEEeCCCCchhh------HHhhhhHhhccCCCeEEEEECcccccccccccccccccc
Confidence 3599999999999999999752200 000011233445899999999999999999999999754
No 122
>PRK07538 hypothetical protein; Provisional
Probab=98.74 E-value=9.5e-09 Score=106.94 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=58.5
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccccccccccc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCT 590 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~~ 590 (595)
.||+||||||+|+++|++|+++ |++|+|+|+.+... ..++++.|++.++++|+++|+|+.+.. ...+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~--------~~g~gi~l~p~~~~~L~~lgl~~~l~~-~~~~ 67 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR----GIEVVVFEAAPELR--------PLGVGINLLPHAVRELAELGLLDALDA-IGIR 67 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCcEEEEEcCCccc--------ccCcceeeCchHHHHHHHCCCHHHHHh-hCCC
Confidence 3899999999999999999998 99999999987432 257888999999999999999998765 4444
Q ss_pred cc
Q psy9964 591 VD 592 (595)
Q Consensus 591 ~~ 592 (595)
..
T Consensus 68 ~~ 69 (413)
T PRK07538 68 TR 69 (413)
T ss_pred Cc
Confidence 43
No 123
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.69 E-value=2e-08 Score=96.04 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=55.9
Q ss_pred EEEEecCCCCCCCcE-EEEEE-CCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHH
Q psy9964 5 KVTPLGAGQDVGRSC-ILVSM-GGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTE 82 (595)
Q Consensus 5 ~i~~lg~~~~~~~~~-~~i~~-~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~ 82 (595)
+|+.+..... |. |+|.. +++++|||+|... ..+..+++.+ .++++|++||.|.||++|+..|.+
T Consensus 2 ~i~~~~~~~d---Ny~~li~~~~~~~ilIDpg~~~--------~vl~~l~~~g---~~l~~IllTH~H~DHigG~~~l~~ 67 (251)
T PRK10241 2 NLNSIPAFDD---NYIWVLNDEAGRCLIVDPGEAE--------PVLNAIAENN---WQPEAIFLTHHHHDHVGGVKELVE 67 (251)
T ss_pred eeEEeeeecc---eEEEEEEcCCCcEEEECCCChH--------HHHHHHHHcC---CccCEEEeCCCCchhhccHHHHHH
Confidence 5666655443 54 77755 4578999999531 3456676766 367899999999999999999999
Q ss_pred hcCCCccEEEcCc
Q psy9964 83 MFGYAGPIYMTHP 95 (595)
Q Consensus 83 ~~~~~~~v~~~~~ 95 (595)
.++ .++||++..
T Consensus 68 ~~~-~~~V~~~~~ 79 (251)
T PRK10241 68 KFP-QIVVYGPQE 79 (251)
T ss_pred HCC-CCEEEeccc
Confidence 765 578998754
No 124
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.67 E-value=2.3e-08 Score=97.94 Aligned_cols=79 Identities=13% Similarity=0.211 Sum_probs=58.4
Q ss_pred ceEEEEecCCCCCCCcEEEEEEC--CeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHH
Q psy9964 3 EIKVTPLGAGQDVGRSCILVSMG--GKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYF 80 (595)
Q Consensus 3 ~~~i~~lg~~~~~~~~~~~i~~~--~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l 80 (595)
.|+|+.+-.... .++|+|.++ +.+++||+|... +.++.+++.+ .+|++|++||.|.||++|+..|
T Consensus 75 ~~~i~~ip~l~d--Ny~Yli~d~~t~~~~vVDP~~a~--------~vl~~l~~~g---~~L~~ILlTH~H~DH~GG~~~L 141 (329)
T PLN02398 75 SLQIELVPCLKD--NYAYLLHDEDTGTVGVVDPSEAV--------PVIDALSRKN---RNLTYILNTHHHYDHTGGNLEL 141 (329)
T ss_pred CcEEEEEeeeCc--eEEEEEEECCCCEEEEEcCCCHH--------HHHHHHHhcC---CCceEEEECCCCchhhCCHHHH
Confidence 466666644332 248999753 468999998431 3446666665 5799999999999999999999
Q ss_pred HHhcCCCccEEEcCcc
Q psy9964 81 TEMFGYAGPIYMTHPT 96 (595)
Q Consensus 81 ~~~~~~~~~v~~~~~~ 96 (595)
.+.+ +++||++..+
T Consensus 142 ~~~~--ga~V~g~~~~ 155 (329)
T PLN02398 142 KARY--GAKVIGSAVD 155 (329)
T ss_pred HHhc--CCEEEEehHH
Confidence 9965 4899998654
No 125
>PRK04286 hypothetical protein; Provisional
Probab=98.67 E-value=1.2e-08 Score=100.05 Aligned_cols=94 Identities=19% Similarity=0.167 Sum_probs=56.3
Q ss_pred eEEEEecCCCC-CCCcEEEEEECCeEEEEeCCCCCCCCC--CCCCC-----CccccccCCCCCCCccEEEeCCCChhhcC
Q psy9964 4 IKVTPLGAGQD-VGRSCILVSMGGKNIMLDCGMHMGYHD--DRKFP-----DFKFIAPQGPVTDMIDCLIISHFHLDHCG 75 (595)
Q Consensus 4 ~~i~~lg~~~~-~~~~~~~i~~~~~~~liD~G~~~~~~~--~~~~~-----~~~~l~~~~~~~~~i~~i~lTH~H~DH~~ 75 (595)
|++.+||+++. ...||++|..++..||||+|....... -...+ ..+.+........++++||+||.|.||+.
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~ 80 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHT 80 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCC
Confidence 46788888552 224999999999999999995531110 00000 01112222333468999999999999998
Q ss_pred CcHHHHH---hcCCCccEEEcCccc
Q psy9964 76 ALPYFTE---MFGYAGPIYMTHPTK 97 (595)
Q Consensus 76 g~~~l~~---~~~~~~~v~~~~~~~ 97 (595)
|+..+.= ...+..++|...++.
T Consensus 81 g~~~~~y~~~~~~~~i~iy~~~~~~ 105 (298)
T PRK04286 81 PFYEDPYELSDEEIPKEIYKGKIVL 105 (298)
T ss_pred CccccccccccccchHHHhcCceec
Confidence 8765410 001235667665544
No 126
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.66 E-value=1.6e-08 Score=103.74 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=55.7
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEEEcCc
Q psy9964 16 GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHP 95 (595)
Q Consensus 16 ~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~ 95 (595)
..|||+|.. ++.+|||||.... ....+..+++ .+.+.+|++|++||.|.||++|++.+.+.++ +++||+++.
T Consensus 32 ~~NsyLI~~-~~~vLIDtg~~~~-----~~~~~~~l~~-~~~~~~Id~IilTH~H~DHiggl~~l~~~~p-~a~V~~~~~ 103 (394)
T PRK11921 32 SYNSYLIKD-EKTVLIDTVWQPF-----AKEFVENLKK-EIDLDKIDYIVANHGEIDHSGALPELMKEIP-DTPIYCTKN 103 (394)
T ss_pred EEEEEEEeC-CCEEEEeCCCCCc-----HHHHHHHHHh-hcCcccCCEEEeCCCCCchhhHHHHHHHHCC-CCEEEECHH
Confidence 459999974 5789999995311 0012233333 3344689999999999999999999998665 689999887
Q ss_pred cchhh
Q psy9964 96 TKAIA 100 (595)
Q Consensus 96 ~~~~~ 100 (595)
....+
T Consensus 104 ~~~~l 108 (394)
T PRK11921 104 GAKSL 108 (394)
T ss_pred HHHHH
Confidence 65443
No 127
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.66 E-value=1.8e-08 Score=96.32 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=51.2
Q ss_pred cEEEEEECC-eEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEEEcCcc
Q psy9964 18 SCILVSMGG-KNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPT 96 (595)
Q Consensus 18 ~~~~i~~~~-~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~ 96 (595)
++|+|.+++ +++|||+|... ....++++.+ .++++||+||.|.||++|+..+.+.++ ++||++..+
T Consensus 11 ~~yli~~~~~~~ilID~g~~~--------~i~~~l~~~g---~~l~~Il~TH~H~DHigG~~~l~~~~~--~~V~~~~~~ 77 (248)
T TIGR03413 11 YIWLLHDPDGQAAVVDPGEAE--------PVLDALEARG---LTLTAILLTHHHHDHVGGVAELLEAFP--APVYGPAEE 77 (248)
T ss_pred EEEEEEcCCCCEEEEcCCChH--------HHHHHHHHcC---CeeeEEEeCCCCccccCCHHHHHHHCC--CeEEecccc
Confidence 467777654 79999999531 2345666666 468999999999999999999998654 889988753
No 128
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.65 E-value=2.5e-08 Score=94.55 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=50.9
Q ss_pred CCcEEEEEE----CCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEE
Q psy9964 16 GRSCILVSM----GGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIY 91 (595)
Q Consensus 16 ~~~~~~i~~----~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~ 91 (595)
+.|||+|.+ +++++|||+|.... . ..++.+++.+ .+|++||+||.|.||++|+..|.+.++ ++++|
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP~~~~~----~--~~l~~l~~~g---~~i~~Il~TH~H~DHigg~~~l~~~~~-~a~v~ 91 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDPVDKTV----D--RDLSLVKELG---LKLIYAMNTHVHADHVTGTGLLKTKLP-GVKSI 91 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECCCCCcH----H--HHHHHHHHCC---CeeEEEEcCCCCchhHHHHHHHHHHCC-CCeEE
Confidence 359999975 35799999984210 0 1235566666 468999999999999999999998653 57888
Q ss_pred EcC
Q psy9964 92 MTH 94 (595)
Q Consensus 92 ~~~ 94 (595)
++.
T Consensus 92 ~~~ 94 (251)
T PLN02962 92 ISK 94 (251)
T ss_pred ecc
Confidence 753
No 129
>PRK06847 hypothetical protein; Provisional
Probab=98.63 E-value=4e-08 Score=101.07 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=58.0
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTC 589 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~ 589 (595)
..||+||||||+|+++|+.|++. |++|+|+|+.+... ..++++.+++.++++|+++|+++.+.+ ...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~----g~~v~v~E~~~~~~--------~~g~g~~l~~~~~~~l~~~gl~~~~~~-~~~ 70 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA----GIAVDLVEIDPEWR--------VYGAGITLQGNALRALRELGVLDECLE-AGF 70 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCc--------cCCceeeecHHHHHHHHHcCCHHHHHH-hCC
Confidence 46999999999999999999998 99999999887432 146788999999999999999988765 333
Q ss_pred cc
Q psy9964 590 TV 591 (595)
Q Consensus 590 ~~ 591 (595)
|.
T Consensus 71 ~~ 72 (375)
T PRK06847 71 GF 72 (375)
T ss_pred Cc
Confidence 43
No 130
>PRK07236 hypothetical protein; Provisional
Probab=98.63 E-value=5.4e-08 Score=100.36 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=54.9
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHI 583 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~ 583 (595)
|+..+|+|||||++|+++|+.|++. |++|+|+|+.+... ...++++++++.++++|+++|+++..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~-------~~~g~gi~l~~~~~~~l~~lg~~~~~ 68 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA----GWDVDVFERSPTEL-------DGRGAGIVLQPELLRALAEAGVALPA 68 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCc-------CCCCceeEeCHHHHHHHHHcCCCccc
Confidence 4568999999999999999999998 99999999876321 11345678999999999999998765
No 131
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.59 E-value=8.1e-08 Score=105.09 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=65.3
Q ss_pred eEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHh
Q psy9964 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEM 83 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 83 (595)
.+++++..+++ .|++|+.+++.+|||||.........+....++++..|+ . +|++++||.|.||+||++.+.+.
T Consensus 440 ~~v~~lDVGqG---daili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi--~-ID~lilTH~d~DHiGGl~~ll~~ 513 (662)
T TIGR00361 440 WQVDMLDVGQG---LAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGI--K-LEALILSHADQDHIGGAEIILKH 513 (662)
T ss_pred EEEEEEecCCc---eEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCC--C-cCEEEECCCchhhhCcHHHHHHh
Confidence 67899988875 799999888999999996533222222235678888886 4 99999999999999999999997
Q ss_pred cCCCccEEEcCc
Q psy9964 84 FGYAGPIYMTHP 95 (595)
Q Consensus 84 ~~~~~~v~~~~~ 95 (595)
++ ..++|.+..
T Consensus 514 ~~-v~~i~~~~~ 524 (662)
T TIGR00361 514 HP-VKRLVIPKG 524 (662)
T ss_pred CC-ccEEEeccc
Confidence 65 346676543
No 132
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=98.57 E-value=9.7e-08 Score=91.16 Aligned_cols=66 Identities=17% Similarity=0.366 Sum_probs=49.3
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEEEcCcc
Q psy9964 17 RSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPT 96 (595)
Q Consensus 17 ~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~ 96 (595)
.+|++|..++..+|||||... +. ....+.+|++|||||.|.||++|+..+.......++||++..+
T Consensus 27 ~~s~~i~~~~~~iliD~G~~~----------~~----~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~ 92 (238)
T TIGR03307 27 PCSAVIEFNGARTLIDAGLTD----------LA----ERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDE 92 (238)
T ss_pred ceEEEEEECCcEEEEECCChh----------Hh----hccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchH
Confidence 468899888889999999531 00 1122368999999999999999997775433346789998864
No 133
>KOG2614|consensus
Probab=98.56 E-value=7.8e-08 Score=94.03 Aligned_cols=70 Identities=20% Similarity=0.370 Sum_probs=58.8
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccccccc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTC 589 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~~~~~ 589 (595)
..+|+|||||++|+++|++|+|. |++|+|+|++...+. .++++.|.-..++.|+++|+-+.|.. ...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~----G~~v~VlE~~e~~R~--------~g~si~L~~ng~~aLkai~~~e~i~~-~gi 68 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK----GIDVVVLESREDPRG--------EGTSINLALNGWRALKAIGLKEQIRE-QGI 68 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc----CCeEEEEeecccccc--------CCcceeehhhHHHHHHHcccHHHHHH-hcC
Confidence 35899999999999999999999 999999998664332 57777788889999999998888876 566
Q ss_pred ccc
Q psy9964 590 TVD 592 (595)
Q Consensus 590 ~~~ 592 (595)
|++
T Consensus 69 p~~ 71 (420)
T KOG2614|consen 69 PLG 71 (420)
T ss_pred ccc
Confidence 665
No 134
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.54 E-value=1.1e-07 Score=95.62 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=56.4
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWD 581 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~ 581 (595)
.||+|||||++|+.+|++|++. |++|+|+|.++...........++.|+++++.++..++..+|+|.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~----Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~ 69 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR----GVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLK 69 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchH
Confidence 4899999999999999999998 999999998875432111233367899999999999999999997
No 135
>PRK00685 metal-dependent hydrolase; Provisional
Probab=98.53 E-value=2.1e-07 Score=88.35 Aligned_cols=75 Identities=25% Similarity=0.365 Sum_probs=53.9
Q ss_pred eEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHh
Q psy9964 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEM 83 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 83 (595)
|+|+++|. +||+|+.++.++|||++.... +.. .+.... .++++|++||.|.||++++..+...
T Consensus 1 m~i~~lG~------s~~li~~~~~~iLiDP~~~~~-------~~~-~~~~~~---~~id~vliTH~H~DH~~~~~~~~~~ 63 (228)
T PRK00685 1 MKITWLGH------SAFLIETGGKKILIDPFITGN-------PLA-DLKPED---VKVDYILLTHGHGDHLGDTVEIAKR 63 (228)
T ss_pred CEEEEEcc------eEEEEEECCEEEEECCCCCCC-------CCC-CCChhc---CcccEEEeCCCCccccccHHHHHHh
Confidence 57899875 789999999999999864311 000 111111 3799999999999999998887653
Q ss_pred cCCCccEEEcCccc
Q psy9964 84 FGYAGPIYMTHPTK 97 (595)
Q Consensus 84 ~~~~~~v~~~~~~~ 97 (595)
.++++|++....
T Consensus 64 --~~~~v~~~~~~~ 75 (228)
T PRK00685 64 --TGATVIANAELA 75 (228)
T ss_pred --CCCEEEEeHHHH
Confidence 357899886533
No 136
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.53 E-value=5e-08 Score=101.89 Aligned_cols=77 Identities=23% Similarity=0.232 Sum_probs=55.5
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEEEcCc
Q psy9964 16 GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHP 95 (595)
Q Consensus 16 ~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~ 95 (595)
..|||||. +++.+|||+|.... .-..+..+.+ ...+.+|++||+||.|.||+|+++.|.+.++ +++||+++.
T Consensus 34 t~NsYLI~-~~~~vLIDtg~~~~-----~~~~l~~l~~-~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p-~a~V~~s~~ 105 (479)
T PRK05452 34 SYNSYLIR-EEKNVLIDTVDHKF-----SREFVQNLRN-EIDLADIDYIVINHAEEDHAGALTELMAQIP-DTPIYCTAN 105 (479)
T ss_pred EEEEEEEE-CCCEEEEeCCCccc-----HHHHHHHHHh-cCCHhhCCEEEeCCCCcchhchHHHHHHHCC-CCEEEECHH
Confidence 45999998 46789999994311 0011233332 2334689999999999999999999998654 689999887
Q ss_pred cchhh
Q psy9964 96 TKAIA 100 (595)
Q Consensus 96 ~~~~~ 100 (595)
....+
T Consensus 106 ~~~~l 110 (479)
T PRK05452 106 AIDSI 110 (479)
T ss_pred HHHHH
Confidence 66543
No 137
>PRK11539 ComEC family competence protein; Provisional
Probab=98.51 E-value=1.6e-07 Score=104.18 Aligned_cols=84 Identities=24% Similarity=0.310 Sum_probs=65.2
Q ss_pred eEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHh
Q psy9964 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEM 83 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 83 (595)
.+++++..|++ .+.+|+.+++++|||||......+..+....++++..|+ ++|++++||.|.||+||++.+.+.
T Consensus 501 ~~v~~lDVGqG---~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi---~lD~lilSH~d~DH~GGl~~Ll~~ 574 (755)
T PRK11539 501 WRVDMLDVGHG---LAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL---TPEGIILSHEHLDHRGGLASLLHA 574 (755)
T ss_pred EEEEEEEccCc---eEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC---CcCEEEeCCCCcccCCCHHHHHHh
Confidence 67889988874 788999999999999996532222222234578888886 499999999999999999999997
Q ss_pred cCCCccEEEcC
Q psy9964 84 FGYAGPIYMTH 94 (595)
Q Consensus 84 ~~~~~~v~~~~ 94 (595)
++ ..++|.+.
T Consensus 575 ~~-~~~i~~~~ 584 (755)
T PRK11539 575 WP-MAWIRSPL 584 (755)
T ss_pred CC-cceeeccC
Confidence 65 46777654
No 138
>PRK11445 putative oxidoreductase; Provisional
Probab=98.45 E-value=3.1e-07 Score=93.19 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=50.8
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWD 581 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~ 581 (595)
+||+||||||+|+++|+.|++. ++|+|+|+.+.... .....+++.+|++.++++|+++|+|.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-----~~V~liE~~~~~~~----~~~~~~~g~~l~~~~~~~L~~lgl~~ 63 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-----MKVIAIDKKHQCGT----EGFSKPCGGLLAPDAQKSFAKDGLTL 63 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-----CCEEEEECCCcccc----ccccCcCcCccCHHHHHHHHHcCCCC
Confidence 6999999999999999999884 68999998874221 11124578899999999999999984
No 139
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.42 E-value=5.9e-07 Score=86.24 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=63.5
Q ss_pred EEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhc
Q psy9964 5 KVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMF 84 (595)
Q Consensus 5 ~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~ 84 (595)
++.++..|+. -+.++..+++.+++|+|... .....+++|++.|+ .+||.+++||.|.||+||+..+.+.+
T Consensus 45 ~~~~lDvGqg---~a~li~~~~~~~l~dtg~~~-----~~~~iip~Lk~~GV--~~iD~lIlTH~d~DHiGg~~~vl~~~ 114 (293)
T COG2333 45 KVHMLDVGQG---LATLIRSEGKTILYDTGNSM-----GQDVIIPYLKSLGV--RKLDQLILTHPDADHIGGLDEVLKTI 114 (293)
T ss_pred eEEEEEcCCC---eEEEEeeCCceEEeecCccc-----CceeehhhHhHcCC--ccccEEEeccCCccccCCHHHHHhhC
Confidence 5566666553 67888888889999999641 12245789999998 78999999999999999999999965
Q ss_pred CCCccEEEcCccch
Q psy9964 85 GYAGPIYMTHPTKA 98 (595)
Q Consensus 85 ~~~~~v~~~~~~~~ 98 (595)
++ .++|+......
T Consensus 115 ~v-~~~~i~~~~~~ 127 (293)
T COG2333 115 KV-PELWIYAGSDS 127 (293)
T ss_pred CC-CcEEEeCCCCc
Confidence 42 35666665544
No 140
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.41 E-value=3.2e-07 Score=82.37 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=44.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAW 580 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~ 580 (595)
..+||+||||||+|+++|+.|+++ |++|+++|+.......... ...-.-...+......+|+++|+-
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~----g~kV~v~E~~~~~GGg~~~-Gg~lf~~iVVq~~a~~iL~elgi~ 82 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA----GLKVAVIERKLSPGGGMWG-GGMLFNKIVVQEEADEILDELGIP 82 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH----TS-EEEEESSSS-BTTTTS--CTT---EEEETTTHHHHHHHT--
T ss_pred ccCCEEEECCChhHHHHHHHHHHC----CCeEEEEecCCCCCccccc-cccccchhhhhhhHHHHHHhCCce
Confidence 468999999999999999999999 9999999987643211110 111113446778899999999984
No 141
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.41 E-value=3e-07 Score=95.84 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=53.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCC-ceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKD-LSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIES 585 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~-~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~~ 585 (595)
+|+|||||++|+++|++|++. | ++|+|+|+.+... ..++++.|++.++++|+++|+.+.+.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~----g~~~v~v~Er~~~~~--------~~G~gi~l~~~~~~~L~~lg~~~~~~~ 64 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH----SHLNVQLFEAAPAFG--------EVGAGVSFGANAVRAIVGLGLGEAYTQ 64 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc----CCCCEEEEecCCcCC--------CCccceeeCccHHHHHHHcCChhHHHH
Confidence 699999999999999999998 7 6999999987432 257888999999999999999877654
No 142
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.39 E-value=5e-07 Score=96.95 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=52.0
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAW 580 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~ 580 (595)
.+..+|+||||||+|+++|++|++. |++|+|+|+.+.... ....| .++++|++.++++|++||+|
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~----Gi~V~V~Er~~~~~r---~~G~~-~~~I~L~pngl~aLe~LGl~ 143 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK----GFDVLVFEKDLSAIR---GEGKY-RGPIQIQSNALAALEAIDID 143 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc----CCeEEEEeccccccc---ccccc-CcccccCHHHHHHHHHcCcc
Confidence 3457999999999999999999999 999999998762110 01112 26789999999999999965
No 143
>KOG1298|consensus
Probab=98.38 E-value=3.5e-07 Score=87.90 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=60.6
Q ss_pred CCCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCch--hhccHhHHHHHHHcCCccc
Q psy9964 505 SLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRV--SSINSSSKQLFETIGAWDH 582 (595)
Q Consensus 505 ~~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~--~~l~~~~~~~l~~lg~~~~ 582 (595)
......+||||||+|.+|.++|++|++. |.+|.|||+.-..+ .|. --++|+....|.+||+-|.
T Consensus 40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kd----GRrVhVIERDl~EP----------dRivGEllQPGG~~~L~~LGl~Dc 105 (509)
T KOG1298|consen 40 ARNDGAADVIIVGAGVAGSALAYALAKD----GRRVHVIERDLSEP----------DRIVGELLQPGGYLALSKLGLEDC 105 (509)
T ss_pred hccCCcccEEEECCcchHHHHHHHHhhC----CcEEEEEecccccc----------hHHHHHhcCcchhHHHHHhCHHHH
Confidence 3445678999999999999999999999 99999999865322 143 3589999999999999998
Q ss_pred cccccccccc
Q psy9964 583 IESTRTCTVD 592 (595)
Q Consensus 583 ~~~~~~~~~~ 592 (595)
++...+++..
