Your job contains 1 sequence.
>psy9964
MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM
IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF
FTSQMNILKIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTK
KLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQ
YSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKAL
LQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEK
SRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGY
PIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSI
LCDIFMRTSMEKVTLLVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSI
LMIESGPEKSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTRTCTVDNMK
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9964
(595 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-060825-297 - symbol:coq6 "coenzyme Q6 homol... 736 7.5e-73 1
RGD|1311149 - symbol:Coq6 "coenzyme Q6 homolog, monooxyge... 702 3.0e-69 1
UNIPROTKB|F1S3H4 - symbol:COQ6 "Uncharacterized protein" ... 698 8.0e-69 1
MGI|MGI:1924408 - symbol:Coq6 "coenzyme Q6 homolog (yeast... 694 2.1e-68 1
UNIPROTKB|G3XA86 - symbol:COQ6 "Coenzyme Q6 homolog, mono... 694 2.1e-68 1
UNIPROTKB|Q9Y2Z9 - symbol:COQ6 "Ubiquinone biosynthesis m... 693 2.7e-68 1
UNIPROTKB|F1PBF7 - symbol:COQ6 "Uncharacterized protein" ... 693 2.7e-68 1
UNIPROTKB|Q2KIL4 - symbol:COQ6 "Ubiquinone biosynthesis m... 683 3.1e-67 1
WB|WBGene00000766 - symbol:coq-6 species:6239 "Caenorhabd... 677 1.3e-66 1
UNIPROTKB|F1NBR7 - symbol:COQ6 "Uncharacterized protein" ... 675 2.2e-66 1
FB|FBgn0031713 - symbol:CG7277 species:7227 "Drosophila m... 672 4.5e-66 1
FB|FBgn0039691 - symbol:IntS11 "Integrator 11" species:72... 574 1.1e-55 1
UNIPROTKB|F1NV30 - symbol:CPSF3L "Integrator complex subu... 569 3.7e-55 1
UNIPROTKB|Q5ZIH0 - symbol:CPSF3L "Integrator complex subu... 569 3.7e-55 1
MGI|MGI:1919207 - symbol:Cpsf3l "cleavage and polyadenyla... 562 2.1e-54 1
RGD|1306841 - symbol:Cpsf3l "cleavage and polyadenylation... 562 2.1e-54 1
ZFIN|ZDB-GENE-050522-13 - symbol:cpsf3l "cleavage and pol... 562 2.1e-54 1
UNIPROTKB|C9J979 - symbol:CPSF3L "Integrator complex subu... 558 5.5e-54 1
UNIPROTKB|E9PNS4 - symbol:CPSF3L "Integrator complex subu... 558 5.5e-54 1
UNIPROTKB|Q5TA45 - symbol:CPSF3L "Integrator complex subu... 558 5.5e-54 1
UNIPROTKB|E2QY53 - symbol:CPSF3L "Uncharacterized protein... 557 7.0e-54 1
UNIPROTKB|F1RJE8 - symbol:CPSF3L "Uncharacterized protein... 553 1.9e-53 1
UNIPROTKB|E9PIL7 - symbol:CPSF3L "Integrator complex subu... 549 4.9e-53 1
UNIPROTKB|Q2YDM2 - symbol:CPSF3L "Integrator complex subu... 540 4.4e-52 1
UNIPROTKB|E1B7Q9 - symbol:CPSF3L "Integrator complex subu... 533 2.4e-51 1
DICTYBASE|DDB_G0278189 - symbol:ints11 "integrator comple... 511 2.9e-51 2
UNIPROTKB|E9PI75 - symbol:CPSF3L "Integrator complex subu... 523 2.8e-50 1
UNIPROTKB|E9PIG1 - symbol:CPSF3L "Integrator complex subu... 523 2.8e-50 1
UNIPROTKB|G3V1S5 - symbol:CPSF3L "Integrator complex subu... 523 2.8e-50 1
WB|WBGene00008642 - symbol:F10B5.8 species:6239 "Caenorha... 504 2.9e-48 1
DICTYBASE|DDB_G0291440 - symbol:coq6 "monooxygenase" spec... 472 7.1e-45 1
UNIPROTKB|E9PQF0 - symbol:CPSF3L "Integrator complex subu... 446 4.0e-42 1
TAIR|locus:2093731 - symbol:AT3G24200 "AT3G24200" species... 438 2.8e-41 1
SGD|S000003487 - symbol:COQ6 "Putative flavin-dependent m... 429 2.6e-40 1
CGD|CAL0001438 - symbol:orf19.3058 species:5476 "Candida ... 407 5.5e-38 1
POMBASE|SPBC146.12 - symbol:coq6 "monooxygenase Coq6 (pre... 384 2.4e-35 1
TAIR|locus:2065368 - symbol:CPSF73-II "AT2G01730" species... 393 1.6e-34 1
UNIPROTKB|Q9KTD9 - symbol:VC_0963 "VisC-related protein" ... 227 8.5e-32 2
TIGR_CMR|VC_0963 - symbol:VC_0963 "visC protein, putative... 227 8.5e-32 2
UNIPROTKB|P75728 - symbol:ubiF species:83333 "Escherichia... 222 6.3e-31 2
UNIPROTKB|Q83F72 - symbol:visC "Monooxygenase" species:22... 217 6.6e-29 2
TIGR_CMR|CBU_0076 - symbol:CBU_0076 "visC protein" specie... 217 6.6e-29 2
ASPGD|ASPL0000016806 - symbol:AN3586 species:162425 "Emer... 324 1.0e-26 1
TIGR_CMR|SO_0778 - symbol:SO_0778 "oxidoreductase, FAD-bi... 185 6.4e-26 2
UNIPROTKB|P25535 - symbol:visC "predicted oxidoreductase,... 198 2.2e-25 2
TIGR_CMR|SO_0777 - symbol:SO_0777 "2-octaprenyl-6-methoxy... 188 1.7e-24 2
DICTYBASE|DDB_G0274799 - symbol:cpsf3 "cleavage and polya... 281 4.7e-23 2
GENEDB_PFALCIPARUM|PFC0825c - symbol:PFC0825c "cleavage a... 193 1.0e-22 2
UNIPROTKB|O77371 - symbol:PFC0825c "Cleavage and polyaden... 193 1.0e-22 2
TIGR_CMR|CPS_1272 - symbol:CPS_1272 "2-octaprenyl-6-metho... 172 1.3e-22 2
TAIR|locus:2206076 - symbol:CPSF73-I "cleavage and polyad... 287 4.8e-22 1
UNIPROTKB|P25534 - symbol:ubiH species:83333 "Escherichia... 171 5.6e-22 2
UNIPROTKB|P79101 - symbol:CPSF3 "Cleavage and polyadenyla... 279 3.6e-21 1
UNIPROTKB|Q9UKF6 - symbol:CPSF3 "Cleavage and polyadenyla... 279 3.6e-21 1
MGI|MGI:1859328 - symbol:Cpsf3 "cleavage and polyadenylat... 279 3.6e-21 1
UNIPROTKB|F1NKW5 - symbol:CPSF3 "Uncharacterized protein"... 279 3.6e-21 1
RGD|1305767 - symbol:Cpsf3 "cleavage and polyadenylation ... 279 3.6e-21 1
UNIPROTKB|G3V6W7 - symbol:Cpsf3 "Protein Cpsf3" species:1... 279 3.6e-21 1
UNIPROTKB|E2R7R2 - symbol:CPSF3 "Uncharacterized protein"... 279 4.0e-21 1
ZFIN|ZDB-GENE-030131-3275 - symbol:cpsf3 "cleavage and po... 276 7.9e-21 1
UNIPROTKB|I3LKR1 - symbol:CPSF3 "Uncharacterized protein"... 270 3.6e-20 1
WB|WBGene00013460 - symbol:cpsf-3 species:6239 "Caenorhab... 268 6.4e-20 1
FB|FBgn0261065 - symbol:Cpsf73 "Cleavage and polyadenylat... 267 7.7e-20 1
UNIPROTKB|Q0BWC9 - symbol:ubiF "2-octaprenyl-3-methyl-6-m... 160 7.7e-20 2
UNIPROTKB|Q9KP99 - symbol:VC_2474 "VisC protein" species:... 240 1.7e-17 1
TIGR_CMR|VC_2474 - symbol:VC_2474 "visC protein" species:... 240 1.7e-17 1
TIGR_CMR|CPS_1273 - symbol:CPS_1273 "monooxygenase family... 241 1.8e-17 1
TIGR_CMR|SO_1183 - symbol:SO_1183 "oxidoreductase, FAD-bi... 239 2.1e-17 1
UNIPROTKB|Q9KP98 - symbol:VC_2475 "UbiH protein" species:... 161 3.3e-16 2
TIGR_CMR|VC_2475 - symbol:VC_2475 "ubiH protein" species:... 161 3.3e-16 2
TIGR_CMR|ECH_0020 - symbol:ECH_0020 "ubiquinone biosynthe... 142 5.6e-16 2
TIGR_CMR|APH_0009 - symbol:APH_0009 "ubiquinone biosynthe... 147 4.4e-15 2
POMBASE|SPAC17G6.16c - symbol:ysh1 "mRNA cleavage and pol... 226 5.9e-15 2
UNIPROTKB|C9JZH6 - symbol:CPSF3 "Cleavage and polyadenyla... 196 1.2e-14 1