T Consensus 106 ve~IDAQ~v~ 115 (509)
T KOG1298|consen 106 VEGIDAQRVT 115 (509)
T ss_pred hhcccceEee
Confidence 8876666654
No 144
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.34 E-value=7.9e-07 Score=79.21 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=49.5
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAW 580 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~ 580 (595)
..||+||||||+||++|+.||++ |++|+|+|++-...--.. ....-.-...+.....++|+.+|+-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~----g~kV~i~E~~ls~GGG~w-~GGmlf~~iVv~~~a~~iL~e~gI~ 95 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA----GLKVAIFERKLSFGGGIW-GGGMLFNKIVVREEADEILDEFGIR 95 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC----CceEEEEEeecccCCccc-ccccccceeeecchHHHHHHHhCCc
Confidence 45999999999999999999999 999999998763221111 1111223456778899999999974
No 145
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.32 E-value=3.3e-07 Score=88.95 Aligned_cols=84 Identities=26% Similarity=0.447 Sum_probs=52.4
Q ss_pred CCceEEEEecCCCCCC-----CcE-------EEEEE--CCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEe
Q psy9964 1 MSEIKVTPLGAGQDVG-----RSC-------ILVSM--GGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLII 66 (595)
Q Consensus 1 m~~~~i~~lg~~~~~~-----~~~-------~~i~~--~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~l 66 (595)
|+.|+++++|++..-| .+| ..+.. ..+.++||+|... .....+.+. .++++||+
T Consensus 1 ~~~~~f~~lgsG~~gg~p~~~~~~~~c~~~~~~v~~~~~~~~~lid~g~~~----------~~~~~~~~~--~~idai~~ 68 (269)
T COG1235 1 TGGMRFTVLGSGSSGGVPVIGCDCRACGGNRLRVDCGVGVKTLLIDAGPDL----------RDQGLRLGV--SDLDAILL 68 (269)
T ss_pred CCceEEEEEEEcCCCCceecCCCccccCCceEEEEEEecceeEEEecChhH----------Hhhhhcccc--cccCeEEE
Confidence 4568999998887532 222 23322 2335566666431 111112221 48999999
Q ss_pred CCCChhhcCCcHHHHHhcCCCccEEEcCccch
Q psy9964 67 SHFHLDHCGALPYFTEMFGYAGPIYMTHPTKA 98 (595)
Q Consensus 67 TH~H~DH~~g~~~l~~~~~~~~~v~~~~~~~~ 98 (595)
||.|.|||.|++.|.+.+ ..++|+......
T Consensus 69 TH~H~DHi~Gl~~l~~~~--~~~~~~~~~~~~ 98 (269)
T COG1235 69 THEHSDHIQGLDDLRRAY--TLPIYVNPGTLR 98 (269)
T ss_pred ecccHHhhcChHHHHHHh--cCCcccccceec
Confidence 999999999999999955 466666655444
No 146
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.32 E-value=7.9e-07 Score=92.73 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=48.4
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccccc
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIE 584 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~ 584 (595)
+....+||+||||||+|+++|+.|++. |++|+|+|+.+... .+++-+++ .++|+++|+++.+.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~----G~~VlllEr~~~~~---------k~cgg~i~---~~~l~~lgl~~~~~ 97 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKG----GIETFLIERKLDNA---------KPCGGAIP---LCMVGEFDLPLDII 97 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCC---------CCcccccc---HhHHhhhcCcHHHH
Confidence 444578999999999999999999999 99999999875311 22344554 46778888887654
No 147
>KOG0813|consensus
Probab=98.29 E-value=3.5e-07 Score=85.04 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=49.3
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEEEcC
Q psy9964 17 RSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTH 94 (595)
Q Consensus 17 ~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~ 94 (595)
.|+|||.+++..+.+|++-.. ..+...+....+.+.+ .++.+||.||.|+||+||+..|.+..++++.+|...
T Consensus 13 Ny~YLl~~~~~~~~a~~vDP~--~pe~v~~~~~~~~~~~---~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~ 85 (265)
T KOG0813|consen 13 NYMYLLGDGDKTIDADLVDPA--EPEYVIPSLKKLDDEN---RRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA 85 (265)
T ss_pred ceEEEEecccceeeeeeecCc--chHHHHHHHHhhhhcc---CceeEEEeccccccccCcHHHHHhhccCCcEEecCC
Confidence 479999876666666665321 1111112222222233 589999999999999999999999766678888875
No 148
>KOG1135|consensus
Probab=98.28 E-value=3e-06 Score=87.02 Aligned_cols=97 Identities=32% Similarity=0.630 Sum_probs=71.6
Q ss_pred eEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHh
Q psy9964 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEM 83 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 83 (595)
++++.+-+...-+.-||+|+.++-.||||||++... ..+.+..+++. ..+|++|+|||...=|+||||+...+
T Consensus 2 i~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f----~~~~i~~l~~~---i~~iDaILLShpd~~hlGaLpY~~~k 74 (764)
T KOG1135|consen 2 IKLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESF----DMSMIKELKPV---IPTIDAILLSHPDILHLGALPYAVGK 74 (764)
T ss_pred eeEEeeccccCCCcceEEEEEcCeEEEEeCCCcchh----ccchhhhhhcc---cccccEEEecCCChHHhccchhhHhh
Confidence 344444333333557999999999999999986331 11233334332 27899999999999999999999998
Q ss_pred cCCCccEEEcCccchhhHHHHHhh
Q psy9964 84 FGYAGPIYMTHPTKAIAPILLEDF 107 (595)
Q Consensus 84 ~~~~~~v~~~~~~~~~~~~~l~~~ 107 (595)
++.+++||++-|...+.+..+.+.
T Consensus 75 ~gl~~~VYAT~PV~~mG~m~myD~ 98 (764)
T KOG1135|consen 75 LGLNAPVYATLPVIKMGQMFMYDL 98 (764)
T ss_pred CCccceEEEecchhhhhhhhHHHH
Confidence 888999999999998776655443
No 149
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.23 E-value=1.4e-06 Score=89.84 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=44.2
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccccc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIE 584 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~ 584 (595)
|||+||||||+|+++|+.|++. |++|+|+|+..... ...+-++++ +.|+++|+++.+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~----G~~V~l~E~~~~~~---------~~cg~~i~~---~~l~~l~i~~~~~ 58 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA----GIETILLERALSNI---------KPCGGAIPP---CLIEEFDIPDSLI 58 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCcEEEEECCCCCc---------CcCcCCcCH---hhhhhcCCchHHH
Confidence 6999999999999999999998 99999999873111 123335554 5677888876643
No 150
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.23 E-value=9.8e-07 Score=86.80 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEEEc
Q psy9964 14 DVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMT 93 (595)
Q Consensus 14 ~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~ 93 (595)
+.+-|+|||. +++.+|||++...- ....+..+. .-+++++|+|||++|...||.|.++.+++..+ +++|+|+
T Consensus 33 GttyNSYLI~-~~k~aLID~~~~~~-----~~~~l~~l~-~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s 104 (388)
T COG0426 33 GTTYNSYLIV-GDKTALIDTVGEKF-----FDEYLENLS-KYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICS 104 (388)
T ss_pred CceeeeEEEe-CCcEEEECCCCcch-----HHHHHHHHH-hhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEee
Confidence 4456999999 88999999985411 001122232 23567889999999999999999999999776 8999999
Q ss_pred CccchhhHHHHHhh
Q psy9964 94 HPTKAIAPILLEDF 107 (595)
Q Consensus 94 ~~~~~~~~~~l~~~ 107 (595)
.....+++......
T Consensus 105 ~~~~~~L~~~~~~~ 118 (388)
T COG0426 105 KLAARFLKGFYHDP 118 (388)
T ss_pred HHHHHHHHHhcCCc
Confidence 99888887765444
No 151
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.22 E-value=1.6e-06 Score=83.60 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=50.7
Q ss_pred EEEEecCCCCCCCcEEEEEECC-eEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHh
Q psy9964 5 KVTPLGAGQDVGRSCILVSMGG-KNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEM 83 (595)
Q Consensus 5 ~i~~lg~~~~~~~~~~~i~~~~-~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 83 (595)
.....+.......+++++..++ ..+|||||..... .....+.+...+. +|++|++||.|.||++|+..+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~liD~G~~~~~----~~~~~~~l~~~~~---~i~~vilTH~H~DH~gg~~~~~~~ 85 (252)
T COG0491 13 TAFPIGVGPLSGNSVYLLVDGEGGAVLIDTGLGDAD----AEALLEALAALGL---DVDAILLTHGHFDHIGGAAVLKEA 85 (252)
T ss_pred EEEEecCcccccccEEEEEcCCCceEEEeCCCCchH----HHHHHHHHHHcCC---ChheeeecCCchhhhccHHHHHhh
Confidence 3444442222233556665555 7999999975210 0012234444442 799999999999999999999985
Q ss_pred cCCCccEEEcC
Q psy9964 84 FGYAGPIYMTH 94 (595)
Q Consensus 84 ~~~~~~v~~~~ 94 (595)
.. .++++...
T Consensus 86 ~~-~~~~~~~~ 95 (252)
T COG0491 86 FG-AAPVIAPA 95 (252)
T ss_pred cC-CceEEccc
Confidence 43 35564333
No 152
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.20 E-value=1.6e-06 Score=85.82 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=47.4
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGA 579 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~ 579 (595)
|||+||||||+|+++|+.|++. |++|+|+|+.+... ...+...+++.+.+.|..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~----g~~v~vie~~~~~~--------~~~~~~~~~~~~~~~l~~~~~ 57 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK----GLRVLLLEKKSFPR--------YKPCGGALSPRVLEELDLPLE 57 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCCCC--------cccccCccCHhHHHHhcCCch
Confidence 6999999999999999999998 99999999987432 145677888888888776653
No 153
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.11 E-value=1.4e-05 Score=76.80 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=47.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAW 580 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~ 580 (595)
..+||+||||||+|+++|+.|++. |++|+|+|+.+....... ..........+......+|+++|+-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~----G~~V~liEk~~~~Ggg~~-~gg~~~~~~~v~~~~~~~l~~~gv~ 90 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKA----GLKVAVFERKLSFGGGMW-GGGMLFNKIVVQEEADEILDEFGIR 90 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCCccc-cCccccccccchHHHHHHHHHCCCC
Confidence 358999999999999999999998 999999998764321100 0000111234566778899999874
No 154
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.10 E-value=3.8e-06 Score=86.68 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=44.3
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccccc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIE 584 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~~ 584 (595)
+||+||||||+|+++|+.|++. |++|+|+|+.+... ...+-+++ .+.|+++|+++.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~----G~~V~llE~~~~~~---------~~cg~~i~---~~~l~~~g~~~~~~ 58 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA----GIQTFLLERKPDNA---------KPCGGAIP---LCMVDEFALPRDII 58 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC----CCcEEEEecCCCCC---------CCcccccc---HhhHhhccCchhHH
Confidence 5899999999999999999998 99999999875311 12233454 36678888876643
No 155
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.09 E-value=4.5e-06 Score=86.23 Aligned_cols=38 Identities=39% Similarity=0.648 Sum_probs=34.7
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
++.|||+||||||+|+++|+.|++. |++|+|+|++...
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~----G~~VlvlEk~~~~ 38 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKA----GLDVLVLEKGSEP 38 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHc----CCeEEEEecCCCC
Confidence 3578999999999999999999999 9999999998743
No 156
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.04 E-value=9.3e-06 Score=77.67 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=46.9
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAW 580 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~ 580 (595)
..+||+||||||+|+++|+.|++. |++|+|+|+.+......... ........+.....++|+++|+-
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~----G~~V~vlEk~~~~Ggg~~~g-g~~~~~~~~~~~~~~~l~~~gi~ 86 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN----GLKVCVLERSLAFGGGSWGG-GMLFSKIVVEKPAHEILDEFGIR 86 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCccccCC-CcceecccccchHHHHHHHCCCC
Confidence 368999999999999999999998 99999999987432110000 00011123455677888888874
No 157
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.02 E-value=5.1e-06 Score=84.50 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=52.3
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDH 582 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~ 582 (595)
.+|+|||||++|+.+|++|++. |++|+|+|.++..............|+.+.+.++..+++..|+|..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~----G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ 68 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA----GVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKT 68 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC----CCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHH
Confidence 3899999999999999999998 9999999987753211111122335778888889999999998853
No 158
>PRK10015 oxidoreductase; Provisional
Probab=98.02 E-value=8e-06 Score=85.04 Aligned_cols=37 Identities=30% Similarity=0.654 Sum_probs=34.0
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+..||||||||||+|+++|+.|++. |++|+|+|+.+.
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~----G~~VlliEr~~~ 39 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARA----GLDVLVIERGDS 39 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCC
Confidence 3469999999999999999999998 999999998764
No 159
>PLN02463 lycopene beta cyclase
Probab=97.99 E-value=7.7e-06 Score=84.94 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=44.5
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccc
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHI 583 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~ 583 (595)
....+||+||||||+|+++|+.|++. |++|+|+|+.+... .++...+ ..+.|+++|+++.+
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~----Gl~V~liE~~~~~~---------~p~~~g~---w~~~l~~lgl~~~l 85 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEA----GLSVCCIDPSPLSI---------WPNNYGV---WVDEFEALGLLDCL 85 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHC----CCeEEEeccCccch---------hccccch---HHHHHHHCCcHHHH
Confidence 34568999999999999999999998 99999999876321 1122122 23457778876654
No 160
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.98 E-value=6.6e-06 Score=85.76 Aligned_cols=36 Identities=31% Similarity=0.620 Sum_probs=33.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..||||||||||+|+++|+.|+++ |++|+|+|+.+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~----G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE----GAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC----CCeEEEEEcCCC
Confidence 469999999999999999999999 999999998864
No 161
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=97.93 E-value=4.4e-06 Score=77.12 Aligned_cols=44 Identities=32% Similarity=0.445 Sum_probs=33.0
Q ss_pred CCccEEEeCCCChhhcCCcHHHHHhcC-CCccEEEcCccchhhHH
Q psy9964 59 DMIDCLIISHFHLDHCGALPYFTEMFG-YAGPIYMTHPTKAIAPI 102 (595)
Q Consensus 59 ~~i~~i~lTH~H~DH~~g~~~l~~~~~-~~~~v~~~~~~~~~~~~ 102 (595)
.++++|||||.|.||+.|++.+..... ...+||++....+.+..
T Consensus 28 ~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~ 72 (194)
T PF12706_consen 28 PDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLRE 72 (194)
T ss_dssp GCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHH
T ss_pred CCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHh
Confidence 389999999999999999888776542 11279999777766664
No 162
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.88 E-value=1.5e-05 Score=58.92 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=27.4
Q ss_pred EECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 515 ISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 515 ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
|||||++|+++|+.|++. |.+|+|+|+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~----g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA----GYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT----TSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC----CCcEEEEecCcc
Confidence 899999999999999998 999999998874
No 163
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=97.86 E-value=1.5e-05 Score=75.55 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=47.7
Q ss_pred CCeEEEEe-CCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhc------CCCccEEEcCccc
Q psy9964 25 GGKNIMLD-CGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMF------GYAGPIYMTHPTK 97 (595)
Q Consensus 25 ~~~~~liD-~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~------~~~~~v~~~~~~~ 97 (595)
....+||| +|.+.. ..+ +.+...++++||||+|.||++|++.+.-.. .....||.|+...
T Consensus 17 ~~~~ilfD~ag~g~~----------~~l---~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~ 83 (277)
T TIGR02650 17 SPEEIIFDAAEEGSS----------TLG---GKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGN 83 (277)
T ss_pred Cchhheehhhcccch----------hHH---hhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchh
Confidence 45679999 886522 112 112367999999999999999996543311 1124599998878
Q ss_pred hhhHHHHHhhhc
Q psy9964 98 AIAPILLEDFRK 109 (595)
Q Consensus 98 ~~~~~~l~~~~~ 109 (595)
...+..++-.+.
T Consensus 84 ~~ve~~~~~~~~ 95 (277)
T TIGR02650 84 AAEEETSEFIKA 95 (277)
T ss_pred HHHHHHHHHHHH
Confidence 877754444443
No 164
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.84 E-value=4.2e-05 Score=79.56 Aligned_cols=53 Identities=26% Similarity=0.385 Sum_probs=43.7
Q ss_pred hhhhcccccccCCCCceecEEEECCChHHHHHHHHHhcCCCCCC-ceEEEecCCCCc
Q psy9964 494 TLLVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKD-LSILMIESGPEK 549 (595)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~-~~v~~~e~~~~~ 549 (595)
...+|.-.+.+.+....+||+|||||++|+++|+.|++. .| .+|+|+|+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~---~g~~~V~vle~~~~~ 67 (407)
T TIGR01373 14 GHRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKE---HGITNVAVLEKGWLG 67 (407)
T ss_pred cCCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHh---cCCCeEEEEEccccc
Confidence 345676667788888899999999999999999999983 17 499999997643
No 165
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.80 E-value=2.3e-05 Score=77.00 Aligned_cols=39 Identities=33% Similarity=0.608 Sum_probs=35.3
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~ 550 (595)
|+.+|||||||||+|+++|..+++. |.+|+|+|+.+...
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~----G~~V~lid~~~k~G 39 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKA----GRRVLLIDKGPKLG 39 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhc----CCEEEEEecCcccc
Confidence 4578999999999999999999998 99999999988543
No 166
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.79 E-value=2.4e-05 Score=74.07 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=33.0
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+.+||+|+|||++|+++|++|+++ |.++.||..+..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~----Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQA----GKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhc----CCcEEEEeCChh
Confidence 368999999999999999999999 999999998763
No 167
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.79 E-value=3.8e-05 Score=81.85 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=34.4
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
+..+||+|||||++|+++|+.|+++ |++|+|||+....
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r----G~~V~LlEk~d~~ 41 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGR----GLKVLLCEKDDLA 41 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhC----CCcEEEEECCCCC
Confidence 4568999999999999999999999 9999999998643
No 168
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.75 E-value=2.6e-05 Score=80.23 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=33.3
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+.+||+|||||++|+++|+.|++. |.+|+|+|++..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~----g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARR----GLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC----CCeEEEEecccC
Confidence 468999999999999999999998 999999998764
No 169
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.74 E-value=3.9e-05 Score=81.76 Aligned_cols=36 Identities=33% Similarity=0.587 Sum_probs=33.5
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||||++|+++|+.|++. |++|+|||+...
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~r----Gl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGR----GLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCC
Confidence 468999999999999999999999 999999999764
No 170
>KOG2121|consensus
Probab=97.68 E-value=7.7e-06 Score=85.24 Aligned_cols=78 Identities=26% Similarity=0.356 Sum_probs=53.4
Q ss_pred ceEEEEecCCCCCCC-----cEEEEEECCe-EEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCC
Q psy9964 3 EIKVTPLGAGQDVGR-----SCILVSMGGK-NIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGA 76 (595)
Q Consensus 3 ~~~i~~lg~~~~~~~-----~~~~i~~~~~-~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g 76 (595)
.++|.+||+|..+.. ++|+|..+.. .||+|||.++-....+.. .++.......++++|++||.|.||..|
T Consensus 442 ~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~Y----G~~~~~~~lr~LraI~ISHlHADHh~G 517 (746)
T KOG2121|consen 442 DPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHY----GVENVDTALRKLRAIFISHLHADHHLG 517 (746)
T ss_pred CcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHh----hhcchHHHHHhHHHHHHHhhccccccc
Confidence 479999999987742 5788877444 599999987421111110 001111113689999999999999999
Q ss_pred cHHHHHhc
Q psy9964 77 LPYFTEMF 84 (595)
Q Consensus 77 ~~~l~~~~ 84 (595)
++.++++.
T Consensus 518 l~~vL~~r 525 (746)
T KOG2121|consen 518 LISVLQAR 525 (746)
T ss_pred HHHHHHHH
Confidence 99987754
No 171
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.68 E-value=3.5e-05 Score=78.85 Aligned_cols=35 Identities=34% Similarity=0.582 Sum_probs=27.0
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
|||+|||||++|+++|+.+++. |.+|+|+|+.+..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~----g~~V~vlE~~~~~ 35 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK----GARVLVLERNKRV 35 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT----T--EEEE-SSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCccc
Confidence 7999999999999999999998 9999999998653
No 172
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=5e-05 Score=74.37 Aligned_cols=36 Identities=44% Similarity=0.656 Sum_probs=31.5
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCce-EEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLS-ILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~-v~~~e~~~ 547 (595)
++.+||+||||||+|+++|+.+++. +++ ++|+|...
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~----~l~~~li~~~~~ 37 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARA----GLKVVLILEGGE 37 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHc----CCCcEEEEecCC
Confidence 3578999999999999999999999 988 77777654
No 173
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.65 E-value=7.6e-05 Score=81.28 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=42.3
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHH
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFE 575 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~ 575 (595)
..+||+|||||++|+++|+.|++. |++|+|||+...... -..|.+++-.+..+.|+
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~r----Gl~V~LvE~~d~a~G-------tSsrss~lihgg~ryl~ 125 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATR----GLRVGLVEREDFSSG-------TSSRSTKLIHGGVRYLE 125 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC----CCEEEEEeccccCCC-------cccchhhhhhhHHHHHH
Confidence 358999999999999999999998 999999999864321 13455555455555544
No 174
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.64 E-value=8.1e-05 Score=76.23 Aligned_cols=34 Identities=38% Similarity=0.681 Sum_probs=31.8
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+||+|||||++|+++|+.|++. |.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~----G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR----GLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCC
Confidence 5999999999999999999998 999999998764
No 175
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.63 E-value=4.7e-05 Score=80.59 Aligned_cols=37 Identities=30% Similarity=0.507 Sum_probs=33.9
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
|+.+||||||||+.||++|+.|+++ |++|+|+|+...
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~----G~~V~VlE~~~~ 37 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARA----GLKVTVLEKNDR 37 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhC----CCEEEEEEecCC
Confidence 3568999999999999999999999 999999998764
No 176
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.61 E-value=5.2e-05 Score=78.14 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=31.7
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+||+|||||++|+++|+.|+++ |.+|+|+|+...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~----g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH----GKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCC
Confidence 6999999999999999999998 999999999753
No 177
>PLN02661 Putative thiazole synthesis
Probab=97.56 E-value=0.00014 Score=71.66 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=44.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAW 580 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~ 580 (595)
..+||+|||||++|+++|+.|+++ +|++|+|+|+.............. .....+.....++|+++|+-
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~---~g~kV~viEk~~~~GGG~~~gg~l-~~~~vv~~~a~e~LeElGV~ 158 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKN---PNVKVAIIEQSVSPGGGAWLGGQL-FSAMVVRKPAHLFLDELGVP 158 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHc---CCCeEEEEecCcccccceeeCccc-ccccccccHHHHHHHHcCCC
Confidence 467999999999999999999964 289999999876322100000000 01112233356789999984
No 178
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=97.54 E-value=0.00016 Score=64.51 Aligned_cols=52 Identities=37% Similarity=0.519 Sum_probs=33.9
Q ss_pred EEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCC
Q psy9964 5 KVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGA 76 (595)
Q Consensus 5 ~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g 76 (595)
+|+.+|. +|++|+.++..||+|+..... . ... ...++++|++||.|.||+.-
T Consensus 1 ~It~lgh------a~~~ie~~g~~iliDP~~~~~----------~-~~~---~~~~~D~IlisH~H~DH~~~ 52 (163)
T PF13483_consen 1 KITWLGH------ASFLIETGGKRILIDPWFSSV----------G-YAP---PPPKADAILISHSHPDHFDP 52 (163)
T ss_dssp EEEEEET------TEEEEEETTEEEEES--TTT-------------T-T---SS-B-SEEEESSSSTTT-CC
T ss_pred CEEEEEe------eEEEEEECCEEEEECCCCCcc----------C-ccc---ccCCCCEEEECCCccccCCh
Confidence 4666644 899999999999999984200 0 000 01579999999999999977
No 179
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.54 E-value=8e-05 Score=76.20 Aligned_cols=34 Identities=41% Similarity=0.699 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHH--hcCCCCCCceEEEecCCCCc
Q psy9964 512 DVVISGGGMIGTTLACAI--AQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l--~~~~~~~~~~v~~~e~~~~~ 549 (595)
|||||||||+|+++|+.| ++. |++|+|||+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~----g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP----GLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCccc
Confidence 899999999999999999 665 9999999987754
No 180
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.52 E-value=8.8e-05 Score=77.94 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=33.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
|+.|||+|||||++|+++|+.|++. |++|+|+|+.+
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~----g~~V~lie~~~ 36 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKA----GWRVALIEQSN 36 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHC----CCeEEEEcCCC
Confidence 3468999999999999999999998 99999999864
No 181
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.51 E-value=0.00018 Score=51.34 Aligned_cols=49 Identities=8% Similarity=0.290 Sum_probs=42.2
Q ss_pred cEEEEEECCeEEEE-eCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCC-hhhcCC
Q psy9964 18 SCILVSMGGKNIML-DCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFH-LDHCGA 76 (595)
Q Consensus 18 ~~~~i~~~~~~~li-D~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H-~DH~~g 76 (595)
.|++|..+++..|| +||.+.+ +.+.+.+++..+++.||+|+.+ +|++||
T Consensus 13 p~l~l~~d~~rYlFGn~gEGtQ----------R~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGEGTQ----------RACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEeCCceEEeccCCcHHH----------HHHHHcCCCccccceEEECCCCcccccCC
Confidence 78888888899999 9998754 5556677778999999999999 999987
No 182
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.51 E-value=0.00011 Score=67.97 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=44.1
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccC----CCCCCCCCCchhhccHhHHHHHHH
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH----FSKSSSYSNRVSSINSSSKQLFET 576 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~----~~~~~~~~~r~~~l~~~~~~~l~~ 576 (595)
.+|+|||+|++|+++|+.|+.. |..|+|+|++....-. ......||--+-.+.++.-.+++-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a----G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~ 67 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA----GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRA 67 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc----CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHH
Confidence 3799999999999999999999 9999999987642211 112223555555666666555544
No 183
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.49 E-value=0.00015 Score=81.22 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=46.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIG 578 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg 578 (595)
+|+||||||+|+++|+.|++. .+|++|+|+|+.+... ..++.+.+++.+++.|+.++
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~--~~G~~V~vlEr~~~~~--------~~G~Gi~ls~~~l~~L~~~~ 58 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL--DPAHEVTVVERNRPYD--------TFGWGVVFSDATLGNLRAAD 58 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh--CCCCeEEEEecCCCCc--------ccCcceEccHHHHHHHHhcC
Confidence 799999999999999999985 1279999999877432 14567789999988888776
No 184
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.49 E-value=0.00014 Score=73.80 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=44.0
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIG 578 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg 578 (595)
+||+|||||++|+++|+.|++. |++|+|+|++.. +.+++.+++.+|..++
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~----g~~v~lv~~~~~--------------~~~~s~gs~d~L~~~~ 50 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEA----GKKCAIIAAGQS--------------ALHFSSGSLDLLSRLP 50 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHC----CCCEEEEeCCCc--------------hhhhhhHHHhHhhhcC
Confidence 6999999999999999999998 999999997652 3478899999999874
No 185
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.49 E-value=0.00014 Score=75.21 Aligned_cols=37 Identities=24% Similarity=0.512 Sum_probs=34.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+..|||||+|+|++|+++|.+|+++ |.+|+++|+++.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~----GkkVLhlD~n~~ 38 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVN----GKKVLHMDRNPY 38 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhC----CCEEEEecCCCC
Confidence 4579999999999999999999999 999999998763
No 186
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.48 E-value=0.0001 Score=76.09 Aligned_cols=33 Identities=33% Similarity=0.625 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
||+||||||+|+++|+.|++. |++|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~----g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP----GLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCC
Confidence 899999999999999999998 999999998764
No 187
>PLN02697 lycopene epsilon cyclase
Probab=97.48 E-value=0.00012 Score=77.46 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=33.2
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
....+||+||||||+|+++|+.|++. |++|+|||+..