TIGR_CMR|CPS_3568 - symbol:CPS_3568 "2-octaprenyl-3-methy... 203 2.5e-13 1
SGD|S000004267 - symbol:YSH1 "Putative endoribonuclease" ... 213 3.6e-13 2
CGD|CAL0005344 - symbol:orf19.5486 species:5476 "Candida ... 199 3.3e-12 1
UNIPROTKB|Q59P50 - symbol:YSH1 "Endoribonuclease YSH1" sp... 199 3.3e-12 1
ASPGD|ASPL0000060573 - symbol:AN0990 species:162425 "Emer... 198 4.3e-12 1
UNIPROTKB|G5E9W3 - symbol:CPSF3 "Cleavage and polyadenyla... 196 4.4e-12 1
GENEDB_PFALCIPARUM|PF14_0364 - symbol:PF14_0364 "cleavage... 196 4.7e-11 2
UNIPROTKB|Q8IL83 - symbol:PF14_0364 "Cleavage and polyade... 196 4.7e-11 2
UNIPROTKB|Q8EJC6 - symbol:SO_0541 "RNA-metabolizing metal... 163 5.6e-09 2
TIGR_CMR|SO_0541 - symbol:SO_0541 "metallo-beta-lactamase... 163 5.6e-09 2
TIGR_CMR|DET_1061 - symbol:DET_1061 "metallo-beta-lactama... 163 1.0e-08 1
UNIPROTKB|G3V2W8 - symbol:COQ6 "Ubiquinone biosynthesis m... 137 2.6e-08 1
TIGR_CMR|NSE_0384 - symbol:NSE_0384 "ubiquinone biosynthe... 109 3.3e-08 2
TIGR_CMR|SPO_3419 - symbol:SPO_3419 "ubiquinone biosynthe... 153 1.1e-07 1
TIGR_CMR|CHY_2049 - symbol:CHY_2049 "metallo-beta-lactama... 152 1.9e-07 1
DICTYBASE|DDB_G0292328 - symbol:iliM "FAD-binding monooxy... 150 2.3e-07 1
TIGR_CMR|CBU_0075 - symbol:CBU_0075 "2-octaprenyl-6-metho... 147 4.6e-07 1
UNIPROTKB|Q74C32 - symbol:GSU1843 "RNA exonuclease, beta-... 145 1.0e-06 1
TIGR_CMR|GSU_1843 - symbol:GSU_1843 "metallo-beta-lactama... 145 1.0e-06 1
TAIR|locus:2172843 - symbol:CPSF100 "cleavage and polyade... 142 4.1e-06 1
DICTYBASE|DDB_G0270392 - symbol:cpsf2 "cleavage and polya... 141 5.7e-06 1
UNIPROTKB|Q9KV92 - symbol:VC_0264 "Putative uncharacteriz... 141 1.0e-05 2
TIGR_CMR|VC_0264 - symbol:VC_0264 "conserved hypothetical... 141 1.0e-05 2
TIGR_CMR|DET_0438 - symbol:DET_0438 "metallo-beta-lactama... 133 2.6e-05 1
UNIPROTKB|Q81SC3 - symbol:BA_1737 "Metallo-beta-lactamase... 131 2.8e-05 1
TIGR_CMR|BA_1737 - symbol:BA_1737 "metallo-beta-lactamase... 131 2.8e-05 1
WARNING: Descriptions of 8 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-060825-297 [details] [associations]
symbol:coq6 "coenzyme Q6 homolog, monooxygenase (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0016709 "oxidoreductase
activity, acting on paired donors, with incorporation or reduction
of molecular oxygen, NAD(P)H as one donor, and incorporation of one
atom of oxygen" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0004497 "monooxygenase activity"
evidence=IEA] [GO:0006744 "ubiquinone biosynthetic process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0042995 "cell
projection" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] InterPro:IPR000689 InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 UniPathway:UPA00232 InterPro:IPR002938 Pfam:PF01494
ZFIN:ZDB-GENE-060825-297 GO:GO:0005794 GO:GO:0050660 GO:GO:0006744
GO:GO:0042995 GO:GO:0016709 CTD:51004 GeneTree:ENSGT00390000015152
KO:K06126 TIGRFAMs:TIGR01989 TIGRFAMs:TIGR01988 EMBL:BX936443
EMBL:BC122260 IPI:IPI00786743 RefSeq:NP_001038869.1
UniGene:Dr.85096 ProteinModelPortal:F1RAX8
Ensembl:ENSDART00000085009 GeneID:751691 KEGG:dre:751691
OMA:LTFWDYG NextBio:20917839 Bgee:F1RAX8 Uniprot:F1RAX8
Length = 484
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 149/343 (43%), Positives = 214/343 (62%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN--IDIVYQKKVAHYEL 200
+VW SD L+ F+K N QD ++YIVEND+I+ A+TK+L TL+ + + Y+ KV Y
Sbjct: 134 QVWDACSDALITFDK-ENLQDEMAYIVENDVIVAALTKQLQTLSDHVKVQYRTKVVKYTW 192
Query: 201 PE-----QPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATV 255
P + + V++ +G+++ KLL+G DG S VR + W+YDQ +VA +
Sbjct: 193 PHPYHVSESIPWVQVALANGKTLHTKLLIGADGPNSMVRREAGIPTVKWNYDQSAVVAVL 252
Query: 256 KISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSE 315
+S N AWQRF P+G +A+LPLSD SSLVW+T+ ++A+ LLQM ESFVDA+NS
Sbjct: 253 HLSEPTENNVAWQRFLPTGPIAMLPLSDTESSLVWSTSHQHAEELLQMDEESFVDAINSA 312
Query: 316 FNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRY 375
F +E ++ A L +G+ + +PP V + KSR FPLG GH+ Y
Sbjct: 313 FWSNENHSELVETAGSLFRMALSVLMPDSGSARQLPPSVSGIGPKSRVMFPLGMGHATEY 372
Query: 376 IGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIR 435
I AL+GD+AHR+HPLAGQG NLGFGD++ L Q+ +++ NG IG + L ++E+ R
Sbjct: 373 IRHRVALIGDAAHRVHPLAGQGANLGFGDVSYLTQVLSQAAYNGKDIGAMQHLLEFETER 432
Query: 436 QRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
QR NLP+M +IDLM R+Y S+ P+ +L G Q NAV P+K
Sbjct: 433 QRHNLPMMTAIDLMKRLYSSNTAPMVLLRTFGLQATNAVPPLK 475
Score = 138 (53.6 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKXXXXXXXXXXXXXXXXXXXXX 570
+D++ISGGGM+GT +AC++ +P L IL++E+G EK
Sbjct: 51 FDIIISGGGMVGTAMACSLGLDPNLTGKKILLLEAGHEKKMDKIPETYSTRVSSISPGSA 110
Query: 571 KQLFETIGAWDHIESTRTCTVDNMK 595
L +GAWDHI + R + M+
Sbjct: 111 T-LLSGLGAWDHIVNMRCKPYNKMQ 134
>RGD|1311149 [details] [associations]
symbol:Coq6 "coenzyme Q6 homolog, monooxygenase (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0006744 "ubiquinone biosynthetic process" evidence=IEA]
[GO:0016709 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
[GO:0042995 "cell projection" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR000689
InterPro:IPR003042 InterPro:IPR010971 InterPro:IPR018168
PRINTS:PR00420 PROSITE:PS01304 UniPathway:UPA00232
InterPro:IPR002938 Pfam:PF01494 RGD:1311149 GO:GO:0005739
GO:GO:0005794 GO:GO:0050660 eggNOG:COG0654 GO:GO:0006744
GO:GO:0042995 EMBL:CH473982 GO:GO:0016709 CTD:51004
GeneTree:ENSGT00390000015152 HOGENOM:HOG000255772
HOVERGEN:HBG029533 KO:K06126 OMA:CRRWAGA OrthoDB:EOG47M1XV
TIGRFAMs:TIGR01989 TIGRFAMs:TIGR01988 EMBL:BC079342 IPI:IPI00471550
RefSeq:NP_001011983.1 UniGene:Rn.9283 ProteinModelPortal:Q68FU7
STRING:Q68FU7 PhosphoSite:Q68FU7 PRIDE:Q68FU7
Ensembl:ENSRNOT00000014913 GeneID:299195 KEGG:rno:299195
UCSC:RGD:1311149 InParanoid:Q68FU7 NextBio:644961
Genevestigator:Q68FU7 Uniprot:Q68FU7
Length = 476
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 145/343 (42%), Positives = 207/343 (60%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL--NIDIVYQKKVAHYEL 200
+VW S+ L+ F+K N D + YIVEND+I+ A+TK+L + + ++Y+ K Y
Sbjct: 127 QVWDSCSEALIMFDK-DNLDD-MGYIVENDVIMHAITKQLEAVADRVKVLYESKAVGYAW 184
Query: 201 PEQ-PLNN----VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATV 255
P L + V I G +++ KLL+G DG S VR A +Q W+YDQ +VAT+
Sbjct: 185 PGPFSLADSSPWVHITLGDGSTLQTKLLIGADGHNSGVRQAAGIQNVGWNYDQSAVVATL 244
Query: 256 KISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSE 315