T Consensus 105 ~~~~~DVvIVGaGPAGLalA~~Lak~----Gl~V~LIe~~~ 141 (529)
T PLN02697 105 GDGTLDLVVIGCGPAGLALAAESAKL----GLNVGLIGPDL 141 (529)
T ss_pred ccCcccEEEECcCHHHHHHHHHHHhC----CCcEEEecCcc
Confidence 34568999999999999999999998 99999999754
No 188
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.48 E-value=0.00017 Score=76.06 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=47.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCC-C----CCCCCCC--c-hhhccHhHHHHHHHcCCcccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHF-S----KSSSYSN--R-VSSINSSSKQLFETIGAWDHI 583 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~-~----~~~~~~~--r-~~~l~~~~~~~l~~lg~~~~~ 583 (595)
+|+|||||++|+++|+.|+++ |++|+|+|+.+...-.. . ....++. . ...-.+...++|+++|+-+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~----G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 76 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA----GHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRL 76 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccce
Confidence 589999999999999999998 99999999886322100 0 0000011 0 123357889999999986544
No 189
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=97.47 E-value=0.00028 Score=70.68 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=27.2
Q ss_pred CCccEEEeCCCChhhcC--CcHHHHHhcCCCccEEEcCccch
Q psy9964 59 DMIDCLIISHFHLDHCG--ALPYFTEMFGYAGPIYMTHPTKA 98 (595)
Q Consensus 59 ~~i~~i~lTH~H~DH~~--g~~~l~~~~~~~~~v~~~~~~~~ 98 (595)
.+|++||+||.|.||+. .+..+.+.++..++++++.....
T Consensus 108 ~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~ 149 (355)
T PRK11709 108 REIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVD 149 (355)
T ss_pred CCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHH
Confidence 58999999999999983 33444443323466777666543
No 190
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.44 E-value=0.00012 Score=77.74 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=33.2
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+..|||||||||++|+++|+++++. |.+|+|+|+.+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~----G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARM----GAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHc----CCcEEEEeccc
Confidence 3469999999999999999999998 99999999874
No 191
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.43 E-value=0.00013 Score=74.41 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=43.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCC---------CCCCchhhccHhHHHHHHHc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSS---------SYSNRVSSINSSSKQLFETI 577 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~---------~~~~r~~~l~~~~~~~l~~l 577 (595)
||+|||||++|+++|+.|++. |.+|+|+|+............ ..+..-..+...+.+.++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~----G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 71 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR----GHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWREL 71 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT----TSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHC----CCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhh
Confidence 899999999999999999998 999999999853321110000 11223345666777777665
No 192
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.43 E-value=0.00014 Score=76.42 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=33.2
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
|+.|||+||||||+|+++|..|++. |.+|+|+|+.+
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~----g~~V~liE~~~ 36 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASA----GKKVALVEESK 36 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhC----CCEEEEEecCC
Confidence 3469999999999999999999998 99999999875
No 193
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00014 Score=75.13 Aligned_cols=38 Identities=32% Similarity=0.590 Sum_probs=34.3
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
+..+||+|||||++|+++|+.|++. |.+|+|+|+....
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~----G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAER----GADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHc----CCEEEEEecCccC
Confidence 3568999999999999999999999 9999999987753
No 194
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.43 E-value=8.7e-05 Score=77.65 Aligned_cols=61 Identities=31% Similarity=0.406 Sum_probs=41.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCC---ceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCccc--ccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKD---LSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDH--IES 585 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~---~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~--~~~ 585 (595)
||+|||||++|.++|+.|++. + ++|+|||+...... +=.-+..|....+++.||+.+. +.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~----~~~~~~v~lie~~~~~~~---------~vGe~~~p~~~~~~~~lgi~e~~~~~~ 66 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARA----GPDALSVTLIESPDIPRI---------GVGESTLPSLRPFLRRLGIDEADFMRA 66 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHH----CTCSSEEEEEE-SSS------------SSEEE--THHHHCHHHHT--HHHHCHH
T ss_pred CEEEECCCHHHHHHHHHHHHh----CCCCcEEEEEecCCCCCC---------CccccchHHHHHHHHHcCCChHHHHHH
Confidence 799999999999999999998 5 99999998764321 1122677788889999999876 544
No 195
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.41 E-value=0.00016 Score=77.81 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=33.7
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+||+|||||++|+++|+.|++. |++|+|||+...
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~r----G~~V~LlEk~d~ 40 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALR----GLRCILVERHDI 40 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHc----CCeEEEEECCCC
Confidence 3468999999999999999999998 999999999764
No 196
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.41 E-value=0.00015 Score=76.66 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=33.8
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.+..|||+||||||+|+++|+.|++. |++|+|+|+.+
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~----G~~v~liE~~~ 38 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKL----GKRVAVIERYR 38 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC----CCEEEEEeccc
Confidence 35679999999999999999999998 99999999864
No 197
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.41 E-value=0.00014 Score=75.78 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=31.5
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+||+|||||++|+++|+.|++. |.+|+|+|+++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~----g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR----GYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence 4999999999999999999998 99999999986
No 198
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.41 E-value=0.00013 Score=76.11 Aligned_cols=33 Identities=42% Similarity=0.611 Sum_probs=27.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
||||||||++|+++|+++++. |.+|+|||+.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~----G~~VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA----GAKVLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT----TS-EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHHC----CCEEEEEECCcc
Confidence 899999999999999999999 999999998874
No 199
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.40 E-value=0.00015 Score=76.54 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=32.9
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+..+||+|||||++|+++|+.|++. .+|.+|+|+|+.+.
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~--~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKEL--EPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHh--CCCCeEEEEEcCCc
Confidence 4568999999999999999999874 12789999998753
No 200
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.39 E-value=0.00016 Score=76.53 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=32.9
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..+||||||+|++|+++|+.++++ |.+|+|||+.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~----G~~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREA----GASVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence 468999999999999999999998 99999999876
No 201
>PRK06370 mercuric reductase; Validated
Probab=97.39 E-value=0.00017 Score=76.22 Aligned_cols=37 Identities=30% Similarity=0.549 Sum_probs=33.8
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.+..|||+||||||+|+++|+.|++. |++|+|+|+.+
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~----G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGL----GMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC----CCeEEEEecCc
Confidence 35679999999999999999999998 99999999864
No 202
>KOG2415|consensus
Probab=97.39 E-value=0.00012 Score=71.47 Aligned_cols=43 Identities=33% Similarity=0.460 Sum_probs=33.9
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCC--CCceEEEecCCCCcc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTL--KDLSILMIESGPEKS 550 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~--~~~~v~~~e~~~~~~ 550 (595)
...+||+||||||+||++|+.|.|.... ..++|+|+|+.....
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G 118 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG 118 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC
Confidence 3568999999999999999988654221 259999999887543
No 203
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.38 E-value=0.00016 Score=71.74 Aligned_cols=36 Identities=31% Similarity=0.650 Sum_probs=30.6
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCC-ceEEEecCCCCcc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKD-LSILMIESGPEKS 550 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~-~~v~~~e~~~~~~ 550 (595)
||+||||+|..|+.+|..|+.. + .+|+|||+++...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~----~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEA----GNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTS----TTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhC----CCCcEEEEEccccCc
Confidence 7999999999999999999997 5 7999999998543
No 204
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.36 E-value=0.00019 Score=75.52 Aligned_cols=40 Identities=40% Similarity=0.619 Sum_probs=33.2
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
++...+||+|||||++|+++|+.|++.. .+.+|+|+|+..
T Consensus 41 ~~~~~~DVvIIGGGI~G~a~A~~La~~~--~~~~V~VlEk~~ 80 (497)
T PTZ00383 41 LGSDVYDVVIVGGGVTGTALFYTLSKFT--NLKKIALIERRS 80 (497)
T ss_pred ccCCcccEEEECccHHHHHHHHHHHhhC--CCCEEEEEecCc
Confidence 3345689999999999999999999851 137999999975
No 205
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.35 E-value=0.00054 Score=52.72 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=41.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGA 579 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~ 579 (595)
.|+|+|||++|+-+|..|+.. |.+|+|+++.+.... .+++ .+.....+.|++.|+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~----g~~vtli~~~~~~~~------~~~~---~~~~~~~~~l~~~gV 55 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL----GKEVTLIERSDRLLP------GFDP---DAAKILEEYLRKRGV 55 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----TSEEEEEESSSSSST------TSSH---HHHHHHHHHHHHTTE
T ss_pred CEEEECcCHHHHHHHHHHHHh----CcEEEEEeccchhhh------hcCH---HHHHHHHHHHHHCCC
Confidence 389999999999999999998 999999999885331 1111 344555677777776
No 206
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.34 E-value=0.016 Score=59.57 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=57.4
Q ss_pred ceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCC-chhhhhcCCCCcc
Q psy9964 166 SYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGAR-SQVRNAMNVQYSN 243 (595)
Q Consensus 166 ~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~-S~vR~~l~~~~~~ 243 (595)
+..++-..+.+.|.+.+.+.|++++++++|++++. +++.+.|+..+| ++++|.||.|.|.+ |.+++.++...+.
T Consensus 139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~---~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~~ 213 (380)
T TIGR01377 139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEP---TELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIPL 213 (380)
T ss_pred CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEe---cCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCCc
Confidence 34556777888999988889999999999999985 456677887766 69999777777764 7888887755443
No 207
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.33 E-value=0.00021 Score=72.63 Aligned_cols=40 Identities=35% Similarity=0.581 Sum_probs=34.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
|+.+||+|||||++|+++|+.|++. .++++|+|+|+....
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~--~p~~~V~llEk~~~~ 40 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEY--EPDLSVALLEKEDGV 40 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHh--CCCceEEEEEccCcc
Confidence 4578999999999999999999998 113999999987754
No 208
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.31 E-value=0.0002 Score=75.18 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=32.4
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+.|||+||||||+|+++|+.+++. |++|+|+|+..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~----G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEH----GAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC----CCcEEEecccc
Confidence 358999999999999999999998 99999999864
No 209
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.31 E-value=0.00035 Score=72.58 Aligned_cols=62 Identities=26% Similarity=0.447 Sum_probs=51.1
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcC
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIG 578 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg 578 (595)
+.+..+||+|||||+.|+-+|.-++.+ |++|+|+|++.... .-+.|.+.|=.+.+|.|++..
T Consensus 8 ~~~~~~DviVIGGGitG~GiArDaA~R----Gl~v~LvE~~D~As-------GTSsrstkLiHGGlRYl~~~e 69 (532)
T COG0578 8 LRMEEFDVIVIGGGITGAGIARDAAGR----GLKVALVEKGDLAS-------GTSSRSTKLIHGGLRYLEQYE 69 (532)
T ss_pred ccccCCCEEEECCchhhHHHHHHHHhC----CCeEEEEecCcccC-------cccCccccCccchhhhhhhcc
Confidence 344789999999999999999999998 99999999988543 226677788888888887743
No 210
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=97.30 E-value=0.00056 Score=66.10 Aligned_cols=69 Identities=26% Similarity=0.373 Sum_probs=46.0
Q ss_pred ceEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHH
Q psy9964 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTE 82 (595)
Q Consensus 3 ~~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~ 82 (595)
.|+|+.+|. +|++|+.++.+||||+........... .. .........+++|++||.|.||+..--.+..
T Consensus 6 ~m~itwlGh------a~~lie~~~~~iliDP~~~~~~~~~~~-~~----~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~ 74 (258)
T COG2220 6 DMKITWLGH------AAFLIETGGKRILIDPVLSGAPSPSNF-PG----GLFEDLLPPIDYILITHDHYDHLDDETLIAL 74 (258)
T ss_pred CceEEEecc------eEEEEEECCEEEEECcccCCCCCcccc-cC----cCChhhcCCCCEEEEeCCCccccCHHHHHHH
Confidence 578888854 889999999999999986532111000 00 0111112579999999999999987554444
No 211
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.30 E-value=0.00023 Score=75.15 Aligned_cols=35 Identities=37% Similarity=0.440 Sum_probs=32.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
|+.|||+||||||+|+++|..+++. |.+|+|+|+.
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~----G~~V~liE~~ 35 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQL----GLKVACVEGR 35 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhC----CCeEEEEecC
Confidence 3468999999999999999999998 9999999963
No 212
>KOG0029|consensus
Probab=97.30 E-value=0.00024 Score=74.55 Aligned_cols=39 Identities=23% Similarity=0.466 Sum_probs=35.3
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
......+|||||||++|+++|-.|.+. |++|+|+|++..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~----G~~V~VLEARdR 49 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDF----GFDVLVLEARDR 49 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHc----CCceEEEeccCC
Confidence 445678999999999999999999999 999999998874
No 213
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.30 E-value=0.00044 Score=72.53 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=31.5
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIES 545 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~ 545 (595)
...+||+|||||++|+++|+.|++. .++.+|+|+|+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~--~~~~~V~vlEr 39 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKEL--DPDWNIEVVER 39 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhC--CCCCeEEEEEc
Confidence 3457999999999999999999975 23799999999
No 214
>PRK06116 glutathione reductase; Validated
Probab=97.27 E-value=0.00026 Score=74.65 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=32.4
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..|||+||||||+|+++|+.|++. |.+|+|+|+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~----G~~V~liE~~~ 37 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY----GAKVALIEAKR 37 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccc
Confidence 368999999999999999999999 99999999863
No 215
>PRK07208 hypothetical protein; Provisional
Probab=97.26 E-value=0.00027 Score=75.27 Aligned_cols=71 Identities=23% Similarity=0.270 Sum_probs=48.4
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCC--C--CCCCCC--C-chhhccHhHHHHHHHcCCc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHF--S--KSSSYS--N-RVSSINSSSKQLFETIGAW 580 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~--~--~~~~~~--~-r~~~l~~~~~~~l~~lg~~ 580 (595)
|+..||+|||||++||++|+.|+++ |++|+|+|+.+...-.. . ..-.++ + ....-.+...++++++|..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~----g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~ 77 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR----GYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILPD 77 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcCC
Confidence 4567999999999999999999998 99999999876422110 0 000011 1 1122357788999999863
Q ss_pred cc
Q psy9964 581 DH 582 (595)
Q Consensus 581 ~~ 582 (595)
+.
T Consensus 78 ~~ 79 (479)
T PRK07208 78 DD 79 (479)
T ss_pred Cc
Confidence 33
No 216
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.26 E-value=0.00037 Score=75.16 Aligned_cols=66 Identities=26% Similarity=0.381 Sum_probs=45.6
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcccc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHI 583 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~~~ 583 (595)
...+||+|||+|++|+++|+.+++. |.+|+|||+.+.... .....+. .+.....+++++.|+.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~----G~~v~llEk~~~~gG----~~~~~~g--~~~~~~~~~~~~~g~~~~~ 70 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHR----GLSTVVVEKAPHYGG----STARSGG--GVWIPNNEVLKRAGVPDTP 70 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCCCc----cccccCc--eeecCCHHHHHHCCCHHHH
Confidence 4578999999999999999999998 999999999764211 1111111 1222334667777776644
No 217
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.26 E-value=0.00029 Score=72.87 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=31.7
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.+||+|||||++|+++|+.|++.. .|.+|+|+|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~--~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERY--PGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhC--CCCeEEEEeCCC
Confidence 379999999999999999999751 379999999975
No 218
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.25 E-value=0.00032 Score=74.08 Aligned_cols=39 Identities=36% Similarity=0.466 Sum_probs=33.3
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..++||+|||||++|+++|+.|++.. +|.+|+|||++..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~--~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQR--PALDVLVLEADLC 60 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhC--CCCeEEEEeCCcc
Confidence 44689999999999999999999851 2789999998764
No 219
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.24 E-value=0.00028 Score=69.97 Aligned_cols=33 Identities=42% Similarity=0.570 Sum_probs=31.1
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
|||+|||||++|+++|..|++. |++|+|+|+.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA----NLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC----CCCEEEEeccC
Confidence 6999999999999999999998 99999999865
No 220
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.23 E-value=0.00032 Score=72.13 Aligned_cols=34 Identities=32% Similarity=0.634 Sum_probs=31.9
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.+||+|||+|++|+++|+.|+++ |.+|+|+|++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~----g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEA----GKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHC----CCcEEEEECCC
Confidence 58999999999999999999998 99999999865
No 221
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.23 E-value=0.0003 Score=74.42 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=32.8
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
|..|||+|||||++|+++|..|++. |.+|+|+|+..
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~ 36 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKL----GKKVALIEKGP 36 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCc
Confidence 3569999999999999999999998 99999999843
No 222
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.23 E-value=0.00029 Score=74.06 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=31.9
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+|||+||||||+|+++|+.+++. |++|+|+|+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~----G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH----GAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCc
Confidence 58999999999999999999999 99999999853
No 223
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.22 E-value=0.00029 Score=75.15 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=32.2
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+||||||||+.|+++|+.|+++ |.+|+|+|+++.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~----G~~V~vlE~~~~ 34 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVK----GAKVLVLERYLI 34 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHC----CCcEEEEECCCC
Confidence 6999999999999999999999 999999999874
No 224
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.21 E-value=0.00031 Score=74.12 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=30.9
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+||+|||||++|+++|+.|++. .+|.+|+|+|+..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~--~~g~~V~VlEk~~ 35 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLREL--EPNWSITLIERLD 35 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHh--CCCCeEEEEEcCC
Confidence 5999999999999999999984 1389999999965
No 225
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.21 E-value=0.00025 Score=69.67 Aligned_cols=100 Identities=23% Similarity=0.229 Sum_probs=59.3
Q ss_pred eEEEEecCCCCC---CCcEEEEEE--CCeEEEEeCCCCCCCCC---C-----C----CCCCc-----cccccCCCCCCCc
Q psy9964 4 IKVTPLGAGQDV---GRSCILVSM--GGKNIMLDCGMHMGYHD---D-----R----KFPDF-----KFIAPQGPVTDMI 61 (595)
Q Consensus 4 ~~i~~lg~~~~~---~~~~~~i~~--~~~~~liD~G~~~~~~~---~-----~----~~~~~-----~~l~~~~~~~~~i 61 (595)
+++..||.+++. ..++||++. .+..+-+|+|.....-. . . ..+.. ......-+....|
T Consensus 1 f~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I 80 (335)
T PF02112_consen 1 FQVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHI 80 (335)
T ss_pred CeEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhh
Confidence 367788877755 447899986 46689999996432100 0 0 00000 0000000112478
Q ss_pred cEEEeCCCChhhcCCcHHHHHhcC----CCccEEEcCccchhhHHH
Q psy9964 62 DCLIISHFHLDHCGALPYFTEMFG----YAGPIYMTHPTKAIAPIL 103 (595)
Q Consensus 62 ~~i~lTH~H~DH~~g~~~l~~~~~----~~~~v~~~~~~~~~~~~~ 103 (595)
+++||||.|.||+.|+..-..... ...+||+.+.+.+.++..
T Consensus 81 ~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~h 126 (335)
T PF02112_consen 81 KGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNH 126 (335)
T ss_pred heEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHc
Confidence 999999999999999854333220 245688888877766654
No 226
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.21 E-value=0.00036 Score=71.14 Aligned_cols=35 Identities=34% Similarity=0.620 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
||+|||||++|+++|+.|++. .+|++|+|+|+.+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~--~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA--RPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc--CCCCeEEEEeCCCC
Confidence 899999999999999999974 24899999999873
No 227
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.20 E-value=0.0062 Score=61.49 Aligned_cols=63 Identities=24% Similarity=0.355 Sum_probs=51.3
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCce-EEEEcCCcEEEecEEEEecCCCchh
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNV-KIKFESGESIECKLLLGTDGARSQV 233 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v-~v~~~dG~~~~adlvVgADG~~S~v 233 (595)
-.++-..|...|.+.+.+.|++++.+++|++++. .++.+ .|...+| +++||.||-|.|.+|.-
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~---~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEI---RGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEe---eCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 3556777889999999989999999999999986 34444 4666666 79999999999998763
No 228
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.20 E-value=0.00032 Score=73.27 Aligned_cols=33 Identities=39% Similarity=0.747 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
||||||+|++|+++|+.++++ |.+|+|||+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~----G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA----GAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT----TT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhh----cCeEEEEEeecc
Confidence 899999999999999999998 999999999886
No 229
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.19 E-value=0.00036 Score=75.31 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=31.9
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.|||+||||||+|+++|+.|++. |++|+|+|+..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~----g~~V~liE~~~ 37 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA----KLDTLIIEKDD 37 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCC
Confidence 48999999999999999999998 99999999865
No 230
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.18 E-value=0.00036 Score=72.89 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
||+|||||++|+++|+.|++. |.+|+|+|+..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~----g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA----GHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC----CCEEEEEeCCC
Confidence 899999999999999999998 99999999975
No 231
>PRK14694 putative mercuric reductase; Provisional
Probab=97.18 E-value=0.00039 Score=73.55 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=33.9
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
....|||+||||||+|+++|+.|++. |++|+|+|+..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~----g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATER----GARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEEccc
Confidence 34679999999999999999999998 99999999865
No 232
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.18 E-value=0.0004 Score=70.24 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=31.0
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+||+|||||++|+++|..|++. |.+|+|+|+++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~----G~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL----NKRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCeEEEEecCC
Confidence 5999999999999999999987 99999999865
No 233
>PRK02106 choline dehydrogenase; Validated
Probab=97.16 E-value=0.00043 Score=75.03 Aligned_cols=38 Identities=34% Similarity=0.661 Sum_probs=33.7
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...||+||||+|.+|+.+|..|++. +|++|+|||+++.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~---~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSED---PDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhC---CCCeEEEecCCCc
Confidence 3468999999999999999999993 2999999999964
No 234
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.16 E-value=0.00035 Score=77.25 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=31.9
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.+||+|||||++|+++|+.|++. |.+|+|+|+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~----G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR----GWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC----CCeEEEEecCC
Confidence 47999999999999999999998 99999999874
No 235
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.16 E-value=0.00064 Score=72.03 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=47.2
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccC--CCCCCC--CC--Cchh-hccHhHHHHHHHcCCcccc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH--FSKSSS--YS--NRVS-SINSSSKQLFETIGAWDHI 583 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~--~~~~~~--~~--~r~~-~l~~~~~~~l~~lg~~~~~ 583 (595)
.||+|||||++||++|+.|+++....|.+|+|+|+++...-. ...... ++ ++.+ .-.+...++++++|+.+.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~ 82 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL 82 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence 589999999999999999998510117899999987742110 000000 11 1111 2235589999999987654
No 236
>PLN02612 phytoene desaturase
Probab=97.16 E-value=0.00078 Score=72.75 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=49.9
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCC---C--CCCCCCCchh---hccHhHHHHHHHcC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHF---S--KSSSYSNRVS---SINSSSKQLFETIG 578 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~---~--~~~~~~~r~~---~l~~~~~~~l~~lg 578 (595)
.....+|+|||||++|+++|+.|++. |++|+|+|+++...... . ....+|.-.. ...+...++|+++|
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~----g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG 165 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADA----GHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELG 165 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhC
Confidence 34457999999999999999999998 99999999875321100 0 0001111111 23467899999999
Q ss_pred Ccccc
Q psy9964 579 AWDHI 583 (595)
Q Consensus 579 ~~~~~ 583 (595)
+-+.+
T Consensus 166 ~~~~~ 170 (567)
T PLN02612 166 INDRL 170 (567)
T ss_pred Ccccc
Confidence 96554
No 237
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.16 E-value=0.00039 Score=73.55 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=32.7
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..|||+||||||+|+++|..|++. |.+|+|+|+.+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~----G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL----GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC----CCcEEEEeccc
Confidence 468999999999999999999998 99999999865
No 238
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.13 E-value=0.00046 Score=73.16 Aligned_cols=35 Identities=40% Similarity=0.565 Sum_probs=32.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..|||+||||||+|+++|+.|++. |++|+|+|+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~----G~~v~lie~~~ 37 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL----GLKTALVEKGK 37 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC----CCeEEEEEccC
Confidence 468999999999999999999998 99999999864
No 239
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.12 E-value=0.00046 Score=72.97 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=32.5
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..|||+||||||+|+++|..|++. |.+|+|+|+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~----G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL----GLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC----CCcEEEEecCC
Confidence 469999999999999999999998 99999999864
No 240
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.10 E-value=0.00082 Score=71.04 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=47.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccC--CC-CCCCC--C--Cc-hhhccHhHHHHHHHcCCcccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH--FS-KSSSY--S--NR-VSSINSSSKQLFETIGAWDHI 583 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~--~~-~~~~~--~--~r-~~~l~~~~~~~l~~lg~~~~~ 583 (595)
+|+|||||++|+++|+.|++. |++|+|+|+.+..... .. ....+ + .. .....+...++++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA----GHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 589999999999999999998 9999999987743210 00 00000 1 00 012346789999999998766
Q ss_pred c
Q psy9964 584 E 584 (595)
Q Consensus 584 ~ 584 (595)
.
T Consensus 77 ~ 77 (474)
T TIGR02732 77 L 77 (474)
T ss_pred c
Confidence 4
No 241
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.10 E-value=0.0005 Score=72.73 Aligned_cols=35 Identities=34% Similarity=0.387 Sum_probs=32.3
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..|||+||||||+|+++|..|++. |.+|+|+|+..
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~----G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQL----GLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEecCC
Confidence 358999999999999999999998 99999999863
No 242
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00061 Score=68.33 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=34.4
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+...||||||+|++||++|+.|.+. |++|+|+|.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka----G~~v~ilEar~r 41 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA----GYQVQILEARDR 41 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc----CcEEEEEeccCC
Confidence 5678999999999999999999999 999999998774
No 243
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.09 E-value=0.00049 Score=73.41 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=33.3
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||||||+|.+|+++|+.+++. |.+|+|||+.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~----Ga~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDA----GMNPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCC
Confidence 368999999999999999999998 999999998774
No 244
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.09 E-value=0.00048 Score=73.55 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=31.8
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.||||||||+.||++|+.|+++ |++|+|+|+++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~----G~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR----GYRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCC
Confidence 4899999999999999999999 999999999863
No 245
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.08 E-value=0.00062 Score=63.04 Aligned_cols=32 Identities=44% Similarity=0.697 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
||+|||||++|+++|..|++. +.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~----~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP----GAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----TSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC----CCeEEEEeccc
Confidence 799999999999999999987 99999998766
No 246
>PLN02487 zeta-carotene desaturase
Probab=97.06 E-value=0.00096 Score=71.37 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=49.4
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCC-----CCCCCCCc---hhhccHhHHHHHHHcCCccc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFS-----KSSSYSNR---VSSINSSSKQLFETIGAWDH 582 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~-----~~~~~~~r---~~~l~~~~~~~l~~lg~~~~ 582 (595)
.+|+|||||++|+++|+.|++. |++|+|+|+.+....... ....++.- .....+...++|+++|+.+.
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~----g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~ 151 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADEN 151 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccc
Confidence 5899999999999999999998 999999998874321000 00000100 01234779999999999887
Q ss_pred cc
Q psy9964 583 IE 584 (595)
Q Consensus 583 ~~ 584 (595)
+.
T Consensus 152 ~~ 153 (569)
T PLN02487 152 LL 153 (569)
T ss_pred cc
Confidence 64
No 247
>PRK07121 hypothetical protein; Validated
Probab=97.06 E-value=0.00058 Score=72.82 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=33.3
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||||||+|.+|+++|+.+++. |.+|+|||+.+.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~----G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAA----GARVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCCC
Confidence 468999999999999999999998 999999998764
No 248
>PLN02268 probable polyamine oxidase
Probab=97.05 E-value=0.00059 Score=71.67 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=31.4
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.+|+|||||++||++|+.|.+. |.+|+|+|+++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~----g~~v~vlEa~~r 34 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDA----SFKVTLLESRDR 34 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCC
Confidence 3799999999999999999998 999999998764
No 249
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.05 E-value=0.00088 Score=70.96 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=46.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCC--CCCceEEEecCCCCcccCC--C--CCCCC--CCchh-hccHhHHHHHHHcCCccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPT--LKDLSILMIESGPEKSLHF--S--KSSSY--SNRVS-SINSSSKQLFETIGAWDH 582 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~--~~~~~v~~~e~~~~~~~~~--~--~~~~~--~~r~~-~l~~~~~~~l~~lg~~~~ 582 (595)
+|+|||||++||++|+.|++... ..|.+|+|+|+.+...-.. . ....+ .+..+ .-.+...+++++||+-+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~ 82 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEE 82 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccc
Confidence 59999999999999999998510 0148999999886421110 0 00011 12222 234667899999998655
Q ss_pred c
Q psy9964 583 I 583 (595)
Q Consensus 583 ~ 583 (595)
+
T Consensus 83 ~ 83 (463)
T PRK12416 83 M 83 (463)
T ss_pred e
Confidence 4
No 250
>KOG2820|consensus
Probab=97.04 E-value=0.00064 Score=65.04 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=34.9
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~ 550 (595)
.+..||||||+|+-|+++|+.|++. |.+++++|+-+...
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~----g~killLeqf~~ph 43 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKR----GDKILLLEQFPLPH 43 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhc----CCeEEEEeccCCCc
Confidence 3567999999999999999999999 99999999987543
No 251
>PRK07233 hypothetical protein; Provisional
Probab=97.04 E-value=0.00056 Score=71.86 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=46.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCC--C--CCCCCC--c-hhhccHhHHHHHHHcCCcccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFS--K--SSSYSN--R-VSSINSSSKQLFETIGAWDHI 583 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~--~--~~~~~~--r-~~~l~~~~~~~l~~lg~~~~~ 583 (595)
+|+|||||++||++|+.|++. |.+|+|+|+.+...-... . .-.++. . ...-.+...++++++|+-+.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~----G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~ 75 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR----GHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKL 75 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCce
Confidence 589999999999999999998 999999999874321100 0 001111 1 112356788999999985443
No 252
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.04 E-value=0.00059 Score=72.19 Aligned_cols=33 Identities=39% Similarity=0.595 Sum_probs=31.3
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
|||+||||||+|+++|..+++. |++|+|+|+.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~----g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL----GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCc
Confidence 6999999999999999999998 99999999864
No 253
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.02 E-value=0.011 Score=61.26 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=58.6
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCc-hhhhhcCCC
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS-QVRNAMNVQ 240 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S-~vR~~l~~~ 240 (595)
-.++...+.+.|.+.+.+.|++++++++|++++. .++++.|...+| ++++|.||.|+|.+| .+.+.++.+
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~---~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDE---HANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEe---cCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 4667888999999999889999999999999985 445677887777 699999999999998 566666654
No 254
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.02 E-value=0.00058 Score=72.16 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=45.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCC--ceEEEecCCCCcccCCC----CCCCCC--Cc-hhhccHhHHHHHHHcCCccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKD--LSILMIESGPEKSLHFS----KSSSYS--NR-VSSINSSSKQLFETIGAWDH 582 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~--~~v~~~e~~~~~~~~~~----~~~~~~--~r-~~~l~~~~~~~l~~lg~~~~ 582 (595)
+|+|||||++||++|+.|++. | .+|+|+|+++...-... ..-.+| ++ ...-.+...++++++|+-+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~----G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~ 77 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK----GPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDE 77 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh----CCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccc
Confidence 699999999999999999997 6 89999998763221000 000111 11 12234567899999998643
No 255
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.99 E-value=0.00066 Score=71.89 Aligned_cols=32 Identities=41% Similarity=0.562 Sum_probs=30.6
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
|||+|||||++|+++|+.|++. |.+|+|+|+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~----G~~v~lie~~ 33 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQL----GLKVALVEKE 33 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC----CCeEEEEecC
Confidence 7999999999999999999998 9999999983
No 256
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.98 E-value=0.00066 Score=73.68 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=32.7
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...||+|||+|++|+++|+.++++ |.+|+|||+.+.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~----G~~V~lieK~~~ 37 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEA----GVHVDLFSLVPV 37 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHc----CCcEEEEEccCC
Confidence 456999999999999999999998 999999998764
No 257
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.00069 Score=69.27 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=46.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchh--------hccHhHHHHHHHcCCcccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVS--------SINSSSKQLFETIGAWDHI 583 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~--------~l~~~~~~~l~~lg~~~~~ 583 (595)
.|+|+|||++||++|+.|+.+ |++|+|+|+++...-....-...|++.. +.-+.-+++|.+++.-+.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~ 77 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA----GYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRL 77 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC----CCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchhee
Confidence 599999999999999999999 9999999998853221100001133221 3446677778887765443
No 258
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.97 E-value=0.00084 Score=63.85 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=32.0
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+|.+|||+|+.|+.+|-.|++. |.+|+|||+++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~----gk~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL----GKRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc----CCEEEEEecccc
Confidence 6999999999999999999998 999999999884
No 259
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.96 E-value=0.00072 Score=71.05 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCC-ceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKD-LSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~-~~v~~~e~~~~ 548 (595)
||||||||++|+++|+.++++ | .+|+|||+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~----G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA----GAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc----CCccEEEEecCCC
Confidence 899999999999999999998 9 99999998875
No 260
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.96 E-value=0.0011 Score=63.20 Aligned_cols=38 Identities=26% Similarity=0.526 Sum_probs=34.4
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
+..+||||||+|++|+.+|+.|+.. |.+|+|+|.....
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~a----G~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADA----GKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhc----CceEEEEcccccc
Confidence 4578999999999999999999999 9999999987654
No 261
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.96 E-value=0.001 Score=68.27 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=49.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCC--ceEEEecCCCCcccC--CCCCCC--C--CCchhhcc-HhHHHHHHHcCCccc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKD--LSILMIESGPEKSLH--FSKSSS--Y--SNRVSSIN-SSSKQLFETIGAWDH 582 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~--~~v~~~e~~~~~~~~--~~~~~~--~--~~r~~~l~-~~~~~~l~~lg~~~~ 582 (595)
.|+|||||++||++|+.|++. + ..++|+|+.+...-- .....+ + .++..-.. +..++++++||+-+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~----~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~ 77 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA----GPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDK 77 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh----CCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHh
Confidence 589999999999999999998 7 999999997532110 000000 1 23344444 889999999999888
Q ss_pred cc
Q psy9964 583 IE 584 (595)
Q Consensus 583 ~~ 584 (595)
+.
T Consensus 78 l~ 79 (444)
T COG1232 78 LL 79 (444)
T ss_pred hc
Confidence 76
No 262
>PRK10262 thioredoxin reductase; Provisional
Probab=96.96 E-value=0.00077 Score=67.60 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=32.0
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
+..+||+||||||+|+++|..|++. |++++++|..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~----g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARA----NLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHC----CCCeEEEEee
Confidence 4678999999999999999999998 9999999854
No 263
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.94 E-value=0.00087 Score=72.35 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=33.0
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..+||||||+|.+|+++|+.++++ |.+|+|||+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~----G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA----GKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence 468999999999999999999998 99999999987
No 264
>PLN02507 glutathione reductase
Probab=96.94 E-value=0.00079 Score=71.61 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=33.0
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecC
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIES 545 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~ 545 (595)
+.+.+|||+||||||+|+.+|..+++. |++|+|+|+
T Consensus 21 ~~~~~yDvvVIG~GpaG~~aA~~a~~~----G~~V~liE~ 56 (499)
T PLN02507 21 ATHYDFDLFVIGAGSGGVRAARFSANF----GAKVGICEL 56 (499)
T ss_pred ccccccCEEEECCCHHHHHHHHHHHHC----CCeEEEEec
Confidence 445679999999999999999999999 999999995
No 265
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.93 E-value=0.00089 Score=71.00 Aligned_cols=33 Identities=42% Similarity=0.506 Sum_probs=31.4
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIES 545 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~ 545 (595)
..|||+||||||+|+++|+.+++. |.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~----g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL----GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC----CCeEEEEec
Confidence 468999999999999999999998 999999997
No 266
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.92 E-value=0.00081 Score=71.55 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=31.1
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
.|||+||||||+|+++|..+++. |.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~----G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH----GKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC----CCeEEEEecc
Confidence 58999999999999999999999 9999999963
No 267
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.92 E-value=0.00072 Score=72.45 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=30.2
Q ss_pred EEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 513 v~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
|||||||+.||++|+.|+++ |++|+|+|+...
T Consensus 1 vvVIGaG~~GL~aA~~La~~----G~~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAA----GIPVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHhC----CCcEEEEECCCC
Confidence 68999999999999999999 999999999874
No 268
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.91 E-value=0.00088 Score=72.37 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=33.0
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||+|.+|+++|+.+++. |.+|+|||+.+.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~----G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA----GFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC----CCcEEEEEccCC
Confidence 468999999999999999999998 999999998754
No 269
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.91 E-value=0.00089 Score=73.39 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=33.7
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+||+|||||.+|+++|+.+++. |.+|+|||+.+.
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~----G~~VivleK~~~ 39 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQR----GLDTIVLSLVPA 39 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHc----CCCEEEEeCCCC
Confidence 4568999999999999999999998 999999998765
No 270
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00094 Score=69.64 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=34.7
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCce-EEEecCCCC
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLS-ILMIESGPE 548 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~-v~~~e~~~~ 548 (595)
+.+..+||+|||||+.|+++|++|.+. |.. ++|+|++..
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~----g~~~~~i~Ek~~~ 43 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQA----GVPDFVIFEKRDD 43 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHc----CCCcEEEEEccCC
Confidence 345678999999999999999999999 888 999999863
No 271
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.90 E-value=0.098 Score=55.86 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcC
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMN 238 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~ 238 (595)
..+.+.|.+.+++.|++|+++++|++|..+ ++....|++.+|+++++|.||.|=|....+++.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence 568888999998899999999999999862 34556788889999999999999888888888774
No 272
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.90 E-value=0.00097 Score=72.88 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=33.6
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+||+|||+|.+|+++|+.+++. |.+|+|||+.+.
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~----G~~V~lieK~~~ 42 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARER----GLRVAVVCKSLF 42 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHC----CCCEEEEeccCC
Confidence 3568999999999999999999998 999999999764
No 273
>PRK13748 putative mercuric reductase; Provisional
Probab=96.89 E-value=0.00096 Score=72.54 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.7
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..|||+||||||+|+++|..|++. |++|+|+|+..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~----G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ----GARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCc
Confidence 468999999999999999999998 99999999864
No 274
>PRK12831 putative oxidoreductase; Provisional
Probab=96.89 E-value=0.0019 Score=68.05 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=32.7
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
....||+||||||+|+++|+.|++. |++|+|+|+.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~----G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM----GYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC----CCeEEEEecCC
Confidence 3456999999999999999999998 99999999865
No 275
>PTZ00058 glutathione reductase; Provisional
Probab=96.89 E-value=0.0011 Score=71.08 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=33.7
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
....|||+|||||++|.++|..+++. |.+|+|||+..
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~----G~~ValIEk~~ 81 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARN----KAKVALVEKDY 81 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHc----CCeEEEEeccc
Confidence 34679999999999999999999999 99999999864
No 276
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.89 E-value=0.0009 Score=62.09 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=24.8
Q ss_pred EEECCChHHHHHHHHHhcCCCCCCce-EEEecCCCC
Q psy9964 514 VISGGGMIGTTLACAIAQNPTLKDLS-ILMIESGPE 548 (595)
Q Consensus 514 ~ivG~G~~G~~~a~~l~~~~~~~~~~-v~~~e~~~~ 548 (595)
+||||||+|+++|..|.+. |++ |+|+|+++.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~----g~~~v~v~e~~~~ 32 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER----GIDPVVVLERNDR 32 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT----T---EEEEESSSS
T ss_pred CEECcCHHHHHHHHHHHhC----CCCcEEEEeCCCC
Confidence 6999999999999999998 999 999998854
No 277
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.87 E-value=0.001 Score=72.54 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=33.3
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||||.+|+++|+.+++. |.+|+|||+.+.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~----G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVEL----GYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEeccCC
Confidence 468999999999999999999998 999999999764
No 278
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.87 E-value=0.00092 Score=72.50 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=32.6
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
|..+||+|||||++|+++|+.+++.. +|.+|+|||+.+.
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g--~g~~V~vleK~~~ 39 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLD--PSLDVAVVAKTHP 39 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhc--CCCcEEEEeccCC
Confidence 34679999999999999999999751 1489999999764
No 279
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.87 E-value=0.0011 Score=72.10 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=32.9
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
...+||+|||+|.+|+++|+.+++. |.+|+|||+.+
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~----G~~V~vleK~~ 45 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARA----GLSVAVLSKVF 45 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHC----CCcEEEEeccC
Confidence 4568999999999999999999998 99999999974
No 280
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.87 E-value=0.00097 Score=71.29 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=31.8
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.+||||||+| +|+++|+.+++. |.+|+|||+.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~----G~~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAARE----GLSVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHC----CCcEEEEecCCC
Confidence 6799999999 999999999998 999999998764
No 281
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.87 E-value=0.001 Score=71.22 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=32.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
...|||+||||||+|+++|..|++. |++|+|++..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~----G~~v~li~~~ 243 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK----GIRTGIVAER 243 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecC
Confidence 3468999999999999999999998 9999999865
No 282
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.86 E-value=0.027 Score=58.60 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=56.5
Q ss_pred eeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCc-eEEEEcCCcEEEec-EEEEecCCCchhhhhcCCCCcccC
Q psy9964 168 IVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNN-VKIKFESGESIECK-LLLGTDGARSQVRNAMNVQYSNWS 245 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~-v~v~~~dG~~~~ad-lvVgADG~~S~vR~~l~~~~~~~~ 245 (595)
.++-..+...|.+.+.+.|+++..+++|++++.. +++. +.|+..+| +++++ +||+|+|..|.+++.++...+...
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~--~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~~ 255 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRR--DGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIES 255 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc--CCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcCc
Confidence 3445567788889998899999999999999741 2333 34777777 58887 679999999999998876544444
Q ss_pred C
Q psy9964 246 Y 246 (595)
Q Consensus 246 ~ 246 (595)
+
T Consensus 256 ~ 256 (407)
T TIGR01373 256 H 256 (407)
T ss_pred c
Confidence 4
No 283
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.86 E-value=0.001 Score=70.43 Aligned_cols=35 Identities=40% Similarity=0.631 Sum_probs=32.6
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
|||+|||+||+|+++|..|+++ |++|++||++...
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~----g~~v~~~e~~~~~ 35 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA----GLKVAMVEIGAAD 35 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC----CCeEEEEeccCcc
Confidence 6999999999999999999999 9999999998753
No 284
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.86 E-value=0.0012 Score=71.78 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=33.8
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+||+|||+|++|+++|+.++++ |.+|+|+|+.+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~----G~~v~llEk~~~ 43 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKL----GLDVVVLEKEPV 43 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHc----CCeEEEEecCCC
Confidence 3478999999999999999999998 999999998764
No 285
>PLN02568 polyamine oxidase
Probab=96.86 E-value=0.0012 Score=70.58 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=33.3
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCC-CCCceEEEecCCCC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPT-LKDLSILMIESGPE 548 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~-~~~~~v~~~e~~~~ 548 (595)
.++.+||+|||||++|+++|..|++... ..+++|+|+|++..
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~ 44 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR 44 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence 3456799999999999999999998610 01389999998763
No 286
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.86 E-value=0.001 Score=70.16 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=31.6
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+||+|||+|++|+++|+.+++. |.+|+|+|+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~----G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK----GFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC----CCeEEEEeCCCC
Confidence 5999999999999999999998 999999999753
No 287
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.85 E-value=0.0012 Score=70.96 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=33.6
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+..+||+|||+|.+|+++|+.+++. |.+|+|||+.+.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~----G~~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRA----GRRVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHc----CCeEEEEEccCC
Confidence 3468999999999999999999998 999999999774
No 288
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.83 E-value=0.0011 Score=72.02 Aligned_cols=37 Identities=35% Similarity=0.524 Sum_probs=33.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCC---ceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKD---LSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~---~~v~~~e~~~~ 548 (595)
...+||+|||||.+|+++|+.+++. | .+|+|||+.+.
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~----G~~~~~V~lleK~~~ 42 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAER----SGGKLSVAVVSKTQP 42 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHh----CCCCCcEEEEEcccC
Confidence 3468999999999999999999998 7 89999998764
No 289
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.83 E-value=0.0014 Score=68.77 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=33.4
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+...+|+|||||++|+++|..|.+. |++|+|+|+++.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~----G~~v~vfE~~~~ 44 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRRE----GHTVVVFEREKQ 44 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhc----CCeEEEEecCCC
Confidence 3457999999999999999999998 999999998764
No 290
>KOG2853|consensus
Probab=96.82 E-value=0.00086 Score=64.07 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=35.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~ 550 (595)
.++||+|||||.+|++.|+.|.......|++|+|+|+.....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 467999999999999999999876555689999999877543
No 291
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.82 E-value=0.0011 Score=72.17 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=33.1
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||+|.+|+++|+.++++ |.+|+|||+.+.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~----G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH----GFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc----CCcEEEEEcCCC
Confidence 468999999999999999999998 999999998764
No 292
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.80 E-value=0.0012 Score=71.77 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=32.9
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||||.+|+++|+.+++. |.+|+|||+...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~----G~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA----GLKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEEccCC
Confidence 468999999999999999999998 999999998753
No 293
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.78 E-value=0.0013 Score=70.37 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=31.9
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
...+||+||||||+|+++|..|++. |++|+|+|..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~----G~~v~li~~~ 244 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK----GLRTAMVAER 244 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecC
Confidence 4468999999999999999999998 9999999864
No 294
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.78 E-value=0.0012 Score=71.69 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
||+|||||++|+++|+.+++. |.+|+|||+.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~----G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA----GLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC----CCcEEEEeccCC
Confidence 899999999999999999998 999999998764
No 295
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.77 E-value=0.0013 Score=74.36 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=32.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+||||||+|+++|+.|++. |++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~----G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA----GHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEecccc
Confidence 346999999999999999999998 999999998763
No 296
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.73 E-value=0.0014 Score=70.90 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=33.1
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||||||+|.+|+++|+.++++ |.+|+|||+.+.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~----G~~VivlEk~~~ 45 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAAR----GLDTLVVEKSAH 45 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHC----CCcEEEEEcCCC
Confidence 368999999999999999999998 999999998864
No 297
>PLN02546 glutathione reductase
Probab=96.73 E-value=0.0017 Score=69.65 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=32.9
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecC
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIES 545 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~ 545 (595)
+...+|||+|||||++|..+|..+++. |.+|+|+|+
T Consensus 75 ~~~~~yDvvVIG~GpaG~~aA~~aa~~----G~~V~liE~ 110 (558)
T PLN02546 75 ERHYDFDLFTIGAGSGGVRASRFASNF----GASAAVCEL 110 (558)
T ss_pred cccCCCCEEEECCCHHHHHHHHHHHHC----CCeEEEEec
Confidence 445679999999999999999999998 999999995
No 298
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.71 E-value=0.0028 Score=72.77 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=43.2
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCC-CCCCCCc-hhhccHhHHHHHHHcCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSK-SSSYSNR-VSSINSSSKQLFETIGA 579 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~-~~~~~~r-~~~l~~~~~~~l~~lg~ 579 (595)
..+|+||||||+|+++|..|++. |++|+|+|+.+........ -+.+ | ...+-....+.|+++|+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~----G~~VtV~E~~~~~GG~l~~gip~~--rl~~e~~~~~~~~l~~~Gv 495 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY----GVDVTVYEALHVVGGVLQYGIPSF--RLPRDIIDREVQRLVDIGV 495 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCcceeeccCCcc--CCCHHHHHHHHHHHHHCCC
Confidence 46999999999999999999999 9999999987632210000 0111 1 11233445666777776
No 299
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.71 E-value=0.0044 Score=59.53 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=55.2
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCC-C--ceEEEE----c-----CCcEEEecEEEEecCCCchhh
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPL-N--NVKIKF----E-----SGESIECKLLLGTDGARSQVR 234 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~-~--~v~v~~----~-----dG~~~~adlvVgADG~~S~vR 234 (595)
|.+++..|...|.+.+.+.|++++++++|+++... ++ . ++.+.. . +..+++|++||.|+|.+|.+.