+S + N AWQRF PSG +ALLPLSD SSLVW+T+ +A L+ M E FVDA+NS
Sbjct: 245 HLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHAHAAELVSMHEEEFVDAINSA 304
Query: 316 FNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRY 375
F + + A+ H+ + + + + +PP V V+ KSRA FPLG GH+ Y
Sbjct: 305 FWSDVHHTDFVDSASAMVHHAVALLKPTKVSARQLPPSVAKVDAKSRALFPLGLGHAAEY 364
Query: 376 IGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIR 435
+ P AL+GD+AHR+HPLAGQGVN+GFGDI+ L+ + + NG +G LT YE+ R
Sbjct: 365 VRPRVALIGDAAHRVHPLAGQGVNMGFGDISSLIHYLSTAAFNGKDLGSMSHLTGYETDR 424
Query: 436 QRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
QR N ++ + DL+ R+Y +S TP+ +L G Q NAV P+K
Sbjct: 425 QRHNTALLAATDLLKRLYSTSTTPLVLLRTWGLQATNAVSPLK 467
Score = 152 (58.6 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 37/116 (31%), Positives = 56/116 (48%)
Query: 474 VRPIKSILCDIFMRTSM--EKVTLLVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQ 531
+ P+ +LC + T+ + LV R+ SS YDVV+SGGGM+G+ +ACA+
Sbjct: 5 IGPMAGLLCVRWWSTAQLAARGGPLVACRRWTSSSTDSVYDVVVSGGGMVGSAMACALGH 64
Query: 532 NPTLKDLSILMIESGPEKXXXXXXXXXXXXXXXXXXXXXKQLFETIGAWDHIESTR 587
+ D IL++E+GP+K L + GAWDHI + R
Sbjct: 65 DIHFHDKKILLLEAGPKKTLEKLSETYSNRVSSISLGSTT-LLSSFGAWDHICNMR 119
>UNIPROTKB|F1S3H4 [details] [associations]
symbol:COQ6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0016709
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
[GO:0006744 "ubiquinone biosynthetic process" evidence=IEA]
InterPro:IPR000689 InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
InterPro:IPR002938 Pfam:PF01494 GO:GO:0005739 GO:GO:0050660
GO:GO:0006744 GO:GO:0016709 GeneTree:ENSGT00390000015152
OMA:CRRWAGA TIGRFAMs:TIGR01989 TIGRFAMs:TIGR01988 EMBL:CT797481
Ensembl:ENSSSCT00000002618 Uniprot:F1S3H4
Length = 476
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 146/344 (42%), Positives = 208/344 (60%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN--IDIVYQKKVAHYEL 200
+VW S+ L+ F+K N D + YIVEND+I+ A+TK+L ++ + ++Y+ K Y
Sbjct: 127 QVWDACSEALIMFDK-DNLDD-MGYIVENDVIMQALTKQLEAVSDRVTVLYKSKAVSYTW 184
Query: 201 PEQPLNN------VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVAT 254
P P + V I G +++ KLL+G DG S VR A ++ +W+YDQ +VAT
Sbjct: 185 P-YPFSMADSSPWVHITLGDGSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVAT 243
Query: 255 VKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNS 314
+ +S N AWQRF PSG +ALLPLSD SSLVW+T+ E+A L+ M E FVDA+NS
Sbjct: 244 LHLSEPTENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINS 303
Query: 315 EFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVR 374
F A + + A+ H V+ + + + +PP V V+ KS+ FPLG GH+
Sbjct: 304 AFWSDANHTDLVDSASSVLHYVVSILKPTKVSARQLPPSVAKVDAKSQVLFPLGLGHAAE 363
Query: 375 YIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESI 434
Y+ P AL+GD+AHR+HPLAGQGVN+GFGDI+ LV + NG +G LT YE+
Sbjct: 364 YVRPRLALIGDAAHRVHPLAGQGVNMGFGDISSLVHHLRTAAFNGKDLGSMSHLTGYETD 423
Query: 435 RQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
RQR N ++ + DL+ R+Y +S TP+ +L G Q NAV P+K
Sbjct: 424 RQRHNTALLAATDLLKRLYSTSATPLVLLRTWGLQATNAVSPLK 467
Score = 137 (53.3 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 496 LVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKXXXXXX 555
LV R+ + YDVV+SGGGM+G +ACA+ + D IL++E+GP+K
Sbjct: 29 LVSCRRWAGATADTVYDVVVSGGGMVGAAMACALGHDIHFGDKKILLLEAGPKKVLGKLP 88
Query: 556 XXXXXXXXXXXXXXXKQLFETIGAWDHIESTR 587
L + GAWDHI + R
Sbjct: 89 ETYSNRVSSISPGSAT-LLSSFGAWDHICNMR 119
>MGI|MGI:1924408 [details] [associations]
symbol:Coq6 "coenzyme Q6 homolog (yeast)" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0004497
"monooxygenase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0006744 "ubiquinone biosynthetic process" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008152
"metabolic process" evidence=IEA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0016709 "oxidoreductase activity,
acting on paired donors, with incorporation or reduction of
molecular oxygen, NAD(P)H as one donor, and incorporation of one
atom of oxygen" evidence=IEA] [GO:0042995 "cell projection"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR000689 InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 UniPathway:UPA00232 InterPro:IPR002938 Pfam:PF01494
MGI:MGI:1924408 GO:GO:0005739 GO:GO:0005794 GO:GO:0050660
eggNOG:COG0654 GO:GO:0006744 GO:GO:0042995 EMBL:CH466590
GO:GO:0016709 CTD:51004 GeneTree:ENSGT00390000015152
HOVERGEN:HBG029533 KO:K06126 OMA:CRRWAGA OrthoDB:EOG47M1XV
TIGRFAMs:TIGR01989 TIGRFAMs:TIGR01988 EMBL:AK077863 EMBL:AK131889
EMBL:AK167380 EMBL:AC120402 EMBL:BC024135 EMBL:BC051055
EMBL:BC132168 EMBL:BC132170 IPI:IPI00222526 RefSeq:NP_766170.2
UniGene:Mm.280062 ProteinModelPortal:Q8R1S0 SMR:Q8R1S0
STRING:Q8R1S0 PhosphoSite:Q8R1S0 PaxDb:Q8R1S0 PRIDE:Q8R1S0
Ensembl:ENSMUST00000021661 Ensembl:ENSMUST00000110276 GeneID:217707
KEGG:mmu:217707 InParanoid:Q8R1S0 NextBio:375980 Bgee:Q8R1S0
CleanEx:MM_COQ6 Genevestigator:Q8R1S0 GermOnline:ENSMUSG00000021235
Uniprot:Q8R1S0
Length = 476
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 144/343 (41%), Positives = 208/343 (60%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL--NIDIVYQKKVAHYEL 200
+VW S+ L+ F++ N D + YIVEND+I+ A+TK+L + + ++Y+ K Y
Sbjct: 127 QVWDSCSEALIMFDR-DNLDD-MGYIVENDVIMYALTKQLEAVADRVKVLYESKAVGYSW 184
Query: 201 PEQ-PLNN----VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATV 255
P + + V I G +++ KLL+G DG +S VR A +Q +W YDQ +VAT+
Sbjct: 185 PGAFSMADSSPWVHITLGDGSTLQTKLLIGADGHKSGVRQAAGIQNVSWKYDQSAVVATL 244
Query: 256 KISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSE 315
+S + N AWQRF PSG +ALLPLSD SSLVW+T+ E+A L+ M E FVDA+NS
Sbjct: 245 HLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEEFVDAINSA 304
Query: 316 FNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRY 375
F + + A+ + + + + + +PP + V+ KSRA FPLG GH+ Y
Sbjct: 305 FWSDVHHTDFVDSASAMVRHAVALLKPTKVSARQLPPSIAKVDAKSRALFPLGLGHAAEY 364
Query: 376 IGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIR 435
+ P AL+GD+AHRIHPLAGQGVN+GFGDI+ LV + + NG +G LT YE+ R
Sbjct: 365 VRPRVALIGDAAHRIHPLAGQGVNMGFGDISSLVHHLSTAAFNGKDLGSMSHLTGYETDR 424
Query: 436 QRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
QR N ++ + DL+ R+Y +S TP+ +L G Q NAV P+K
Sbjct: 425 QRHNTALLAATDLLKRLYSTSATPLVLLRTWGLQATNAVSPLK 467
Score = 145 (56.1 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 31/92 (33%), Positives = 46/92 (50%)