T Consensus 99 ~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~--~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 99 YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILR--EDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEe--CCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 56789999999999999999999999999999752 22 1 222221 1 224799999999999999999
Q ss_pred hhcC
Q psy9964 235 NAMN 238 (595)
Q Consensus 235 ~~l~ 238 (595)
+.+.
T Consensus 177 ~~l~ 180 (257)
T PRK04176 177 SVLA 180 (257)
T ss_pred HHHH
Confidence 9883
No 300
>PLN02815 L-aspartate oxidase
Probab=96.70 E-value=0.0017 Score=70.21 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=32.9
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.+..+||+|||+|.+|+++|+.+++. | +|+|||+.+.
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~----G-~VvlleK~~~ 62 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEY----G-TVAIITKDEP 62 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhC----C-CEEEEECCCC
Confidence 34568999999999999999999998 8 8999998774
No 301
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.69 E-value=0.051 Score=56.53 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC-----cEEEecEEEEecCCCch-hhhhcCC
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG-----ESIECKLLLGTDGARSQ-VRNAMNV 239 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG-----~~~~adlvVgADG~~S~-vR~~l~~ 239 (595)
..+...|.+.+.+.|++++++++|++++. .++.+++...++ .++++|.||.|.|.+|. +.+.++.
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~---~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~ 267 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKT---DGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGD 267 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEE---eCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCC
Confidence 46778888888889999999999999985 345666655443 37999999999999974 4444443
No 302
>PLN02576 protoporphyrinogen oxidase
Probab=96.69 E-value=0.0017 Score=69.50 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=32.2
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||||++||++|+.|++.. |.+|+|+|+.+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~---g~~v~vlEa~~r 47 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKH---GVNVLVTEARDR 47 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhc---CCCEEEEecCCC
Confidence 4569999999999999999998851 689999999863
No 303
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.69 E-value=0.0017 Score=71.12 Aligned_cols=35 Identities=17% Similarity=0.455 Sum_probs=31.9
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..+||+|||+|.+|+++|+.+++. |.+|+|||+..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~----G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGEL----GYNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEecCC
Confidence 467999999999999999999998 99999999744
No 304
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.67 E-value=0.0018 Score=70.26 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.9
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||+|.+|+++|+.+++. |.+|+|||+...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~----G~~V~lleK~~~ 41 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS----GQSCALLSKVFP 41 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEEccCC
Confidence 467999999999999999999998 999999999754
No 305
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.67 E-value=0.0016 Score=65.40 Aligned_cols=29 Identities=38% Similarity=0.607 Sum_probs=25.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEec
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIE 544 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e 544 (595)
||+|||||.+|+.+|+++|+. |.+|+|+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~----G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM----GAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----T--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCCEEEEe
Confidence 899999999999999999999 99999993
No 306
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.67 E-value=0.0016 Score=68.01 Aligned_cols=35 Identities=37% Similarity=0.514 Sum_probs=30.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||||||+|.+|+++|+.++ . |.+|+|||+.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~----G~~V~lleK~~~ 37 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-K----DLKILMVSKGKL 37 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-c----CCCEEEEecCCC
Confidence 3579999999999999999974 5 899999999764
No 307
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.63 E-value=0.0019 Score=69.63 Aligned_cols=35 Identities=37% Similarity=0.501 Sum_probs=32.6
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.+||+|||+|.+|+++|+.+++. |.+|+|||+.+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~----G~~v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADS----GLEPLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCC
Confidence 67999999999999999999998 999999998753
No 308
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.63 E-value=0.0018 Score=74.67 Aligned_cols=36 Identities=28% Similarity=0.530 Sum_probs=33.1
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+||||||+|+++|+.|++. |++|+|+|+.+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~----G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA----GARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCC
Confidence 467999999999999999999998 999999998764
No 309
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.63 E-value=0.0021 Score=64.55 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=32.6
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
-+++|+|||++|+++|+.|+.. |++|.|+|+.|..
T Consensus 125 ~svLVIGGGvAGitAAl~La~~----G~~v~LVEKepsi 159 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADM----GFKVYLVEKEPSI 159 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHc----CCeEEEEecCCcc
Confidence 4899999999999999999999 9999999998853
No 310
>KOG1276|consensus
Probab=96.57 E-value=0.0048 Score=61.20 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=49.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccC--C-CCCC--CC--CCchh----hccHhHHHHHHHc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH--F-SKSS--SY--SNRVS----SINSSSKQLFETI 577 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~--~-~~~~--~~--~~r~~----~l~~~~~~~l~~l 577 (595)
...+|+|||||+.||++|++|++.. ....++|+|+.+...-- . ..+. -| .+|.. .....++.++++|
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~--p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLG--PDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcC--CCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 3569999999999999999999982 13456679987742110 0 0000 01 23432 3445789999999
Q ss_pred CCcccccc
Q psy9964 578 GAWDHIES 585 (595)
Q Consensus 578 g~~~~~~~ 585 (595)
|+-+++..
T Consensus 88 Gl~~e~~~ 95 (491)
T KOG1276|consen 88 GLEDELQP 95 (491)
T ss_pred Cccceeee
Confidence 99877655
No 311
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.53 E-value=0.0042 Score=69.14 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=31.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
....|+||||||+|+++|+.|++. |.+|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~----Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS----GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC----CCeEEEEcccc
Confidence 445899999999999999999998 99999999853
No 312
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.53 E-value=0.0035 Score=66.09 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=34.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
....+|+|||||++||++|+.|.+....+|.+|+|+|+.+.
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~ 60 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV 60 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence 34568999999999999999999863334789999999874
No 313
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.52 E-value=0.0025 Score=68.27 Aligned_cols=37 Identities=38% Similarity=0.670 Sum_probs=33.6
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+||||+|.+|.++|..|+.. |++|+|||+++.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~----g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDA----GLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCC----CCeEEEEeCCCC
Confidence 4579999999999999999999966 999999999963
No 314
>PRK14727 putative mercuric reductase; Provisional
Probab=96.52 E-value=0.0029 Score=67.14 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=33.2
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
....|||+|||||++|+++|..|++. |.+|+++|+.
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~----g~~v~~ie~~ 48 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEH----GARVTIIEGA 48 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEEcc
Confidence 34679999999999999999999998 9999999986
No 315
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.52 E-value=0.0026 Score=68.35 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=31.5
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+||+|||+|.+|+++|+.++ . |.+|+|||+.+.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~----G~~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-S----HLRVGLITKDTL 42 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-c----CCCEEEEEccCC
Confidence 45689999999999999999985 4 889999999764
No 316
>PRK12839 hypothetical protein; Provisional
Probab=96.51 E-value=0.0029 Score=68.29 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=33.9
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
....+||+|||+|.+|+++|+.+++. |.+|+|||+.+.
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~----g~~v~~iek~~~ 42 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYG----GAKVLVVEKAST 42 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCC
Confidence 34578999999999999999999998 999999998753
No 317
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.51 E-value=0.0025 Score=67.82 Aligned_cols=34 Identities=29% Similarity=0.540 Sum_probs=30.8
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.+||+|||+|++|+++|+.+++. |. |+|||+.+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~----G~-V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ----GR-VIVLSKAPV 35 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC----CC-EEEEEccCC
Confidence 46999999999999999999987 87 999999854
No 318
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.50 E-value=0.011 Score=62.50 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=32.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~----G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA----GVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCC
Confidence 456899999999999999999998 999999998763
No 319
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.50 E-value=0.0059 Score=64.61 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=32.7
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~----G~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA----GHKVTVFERADR 177 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC----CCcEEEEecCCC
Confidence 456999999999999999999998 999999998764
No 320
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.50 E-value=0.0026 Score=68.79 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHh----cCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIA----QNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~----~~~~~~~~~v~~~e~~~~ 548 (595)
||+|||+|.+|+++|+.++ +. |.+|+|||+.+.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~----G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK----GLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC----CCeEEEEEccCC
Confidence 8999999999999999998 55 999999998764
No 321
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.49 E-value=0.0025 Score=68.71 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=31.5
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||+|.+|+++|+.+ +. |.+|+|||+.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~----G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ER----GKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hc----CCCEEEEEccCC
Confidence 457999999999999999999 76 999999999763
No 322
>PLN02612 phytoene desaturase
Probab=96.49 E-value=0.24 Score=53.68 Aligned_cols=63 Identities=8% Similarity=0.172 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhc
Q psy9964 173 LIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAM 237 (595)
Q Consensus 173 ~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l 237 (595)
.|.+.|.+.+++.|++|+++++|++|+.+ +++..+.|++.+|+++++|.||-|... ...++.+
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~g~v~~v~~~~G~~~~ad~VI~a~p~-~~l~~Ll 371 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELN-DDGTVKHFLLTNGSVVEGDVYVSATPV-DILKLLL 371 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEEC-CCCcEEEEEECCCcEEECCEEEECCCH-HHHHHhC
Confidence 46688888887789999999999999863 122234577789999999999999764 4555544
No 323
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.49 E-value=0.0035 Score=65.72 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=32.1
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+||||||+|+.+|..|+++. .|.+|+|+|+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~--~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH--DGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC--CCCeEEEEecCCC
Confidence 3458999999999999999998621 2899999999874
No 324
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.48 E-value=0.036 Score=56.22 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=55.3
Q ss_pred ccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceE-EEEcCCcEEEecEEEEecCCCchh
Q psy9964 164 RISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVK-IKFESGESIECKLLLGTDGARSQV 233 (595)
Q Consensus 164 ~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~-v~~~dG~~~~adlvVgADG~~S~v 233 (595)
+.+..++-..|.+.|.+.+++.|++|+.+++|++++. +++.++ |++++|+ +++|.||-|.|.+|.-
T Consensus 139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~---~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDV---DGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEE---ETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred cccccccccchhhhhHHHHHHhhhhccccccccchhh---cccccccccccccc-cccceeEeccccccee
Confidence 3456778899999999999999999999999999996 566777 9999998 9999999999998765
No 325
>KOG0814|consensus
Probab=96.48 E-value=0.001 Score=56.86 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=43.6
Q ss_pred cEEEEEE--CCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcC
Q psy9964 18 SCILVSM--GGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFG 85 (595)
Q Consensus 18 ~~~~i~~--~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~ 85 (595)
.+|++.+ +++++|||+=..+. -.+..-+++.| -++.|-+.||.|.|||.|-.++....+
T Consensus 22 ytYll~d~~~~~AviIDPV~et~------~RD~qlikdLg---l~LiYa~NTH~HADHiTGtg~Lkt~~p 82 (237)
T KOG0814|consen 22 YTYLLGDHKTGKAVIIDPVLETV------SRDAQLIKDLG---LDLIYALNTHVHADHITGTGLLKTLLP 82 (237)
T ss_pred EEEEeeeCCCCceEEecchhhcc------cchHHHHHhcC---ceeeeeecceeecccccccchHHHhcc
Confidence 5688865 56799999864322 12334556667 478999999999999999999988543
No 326
>PLN02676 polyamine oxidase
Probab=96.47 E-value=0.0028 Score=67.12 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=32.5
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCc-eEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDL-SILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~-~v~~~e~~~~ 548 (595)
..+||+|||||++|+++|+.|++. |. +|+|+|++..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~----g~~~v~vlE~~~~ 61 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA----GIEDILILEATDR 61 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc----CCCcEEEecCCCC
Confidence 467999999999999999999998 87 6999998764
No 327
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.45 E-value=0.0027 Score=68.35 Aligned_cols=33 Identities=36% Similarity=0.646 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCC-ceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKD-LSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~-~~v~~~e~~~~ 548 (595)
|+||||||.+|+.+|..|++. + ++|+|||+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~----~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED----VSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccC----CCCeEEEEecCCC
Confidence 899999999999999999998 6 79999999974
No 328
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.44 E-value=0.0031 Score=65.36 Aligned_cols=36 Identities=39% Similarity=0.554 Sum_probs=33.5
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+..||++|+||||+|..+|..+++. |.+|+++|+.+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~----G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL----GLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC----CCCEEEEeecC
Confidence 4679999999999999999999999 98899999984
No 329
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.44 E-value=0.0057 Score=67.57 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=32.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+||||||+|+++|..|++. |.+|+|+|+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~----G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN----GVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCC
Confidence 346999999999999999999998 999999998763
No 330
>PRK08275 putative oxidoreductase; Provisional
Probab=96.44 E-value=0.003 Score=68.27 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=32.4
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||||.+|+++|+.+++.. +|.+|+|||+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g--~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERN--PALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhC--CCCeEEEEeCCCC
Confidence 4589999999999999999998741 1689999998874
No 331
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.43 E-value=0.0034 Score=67.00 Aligned_cols=40 Identities=30% Similarity=0.508 Sum_probs=35.6
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcc
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~ 550 (595)
....+||||||||.+|+.+|+.++.. |++|+|+|+.+...
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~----g~~V~l~~K~~~~r 42 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEA----GLKVALLSKAPPKR 42 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhc----CCcEEEEEccccCC
Confidence 34578999999999999999999999 99999999887544
No 332
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.43 E-value=0.0035 Score=65.88 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=33.3
Q ss_pred CCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 507 ~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.....+|+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~----G~~V~vie~~~ 166 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKA----GHSVTVFEALH 166 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC----CCcEEEEecCC
Confidence 34567999999999999999999998 99999999875
No 333
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.43 E-value=0.003 Score=68.49 Aligned_cols=38 Identities=32% Similarity=0.298 Sum_probs=32.1
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||+|.+|+++|+.+++.. +|.+|+|||+.+.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g--~g~~V~lleK~~~ 40 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEAN--PNLKIALISKVYP 40 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhC--CCCcEEEEEccCC
Confidence 4679999999999999999998751 1579999999764
No 334
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.40 E-value=0.0031 Score=70.97 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=32.1
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.-+|+||||||+|+++|+.|++. |++|+|+|+.+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~----G~~VtV~Ek~~~ 573 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARA----GHPVTVFEREEN 573 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCeEEEEecccc
Confidence 45899999999999999999998 999999998763
No 335
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.38 E-value=0.0031 Score=71.81 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=31.8
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..+|+||||||+|+++|+.|++. |++|+|+|+.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~----G~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE----GFPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCC
Confidence 45899999999999999999998 99999999876
No 336
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.38 E-value=0.0033 Score=66.63 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=31.1
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
.|||+|||+|++|+.+|+.+++. |.+|+++|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~----G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY----GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC----CCeEEEEecc
Confidence 58999999999999999999998 9999999974
No 337
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.37 E-value=0.0036 Score=68.24 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=32.4
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||||.+|+++|+.+++.. .|.+|+|||+.+.
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~--~G~~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWA--PDLKVLIVEKANI 47 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhC--CCCeEEEEECCCc
Confidence 4689999999999999999998741 1789999998764
No 338
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.37 E-value=0.0035 Score=66.31 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.0
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
..|||+|||||++|.++|..+++. .|.+|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~---~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATL---YKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHh---cCCEEEEEecc
Confidence 468999999999999999999993 17999999973
No 339
>PLN02785 Protein HOTHEAD
Probab=96.34 E-value=0.0042 Score=67.09 Aligned_cols=36 Identities=36% Similarity=0.749 Sum_probs=32.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...||+||||||.+|+.+|..|++ +.+|+|||+++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-----~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-----NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-----CCcEEEEecCCC
Confidence 456999999999999999999998 379999999873
No 340
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.34 E-value=0.0042 Score=66.95 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=32.5
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+||||||+| +|+++|+..++. |.+|+|||+.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~----G~~v~v~Ek~~~ 49 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHEL----GLSVLIVEKSSY 49 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHC----CCcEEEEecCCC
Confidence 457899999999 899999999998 999999998753
No 341
>PRK07233 hypothetical protein; Provisional
Probab=96.33 E-value=0.26 Score=51.58 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhc
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAM 237 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l 237 (595)
..|.+.|.+.+.+.|++|+++++|++|+. +++.+++...+|+++++|.||-|-..+. +.+.+
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~---~~~~~~~~~~~~~~~~ad~vI~a~p~~~-~~~ll 259 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVI---DGGGVTGVEVDGEEEDFDAVISTAPPPI-LARLV 259 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEE---cCCceEEEEeCCceEECCEEEECCCHHH-HHhhc
Confidence 34777888888778899999999999986 3456665667888999999998887653 34444
No 342
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.33 E-value=0.24 Score=52.43 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhc
Q psy9964 173 LIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAM 237 (595)
Q Consensus 173 ~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l 237 (595)
.|-+.|.+.+.+ ++|+++++|++|+. .+++++|++.+|+++.+|.||-|-- ....++.+
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~---~~~~~~v~~~~g~~~~ad~VI~a~p-~~~~~~ll 285 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSK---QGDRYEISFANHESIQADYVVLAAP-HDIAETLL 285 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEE---cCCEEEEEECCCCEEEeCEEEECCC-HHHHHhhc
Confidence 344555555532 57999999999996 4567899999999999999998873 33344444
No 343
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.32 E-value=0.019 Score=54.98 Aligned_cols=69 Identities=7% Similarity=0.094 Sum_probs=54.0
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCC--CceEEEEc-----------CCcEEEecEEEEecCCCchh
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPL--NNVKIKFE-----------SGESIECKLLLGTDGARSQV 233 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~--~~v~v~~~-----------dG~~~~adlvVgADG~~S~v 233 (595)
+..++..+.+.|.+++.+.|++++++++|+++... ++ .-..|... |..+++|++||.|+|..|.+
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v 172 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEI 172 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchH
Confidence 45688899999999999899999999999999863 22 11222222 22379999999999999999
Q ss_pred hhhc
Q psy9964 234 RNAM 237 (595)
Q Consensus 234 R~~l 237 (595)
.+.+
T Consensus 173 ~~~l 176 (254)
T TIGR00292 173 VAVC 176 (254)
T ss_pred HHHH
Confidence 8887
No 344
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.30 E-value=0.0046 Score=68.30 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=33.4
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
....+|+|||||++|+++|+.|++. |++|+|+|++..
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~----g~~v~v~E~~~r 272 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSM----GFKVVVLEGRAR 272 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecccc
Confidence 4567999999999999999999998 999999998763
No 345
>KOG0042|consensus
Probab=96.29 E-value=0.0026 Score=64.77 Aligned_cols=58 Identities=26% Similarity=0.386 Sum_probs=45.6
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHH
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFET 576 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~ 576 (595)
...+||+|||||-+|.-+|+--+-+ |++|.+||++...+. -+.|.+-|-.+.++.|++
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TR----GLktaLVE~~DF~SG-------TSSkSTKLiHGGVRYLek 122 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATR----GLKTALVEAGDFASG-------TSSKSTKLIHGGVRYLEK 122 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcc----cceeEEEecccccCC-------ccccchhhhcccHHHHHH
Confidence 3469999999999998888776666 999999999885432 256777777777777765
No 346
>PLN02529 lysine-specific histone demethylase 1
Probab=96.27 E-value=0.0046 Score=67.89 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=33.4
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
....+|+|||||++|+++|..|++. |++|+|+|+++.
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~----g~~v~v~E~~~~ 194 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSF----GFKVVVLEGRNR 194 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHc----CCcEEEEecCcc
Confidence 3567999999999999999999998 999999998763
No 347
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.26 E-value=0.0078 Score=63.53 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.2
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
....+|+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~----g~~V~lie~~~~ 174 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK----GYDVTIFEARDK 174 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCC
Confidence 3456999999999999999999998 999999998763
No 348
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.26 E-value=0.0027 Score=65.63 Aligned_cols=31 Identities=35% Similarity=0.610 Sum_probs=28.9
Q ss_pred EEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 514 VISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 514 ~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+|||||++|+++|+.|++. |.+|+|+|+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~----G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE----GLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc----CCcEEEEecCcc
Confidence 6899999999999999998 999999998774
No 349
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.23 E-value=0.0045 Score=67.50 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=31.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
.+|||+|+|+|+.|.++|..+++. |++|+|+|+.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~----G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER----GLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCC
Confidence 478999999999999999999998 9999999964
No 350
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.23 E-value=0.0044 Score=66.16 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=30.3
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.+||+|||+|.+|+++|+.+++ |.+|+|||+.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-----g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-----EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-----CCCEEEEeccCC
Confidence 5799999999999999999853 789999998874
No 351
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.23 E-value=0.0044 Score=70.83 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=33.2
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||||.+|+++|+.+++. |.+|+|||+.+.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~----G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEH----GANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHC----CCeEEEEecccc
Confidence 468999999999999999999998 999999998774
No 352
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.22 E-value=0.0048 Score=67.03 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=30.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||||++|+++|+.+++ +.+|+|+|+.+.
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~-----~~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGP-----RARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHh-----CCCEEEEeCCCC
Confidence 46799999999999999999985 479999998764
No 353
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.21 E-value=0.0045 Score=65.81 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=31.1
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
|||+|||||++|+.+|.++++. |.+|+|+|+.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~----G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM----GAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC----CCCEEEEeccc
Confidence 6999999999999999999998 99999999864
No 354
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.21 E-value=0.0046 Score=72.53 Aligned_cols=37 Identities=22% Similarity=0.440 Sum_probs=33.7
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+..+||||||+|.+|+++|+..++. |.+|+|||+.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~----Ga~VivlEK~~~ 443 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASC----GAQVILLEKEAK 443 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEEccCC
Confidence 4568999999999999999999998 999999999764
No 355
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.20 E-value=0.0059 Score=66.32 Aligned_cols=37 Identities=27% Similarity=0.501 Sum_probs=33.6
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+||+|||+|++|+++|+.+++. |.+|+|||+.+.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~----g~~v~~iek~~~ 46 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWH----GLKVIVVEKDPV 46 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCC
Confidence 4578999999999999999999998 999999998763
No 356
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.18 E-value=0.0044 Score=67.10 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=31.6
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.+||+|||||++|+++|+.+++.. +|.+|+|||+.+.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g--~g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEAN--PHLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhC--CCCcEEEEEccCC
Confidence 579999999999999999998751 2589999998764
No 357
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.13 E-value=0.059 Score=56.32 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=48.1
Q ss_pred ceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhh
Q psy9964 166 SYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVR 234 (595)
Q Consensus 166 ~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR 234 (595)
++......+...+...+...|.+|+++++|++|+. .+++|+|++.||++++||.||-|=......+
T Consensus 203 ~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~---~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 203 GLTVGMGGLSLALALAAEELGGEIRLNTPVTRIER---EDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp TEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEE---ESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred ceeecccchhHHHHHHHhhcCceeecCCcceeccc---cccccccccccceEEecceeeecCchhhhhh
Confidence 34444455555555555545669999999999997 5689999999999999999998876654444
No 358
>KOG2665|consensus
Probab=96.08 E-value=0.0051 Score=58.38 Aligned_cols=42 Identities=24% Similarity=0.526 Sum_probs=33.6
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
.....||.||||||+||++.|-.|.-.. ++++|+|+|+....
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrh--p~l~V~vleke~~l 85 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRH--PSLKVAVLEKEKSL 85 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcC--CCceEEeeehhhhh
Confidence 3446799999999999999998776431 38999999987654
No 359
>KOG1399|consensus
Probab=96.06 E-value=0.0056 Score=63.18 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=33.4
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
...+|+|||||++||++|.+|.+. |+.|+++|+.+..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~----g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE----GHEVVVFERTDDI 41 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC----CCCceEEEecCCc
Confidence 456999999999999999999998 9999999988743
No 360
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.05 E-value=0.013 Score=64.51 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=32.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~----G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK----GHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCC
Confidence 346899999999999999999998 999999998764
No 361
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.04 E-value=0.012 Score=64.70 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=32.7
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~----G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA----GVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc----CCcEEEEeCCCC
Confidence 356899999999999999999998 999999998874
No 362
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.98 E-value=0.0071 Score=63.86 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+|+|||||++|+++|..+++. |.+|+|+|+.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~----g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN----GKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC----CCcEEEEECCc
Confidence 799999999999999999998 99999999875
No 363
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.97 E-value=0.021 Score=52.79 Aligned_cols=62 Identities=11% Similarity=0.233 Sum_probs=49.5
Q ss_pred eeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCch
Q psy9964 168 IVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQ 232 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~ 232 (595)
...+.++.+.|.+.+++.+++++++++|++++. .+++..|++++|++++||.||-|-|..|.
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~---~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRR---DGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEE---ETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEE---eccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 478888999999999888899999999999997 45669999999988999999999998665
No 364
>KOG1238|consensus
Probab=95.96 E-value=0.0073 Score=63.50 Aligned_cols=39 Identities=36% Similarity=0.795 Sum_probs=34.9
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
...||.||||||-+|+.+|..|++.+ ..+|+|+|++...