Query: 496 LVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKXXXXXX 555
LV + R+ S YDVV+SGGG++G+ +ACA+ + D IL++E+GP+K
Sbjct: 29 LVASQRWAGSSADTVYDVVVSGGGLVGSAMACALGHDIHFHDKKILLLEAGPKKALEKLS 88
Query: 556 XXXXXXXXXXXXXXXKQLFETIGAWDHIESTR 587
L + GAWDHI + R
Sbjct: 89 ETYSNRVSSISPGSTT-LLSSFGAWDHICNMR 119
>UNIPROTKB|G3XA86 [details] [associations]
symbol:COQ6 "Coenzyme Q6 homolog, monooxygenase (Yeast),
isoform CRA_a" species:9606 "Homo sapiens" [GO:0006744 "ubiquinone
biosynthetic process" evidence=IEA] [GO:0016709 "oxidoreductase
activity, acting on paired donors, with incorporation or reduction
of molecular oxygen, NAD(P)H as one donor, and incorporation of one
atom of oxygen" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] InterPro:IPR000689
InterPro:IPR003042 InterPro:IPR010971 InterPro:IPR018168
PRINTS:PR00420 PROSITE:PS01304 InterPro:IPR002938 Pfam:PF01494
EMBL:CH471061 GO:GO:0050660 GO:GO:0006744 GO:GO:0016709
TIGRFAMs:TIGR01989 TIGRFAMs:TIGR01988 EMBL:AC005480
UniGene:Hs.131555 HGNC:HGNC:20233 ProteinModelPortal:G3XA86
Ensembl:ENST00000238709 ArrayExpress:G3XA86 Bgee:G3XA86
Uniprot:G3XA86
Length = 393
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 146/344 (42%), Positives = 208/344 (60%)
Query: 142 SKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN--IDIVYQKKVAHYE 199
S VW S+ L+ F+K N D + YIVEND+I+ A+TK+L ++ + ++Y+ K Y
Sbjct: 43 SVVWDACSEALIMFDK-DNLDD-MGYIVENDVIMHALTKQLEAVSDRVTVLYRSKAIRYT 100
Query: 200 LP-EQPLNN----VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVAT 254
P P+ + V I G + + KLL+G DG S VR A+ +Q +W+YDQ +VAT
Sbjct: 101 WPCPFPMADSSPWVHITLGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVAT 160
Query: 255 VKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNS 314
+ +S + N AWQRF PSG +ALLPLSD SSLVW+T+ E+A L+ M E FVDA+NS
Sbjct: 161 LHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNS 220
Query: 315 EFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVR 374
F A+ + I A + + + + +PP V V+ KSR FPLG GH+
Sbjct: 221 AFWSDADHTDFIDTAGAMLQYAVSLLKPTKVSARQLPPSVARVDAKSRVLFPLGLGHAAE 280
Query: 375 YIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESI 434
Y+ P AL+GD+AHR+HPLAGQGVN+GFGDI+ L + + NG +G LT YE+
Sbjct: 281 YVRPRVALIGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETE 340
Query: 435 RQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
RQR N ++ + DL+ R+Y +S +P+ +L G Q NAV P+K
Sbjct: 341 RQRHNTALLAATDLLKRLYSTSASPLVLLRTWGLQATNAVSPLK 384
>UNIPROTKB|Q9Y2Z9 [details] [associations]
symbol:COQ6 "Ubiquinone biosynthesis monooxygenase COQ6"
species:9606 "Homo sapiens" [GO:0016709 "oxidoreductase activity,
acting on paired donors, with incorporation or reduction of
molecular oxygen, NAD(P)H as one donor, and incorporation of one
atom of oxygen" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0006744 "ubiquinone biosynthetic process" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000689
InterPro:IPR003042 InterPro:IPR010971 InterPro:IPR018168
PRINTS:PR00420 PROSITE:PS01304 UniPathway:UPA00232
InterPro:IPR002938 Pfam:PF01494 GO:GO:0005739 GO:GO:0005794
EMBL:CH471061 GO:GO:0050660 eggNOG:COG0654 GO:GO:0006744
GO:GO:0042995 GO:GO:0016709 CTD:51004 HOGENOM:HOG000255772
HOVERGEN:HBG029533 KO:K06126 OMA:CRRWAGA OrthoDB:EOG47M1XV
TIGRFAMs:TIGR01989 TIGRFAMs:TIGR01988 EMBL:AF132944 EMBL:AK296040
EMBL:BX248000 EMBL:AK222965 EMBL:AC005480 EMBL:BC014181
EMBL:BC014483 IPI:IPI00032633 RefSeq:NP_872282.1 RefSeq:NP_872286.2
UniGene:Hs.131555 ProteinModelPortal:Q9Y2Z9 SMR:Q9Y2Z9
IntAct:Q9Y2Z9 STRING:Q9Y2Z9 PhosphoSite:Q9Y2Z9 DMDM:26006952
PaxDb:Q9Y2Z9 PRIDE:Q9Y2Z9 DNASU:51004 Ensembl:ENST00000334571
Ensembl:ENST00000394026 GeneID:51004 KEGG:hsa:51004 UCSC:uc001xph.3
GeneCards:GC14P074416 HGNC:HGNC:20233 HPA:HPA051371 MIM:614647
MIM:614650 neXtProt:NX_Q9Y2Z9 Orphanet:280406 PharmGKB:PA134940980
InParanoid:Q9Y2Z9 PhylomeDB:Q9Y2Z9 GenomeRNAi:51004 NextBio:53468
ArrayExpress:Q9Y2Z9 Bgee:Q9Y2Z9 CleanEx:HS_COQ6
Genevestigator:Q9Y2Z9 GermOnline:ENSG00000119723 Uniprot:Q9Y2Z9
Length = 468
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 145/343 (42%), Positives = 208/343 (60%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN--IDIVYQKKVAHYEL 200
+VW S+ L+ F+K N D + YIVEND+I+ A+TK+L ++ + ++Y+ K Y
Sbjct: 119 QVWDACSEALIMFDK-DNLDD-MGYIVENDVIMHALTKQLEAVSDRVTVLYRSKAIRYTW 176
Query: 201 P-EQPLNN----VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATV 255
P P+ + V I G + + KLL+G DG S VR A+ +Q +W+YDQ +VAT+
Sbjct: 177 PCPFPMADSSPWVHITLGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVATL 236
Query: 256 KISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSE 315
+S + N AWQRF PSG +ALLPLSD SSLVW+T+ E+A L+ M E FVDA+NS
Sbjct: 237 HLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNSA 296
Query: 316 FNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRY 375
F A+ + I A + + + + +PP V V+ KSR FPLG GH+ Y
Sbjct: 297 FWSDADHTDFIDTAGAMLQYAVSLLKPTKVSARQLPPSVARVDAKSRVLFPLGLGHAAEY 356
Query: 376 IGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIR 435
+ P AL+GD+AHR+HPLAGQGVN+GFGDI+ L + + NG +G LT YE+ R
Sbjct: 357 VRPRVALIGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETER 416
Query: 436 QRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
QR N ++ + DL+ R+Y +S +P+ +L G Q NAV P+K
Sbjct: 417 QRHNTALLAATDLLKRLYSTSASPLVLLRTWGLQATNAVSPLK 459
Score = 138 (53.6 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 31/102 (30%), Positives = 48/102 (47%)
Query: 486 MRTSMEKVTLLVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIES 545
+R + L+ W R+ + YDVV+SGGG++G +ACA+ + D IL++E+
Sbjct: 12 VRAAPHSGPLVSWR-RWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEA 70
Query: 546 GPEKXXXXXXXXXXXXXXXXXXXXXKQLFETIGAWDHIESTR 587
GP+K L + GAWDHI + R
Sbjct: 71 GPKKVLEKLSETYSNRVSSISPGSAT-LLSSFGAWDHICNMR 111
>UNIPROTKB|F1PBF7 [details] [associations]
symbol:COQ6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0016709 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
[GO:0006744 "ubiquinone biosynthetic process" evidence=IEA]
InterPro:IPR000689 InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
InterPro:IPR002938 Pfam:PF01494 GO:GO:0005739 GO:GO:0050660
GO:GO:0006744 GO:GO:0016709 CTD:51004 GeneTree:ENSGT00390000015152
KO:K06126 OMA:CRRWAGA TIGRFAMs:TIGR01989 TIGRFAMs:TIGR01988
EMBL:AAEX03005843 RefSeq:XP_547900.1 ProteinModelPortal:F1PBF7
Ensembl:ENSCAFT00000026739 GeneID:490778 KEGG:cfa:490778
Uniprot:F1PBF7
Length = 469
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 147/344 (42%), Positives = 206/344 (59%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN--IDIVYQKKVAHYEL 200
+VW S+ L+ F+K N D + YIVEND+I+ A+TK+L + + ++Y+ K Y
Sbjct: 120 QVWDACSEALIMFDK-DNLDD-MGYIVENDVIMRALTKQLEAASDRVTVLYRSKAVGYTW 177
Query: 201 PEQPLNN------VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVAT 254
P P V I G +++ KLL+G DG S VR A +Q +W+YDQ +VAT
Sbjct: 178 P-YPFTMADSSPWVHITLGDGSTLQTKLLVGADGHNSGVRQAAGIQNVSWNYDQSAVVAT 236
Query: 255 VKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNS 314
+ +S + N AWQRF PSG +ALLPLSD SSLVW+T+ E+A L+ M E FVDA+NS
Sbjct: 237 LHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINS 296
Query: 315 EFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVR 374
F A + I A + F + + + +PP V V+ KSR FPLG GH+
Sbjct: 297 AFWSDANHTDFIDSAGAMLQYAVAFLKPTKVSARQLPPSVARVDAKSRVLFPLGLGHAAE 356
Query: 375 YIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESI 434
Y+ P AL+GD+AHR+HPLAGQGVN+GFGD++ LV + + NG +G LT YE+
Sbjct: 357 YVRPRLALIGDAAHRVHPLAGQGVNMGFGDVSSLVHHLSAAAFNGKDLGSMSHLTGYETD 416
Query: 435 RQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
RQR N ++ + DL+ R+Y +S TP+ +L G Q NAV P+K
Sbjct: 417 RQRHNTALLAATDLLKRLYSTSATPLVLLRTWGLQATNAVSPLK 460
Score = 136 (52.9 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKXXXXXXXXXXXXXXXXXXXXX 570
YDVV+SGGG++G +ACA+ N D IL++E+GP+K
Sbjct: 37 YDVVVSGGGLVGAAMACALGYNIHFHDKKILLLEAGPKKVWEKLPETYSNRVSSISPGSA 96
Query: 571 KQLFETIGAWDHIESTR 587
L + GAWDHI + R
Sbjct: 97 T-LLSSFGAWDHICNMR 112
>UNIPROTKB|Q2KIL4 [details] [associations]
symbol:COQ6 "Ubiquinone biosynthesis monooxygenase COQ6"
species:9913 "Bos taurus" [GO:0006744 "ubiquinone biosynthetic
process" evidence=IEA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0016709
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
InterPro:IPR000689 InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
UniPathway:UPA00232 InterPro:IPR002938 Pfam:PF01494 GO:GO:0005794
GO:GO:0050660 eggNOG:COG0654 GO:GO:0006744 GO:GO:0042995
GO:GO:0016709 EMBL:DAAA02029604 EMBL:BC112594 IPI:IPI00711003
RefSeq:NP_001039558.1 UniGene:Bt.52419 STRING:Q2KIL4 PRIDE:Q2KIL4
Ensembl:ENSBTAT00000027093 GeneID:511624 KEGG:bta:511624 CTD:51004
GeneTree:ENSGT00390000015152 HOGENOM:HOG000255772
HOVERGEN:HBG029533 InParanoid:Q2KIL4 KO:K06126 OMA:CRRWAGA
OrthoDB:EOG47M1XV NextBio:20870022 TIGRFAMs:TIGR01989
TIGRFAMs:TIGR01988 Uniprot:Q2KIL4
Length = 469
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 144/344 (41%), Positives = 206/344 (59%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN--IDIVYQKKVAHYEL 200
+VW S+ L+ F+K N D + YIVEND+I+ A+TK+L ++ + ++Y+ K Y
Sbjct: 120 QVWDACSEALIMFDK-DNLDD-MGYIVENDVIMHALTKQLEAVSDQVTVLYKSKAVSYTW 177
Query: 201 PEQPLNN------VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVAT 254
P P + V I G +++ KLL+G DG S VR A ++ +W+YDQ +VAT
Sbjct: 178 P-YPFSMADSSPWVHITLGDGRTLQTKLLIGADGHNSGVRQAAGIRNVSWNYDQSAVVAT 236
Query: 255 VKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNS 314
+ +S + N AWQRF PSG +ALLPLSD SSLVW+T+ E+A L+ M E FVDA+NS
Sbjct: 237 LHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMEEEEFVDAINS 296
Query: 315 EFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVR 374
F + I A + + F + + + +PP V V+ KSR FPLG GH+
Sbjct: 297 AFWSDVNHTDFIDSAGSMLQSAVAFLKPTRVSARQLPPSVARVDAKSRVLFPLGLGHAAE 356
Query: 375 YIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESI 434
Y+ P AL+GD+AHR+HPLAGQGVN+GFGDI+ L+ + + NG +G LT YE+
Sbjct: 357 YVRPRLALIGDAAHRVHPLAGQGVNMGFGDISSLLHHLSTAAFNGKDLGSMSHLTSYETD 416
Query: 435 RQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
RQR N ++ + DL+ R+Y + T V +L G Q NAV P+K
Sbjct: 417 RQRHNTALLAATDLLKRLYSTRATLVVLLRTWGLQATNAVSPLK 460
Score = 132 (51.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 501 RYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKXXXXXXXXXXX 560
R+ + YDVV+SGGG++G +ACA+ + D IL++E+GP+K
Sbjct: 27 RWAGASADNVYDVVVSGGGLVGAAMACALGHDIHFCDKKILLLEAGPKKVLEKLPETYSN 86
Query: 561 XXXXXXXXXXKQLFETIGAWDHIESTR 587
L + GAWDHI + R
Sbjct: 87 RVSSISPGSAT-LLSSFGAWDHICNMR 112
>WB|WBGene00000766 [details] [associations]
symbol:coq-6 species:6239 "Caenorhabditis elegans"
[GO:0006744 "ubiquinone biosynthetic process" evidence=IEA;IMP]
[GO:0004497 "monooxygenase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0016709 "oxidoreductase activity, acting on
paired donors, with incorporation or reduction of molecular oxygen,
NAD(P)H as one donor, and incorporation of one atom of oxygen"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] InterPro:IPR000689 InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 UniPathway:UPA00232 InterPro:IPR002938 Pfam:PF01494
GO:GO:0008340 GO:GO:0005794 GO:GO:0050660 eggNOG:COG0654
GO:GO:0006744 GO:GO:0016709 GeneTree:ENSGT00390000015152
HOGENOM:HOG000255772 KO:K06126 TIGRFAMs:TIGR01989
TIGRFAMs:TIGR01988 EMBL:FO081028 PIR:T15254 RefSeq:NP_505415.2
ProteinModelPortal:O01884 SMR:O01884 STRING:O01884 PaxDb:O01884
EnsemblMetazoa:K07B1.2.1 EnsemblMetazoa:K07B1.2.2 GeneID:179316
KEGG:cel:CELE_K07B1.2 UCSC:K07B1.2 CTD:179316 WormBase:K07B1.2
InParanoid:O01884 OMA:AMTAHHT NextBio:904868 Uniprot:O01884
Length = 451
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 147/344 (42%), Positives = 213/344 (61%)
Query: 144 VWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELPE 202
V+ S +EF + Q+ +++I+ENDLI+ ++ +KL N+D+ KV +P
Sbjct: 104 VFDSCSTSEIEFERGQ--QEEVAFIIENDLIVGSLYEKLAEYKNVDVKTGAKVEDCSIPN 161
Query: 203 QPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSP- 261
N IK E+G+ IE LL+G DG S+VR+A N+ Y+ ++Y+Q G+VA V I T+
Sbjct: 162 ALENMATIKLENGDVIETSLLIGADGVNSKVRHASNLDYTTFNYNQHGLVAIVNIETANG 221
Query: 262 PNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSE-FNKPA 320
N TAWQRFT G VALLPLSD S L W+T+PE A+ L Q+P + FVD LNS F++
Sbjct: 222 KNETAWQRFTTLGPVALLPLSDTVSGLTWSTSPEEAQRLKQLPSDQFVDELNSALFSQNN 281
Query: 321 ELNESIQVATKFTHNVLEFFNLST-GN--EQVVPPRVMSVEEKSRAAFPLGFGHSVRYIG 377
++ Q T F N + F T G E PP V++V++KSRA+FPLGFG++ YI
Sbjct: 282 QIPLVNQ--TIFALNRMNPFRTETFGRKAEGTTPPHVITVQDKSRASFPLGFGNAHSYIT 339
Query: 378 PGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQR 437
CAL+GD+AHR+HPLAGQGVNLG+ D+ L ++ ++V G IG L +Y+S Q+
Sbjct: 340 TRCALIGDAAHRMHPLAGQGVNLGWSDVQILDKVLGDAVREGADIGSITYLREYDSAAQK 399