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~---~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENP---NWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCC---CceEEEEecCCCC
Confidence 45799999999999999999999984 7999999998753
No 365
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.96 E-value=0.0066 Score=65.28 Aligned_cols=35 Identities=34% Similarity=0.589 Sum_probs=30.7
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||+|.+|+++|+.+++. .+|+|||+.+.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-----~~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-----RRVAVLSKGPL 41 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-----CCEEEEeccCC
Confidence 457999999999999999999763 68999998764
No 366
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.94 E-value=0.0072 Score=67.92 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=32.1
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
...+|+||||||+|+++|..|++. |++|+|+|+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~----G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR----GYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC----CCeEEEEecCC
Confidence 456999999999999999999998 99999999865
No 367
>KOG2960|consensus
Probab=95.84 E-value=0.0032 Score=56.04 Aligned_cols=35 Identities=46% Similarity=0.605 Sum_probs=30.2
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.||+|||+|-+|+++||..+++. ++++|.+||+.-
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~r--PdlkvaIIE~SV 111 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNR--PDLKVAIIESSV 111 (328)
T ss_pred cceEEECCCccccceeeeeeccC--CCceEEEEEeee
Confidence 49999999999999999998542 389999999764
No 368
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.82 E-value=0.011 Score=59.94 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=32.5
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+|||||++|+++|..|++. |.+|+++|+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL----GYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCC
Confidence 345999999999999999999998 999999998764
No 369
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.81 E-value=0.019 Score=60.90 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=32.0
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+|+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~----g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA----GHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCC
Confidence 35999999999999999999998 999999998763
No 370
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.78 E-value=0.0074 Score=65.69 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=29.4
Q ss_pred EEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 513 v~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
|+|||+|++|+++|+.+++. |.+|+|||+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~----G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL----GYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHc----CCCEEEEEecC
Confidence 79999999999999999998 99999999876
No 371
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=95.77 E-value=0.0061 Score=53.02 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=43.5
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCCCccEEEcCc
Q psy9964 16 GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHP 95 (595)
Q Consensus 16 ~~~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~ 95 (595)
+-|++++..++++|+||+-.-. ....+.+...+ -+.+|++||. ||+.....+.+++ .++||++..
T Consensus 22 dfng~~~~~p~GnilIDP~~ls-------~~~~~~l~a~g----gv~~IvLTn~--dHvR~A~~ya~~~--~a~i~~p~~ 86 (199)
T PF14597_consen 22 DFNGHAWRRPEGNILIDPPPLS-------AHDWKHLDALG----GVAWIVLTNR--DHVRAAEDYAEQT--GAKIYGPAA 86 (199)
T ss_dssp EEEEEEE--TT--EEES------------HHHHHHHHHTT------SEEE-SSG--GG-TTHHHHHHHS----EEEEEGG
T ss_pred CceeEEEEcCCCCEEecCcccc-------HHHHHHHHhcC----CceEEEEeCC--hhHhHHHHHHHHh--CCeeeccHH
Confidence 4589988888999999986321 12345555543 5999999975 9999999999976 499999998
Q ss_pred cchhhHH
Q psy9964 96 TKAIAPI 102 (595)
Q Consensus 96 ~~~~~~~ 102 (595)
+.+..+.
T Consensus 87 d~~~~p~ 93 (199)
T PF14597_consen 87 DAAQFPL 93 (199)
T ss_dssp GCCC-SS
T ss_pred HHhhCCC
Confidence 8864443
No 372
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.77 E-value=0.01 Score=64.46 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=32.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||+|||+|++|+++|+.+++. |.+|+|||+.+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~----g~~v~l~ek~~~ 50 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIA----GLKVLLVERTEY 50 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCC
Confidence 367999999999999999999998 999999998653
No 373
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.75 E-value=0.0038 Score=62.28 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=46.6
Q ss_pred cEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHHhcCC---CccEEEcC
Q psy9964 18 SCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGY---AGPIYMTH 94 (595)
Q Consensus 18 ~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~---~~~v~~~~ 94 (595)
|..+|+.+.+.|+||+=.... ....... -+..+.+. ..|.+|+.||+|.||+||+..+.++-.. .++|.++.
T Consensus 127 NITfveGdtg~IViDpL~t~~-tA~aAld--l~~~~~g~--rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~ 201 (655)
T COG2015 127 NITFVEGDTGWIVIDPLVTPE-TAKAALD--LYNQHRGQ--RPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPA 201 (655)
T ss_pred ceEEEcCCcceEEEcccCCcH-HHHHHHH--HHHHhcCC--CCeEEEEeecccccccCCeeeccCHHHcccCceeEecch
Confidence 788888788899999864211 1011111 12234443 5799999999999999999888664321 34555554
Q ss_pred c
Q psy9964 95 P 95 (595)
Q Consensus 95 ~ 95 (595)
.
T Consensus 202 G 202 (655)
T COG2015 202 G 202 (655)
T ss_pred h
Confidence 4
No 374
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.72 E-value=0.085 Score=55.85 Aligned_cols=73 Identities=10% Similarity=0.180 Sum_probs=56.6
Q ss_pred ceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEc---CCc--EEEecEE-EEecCCCchhhhhcCC
Q psy9964 166 SYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFE---SGE--SIECKLL-LGTDGARSQVRNAMNV 239 (595)
Q Consensus 166 ~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~---dG~--~~~adlv-VgADG~~S~vR~~l~~ 239 (595)
+..++-..+.+.|.+.+.+.|++|+++++|++++.. +++.+.|+.. +|+ ++++|.| ++|+|-.+.+++.+|.
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~--~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi 249 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQ--SDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGI 249 (483)
T ss_pred CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCC
Confidence 356788889999999998899999999999999852 3345666543 343 6899987 6777777889998886
Q ss_pred C
Q psy9964 240 Q 240 (595)
Q Consensus 240 ~ 240 (595)
+
T Consensus 250 ~ 250 (483)
T TIGR01320 250 P 250 (483)
T ss_pred C
Confidence 5
No 375
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=95.71 E-value=0.1 Score=55.33 Aligned_cols=75 Identities=11% Similarity=0.157 Sum_probs=56.1
Q ss_pred ccceeeeHHHHHHHHHHHHhcCC-ceEEeCCeEeEEecCCCCCCceEEEEc---CCc--EEEecEEEEe-cCCCchhhhh
Q psy9964 164 RISYIVENDLIIDAVTKKLNTLN-IDIVYQKKVAHYELPEQPLNNVKIKFE---SGE--SIECKLLLGT-DGARSQVRNA 236 (595)
Q Consensus 164 ~~~~~i~R~~L~~~L~~~~~~~g-v~i~~~~~v~~v~~~~~~~~~v~v~~~---dG~--~~~adlvVgA-DG~~S~vR~~ 236 (595)
+.+..++-..+.+.|.+.+++.| ++|+++++|++++.. +++.+.|+.. +|+ +++|++||.| +|-.+.+++.
T Consensus 175 p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~--~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~ 252 (494)
T PRK05257 175 EIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRN--DDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQK 252 (494)
T ss_pred CCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEEC--CCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHH
Confidence 34568889999999999998865 899999999999862 3333666653 364 6999977655 5555678888
Q ss_pred cCCC
Q psy9964 237 MNVQ 240 (595)
Q Consensus 237 l~~~ 240 (595)
+|.+
T Consensus 253 ~Gi~ 256 (494)
T PRK05257 253 SGIP 256 (494)
T ss_pred cCCC
Confidence 8765
No 376
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.67 E-value=0.011 Score=63.14 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=31.1
Q ss_pred CCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 506 LGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 506 ~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+....+||+|||+|.+|+++|+.++ +.+|+|||+.+.
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAl~Aa------~~~V~lleK~~~ 41 (513)
T PRK07512 5 LRILTGRPVIVGGGLAGLMAALKLA------PRPVVVLSPAPL 41 (513)
T ss_pred ccCCcCCEEEECchHHHHHHHHHhC------cCCEEEEECCCC
Confidence 3455689999999999999999884 358999999875
No 377
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.66 E-value=0.38 Score=50.13 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=47.4
Q ss_pred eeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCce-EEEEcCCcEEEecEEEEecCCCch
Q psy9964 169 VENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNV-KIKFESGESIECKLLLGTDGARSQ 232 (595)
Q Consensus 169 i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v-~v~~~dG~~~~adlvVgADG~~S~ 232 (595)
++-..+...|.+.+.+.|++|+++++|++++. +++.+ .|+..+| ++++|.||-|.|.+|.
T Consensus 198 ~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~---~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLV---EGGRITGVQTGGG-VITADAYVVALGSYST 258 (416)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe---cCCEEEEEEeCCc-EEeCCEEEECCCcchH
Confidence 44557788888888889999999999999985 33444 4555544 7999999999999984
No 378
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.65 E-value=0.2 Score=53.54 Aligned_cols=65 Identities=8% Similarity=0.100 Sum_probs=52.7
Q ss_pred eeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC----cEEEecEEEEecCCCch-hhh
Q psy9964 168 IVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG----ESIECKLLLGTDGARSQ-VRN 235 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG----~~~~adlvVgADG~~S~-vR~ 235 (595)
.+.-..|...|...+.+.|++++.+++|+++.. +++.+.|+..++ .+++++.||.|+|.+|. +.+
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~---~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARR---EGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEE---cCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence 467788888888888889999999999999986 345567777665 26999999999999884 444
No 379
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.55 E-value=0.019 Score=59.57 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=31.3
Q ss_pred CceecEEEECCChHHHHHHHHHh-cCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIA-QNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~-~~~~~~~~~v~~~e~~~~ 548 (595)
.....|+|||+||+|+.+|..|. +. |.+|.|+|+.+.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~----g~~VtlfEk~p~ 74 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHE----RVKVDIFEKLPN 74 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhc----CCeEEEEecCCC
Confidence 34458999999999999999764 55 899999999874
No 380
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.50 E-value=0.23 Score=53.17 Aligned_cols=61 Identities=11% Similarity=0.239 Sum_probs=49.1
Q ss_pred eeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcC---Cc--EEEecEEEEecCCCch
Q psy9964 169 VENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFES---GE--SIECKLLLGTDGARSQ 232 (595)
Q Consensus 169 i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~d---G~--~~~adlvVgADG~~S~ 232 (595)
++-..|...|.+.+.+.|++++.+++|+++.. +++.+.|+..+ |+ +++++.||.|.|.+|.
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~---~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARR---ENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE---eCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 56677777888888889999999999999985 34556676654 54 7999999999999873
No 381
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.49 E-value=0.94 Score=47.71 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=35.0
Q ss_pred eEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCc
Q psy9964 188 DIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS 231 (595)
Q Consensus 188 ~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 231 (595)
+|+++++|++|+. .+++++|++.+|+++.+|.||.|=-.+.
T Consensus 235 ~i~~~~~V~~i~~---~~~~~~v~~~~g~~~~~d~vI~a~p~~~ 275 (451)
T PRK11883 235 TIHKGTPVTKIDK---SGDGYEIVLSNGGEIEADAVIVAVPHPV 275 (451)
T ss_pred eEEeCCEEEEEEE---cCCeEEEEECCCCEEEcCEEEECCCHHH
Confidence 7999999999986 4567889999999999999999865543
No 382
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.46 E-value=0.015 Score=63.16 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=31.7
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.-+|+|||+||+|+++|..|++. |.+|+|+|+.+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~----G~~V~v~e~~~~ 171 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM----GHAVTIFEAGPK 171 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCC
Confidence 34899999999999999999998 999999998763
No 383
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.43 E-value=0.75 Score=47.83 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEE-cCCcEEEecEEEEecCCCchhhhhc
Q psy9964 173 LIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKF-ESGESIECKLLLGTDGARSQVRNAM 237 (595)
Q Consensus 173 ~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~-~dG~~~~adlvVgADG~~S~vR~~l 237 (595)
.+.+.|.+.+++.|.+|+++++|++|+. +++++++.. .+|+++.||.||-|--... +.+.+
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~---~~~~~~~~~~~~g~~~~~d~vi~a~p~~~-~~~ll 259 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEA---NAGGIRALVLSGGETLPADAVVLAVPPRH-AASLL 259 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEE---cCCcceEEEecCCccccCCEEEEcCCHHH-HHHhC
Confidence 3445577777667889999999999996 445566544 4788899999999866543 34443
No 384
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.38 E-value=0.056 Score=53.72 Aligned_cols=59 Identities=27% Similarity=0.454 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCch
Q psy9964 171 NDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQ 232 (595)
Q Consensus 171 R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~ 232 (595)
-..+.++|+.++++.||+|+.+++|.+++. ++....+...+|++++||-||-|-|-.|.
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~---~~~~f~l~t~~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEK---DDSGFRLDTSSGETVKCDSLILATGGKSW 168 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEe---cCceEEEEcCCCCEEEccEEEEecCCcCC
Confidence 456889999999999999999999999996 44688999999999999999999887664
No 385
>PLN03000 amine oxidase
Probab=95.37 E-value=0.016 Score=64.23 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=32.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+|||||++|+++|..|++. |++|+|+|+++.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~----G~~V~VlE~~~r 218 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF----GFKVTVLEGRKR 218 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC----CCcEEEEEccCc
Confidence 357999999999999999999998 999999998764
No 386
>KOG4254|consensus
Probab=95.29 E-value=0.014 Score=58.24 Aligned_cols=45 Identities=29% Similarity=0.388 Sum_probs=37.8
Q ss_pred cccccccCCCCceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCC
Q psy9964 498 WNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546 (595)
Q Consensus 498 ~~~~~~~~~~~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~ 546 (595)
|+...+...+...||++|+|+|.-||++|..|++. |.+|+|+|++
T Consensus 2 ~rR~fS~~~~~~~ydavvig~GhnGL~aaayl~r~----g~~V~vlerr 46 (561)
T KOG4254|consen 2 GRRSFSSLSAKPEYDAVVIGGGHNGLTAAAYLARY----GQSVAVLERR 46 (561)
T ss_pred ccccccccCCCcccceEEecCCccchhHHHHHHhc----CcceEEEEEe
Confidence 34333444556789999999999999999999999 9999999987
No 387
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.29 E-value=0.019 Score=59.36 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=30.7
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+|||||++|+++|..|++.. ...+|+|+++.+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~--~~~~I~li~~e~~ 39 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQG--FTGELHLFSDERH 39 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhC--CCCCEEEeCCCCC
Confidence 3458999999999999999999871 1348999998753
No 388
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.0092 Score=57.44 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=28.4
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEec
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIE 544 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e 544 (595)
..|||+||||||+|.++|++-+|. |++.-|+-
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARK----GiRTGl~a 241 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARK----GIRTGLVA 241 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhh----cchhhhhh
Confidence 468999999999999999999998 88876654
No 389
>KOG0685|consensus
Probab=95.24 E-value=0.021 Score=57.71 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=30.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
....|+|||||++|+++|..|-++ ....|+|+|+...
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~---gf~~~~IlEa~dR 56 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLEN---GFIDVLILEASDR 56 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHh---CCceEEEEEeccc
Confidence 345899999999999999998855 2589999998763
No 390
>PRK07846 mycothione reductase; Reviewed
Probab=95.16 E-value=0.021 Score=60.02 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=27.1
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+||++|+||||+|.++|.. +. |.+|+|+|+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~----G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA----DKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC----CCeEEEEeCCC
Confidence 3899999999999987754 45 99999999865
No 391
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.16 E-value=0.022 Score=60.27 Aligned_cols=32 Identities=34% Similarity=0.373 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
||+|||||++|+.+|..+++. |.+|+|+|+.+
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~----g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL----GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC----CCeEEEEEccC
Confidence 799999999999999999998 99999999865
No 392
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.13 E-value=0.053 Score=60.16 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=52.8
Q ss_pred eeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCch
Q psy9964 168 IVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQ 232 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~ 232 (595)
.++...+...|.+.+.+ |++++++++|++++. .++.+.|++.+|+.+++|.||.|+|.+|.
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~---~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLER---EDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEE---eCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 35667899999999988 999999999999985 35678888888888899999999999985
No 393
>PLN02676 polyamine oxidase
Probab=95.07 E-value=1.8 Score=46.00 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=38.0
Q ss_pred ceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCch
Q psy9964 187 IDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQ 232 (595)
Q Consensus 187 v~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~ 232 (595)
.+|+++++|++|++ ++++|+|++.+|++++||.||.|...+..
T Consensus 245 ~~I~l~~~V~~I~~---~~~gV~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 245 PRLKLNKVVREISY---SKNGVTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred CceecCCEeeEEEE---cCCcEEEEECCCCEEEeCEEEEccChHHh
Confidence 57999999999996 56789999999999999999999976543
No 394
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.06 E-value=0.028 Score=57.01 Aligned_cols=65 Identities=23% Similarity=0.442 Sum_probs=47.4
Q ss_pred eecEEEECCChHHHHHHHHHhcCCC---------CCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPT---------LKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAW 580 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~---------~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~ 580 (595)
.-.++|||||+.|.-+|..|+...- ...++|.|+|++|...+. ++. .++....+.|+++|+.
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~------~~~---~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM------FPP---KLSKYAERALEKLGVE 225 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC------CCH---HHHHHHHHHHHHCCCE
Confidence 4589999999999999988753200 013699999999865432 222 5788999999999986
Q ss_pred ccc
Q psy9964 581 DHI 583 (595)
Q Consensus 581 ~~~ 583 (595)
=.+
T Consensus 226 v~l 228 (405)
T COG1252 226 VLL 228 (405)
T ss_pred EEc
Confidence 444
No 395
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=95.00 E-value=1.3 Score=46.94 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCC
Q psy9964 174 IIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGAR 230 (595)
Q Consensus 174 L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~ 230 (595)
|-+.|.+.+. +.+|+++++|++|+. .+++++|++.+|+++++|.||-|--..
T Consensus 227 l~~~l~~~l~--~~~i~~~~~V~~I~~---~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 227 LPEEIEKRLK--LTKVYKGTKVTKLSH---RGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred HHHHHHHHhc--cCeEEcCCeEEEEEe---cCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 3344444442 368999999999986 556788999999899999999887654
No 396
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=94.99 E-value=0.022 Score=57.93 Aligned_cols=33 Identities=33% Similarity=0.612 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
||+|||+|++||++|+.|++. .+|+|+-+.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-----~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-----FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-----CcEEEEeCCCCC
Confidence 899999999999999999874 799999988754
No 397
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.98 E-value=0.02 Score=54.86 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=32.1
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
...|.|||||++|.-+|+.+++. |++|.|.|=+|..
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~----Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKR----GVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHc----CCcEEEEEccccc
Confidence 44689999999999999999999 9999999977643
No 398
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.97 E-value=0.025 Score=59.50 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=27.1
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+|||+|||+|++|..+| +++. |.+|+|+|+..
T Consensus 2 ~yD~vvIG~G~~g~~aa--~~~~----g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPD--PRFA----DKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHH--HHHC----CCeEEEEeCCC
Confidence 58999999999998875 4445 99999999865
No 399
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=94.94 E-value=0.013 Score=53.76 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=42.0
Q ss_pred eEEEEecCCC-CCCCcEEEEEECCeEEEEeCCCCCCCCC---CCCCCCccccccCC----CCCCCccEEEeCCCChhhcC
Q psy9964 4 IKVTPLGAGQ-DVGRSCILVSMGGKNIMLDCGMHMGYHD---DRKFPDFKFIAPQG----PVTDMIDCLIISHFHLDHCG 75 (595)
Q Consensus 4 ~~i~~lg~~~-~~~~~~~~i~~~~~~~liD~G~~~~~~~---~~~~~~~~~l~~~~----~~~~~i~~i~lTH~H~DH~~ 75 (595)
|+|..++.-+ ++-.-|.+|++.+-.||||+|....... ......++.+.+.. .-.++.+-|.|||.|.||.-
T Consensus 1 MkV~Pla~eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHht 80 (304)
T COG2248 1 MKVIPLASESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHT 80 (304)
T ss_pred CceeeccccccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCC
Confidence 4566664433 2233578899888999999997643211 00001111221111 00256788999999999975
Q ss_pred C
Q psy9964 76 A 76 (595)
Q Consensus 76 g 76 (595)
-
T Consensus 81 P 81 (304)
T COG2248 81 P 81 (304)
T ss_pred c
Confidence 3
No 400
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.92 E-value=0.032 Score=56.64 Aligned_cols=38 Identities=37% Similarity=0.571 Sum_probs=33.0
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..+||++||||+.|.++++.|++. .+.+++.|+|+...
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l--~p~~~I~i~Erl~~ 39 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKEL--EPDWSIAIFERLDS 39 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHh--CCCCeEEEEEecCc
Confidence 468999999999999999999875 24799999998764
No 401
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=94.91 E-value=0.011 Score=54.67 Aligned_cols=45 Identities=24% Similarity=0.216 Sum_probs=34.1
Q ss_pred CCccEEEeCCCChhhcCCcH----HHHHhcCCCccEEEcCccchhhHHHHH
Q psy9964 59 DMIDCLIISHFHLDHCGALP----YFTEMFGYAGPIYMTHPTKAIAPILLE 105 (595)
Q Consensus 59 ~~i~~i~lTH~H~DH~~g~~----~l~~~~~~~~~v~~~~~~~~~~~~~l~ 105 (595)
..|+-.+|||+|.|||.|+. .+.++. ..+||+.+.+++.+++..-
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~qk--kkTI~gl~~tIDvL~khvF 159 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQK--KKTIYGLADTIDVLRKHVF 159 (356)
T ss_pred hhhhheEeccccccchhceeecCccccccC--CceEEechhHHHHHHHHhh
Confidence 46889999999999999983 344421 3579999888888777543
No 402
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.85 E-value=0.073 Score=54.77 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=53.8
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCch
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQ 232 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~ 232 (595)
..++-..+...|.+.+.+ |++++++++|++++. +++.+.|+..+|++++||.||-|.|.+|.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~---~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLER---DGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEE---cCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 456777889999999998 999999999999986 45568888889988999999999999874
No 403
>PLN02976 amine oxidase
Probab=94.84 E-value=0.029 Score=64.86 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=32.6
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+|||||++|+++|+.|++. |++|+|+|+.+.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~----G~~V~VlEa~~~ 727 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ----GFSVTVLEARSR 727 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC----CCcEEEEeeccC
Confidence 357999999999999999999998 999999998753
No 404
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.75 E-value=0.19 Score=52.03 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCc
Q psy9964 171 NDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS 231 (595)
Q Consensus 171 R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 231 (595)
...+.+.|.+.+++.|++++++++|++++. .++.+.|+. +++++.+|.||.|+|.+|
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~---~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKK---DDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEe---cCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 467888899999889999999999999975 345667776 566899999999999988
No 405
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69 E-value=0.038 Score=56.32 Aligned_cols=38 Identities=32% Similarity=0.587 Sum_probs=32.6
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
++|+|||||+.|+.+|..|.+.+...+. +.|+|+.+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCc-eEEecccccc
Confidence 5899999999999999999988765555 9999988743
No 406
>KOG2852|consensus
Probab=94.63 E-value=0.026 Score=53.09 Aligned_cols=67 Identities=28% Similarity=0.444 Sum_probs=43.9
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCC-C-ceEEEecCCCCcccCCCCCCCC-----CC-chhhccHhHHHHHHHc
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLK-D-LSILMIESGPEKSLHFSKSSSY-----SN-RVSSINSSSKQLFETI 577 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~-~-~~v~~~e~~~~~~~~~~~~~~~-----~~-r~~~l~~~~~~~l~~l 577 (595)
-.|+|||||+.|.++|+.|++.+.++ | +.++++|+.............+ ++ -...|.+-|.++.+.|
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~L 85 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEEL 85 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHH
Confidence 58999999999999999999986542 2 8999999876433211111111 11 1234666666666554
No 407
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.62 E-value=3.4 Score=44.11 Aligned_cols=57 Identities=5% Similarity=0.007 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC-----cEEEecEEEEecCCC
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG-----ESIECKLLLGTDGAR 230 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG-----~~~~adlvVgADG~~ 230 (595)
..|-+.|.+.+++.|++|+++++|++|..+ .+....|...+| +++++|.||-+=-.+
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 458888888888889999999999999862 222234444454 578999888776554
No 408
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.61 E-value=0.13 Score=52.86 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=48.9
Q ss_pred ceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCch
Q psy9964 166 SYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQ 232 (595)
Q Consensus 166 ~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~ 232 (595)
|++. -..+...+.+.+.+.|++++++++|++++. .++++.|+.++| ++++|.||.|+|.+|.
T Consensus 144 g~v~-p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 144 GFLR-PELAIKAHLRLAREAGAELLFNEPVTAIEA---DGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred CEEc-HHHHHHHHHHHHHHCCCEEECCCEEEEEEe---eCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 4544 445666666777678999999999999986 345788888877 6999999999999864
No 409
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.61 E-value=0.026 Score=52.98 Aligned_cols=65 Identities=18% Similarity=0.410 Sum_probs=52.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCcc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWD 581 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~~ 581 (595)
.++|+|+|.+|.++|-.|.+. |..|+++|+.+...... ....++.+++..+......|+++|+-+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~----g~~Vv~Id~d~~~~~~~-~~~~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE----GHNVVLIDRDEERVEEF-LADELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC----CCceEEEEcCHHHHHHH-hhhhcceEEEEecCCCHHHHHhcCCCc
Confidence 589999999999999999998 99999999887542210 122357788888899999999999854
No 410
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.58 E-value=0.034 Score=58.59 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+|+|||||++|+++|..|++. ..+.+|+|+|+.+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~--~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRL--NKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHH--CCCCcEEEEECCCc
Confidence 699999999999999999885 12469999998874
No 411
>PRK13984 putative oxidoreductase; Provisional
Probab=94.56 E-value=0.037 Score=60.68 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=32.5
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
...+|+|||+|++|+++|..|++. |++|+|+|+.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~----G~~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM----GYEVTVYESLSK 317 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCC
Confidence 445899999999999999999998 999999998763
No 412
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.51 E-value=0.13 Score=52.89 Aligned_cols=64 Identities=14% Similarity=0.358 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCch--hhhhcCC
Q psy9964 173 LIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQ--VRNAMNV 239 (595)
Q Consensus 173 ~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~--vR~~l~~ 239 (595)
.+...+.+.+++.|+++++++++++++. +++.+.|++.+|+++.+|+||.|.|..+. +.+..++
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~---~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl 249 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEK---TDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGL 249 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEc---cCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCC
Confidence 4556777778779999999999999985 44567888999999999999999998654 4444444
No 413
>PLN02976 amine oxidase
Probab=94.50 E-value=12 Score=44.50 Aligned_cols=58 Identities=10% Similarity=0.007 Sum_probs=39.4
Q ss_pred CCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCC-CChHHHHHHHHHhhh
Q psy9964 377 GPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPI-GHPESLTKYESIRQR 437 (595)
Q Consensus 377 ~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~-~~~~~L~~Y~~~r~~ 437 (595)
.+||+++|+|.+...|-+-+ =|++++...|..|...+..|.+. ...++|+.+++....
T Consensus 1150 ggRLFFAGEATS~~~pGTVH---GAIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~~ 1208 (1713)
T PLN02976 1150 ENCLFFAGEATCKEHPDTVG---GAMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSES 1208 (1713)
T ss_pred CCcEEEEehhhhCCCcchHH---HHHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhhh
Confidence 56899999998877665444 47788888887776766666442 234677777655433
No 414
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.50 E-value=0.046 Score=48.15 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=29.1
Q ss_pred EEECCChHHHHHHHHHhcCC-CCCCceEEEecCCCC
Q psy9964 514 VISGGGMIGTTLACAIAQNP-TLKDLSILMIESGPE 548 (595)
Q Consensus 514 ~ivG~G~~G~~~a~~l~~~~-~~~~~~v~~~e~~~~ 548 (595)
+|||||+.|++++..|.+.. ....++|+|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999998763 234699999999664
No 415
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=94.50 E-value=0.036 Score=53.63 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=46.1
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCC-CCCCCCCchhh-----------ccHhHHHHHHH
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFS-KSSSYSNRVSS-----------INSSSKQLFET 576 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~-~~~~~~~r~~~-----------l~~~~~~~l~~ 576 (595)
...+|+|||+|++||++|+.|++. .+|+|.|+.....-+.. .....|+-.+. --|+-.++|+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-----hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~ 81 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-----HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKT 81 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-----cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHH
Confidence 456899999999999999999985 79999998764322110 00000111111 23778899999
Q ss_pred cCCccc
Q psy9964 577 IGAWDH 582 (595)
Q Consensus 577 lg~~~~ 582 (595)
||+-..
T Consensus 82 iGv~t~ 87 (447)
T COG2907 82 IGVDTK 87 (447)
T ss_pred cCCCCc
Confidence 998654
No 416
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.37 E-value=0.038 Score=56.96 Aligned_cols=35 Identities=34% Similarity=0.537 Sum_probs=31.7
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..|||||||||-+|+.+|++.+|. |.+++|+--..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARm----G~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARM----GAKTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhcc----CCeEEEEEcCC
Confidence 459999999999999999999999 99999988655
No 417
>KOG2415|consensus
Probab=94.33 E-value=3.2 Score=41.65 Aligned_cols=264 Identities=14% Similarity=0.110 Sum_probs=136.0
Q ss_pred cCcEEEEecCCCcceEEcCCccCccccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEE-------
Q psy9964 139 KGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIK------- 211 (595)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~------- 211 (595)
.+++.+....+...++.... ....--|+++=..|-++|-++|++.|++|..+..+.++-.. +++....|-
T Consensus 152 ~d~~~fLt~~~~i~vPv~~p--m~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~-edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 152 SDKFKFLTGKGRISVPVPSP--MDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYD-EDGSVKGIATNDVGIS 228 (621)
T ss_pred ccceeeeccCceeecCCCcc--cccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEc-CCCcEeeEeecccccc
Confidence 35666666655433333211 12233699999999999999999999999999988888774 122222232
Q ss_pred --------EcCCcEEEecEEEEecCCCchhhhhc----CCCC--cccCCCCeEEEEEEEeccCCCC-ceEEEEe----C-
Q psy9964 212 --------FESGESIECKLLLGTDGARSQVRNAM----NVQY--SNWSYDQKGIVATVKISTSPPN-RTAWQRF----T- 271 (595)
Q Consensus 212 --------~~dG~~~~adlvVgADG~~S~vR~~l----~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~- 271 (595)
|+-|-.+.|+.-|-|.|.|..+-+++ ++.. ....|. .++--..++++.... ...-+.+ .
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYg-lGlKEvWei~~~~~~pG~v~HT~GwPl~~ 307 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYG-LGLKEVWEIDPENHNPGEVAHTLGWPLDN 307 (621)
T ss_pred CCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceec-cccceeEecChhhcCCcceeeeccCcccC
Confidence 22333789999999999998887776 2221 111221 122222233321111 1110100 0
Q ss_pred -CCCcEEEeeCCCCCeEEEEecCHhhHHHHhCCCchHHHHHHHHhcCCCcchhhHHHHhhhhhhchhhhccccCCCcccC
Q psy9964 272 -PSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVV 350 (595)
Q Consensus 272 -~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (595)
.-|..+++-+.+....+.+.+..+-.. ..+++-.-.+.++.+ +. ++..++.-. .+
T Consensus 308 ~tYGGsFlYh~~d~~VavGlVVgLdY~N--P~lsP~~EFQk~K~h--------P~-------i~~vleGgk-------~i 363 (621)
T KOG2415|consen 308 DTYGGSFLYHFNDPLVAVGLVVGLDYKN--PYLSPYKEFQKMKHH--------PS-------ISKVLEGGK-------RI 363 (621)
T ss_pred CccCceeEEEcCCCeEEEEEEEEecCCC--CCCCHHHHHHHhhcC--------cc-------hhhhhcCcc-------ee
Confidence 113345566677665555544322100 011221111111110 01 111111000 00
Q ss_pred CCccceeccccceeeeccccccccccCCCEEEEccccccccCccchhhhhchHHHHHHHHHHHHhhhCCCCCCChH-HHH
Q psy9964 351 PPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPE-SLT 429 (595)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~~~~~~~~~~~~-~L~ 429 (595)
....+.+...... ..+..+-.+=+|||=+|..|+=--=-|..+||.++...|+.+-+++....+..... -+.
T Consensus 364 ~YgARaLNEGGfQ-------siPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~ 436 (621)
T KOG2415|consen 364 AYGARALNEGGFQ-------SIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPT 436 (621)
T ss_pred eehhhhhccCCcc-------cCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChh
Confidence 0000001111111 12233445568999999999888888999999999999999988876553310111 155
Q ss_pred HHHHHhhh
Q psy9964 430 KYESIRQR 437 (595)
Q Consensus 430 ~Y~~~r~~ 437 (595)
.|++.-+.
T Consensus 437 ~Ye~nlkd 444 (621)
T KOG2415|consen 437 TYEENLKD 444 (621)
T ss_pred hHHHhhhh
Confidence 88876543
No 418
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.25 E-value=0.058 Score=56.30 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=31.7
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+...+|||||||.+|+.+|..|.+. +.+|+|||+.+.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~----~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPK----KYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcC----CCeEEEEcCCCC
Confidence 3456899999999999999999765 789999998774
No 419
>PRK09897 hypothetical protein; Provisional
Probab=94.25 E-value=0.056 Score=57.54 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=29.7
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.+|+|||||+.|+++|..|.+.. ..++|+|+|+.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~--~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQ--TPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcC--CCCcEEEEecCC
Confidence 37999999999999999998751 257999999865
No 420
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.20 E-value=0.047 Score=56.79 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=45.9
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCch-hhccHhHHHHHHHcCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRV-SSINSSSKQLFETIGA 579 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~-~~l~~~~~~~l~~lg~ 579 (595)
-.|.|||+||+|+++|..|++. |+.|++.|+.+......... -++.|. .-+...-+++|++.|+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~----G~~Vtv~e~~~~~GGll~yG-IP~~kl~k~i~d~~i~~l~~~Gv 188 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA----GHDVTVFERVALDGGLLLYG-IPDFKLPKDILDRRLELLERSGV 188 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC----CCeEEEeCCcCCCceeEEec-CchhhccchHHHHHHHHHHHcCe
Confidence 5899999999999999999999 99999999877422100000 011122 2566788888888884
No 421
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.19 E-value=0.17 Score=51.92 Aligned_cols=74 Identities=14% Similarity=0.235 Sum_probs=59.7
Q ss_pred cceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCC-ceEEEEcCCcE-EEecEEEEecCCCc-hhhhhcCCCC
Q psy9964 165 ISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLN-NVKIKFESGES-IECKLLLGTDGARS-QVRNAMNVQY 241 (595)
Q Consensus 165 ~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~-~v~v~~~dG~~-~~adlvVgADG~~S-~vR~~l~~~~ 241 (595)
.+..+.-..+-..|.+.+.+.|++++++++|++++. .++ ...+.+.+|++ ++|++||-|=|..| .+-+.++.+.
T Consensus 146 ~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~---~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 146 SGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEK---QSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred CCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEE---eCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 345677778899999999999999999999999997 344 56677788876 99999999999776 5666666654
No 422
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.18 E-value=0.11 Score=39.76 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG 215 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG 215 (595)
.++...+.+.+++.|+++++++++++++. ++++++|+++||
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~~~~~~V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEK---DGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEE---ETTSEEEEEETS
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEE---eCCEEEEEEecC
Confidence 44677778888889999999999999996 444588999987
No 423
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.17 E-value=0.05 Score=58.06 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
.|+|||||++|+++|-.|... |+.++++|+.+..
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~----g~~~~~fE~~~~i 36 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE----GLEVTCFEKSDDI 36 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT----T-EEEEEESSSSS
T ss_pred EEEEECccHHHHHHHHHHHHC----CCCCeEEecCCCC
Confidence 599999999999999999888 9999999988753
No 424
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.14 E-value=0.033 Score=58.33 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=28.0
Q ss_pred EECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 515 ISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 515 ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
|||+|.+|+++|+.+++. |.+|+|||+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~----Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA----GASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhC----CCcEEEEeCCCC
Confidence 799999999999999998 999999999773
No 425
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.03 E-value=0.039 Score=55.48 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=27.2
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~ 550 (595)
.+|+|+||.||.++++|++|.... +++++.+|+.+...
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~---~~~~~f~e~~~~f~ 39 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG---DLKALFLERRPSFS 39 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH------EEEEES-SS--
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC---CCCEEEEecCCCCC
Confidence 589999999999999999999872 59999999887543
No 426
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=93.96 E-value=0.067 Score=55.10 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=28.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
..|||||+|-|+.-..+|.+|++. |.+|+.+|+++-
T Consensus 3 ~~yDviI~GTGl~esila~als~~----GkkVLhiD~n~y 38 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRS----GKKVLHIDRNDY 38 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHT----T--EEEE-SSSS
T ss_pred ccceEEEECCCcHHHHHHHHHHhc----CCEEEecCCCCC
Confidence 579999999999999999999999 999999998874
No 427
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=93.78 E-value=0.39 Score=50.88 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=56.8
Q ss_pred eeeeHHHHHHHHHHHHhc----CC--ceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCc-hhhhhcCC
Q psy9964 167 YIVENDLIIDAVTKKLNT----LN--IDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS-QVRNAMNV 239 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~----~g--v~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S-~vR~~l~~ 239 (595)
-.++-..|.+.|.+.+.+ .| ++|+++++|++++. ++++.+.|+..+| +++||.||-|-|.+| .+.+.+|.
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~--~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER--SNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGY 282 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe--cCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCC
Confidence 467888899999999987 66 78999999999986 2355678888777 599999999999998 46666665
No 428
>KOG1335|consensus
Probab=93.75 E-value=0.061 Score=52.78 Aligned_cols=35 Identities=37% Similarity=0.445 Sum_probs=32.8
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
..|||+|+||||.|-.+|+.-+|. |++++.+|++.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl----GlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL----GLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh----cceeEEEeccC
Confidence 589999999999999999999999 99999999865
No 429
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.64 E-value=0.075 Score=55.78 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+|+|||||++|+.+|..|++. ..+.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~--~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL--DKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh--CCCCCEEEEECCCC
Confidence 699999999999999999874 23689999999864
No 430
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=93.41 E-value=5.9 Score=41.74 Aligned_cols=63 Identities=5% Similarity=0.099 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCC-ceEEEEcCCc-----EEEecEEEEecCCCchhhhhc
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLN-NVKIKFESGE-----SIECKLLLGTDGARSQVRNAM 237 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~-~v~v~~~dG~-----~~~adlvVgADG~~S~vR~~l 237 (595)
..|-+.|.+.+++.|++|+++++|++|... +++ .+.|++.+|+ ++.+|-||-|-..+. +++.+
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~--~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL 281 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLN--EDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLL 281 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEEC--CCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhC
Confidence 346678888887789999999999999752 233 3356776665 789999888877654 66665
No 431
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=93.31 E-value=1.2 Score=48.91 Aligned_cols=69 Identities=10% Similarity=0.149 Sum_probs=52.3
Q ss_pred eeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCC-CCce-EEEE---cCCc--EEEecEEEEecCCCch-hhhhcC
Q psy9964 168 IVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQP-LNNV-KIKF---ESGE--SIECKLLLGTDGARSQ-VRNAMN 238 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~-~~~v-~v~~---~dG~--~~~adlvVgADG~~S~-vR~~l~ 238 (595)
.++-..|...|.+.+.+.|++++.+++|+++..+ + ++.+ .|+. .+|+ ++++|.||-|.|.+|. +++.++
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~--~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKD--ESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEe--cCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 3477788899999998899999999999999852 2 2332 3343 2444 6899999999999975 777665
No 432
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=93.28 E-value=0.18 Score=51.93 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=42.6
Q ss_pred eHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCc
Q psy9964 170 ENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS 231 (595)
Q Consensus 170 ~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 231 (595)
+-.++.++|++.+.+.|++|+++++|.+++.. ++....|+++++.++.||-||-|-|-.|
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE----SS
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEEecCCCC
Confidence 34678899999998899999999999999862 3334888887888999999999988766
No 433
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.20 E-value=0.28 Score=51.91 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhh
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVR 234 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR 234 (595)
.++...|.+.+++.|+++++++++++++. .++++.+++.+|+++++|.||-|.|....+.
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEG---GDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEE---eCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 34667788888889999999999999985 3456788888899999999999999876654
No 434
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.20 E-value=0.15 Score=52.87 Aligned_cols=56 Identities=27% Similarity=0.407 Sum_probs=44.4
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCch--hhccHhHHHHHHHcCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRV--SSINSSSKQLFETIGA 579 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~--~~l~~~~~~~l~~lg~ 579 (595)
..+|+|+|||++|+.+|..|++. |++|+++|..+... ++. ..+...-.+.|+..|+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~----G~~v~l~e~~~~~~----------~~~~~~~~~~~~~~~l~~~gi 193 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR----GKKVTLIEAADRLG----------GQLLDPEVAEELAELLEKYGV 193 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEcccccc----------hhhhhHHHHHHHHHHHHHCCc
Confidence 45899999999999999999999 99999999887432 222 3566667777777773
No 435
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.05 E-value=0.18 Score=53.46 Aligned_cols=55 Identities=22% Similarity=0.428 Sum_probs=40.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGA 579 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~ 579 (595)
.|+|||||++|+.+|..|++. |.+|+|+|+.+.... .++. .++....+.|++.|+
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~----g~~Vtli~~~~~il~------~~~~---~~~~~l~~~l~~~gI 236 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADF----GVEVTVVEAADRILP------TEDA---ELSKEVARLLKKLGV 236 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHc----CCeEEEEEecCccCC------cCCH---HHHHHHHHHHHhcCC
Confidence 899999999999999999998 999999998764221 1111 234445566777775
No 436
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=92.80 E-value=0.37 Score=49.80 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchh
Q psy9964 173 LIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQV 233 (595)
Q Consensus 173 ~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~v 233 (595)
.+.+.+.+.+++.|+++++++++++++. ++.+.+++.+|+++.+|+||.|-|.....
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~----~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD----GEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc----CCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 4566777778789999999999999973 45677889999999999999999986553
No 437
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.69 E-value=0.37 Score=51.79 Aligned_cols=60 Identities=17% Similarity=0.348 Sum_probs=52.3
Q ss_pred eeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCc
Q psy9964 169 VENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS 231 (595)
Q Consensus 169 i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 231 (595)
....+|.+.|.+.+.+.|++++++++|++++. .++...|++.+|+++++|.||.|+|.++
T Consensus 263 ~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~---~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 263 TEGPKLAAALEEHVKEYDVDIMNLQRASKLEP---AAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe---cCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 45667889999999888999999999999986 3467788888999999999999999976
No 438
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=92.66 E-value=0.42 Score=48.42 Aligned_cols=63 Identities=22% Similarity=0.249 Sum_probs=51.8
Q ss_pred ceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCc
Q psy9964 166 SYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS 231 (595)
Q Consensus 166 ~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 231 (595)
.+.++|..+.+.+.+.+++ ++++|. ..+|+++.. +.+..+.|.+.+|+++.+|.||-|+|...
T Consensus 89 r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~--e~~~v~GV~~~~g~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 89 RAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV--ENGKVKGVVTKDGEEIEADAVVLATGTFL 152 (392)
T ss_dssp EEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE--CTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred HhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe--cCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence 3589999999999999998 899986 568999986 35566788999999999999999999943
No 439
>KOG1800|consensus
Probab=92.57 E-value=0.17 Score=49.70 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=30.8
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.+.|.|||+||+|+-+|..|-+++ .+.+|.|+|+.|.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~--~~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRH--PNAHVDIFEKLPV 56 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcC--CCCeeEeeecCCc
Confidence 448999999999999998776641 2799999999884
No 440
>KOG2820|consensus
Probab=92.57 E-value=1 Score=43.79 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=62.3
Q ss_pred cccceeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCC--chhhhhcCCC
Q psy9964 163 DRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGAR--SQVRNAMNVQ 240 (595)
Q Consensus 163 ~~~~~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~--S~vR~~l~~~ 240 (595)
+..|=.+.-..-.++|.+.+++.|+.++.|.+|+.+...++.+..|.|...+|+.+.|+=+|-+-|++ +-++..+++.
T Consensus 144 n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~ 223 (399)
T KOG2820|consen 144 NESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIG 223 (399)
T ss_pred cccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccC
Confidence 34444566667788999999999999999999999987666678899999999999999999999974 5555444443
No 441
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=92.49 E-value=0.44 Score=48.31 Aligned_cols=57 Identities=19% Similarity=0.375 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCc
Q psy9964 173 LIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS 231 (595)
Q Consensus 173 ~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 231 (595)
....-+++.+++.|++++|+++|.+++. +++....|+.++|.++.+|.||-|=|..|
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~--~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEI--EDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEe--cCCceEEEEccCCcEEecCEEEEccCcch
Confidence 4567788888889999999999999997 34445678889999999999999999764
No 442
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.49 E-value=0.26 Score=50.55 Aligned_cols=56 Identities=21% Similarity=0.445 Sum_probs=40.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGA 579 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~ 579 (595)
+|+|+|||++|+.+|..|++. |.+|+++++.+.... ...+ ..+...-.+.|++.|+
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~----g~~Vtlv~~~~~~l~-----~~~~---~~~~~~l~~~l~~~gV 198 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRA----GKAVTLVDNAASLLA-----SLMP---PEVSSRLQHRLTEMGV 198 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCcccc-----hhCC---HHHHHHHHHHHHhCCC
Confidence 699999999999999999988 999999998763221 0001 1233445566777775
No 443
>PLN02487 zeta-carotene desaturase
Probab=92.49 E-value=8.8 Score=41.55 Aligned_cols=63 Identities=6% Similarity=0.072 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCceEEeCCeEeEEecCCCCCC---ceEEEE---cCCcEEEecEEEEecCCCchhhhhc
Q psy9964 174 IIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLN---NVKIKF---ESGESIECKLLLGTDGARSQVRNAM 237 (595)
Q Consensus 174 L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~---~v~v~~---~dG~~~~adlvVgADG~~S~vR~~l 237 (595)
|.+.+.+.+++.|++|+++++|.+++.+.+.++ ...|++ .+++++.+|.||-|=+.. .+.+.+
T Consensus 297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~-~~~~Ll 365 (569)
T PLN02487 297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP-GIKRLL 365 (569)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH-HHHHhC
Confidence 667777888889999999999999987311121 234555 234478999999999887 556665
No 444
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.45 E-value=0.17 Score=51.60 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.|+|||||++|+.+|..|.++. .++.+|+|+|+.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-~~~~~I~li~~~~ 35 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-LPGVRVTLINPSS 35 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-CCCCEEEEECCCC
No 445
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=92.36 E-value=9.9 Score=40.32 Aligned_cols=63 Identities=5% Similarity=0.091 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCceEEeCCeEeEEecCCCCCC---ceEEEEcCC---cEEEecEEEEecCCCchhhhhc
Q psy9964 174 IIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLN---NVKIKFESG---ESIECKLLLGTDGARSQVRNAM 237 (595)
Q Consensus 174 L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~---~v~v~~~dG---~~~~adlvVgADG~~S~vR~~l 237 (595)
+.+.|.+.+++.|++|+++++|++|+.++..++ .+.|++.+| +++.+|.||-|=..+ .+++.+
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~-~~~~Ll 289 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP-GIKRLL 289 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH-HHHhhC
Confidence 556677888778999999999999986310011 233445544 468999999998877 445555
No 446
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.34 E-value=0.26 Score=51.84 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=40.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGA 579 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~ 579 (595)
.|+|||||.+|+-+|..|++. |.+|+++++.+.... .+++ .+.....+.|++.|+
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~il~------~~d~---~~~~~~~~~l~~~gI 222 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL----GSETHLVIRHERVLR------SFDS---MISETITEEYEKEGI 222 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCCc------ccCH---HHHHHHHHHHHHcCC
Confidence 799999999999999999998 999999998763221 1111 244455666777675
No 447
>KOG1137|consensus
Probab=92.29 E-value=1.4 Score=45.51 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=64.0
Q ss_pred eEEEEecCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCC-CCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHH
Q psy9964 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDR-KFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTE 82 (595)
Q Consensus 4 ~~i~~lg~~~~~~~~~~~i~~~~~~~liD~G~~~~~~~~~-~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~ 82 (595)
+++..++.| .+.++|.++..=.+..|+++|.--+..+.- ................++-++.++|.|.||.+-+.++..