Query: 438 ENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
NLPVM+S+DL+ R+YR+ + G N++ P+K+ L
Sbjct: 400 HNLPVMVSVDLLNRLYRTDAPAIVAARAFGLNAFNSLGPVKNFL 443
Score = 118 (46.6 bits), Expect = 0.00083, P = 0.00083
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKXXXXXXXXXXXXXXXXXXXXX 570
YD VI GGGM+G +AC++ N + + S+L++++G
Sbjct: 18 YDTVIVGGGMVGNAMACSLGANKSFQSKSVLLLDAGRSPSLASFKPGAPFNNRVVATSPT 77
Query: 571 K-QLFETIGAWDHIESTRTCTVDNM 594
F+ +G WD I S RT V+ +
Sbjct: 78 SIDTFKKLGVWDQINSHRTKKVNRL 102
>UNIPROTKB|F1NBR7 [details] [associations]
symbol:COQ6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006744 "ubiquinone biosynthetic process" evidence=IEA]
[GO:0016709 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR000689
InterPro:IPR003042 InterPro:IPR010971 InterPro:IPR018168
PRINTS:PR00420 PROSITE:PS01304 InterPro:IPR002938 Pfam:PF01494
GO:GO:0005739 GO:GO:0050660 GO:GO:0006744 GO:GO:0016709
GeneTree:ENSGT00390000015152 TIGRFAMs:TIGR01989 TIGRFAMs:TIGR01988
OMA:LTFWDYG EMBL:AADN02003433 IPI:IPI00571317
ProteinModelPortal:F1NBR7 Ensembl:ENSGALT00000016576 Uniprot:F1NBR7
Length = 470
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 141/343 (41%), Positives = 208/343 (60%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL--NIDIVYQKKVAHYE- 199
+VW S+ ++ F K + D + YIVEND+++ AVTK+L+ + +++ Y + Y
Sbjct: 121 QVWDACSEAIITFEK--DDLDDMGYIVENDVVMSAVTKQLDAVADRVEVFYGSRAVGYTW 178
Query: 200 -LPEQPLNN---VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATV 255
LP + V+++ G ++ KLL+G DG S VR +Q YDQ +VAT+
Sbjct: 179 PLPSHSCDTSPWVQVELADGRRLQTKLLIGADGHNSVVRKEAEIQNIEHQYDQSAVVATL 238
Query: 256 KISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSE 315
+S + N AWQRF P+G +ALLPLSD SSLVW+T+ E+A LL M ESFVD++NS
Sbjct: 239 HLSEATDNNVAWQRFLPTGPIALLPLSDTASSLVWSTSHEHASELLTMDKESFVDSINSA 298
Query: 316 FNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRY 375
F ++ I A + L S + +PP V +V+ +SRA FPLG GH+ Y
Sbjct: 299 FWSNVNHSDFIDAAGAMFRSALSLLKPSGTAVRQLPPSVANVDPESRAVFPLGMGHATEY 358
Query: 376 IGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIR 435
+ AL+GD+AHR+HPLAGQGVNLGFGDIACL + + NG +G + L ++E+ R
Sbjct: 359 VRHRVALIGDAAHRVHPLAGQGVNLGFGDIACLTHHLSAAAFNGQDLGSLKHLLRFETER 418
Query: 436 QRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
QR N+ ++ +IDL+ R+Y +SL+P+ +L G Q NA+ P+K
Sbjct: 419 QRHNVSLIGAIDLLKRLYSTSLSPLVLLRTWGLQATNALPPVK 461
Score = 121 (47.7 bits), Expect = 0.00042, P = 0.00042
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKXXXXXXXXXXXXXXXXXXXXX 570
YDVV+SGGGM+G+ +A A+ + D I ++E+GP K
Sbjct: 39 YDVVVSGGGMVGSAMAAALGHDIHFHDKKIALLEAGPRKEYHLPESYSNRVSSISPGSAT 98
Query: 571 KQLFETIGAWDHIESTR 587
L + GAWDH+ + R
Sbjct: 99 --LLSSFGAWDHVCNLR 113
>FB|FBgn0031713 [details] [associations]
symbol:CG7277 species:7227 "Drosophila melanogaster"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0006744
"ubiquinone biosynthetic process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0016709
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
InterPro:IPR000689 InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
UniPathway:UPA00232 InterPro:IPR002938 Pfam:PF01494 GO:GO:0005794
EMBL:AE014134 GO:GO:0050660 eggNOG:COG0654 GO:GO:0006744
GO:GO:0016709 GeneTree:ENSGT00390000015152 KO:K06126
TIGRFAMs:TIGR01989 TIGRFAMs:TIGR01988 OMA:LTFWDYG EMBL:AY058443
RefSeq:NP_608934.1 UniGene:Dm.311 ProteinModelPortal:Q9VMQ5
SMR:Q9VMQ5 DIP:DIP-21077N MINT:MINT-1022882 STRING:Q9VMQ5
PaxDb:Q9VMQ5 PRIDE:Q9VMQ5 EnsemblMetazoa:FBtr0079128 GeneID:33777
KEGG:dme:Dmel_CG7277 UCSC:CG7277-RA FlyBase:FBgn0031713
InParanoid:Q9VMQ5 OrthoDB:EOG4905R8 PhylomeDB:Q9VMQ5
GenomeRNAi:33777 NextBio:785198 Bgee:Q9VMQ5 GermOnline:CG7277
Uniprot:Q9VMQ5
Length = 477
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 147/365 (40%), Positives = 218/365 (59%)
Query: 130 IQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAV-TKKLNTLNID 188
I+ +Y +K +VW ++D L++F N+ ++ I+ENDLI+DAV + N++
Sbjct: 120 IESARYKPVK-QMQVWESNTDALIQFQH-DNFASDVACIIENDLILDAVYALAKESPNVE 177
Query: 189 IVYQKKVAHYELP-EQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYD 247
I+ + ++ LP + N+ +++ E G + C LL+G DGA S VR MNV + +YD
Sbjct: 178 ILNKARIQCVRLPRDSNSNHSELQLEDGRNFSCDLLIGADGANSVVRKEMNVDVFSLNYD 237
Query: 248 QKGIVATVKISTSP-PNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGE 306
+ G+VAT+++ N AWQRF P+G VALLPL+D SSLVW+TT E AK L +P
Sbjct: 238 RMGLVATLELGEDACDNSVAWQRFLPNGPVALLPLTDRLSSLVWSTTNEQAKMLQALPPT 297
Query: 307 SFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQV-VPPRVMSVEEKSRAAF 365
FVDALN F + +++A K + F + QV PPRV V +KSRA F
Sbjct: 298 EFVDALNEAFCRQYP---RVELADKAVQALNSLFGHNGSQHQVQYPPRVCGVLDKSRATF 354
Query: 366 PLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHP 425
PLGF H+ Y+ G AL+GD+AHR+HPLAGQGVNLGF D+ LV+ A G+ +G
Sbjct: 355 PLGFLHASSYVCNGAALVGDAAHRVHPLAGQGVNLGFSDVRYLVESLAAGAYAGFKLGDK 414
Query: 426 ESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIF 485
+ L KYE +N+P+ML + ++ +Y + +PV +L +LG QL + P+K++ F
Sbjct: 415 QHLIKYERKCLAKNVPIMLGVHGLHTLYATQFSPVVLLRSLGLQLTQNLPPVKNL----F 470
Query: 486 MRTSM 490
MR +M
Sbjct: 471 MRGAM 475
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 505 SLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKXXXXXXXXXXXXXXX 564
S + +D++I GGG++GTTLA A+A+N TL D +L++E PE
Sbjct: 43 STSTEHFDIIIGGGGLVGTTLAAALAKNSTLADKKVLLLEGAPEFRGFNPTGPYQNRVSA 102
Query: 565 XXXXXXKQLFETIGAWDHIESTRTCTVDNMK 595
+LF++I AW HIES R V M+
Sbjct: 103 INHNSI-ELFKSIDAWKHIESARYKPVKQMQ 132
>FB|FBgn0039691 [details] [associations]
symbol:IntS11 "Integrator 11" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0034472 "snRNA
3'-end processing" evidence=IDA] [GO:0016180 "snRNA processing"
evidence=ISS] [GO:0032039 "integrator complex" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0006378 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
GO:GO:0034472 EMBL:AY061097 RefSeq:NP_651721.1 UniGene:Dm.3722
SMR:Q9VAH9 STRING:Q9VAH9 EnsemblMetazoa:FBtr0085476 GeneID:43506
KEGG:dme:Dmel_CG1972 UCSC:CG1972-RA CTD:43506 FlyBase:FBgn0039691
InParanoid:Q9VAH9 OrthoDB:EOG47D7X3 GenomeRNAi:43506 NextBio:834295
Uniprot:Q9VAH9
Length = 597
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 98/125 (78%), Positives = 116/125 (92%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M +IK+TPLGAGQDVGRSC+L+SMGGKNIMLDCGMHMGY+D+R+FPDF +I P+GP+T
Sbjct: 1 MPDIKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSH 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