T Consensus 151 Ikf~p~~aG-hVlgacMf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh 229 (668)
T KOG1137|consen 151 IKFWPYHAG-HVLGACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIH 229 (668)
T ss_pred eEEEeeccc-hhhhheeeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHH
Confidence 677777744 355566544434567899999542211110 000011111111112577889999999999999999987
Q ss_pred hcCCC-----ccEEEcCccchhhHHHHHhhhcc
Q psy9964 83 MFGYA-----GPIYMTHPTKAIAPILLEDFRKI 110 (595)
Q Consensus 83 ~~~~~-----~~v~~~~~~~~~~~~~l~~~~~~ 110 (595)
..-.+ .||++.....+.+....+.+..+
T Consensus 230 ~~v~rGGR~L~PvFAlgrAqELllildeyw~~h 262 (668)
T KOG1137|consen 230 STVPRGGRVLIPVFALGRAQELLLILDEYWGNH 262 (668)
T ss_pred hhccCCCceEeeeeecchHHHHHHHHHHHhhcc
Confidence 65334 67888888877776665555543
No 448
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.26 E-value=0.29 Score=51.70 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=40.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGA 579 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~ 579 (595)
+|+|||||++|+.+|..|++. |.+|+++++.+.... .++ ..+.....+.|++.|+
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~ll~------~~d---~e~~~~l~~~L~~~GI 226 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRL----GTKVTIVEMAPQLLP------GED---EDIAHILREKLENDGV 226 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCcCc------ccc---HHHHHHHHHHHHHCCC
Confidence 799999999999999999988 999999998763221 111 1234445566777665
No 449
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.24 E-value=0.16 Score=45.86 Aligned_cols=33 Identities=24% Similarity=0.542 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.|.|+|+|..|...|..+++. |++|.++|..+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~----G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA----GYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT----TSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC----CCcEEEEECChH
Confidence 388999999999999999999 999999998764
No 450
>KOG4716|consensus
Probab=92.21 E-value=0.13 Score=49.63 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=32.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
...||.||+|||-.||++|-..++. |.+|+++|--.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~----G~kV~~lDfV~ 52 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL----GAKVACLDFVK 52 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc----CCcEEEEeecc
Confidence 4578999999999999999999998 99999999644
No 451
>PRK06116 glutathione reductase; Validated
Probab=92.14 E-value=0.48 Score=49.97 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCch
Q psy9964 173 LIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQ 232 (595)
Q Consensus 173 ~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~ 232 (595)
++.+.|.+.+++.|++++++++|.+++.. +++.+.|++.+|+++.+|.||-|-|....
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~--~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKN--ADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEc--CCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 46677778888899999999999999852 22337888889999999999999997644
No 452
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.11 E-value=0.31 Score=51.17 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.|+|||||++|+.+|..|++. |.+|+++|+.+.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~----g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL----GSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCc
Confidence 699999999999999999987 999999998763
No 453
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=92.11 E-value=0.52 Score=49.82 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=50.5
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCch
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQ 232 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~ 232 (595)
..++-..+.+.|.+.+.+.|++|+.+++|++++. ++.+.|+..+| +++||.||-|-|.+|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~----~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE----GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee----CCceEEEeCCc-EEECCEEEEccccccc
Confidence 4567778889999999889999999999999973 34567777777 5999999999998864
No 454
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.05 E-value=0.32 Score=51.44 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=40.4
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGA 579 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~ 579 (595)
-.|+|||||++|+.+|..|++. |.+|+++|+.+.... .+++ .+.....+.|++.|+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~----G~~Vtlie~~~~il~------~~d~---~~~~~l~~~l~~~gV 230 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRL----GAQVTVVEYLDRICP------GTDT---ETAKTLQKALTKQGM 230 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCeEEEEeCCCCCCC------CCCH---HHHHHHHHHHHhcCC
Confidence 3799999999999999999998 999999998763221 1111 233445566676665
No 455
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=91.98 E-value=0.59 Score=49.44 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=55.6
Q ss_pred ccceeeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEE---cCCc--EEEecEEEEecCCCc-hhhhh
Q psy9964 164 RISYIVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKF---ESGE--SIECKLLLGTDGARS-QVRNA 236 (595)
Q Consensus 164 ~~~~~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~---~dG~--~~~adlvVgADG~~S-~vR~~ 236 (595)
+.+..++...|.+.|.+.+.+ .|++++++++|++++. +.++.++|++ .+|+ +++||+||-|=|.+| .+.+.
T Consensus 176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~ 253 (497)
T PRK13339 176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER--LSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQK 253 (497)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--CCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHH
Confidence 345678888999999999865 6899999999999986 2255666663 3453 689999865555554 67788
Q ss_pred cCCC
Q psy9964 237 MNVQ 240 (595)
Q Consensus 237 l~~~ 240 (595)
+|..
T Consensus 254 ~Gi~ 257 (497)
T PRK13339 254 SGIP 257 (497)
T ss_pred cCCC
Confidence 7765
No 456
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.93 E-value=0.27 Score=51.59 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=41.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCCc
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAW 580 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~~ 580 (595)
.|+|+|||.+|+-+|..|++. |.+|+|+++.+.... .++. .++....+.|++.|+.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~~------~~d~---~~~~~l~~~l~~~gI~ 205 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER----GLHPTLIHRSDKINK------LMDA---DMNQPILDELDKREIP 205 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC----CCcEEEEecccccch------hcCH---HHHHHHHHHHHhcCCE
Confidence 699999999999999999998 999999998763221 1111 2445566677777763
No 457
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=91.53 E-value=0.56 Score=50.42 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=50.0
Q ss_pred eeeHHHHHHHHHHHHhc-CCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchh
Q psy9964 168 IVENDLIIDAVTKKLNT-LNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQV 233 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~-~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~v 233 (595)
.++|..+...|.+.+.+ .|+++. ...|+++.. +++..+.|...+|.++.|+.||.|+|.++.=
T Consensus 96 QiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~--e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g 159 (618)
T PRK05192 96 QADRKLYRAAMREILENQPNLDLF-QGEVEDLIV--ENGRVVGVVTQDGLEFRAKAVVLTTGTFLRG 159 (618)
T ss_pred hcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe--cCCEEEEEEECCCCEEECCEEEEeeCcchhc
Confidence 57888899999998876 688874 667888875 2333345888899999999999999987643
No 458
>KOG4736|consensus
Probab=91.45 E-value=0.16 Score=47.95 Aligned_cols=52 Identities=31% Similarity=0.527 Sum_probs=42.0
Q ss_pred cEEEEEECCeEEEEeCCCCCCCCCCCCCCCccccccCCCCCCCccEEEeCCCChhhcCCcHHHHH
Q psy9964 18 SCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTE 82 (595)
Q Consensus 18 ~~~~i~~~~~~~liD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~ 82 (595)
+..++.++...+++|+|.+ .+.+.++.+++|+.+++||.|.+|++++..+..
T Consensus 96 ~~tl~~d~~~v~v~~~gls-------------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~ 147 (302)
T KOG4736|consen 96 QITLVVDGGDVVVVDTGLS-------------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQ 147 (302)
T ss_pred ccceeecCCceEEEecCCc-------------hhhhcCcChhhcceeEEeccCcccccccccccC
Confidence 4556666778899999964 455667777899999999999999999887765
No 459
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.36 E-value=0.69 Score=45.57 Aligned_cols=59 Identities=17% Similarity=0.354 Sum_probs=49.3
Q ss_pred eeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCc
Q psy9964 169 VENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS 231 (595)
Q Consensus 169 i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 231 (595)
+...++...|.+.+.+.|+++++ .+|++++. .++.+.|+..+|+++++|.||-|.|...
T Consensus 54 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~---~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKFGAEIIY-EEVIKVDL---SDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred CChHHHHHHHHHHHHHcCCeEEE-EEEEEEEe---cCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 45567788888888888999999 89999985 4556788888888999999999999864
No 460
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=91.05 E-value=0.44 Score=50.48 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=31.0
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
-+|+|||||.+|+.+|..|++. |.+|+++++.+.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~----g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL----GSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCc
Confidence 3799999999999999999998 999999998763
No 461
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=91.01 E-value=0.7 Score=49.51 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhhhhcC
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMN 238 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~ 238 (595)
..|.+.|.+.+++.|++|+++++|++|..+ ++..+.|++++|+++++|.||.|=+.+..+...+.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~ 283 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLDADAVVSNADLHHTYRRLLP 283 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcC
Confidence 578889999998899999999999999862 33346888899999999999988887777776653
No 462
>PRK06370 mercuric reductase; Validated
Probab=90.91 E-value=0.47 Score=50.21 Aligned_cols=33 Identities=36% Similarity=0.610 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+|+|||||.+|+.+|..|++. |.+|+++++.+.
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~----G~~Vtli~~~~~ 205 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRF----GSEVTVIERGPR 205 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCC
Confidence 799999999999999999998 999999998764
No 463
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=90.85 E-value=0.48 Score=49.60 Aligned_cols=33 Identities=33% Similarity=0.581 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.|+|+|||++|+.+|..|++. |.+|+++++.+.
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~ 171 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRER----GKNVTLIHRSER 171 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhC----CCcEEEEECCcc
Confidence 799999999999999999998 999999998763
No 464
>KOG2311|consensus
Probab=90.75 E-value=0.23 Score=50.34 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=32.1
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
...|||||||||=+|..+|.+-++. |-+.+++...-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~----Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL----GARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc----CCceEEeeccc
Confidence 5689999999999999999999998 99999888653
No 465
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.72 E-value=0.34 Score=49.26 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=33.1
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcc
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~ 550 (595)
...|||+|||-.|+.+|..|++++ . +.+|++||+.+...
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~-~~~itLVd~~~~hl 41 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P-DVEITLVDRRDYHL 41 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C-CCcEEEEeCCCccc
Confidence 457999999999999999999984 2 68999999987543
No 466
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.64 E-value=0.37 Score=42.07 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=28.9
Q ss_pred EEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 513 v~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
|+|+|+|-+|+..|..|++. |.+|.++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~----g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA----GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT----TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC----CCceEEEEccc
Confidence 68999999999999999998 99999999876
No 467
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.59 E-value=0.5 Score=50.07 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
+|+|||||++|+.+|..|++. |.+|+|+|+.+.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL----GSEVDVVEMFDQ 208 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc----CCCEEEEecCCC
Confidence 799999999999999999998 999999998764
No 468
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.56 E-value=0.35 Score=48.12 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=31.5
Q ss_pred CceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 508 ~~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+....|.|+|+|.+|.++|..|+++ |.+|+++.+.+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~----g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA----GFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC----CCeEEEEEeCC
Confidence 3345799999999999999999998 99999998765
No 469
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.54 E-value=1 Score=46.27 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=49.9
Q ss_pred eeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceE-EEEcCC--cEEEecEEEEecCCC-ch
Q psy9964 168 IVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVK-IKFESG--ESIECKLLLGTDGAR-SQ 232 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~-v~~~dG--~~~~adlvVgADG~~-S~ 232 (595)
++.=..|.+.|.+.+++.|+++..+++|++++. .++.++ |...++ .++++|-+|-|.|++ |.
T Consensus 259 Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~---~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 259 SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF---EGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe---eCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 455667889999999999999999999999986 344455 444665 389999999999999 76
No 470
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.36 E-value=0.42 Score=46.95 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=34.0
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCc
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~ 549 (595)
..|||+|+|-|++-+.++.+|+.. |.+|+.+|+++-.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~----~k~VlhiD~Nd~Y 41 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWD----GKNVLHIDKNDYY 41 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhc----CceEEEEeCCCcc
Confidence 379999999999999999999998 9999999998754
No 471
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.32 E-value=0.92 Score=48.68 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=51.1
Q ss_pred eeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCc
Q psy9964 169 VENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS 231 (595)
Q Consensus 169 i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 231 (595)
....++.+.|.+.+++.|++++.+++|++++. .++.+.|++.+|+++++|.||.|.|.+.
T Consensus 264 ~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~---~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 264 TTGSQLAANLEEHIKQYPIDLMENQRAKKIET---EDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEe---cCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 35677888888888888999999999999985 3456788888999999999999999874
No 472
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=90.30 E-value=0.91 Score=48.06 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchhh
Q psy9964 173 LIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVR 234 (595)
Q Consensus 173 ~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR 234 (595)
++...+.+.+++.|+++++++++++++. .++++.+.+.+|+++.+|.||-|-|....+.
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~---~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVER---TGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEE---eCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 4566777888779999999999999974 3456888888999999999999999876653
No 473
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=90.26 E-value=0.35 Score=41.24 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=27.1
Q ss_pred EEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 513 v~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
++|+|+|.++.++|-.++.. |++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~l----g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL----GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC----TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC----CCEEEEEcCCcc
Confidence 58999999999999888887 999999998864
No 474
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.25 E-value=0.48 Score=53.73 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGA 579 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~ 579 (595)
.++|||||++|+-+|..|++. |.+|+|+|..+.... ..---..+....+.|++.|+
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~----G~~VtvVe~~~~ll~--------~~ld~~~~~~l~~~L~~~GV 202 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNL----GVETHVIEFAPMLMA--------EQLDQMGGEQLRRKIESMGV 202 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHc----CCeEEEEeccccchh--------hhcCHHHHHHHHHHHHHCCC
No 475
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=90.23 E-value=0.085 Score=55.11 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=0.0
Q ss_pred eeeeHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEc--CCc-EEEecEEEEecCCCchhhhhcCCC
Q psy9964 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFE--SGE-SIECKLLLGTDGARSQVRNAMNVQ 240 (595)
Q Consensus 167 ~~i~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~--dG~-~~~adlvVgADG~~S~vR~~l~~~ 240 (595)
+.+++..+..+|.+.+.+.|++|++++.|+++..+ ++.-..|++. +|. +++|+++|.|+|- ..+-...|.+
T Consensus 85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g~l~~~aG~~ 158 (428)
T PF12831_consen 85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSGRKEIRAKVFIDATGD-GDLAALAGAP 158 (428)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc-cccccccccc
Confidence 45677778888888887799999999999999973 3233344444 354 8999999999995 4555555543
No 476
>KOG2404|consensus
Probab=90.17 E-value=0.32 Score=46.74 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.|||||||++|++++..+-.. |-.|+++|+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~----gg~V~llek~~ 42 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK----GGIVILLEKAG 42 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc----CCeEEEEeccC
Confidence 799999999999999988776 66699999765
No 477
>PLN02507 glutathione reductase
Probab=89.97 E-value=1 Score=48.08 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchh
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQV 233 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~v 233 (595)
.++.+.+.+.+++.|++++.+++|++++. .++++.+.+.+|+++.+|.||-|-|....+
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~---~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTK---TEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE---eCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 34566777778779999999999999984 345678888889999999999999987665
No 478
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.94 E-value=0.66 Score=49.34 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=50.3
Q ss_pred ceeeeH---HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCC
Q psy9964 166 SYIVEN---DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGA 229 (595)
Q Consensus 166 ~~~i~R---~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~ 229 (595)
|+.+.+ ..|-+.|.+.+++.|++|+++++|++|.. +++.+++++..+|+.+++|.||.+=..
T Consensus 215 G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v--~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 215 GVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV--EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred CeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE--eCCcceEEeccccceeccceeEecCch
Confidence 455555 67889999999999999999999999987 344578899888878899988876544
No 479
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.92 E-value=0.29 Score=44.40 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=26.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~ 548 (595)
.|.|+|-|-+|+.+|+.|++. |++|+-+|..+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~----G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK----GHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT----TSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhC----CCEEEEEeCChH
Confidence 588999999999999999999 999999997764
No 480
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=89.91 E-value=2.3 Score=43.25 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=52.0
Q ss_pred eHHHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC-cEEEecEEEEecCCCc-----------hhhhhc
Q psy9964 170 ENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG-ESIECKLLLGTDGARS-----------QVRNAM 237 (595)
Q Consensus 170 ~R~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG-~~~~adlvVgADG~~S-----------~vR~~l 237 (595)
+-.+..++|.+.+++.||+|+++++|++++ + ++..+++.++ .+++||-||-|-|-.| .+.+.+
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~----~-~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~l 158 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ----G-GTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQR 158 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEe----C-CcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHC
Confidence 346688899999999999999999999994 2 2466776544 4799999999999776 556666
Q ss_pred CCCCc
Q psy9964 238 NVQYS 242 (595)
Q Consensus 238 ~~~~~ 242 (595)
|....
T Consensus 159 Gh~i~ 163 (376)
T TIGR03862 159 GVSVA 163 (376)
T ss_pred CCccc
Confidence 65443
No 481
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=89.84 E-value=0.56 Score=53.05 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGA 579 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~ 579 (595)
.|+|||||++|+-+|..|++. |.+|+|+|..+.... ..---.+.....+.|++.|+
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~----G~~Vtvv~~~~~ll~--------~~ld~~~~~~l~~~l~~~GV 197 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNL----GMDVSVIHHAPGLMA--------KQLDQTAGRLLQRELEQKGL 197 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhc----CCeEEEEccCCchhh--------hhcCHHHHHHHHHHHHHcCC
No 482
>KOG3923|consensus
Probab=89.74 E-value=0.38 Score=45.84 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=30.4
Q ss_pred ceecEEEECCChHHHHHHHHHhcC---CCCCCceEEEecCCCC
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQN---PTLKDLSILMIESGPE 548 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~---~~~~~~~v~~~e~~~~ 548 (595)
+..+|+|||+|.+|+++|+++.+. ...+-.+|.+++.++.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 456899999999999999777652 2234578999887663
No 483
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.72 E-value=0.39 Score=51.08 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.|+|+|+|.+|+++|..|++. |.+|+++|..+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~----G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL----GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence 699999999999999999998 99999999765
No 484
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.68 E-value=0.51 Score=41.51 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.|.|+|||-.|.++|..|+++ |.+|.+..+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~----g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN----GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC----TEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHc----CCEEEEEeccH
Confidence 378999999999999999999 99999999875
No 485
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=89.60 E-value=0.63 Score=47.24 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCce-EEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLS-ILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~-v~~~e~~~ 547 (595)
.|+|+|+|++|+-+|..|.+. |.+ |+|+++.+
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~----g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL----GAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc----CCCeEEEEeecc
Confidence 799999999999999999887 876 99999765
No 486
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=89.60 E-value=1.1 Score=47.50 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC--cEEEecEEEEecCCCchhh
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG--ESIECKLLLGTDGARSQVR 234 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG--~~~~adlvVgADG~~S~vR 234 (595)
.++.+.+.+.+++.|++++++++|++++. +++.+.+.+.+| +++.+|.||-|-|..+.+.
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~---~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEK---NDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEE---eCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 45667788888889999999999999985 445677877777 4799999999999877543
No 487
>PTZ00058 glutathione reductase; Provisional
Probab=89.41 E-value=0.69 Score=49.90 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=40.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCCCcccCCCCCCCCCCchhhccHhHHHHHHHcCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGA 579 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lg~ 579 (595)
.|+|+|||.+|+-+|..|++. |.+|+++++.+.... .++. .+.....+.|++.|+
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~----G~~Vtli~~~~~il~------~~d~---~i~~~l~~~L~~~GV 293 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRL----GAESYIFARGNRLLR------KFDE---TIINELENDMKKNNI 293 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHc----CCcEEEEEecccccc------cCCH---HHHHHHHHHHHHCCC
Confidence 799999999999999999998 999999998763211 1111 233445566777665
No 488
>PLN02576 protoporphyrinogen oxidase
Probab=89.35 E-value=18 Score=38.66 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=27.6
Q ss_pred CCEEEEccccccccCccchhhhhchHHHHHHHHHHHHh
Q psy9964 378 PGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAES 415 (595)
Q Consensus 378 grvvLvGDAAH~~~P~~GqG~n~Al~Da~~La~~L~~~ 415 (595)
+++.++||... |-|++-||++|..+|+.+...
T Consensus 455 ~~l~~aG~~~~------g~~i~~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 455 PGLFLGGNYRG------GVALGKCVESGYEAADLVISY 486 (496)
T ss_pred CCEEEeccccC------CccHHHHHHHHHHHHHHHHHH
Confidence 68999999975 559999999999999998654
No 489
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.29 E-value=1.1 Score=47.44 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCC---cEEEecEEEEecCCCchh
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG---ESIECKLLLGTDGARSQV 233 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG---~~~~adlvVgADG~~S~v 233 (595)
.++...+.+.+++.|++++++++|++++. +++.+.+.+.+| +++.+|.||-|-|....+
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQ---TDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEE---eCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 45667778888889999999999999985 345778887776 689999999999986554
No 490
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.15 E-value=0.42 Score=47.43 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
+|.|+|+|..|..+|..|+++ |.+|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~----G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA----GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC----CCeeEEEeCCH
Confidence 599999999999999999998 99999999876
No 491
>KOG2844|consensus
Probab=89.04 E-value=0.4 Score=50.78 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=27.5
Q ss_pred ceecEEEECCChHHHHHHHHHhcCCCCCCceEEEec
Q psy9964 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIE 544 (595)
Q Consensus 509 ~~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e 544 (595)
...||+|||||.+|..+|++||+. |.+..+++
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~----g~k~avll 69 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKR----GMKGAVLL 69 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHc----cccceEEE
Confidence 457999999999999999999998 88855444
No 492
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=88.66 E-value=1.4 Score=46.05 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCC
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGAR 230 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~ 230 (595)
..|-+.|.+.++..|.+++++++|.+|..+ +++..+.|++++|++++|+.||+.....
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~-~~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFD-ENGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEc-CCCeEEEEEECCCcEEECCEEEECcccc
Confidence 357888888888889999999999999862 1223478999999999999999865554
No 493
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=88.63 E-value=1.5 Score=46.21 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCch
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQ 232 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~ 232 (595)
.++...+.+.+++.|++++.++++++++. .++++.|.+.+|+++.+|.||-|-|....
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~---~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITK---TDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEE---cCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 34566777778779999999999999985 34567888888999999999999997544
No 494
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.63 E-value=0.71 Score=40.57 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=28.1
Q ss_pred eecEEEECCChHHHHHHHHHhcCCCCCCceEEEecC
Q psy9964 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIES 545 (595)
Q Consensus 510 ~~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~ 545 (595)
.-.|+|||||.+|...|-.|... |.+|+|+.+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~----ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT----GAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcC
Confidence 34799999999999999988887 999999964
No 495
>PLN02568 polyamine oxidase
Probab=88.32 E-value=1.2 Score=47.91 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecC
Q psy9964 173 LIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDG 228 (595)
Q Consensus 173 ~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG 228 (595)
.|.+.|.+.+. +.+|+++++|+.|+. .+++|+|++.||++++||.||.+==
T Consensus 243 ~Li~~La~~L~--~~~I~ln~~V~~I~~---~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 243 SVIEALASVLP--PGTIQLGRKVTRIEW---QDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHHhhCC--CCEEEeCCeEEEEEE---eCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 36666666663 346999999999996 5678999999999999999999854
No 496
>PRK09897 hypothetical protein; Provisional
Probab=88.26 E-value=1.4 Score=47.06 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=39.1
Q ss_pred HHHHHHhcCC--ceEEeCCeEeEEecCCCCCCceEEEEcCC-cEEEecEEEEecCC
Q psy9964 177 AVTKKLNTLN--IDIVYQKKVAHYELPEQPLNNVKIKFESG-ESIECKLLLGTDGA 229 (595)
Q Consensus 177 ~L~~~~~~~g--v~i~~~~~v~~v~~~~~~~~~v~v~~~dG-~~~~adlvVgADG~ 229 (595)
.|.+.+.+.| ++++.+++|++++. .++++.|++.+| .++.+|.||.|+|-
T Consensus 112 ~l~~~a~~~G~~V~v~~~~~V~~I~~---~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 112 RLVDQARQQKFAVAVYESCQVTDLQI---TNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHcCCeEEEEECCEEEEEEE---eCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 3445555555 78889999999986 456788888664 68999999999995
No 497
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.24 E-value=0.57 Score=45.97 Aligned_cols=32 Identities=19% Similarity=0.495 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 512 dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
.|.|+|+|..|..+|..|+++ |.+|.++|..+
T Consensus 5 kIaViGaG~mG~~iA~~la~~----G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH----GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc----CCeEEEEeCCH
Confidence 699999999999999999998 99999999765
No 498
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=88.20 E-value=1.6 Score=45.61 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCceEEeCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCCCchh
Q psy9964 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQV 233 (595)
Q Consensus 172 ~~L~~~L~~~~~~~gv~i~~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~v 233 (595)
..+...+.+.+++.|+++++++++.+++. ++.+ +.+.+|+++.+|.||-|-|.....
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~~~~-v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEG----EERV-KVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEec----CCCE-EEEcCCCEEEeCEEEECCCccCCH
Confidence 34566777778789999999999999984 2333 667889999999999999986443
No 499
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.14 E-value=0.76 Score=42.40 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.6
Q ss_pred ecEEEECCChHHHHHHHHHhcCCCCCCceEEEecCCC
Q psy9964 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547 (595)
Q Consensus 511 ~dv~ivG~G~~G~~~a~~l~~~~~~~~~~v~~~e~~~ 547 (595)
-.|+|||||.+|..-+..|... |-+|+|+++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~----ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA----GAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC----CCEEEEEcCCC
Confidence 3799999999999999999988 99999998754
No 500
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=88.13 E-value=2.4 Score=37.22 Aligned_cols=59 Identities=12% Similarity=0.199 Sum_probs=42.2
Q ss_pred eeeHHHHHHHHHHHHhc------CCceEE-eCCeEeEEecCCCCCCceEEEEcCCcEEEecEEEEecCC
Q psy9964 168 IVENDLIIDAVTKKLNT------LNIDIV-YQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGA 229 (595)
Q Consensus 168 ~i~R~~L~~~L~~~~~~------~gv~i~-~~~~v~~v~~~~~~~~~v~v~~~dG~~~~adlvVgADG~ 229 (595)
.++|..+-+.|.+.+.+ .+++|. ...+|++++. .+++..|..+||.++++|.||-|-|-
T Consensus 90 f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~---~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 90 FPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRR---DDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEE---cCCcEEEEECCCCEEEeCEEEECCCC
Confidence 45555555554444333 455553 4669999996 56678999999999999999999984
Done!