IDC+IISHFHLDHCGALPY +E+ GY GPIYMTHPTKAIAPILLED RK++VE+KG+SNF
Sbjct: 61 IDCVIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 120
Query: 121 FTSQM 125
FT+QM
Sbjct: 121 FTTQM 125
>UNIPROTKB|F1NV30 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
IPI:IPI00571913 EMBL:AADN02040858 Ensembl:ENSGALT00000002586
Uniprot:F1NV30
Length = 600
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 100/125 (80%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EIKVTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMGY+DDR+FPDF +I G +TD
Sbjct: 1 MPEIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPTKAI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>UNIPROTKB|Q5ZIH0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB EMBL:AJ720814 IPI:IPI00571913
RefSeq:NP_001012854.1 UniGene:Gga.13403 ProteinModelPortal:Q5ZIH0
STRING:Q5ZIH0 GeneID:419418 KEGG:gga:419418 CTD:54973
InParanoid:Q5ZIH0 NextBio:20822477 Uniprot:Q5ZIH0
Length = 600
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 100/125 (80%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EIKVTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMGY+DDR+FPDF +I G +TD
Sbjct: 1 MPEIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPTKAI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>MGI|MGI:1919207 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 MGI:MGI:1919207 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB CTD:54973 EMBL:AK010425
EMBL:AK090206 EMBL:AK150436 EMBL:AK152740 EMBL:AK167607
EMBL:AK172533 EMBL:BC008240 EMBL:BC011155 IPI:IPI00467084
RefSeq:NP_082296.1 UniGene:Mm.259270 UniGene:Mm.475640
ProteinModelPortal:Q9CWS4 SMR:Q9CWS4 STRING:Q9CWS4
PhosphoSite:Q9CWS4 PaxDb:Q9CWS4 PRIDE:Q9CWS4
Ensembl:ENSMUST00000030901 GeneID:71957 KEGG:mmu:71957
InParanoid:Q9CWS4 NextBio:335052 Bgee:Q9CWS4 Genevestigator:Q9CWS4
GermOnline:ENSMUSG00000029034 Uniprot:Q9CWS4
Length = 600
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 98/125 (78%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMGY+DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>RGD|1306841 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 RGD:1306841 GO:GO:0005634 GO:GO:0005737
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000231294 KO:K13148
OMA:MAVEYMS GeneTree:ENSGT00700000104485 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:BC105303 IPI:IPI00365477
RefSeq:NP_001029064.1 UniGene:Rn.98615 ProteinModelPortal:Q3MHC2
STRING:Q3MHC2 Ensembl:ENSRNOT00000026725 GeneID:298688
KEGG:rno:298688 InParanoid:Q3MHC2 NextBio:644186
Genevestigator:Q3MHC2 GermOnline:ENSRNOG00000019712 Uniprot:Q3MHC2
Length = 600
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 98/125 (78%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMGY+DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>ZFIN|ZDB-GENE-050522-13 [details] [associations]
symbol:cpsf3l "cleavage and polyadenylation specific
factor 3-like" species:7955 "Danio rerio" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
ZFIN:ZDB-GENE-050522-13 GO:GO:0016787 GO:GO:0043484
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS GeneTree:ENSGT00700000104485 EMBL:CABZ01054885
EMBL:CR846089 IPI:IPI00865509 Ensembl:ENSDART00000102902
Uniprot:E7EXW1
Length = 601
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 99/125 (79%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M +IKVTPLGAGQDVGRSCILVS+GGKNIMLDCGMHMG++DDR+FPDF +I G +T+
Sbjct: 1 MPDIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPY +EM GY GPIYMTHPTKAI PILLEDFRKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>UNIPROTKB|C9J979 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 InterPro:IPR022712 Pfam:PF10996 HOGENOM:HOG000231294
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00514808
ProteinModelPortal:C9J979 SMR:C9J979 STRING:C9J979
Ensembl:ENST00000434694 ArrayExpress:C9J979 Bgee:C9J979
Uniprot:C9J979
Length = 344
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 97/125 (77%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>UNIPROTKB|E9PNS4 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00984775
ProteinModelPortal:E9PNS4 SMR:E9PNS4 Ensembl:ENST00000528879
ArrayExpress:E9PNS4 Bgee:E9PNS4 Uniprot:E9PNS4
Length = 278
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 97/125 (77%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>UNIPROTKB|Q5TA45 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
EMBL:AL139287 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:AL136813 EMBL:AK000549
EMBL:AK021939 EMBL:AK023356 EMBL:AK297350 EMBL:CR533557
EMBL:BC000675 EMBL:BC007978 EMBL:BC013904 EMBL:BK005728
EMBL:BK005673 IPI:IPI00063404 IPI:IPI00306882 IPI:IPI00514973
RefSeq:NP_001243392.1 RefSeq:NP_060341.2 UniGene:Hs.6449
ProteinModelPortal:Q5TA45 SMR:Q5TA45 IntAct:Q5TA45
MINT:MINT-1482228 STRING:Q5TA45 PhosphoSite:Q5TA45 DMDM:118572557
PaxDb:Q5TA45 PRIDE:Q5TA45 DNASU:54973 Ensembl:ENST00000419704
Ensembl:ENST00000435064 Ensembl:ENST00000450926
Ensembl:ENST00000545578 GeneID:54973 KEGG:hsa:54973 UCSC:uc001aee.1
UCSC:uc001aeh.1 UCSC:uc009vjz.1 GeneCards:GC01M001236
HGNC:HGNC:26052 HPA:HPA028379 HPA:HPA029025 MIM:611354
neXtProt:NX_Q5TA45 PharmGKB:PA142672080 InParanoid:Q5TA45
PhylomeDB:Q5TA45 ChiTaRS:CPSF3L GenomeRNAi:54973 NextBio:58222
ArrayExpress:Q5TA45 Bgee:Q5TA45 Genevestigator:Q5TA45
GermOnline:ENSG00000127054 Uniprot:Q5TA45
Length = 600
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 97/125 (77%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>UNIPROTKB|E2QY53 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:AAEX03003844 RefSeq:XP_003639102.1 Ensembl:ENSCAFT00000030626
GeneID:100855777 KEGG:cfa:100855777 Uniprot:E2QY53
Length = 600
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 97/125 (77%), Positives = 114/125 (91%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>UNIPROTKB|F1RJE8 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:FP102596 RefSeq:XP_003127541.3 Ensembl:ENSSSCT00000003708
GeneID:100523908 KEGG:ssc:100523908 Uniprot:F1RJE8
Length = 599
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 97/125 (77%), Positives = 113/125 (90%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+GGKN+MLDCGMHMG+ DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMT PT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>UNIPROTKB|E9PIL7 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 GO:GO:0016787 EMBL:AL139287
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00977321
ProteinModelPortal:E9PIL7 SMR:E9PIL7 Ensembl:ENST00000534345
ArrayExpress:E9PIL7 Bgee:E9PIL7 Uniprot:E9PIL7
Length = 140
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 97/126 (76%), Positives = 114/126 (90%)
Query: 1 MSEIKVTPL-GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTD 59
M EI+VTPL GAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLVGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTD 60
Query: 60 MIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSN 119
+DC+IISHFHLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++N
Sbjct: 61 FLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEAN 120
Query: 120 FFTSQM 125
FFTSQM
Sbjct: 121 FFTSQM 126
>UNIPROTKB|Q2YDM2 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 EMBL:BC110155 IPI:IPI00725178
UniGene:Bt.4894 ProteinModelPortal:Q2YDM2 STRING:Q2YDM2
PRIDE:Q2YDM2 HOVERGEN:HBG080215 InParanoid:Q2YDM2 OrthoDB:EOG4GXFMB
Uniprot:Q2YDM2
Length = 599
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 95/125 (76%), Positives = 111/125 (88%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMG+ DDR+FPDF + G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMT PT+AI PILLED+RKI+V+KKG++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQM 125
FTSQM
Sbjct: 121 FTSQM 125
>UNIPROTKB|E1B7Q9 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:DAAA02043243 IPI:IPI00971575 Ensembl:ENSBTAT00000010020
Uniprot:E1B7Q9
Length = 598
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 95/125 (76%), Positives = 111/125 (88%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
M EI+VTPLGAGQDVGRSCILVS+ GKN+MLDCGMHMG+ DDR+FPDF +I G +TD
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDF 60
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+DC+IISHFHLDHCGALPYF+EM GY GPIYMT PT+AI PILLED+RKI+V+K G++NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDK-GEANF 119
Query: 121 FTSQM 125
FTSQM
Sbjct: 120 FTSQM 124
>DICTYBASE|DDB_G0278189 [details] [associations]
symbol:ints11 "integrator complex subunit 11"
species:44689 "Dictyostelium discoideum" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0278189 Pfam:PF07521 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 RefSeq:XP_642189.1
ProteinModelPortal:Q54YL3 PRIDE:Q54YL3 EnsemblProtists:DDB0234100
GeneID:8621396 KEGG:ddi:DDB_G0278189 OMA:RTIANET
ProtClustDB:CLSZ2729107 Uniprot:Q54YL3
Length = 744
Score = 511 (184.9 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 90/122 (73%), Positives = 107/122 (87%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
IKV PLGAGQDVGRSC++V++G KNIM DCGMHMG +D R+FPDF +I+ G T +IDC
Sbjct: 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDC 62
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS 123
+II+HFHLDHCGALP+FTEM GY GPIYMT PTKAI PILLED+RKI+VEKKG++NFFT+
Sbjct: 63 VIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFTA 122
Query: 124 QM 125
QM
Sbjct: 123 QM 124
Score = 42 (19.8 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 125 MNILKIQILKYVMIKGTSKVWGHSS-DDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLN 183
+N+LK QIL Y + + ++ ++L N +N + S + D+ + T +N
Sbjct: 469 LNLLKRQILDYSYQYNNNNLNNFNNFNNLNNLNNNNNNNNNNSLKLI-DIKNNTSTLFIN 527
Query: 184 TLNIDIVYQKKVAHYELPEQPLNNVKIKFES 214
N + Q+ V E E+ +N I+ ES
Sbjct: 528 NNNNNKKKQQSVVVVEESEENQDNNLIEEES 558
>UNIPROTKB|E9PI75 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI01011963
ProteinModelPortal:E9PI75 SMR:E9PI75 Ensembl:ENST00000527719
ArrayExpress:E9PI75 Bgee:E9PI75 Uniprot:E9PI75
Length = 209
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 90/116 (77%), Positives = 106/116 (91%)
Query: 10 GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHF 69
GAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD +DC+IISHF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 70 HLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQM 125
HLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NFFTSQM
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQM 131
>UNIPROTKB|E9PIG1 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00981641
ProteinModelPortal:E9PIG1 SMR:E9PIG1 Ensembl:ENST00000530031
ArrayExpress:E9PIG1 Bgee:E9PIG1 Uniprot:E9PIG1
Length = 249
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 90/116 (77%), Positives = 106/116 (91%)
Query: 10 GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHF 69
GAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD +DC+IISHF
Sbjct: 57 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 116
Query: 70 HLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQM 125
HLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NFFTSQM
Sbjct: 117 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQM 172
>UNIPROTKB|G3V1S5 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:AL139287 EMBL:CH471183 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 OMA:MAVEYMS
CTD:54973 UniGene:Hs.6449 GeneID:54973 KEGG:hsa:54973
HGNC:HGNC:26052 ChiTaRS:CPSF3L GenomeRNAi:54973
RefSeq:NP_001243385.1 ProteinModelPortal:G3V1S5 SMR:G3V1S5
Ensembl:ENST00000540437 ArrayExpress:G3V1S5 Bgee:G3V1S5
Uniprot:G3V1S5
Length = 606
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 90/116 (77%), Positives = 106/116 (91%)
Query: 10 GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHF 69
GAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD +DC+IISHF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 70 HLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQM 125
HLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+RKI+V+KKG++NFFTSQM
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQM 131
>WB|WBGene00008642 [details] [associations]
symbol:F10B5.8 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0009792 EMBL:Z48334 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 PIR:T20694 RefSeq:NP_495706.2
ProteinModelPortal:Q9U3K2 SMR:Q9U3K2 STRING:Q9U3K2 PaxDb:Q9U3K2
EnsemblMetazoa:F10B5.8 GeneID:174310 KEGG:cel:CELE_F10B5.8
UCSC:F10B5.8 CTD:174310 WormBase:F10B5.8 InParanoid:Q9U3K2
NextBio:883468 Uniprot:Q9U3K2
Length = 608
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 85/121 (70%), Positives = 106/121 (87%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
EIK+ PLGAGQDVGRSCIL+++GGKNIM+DCGMHMGY DDR+FPDF +I G +TD +D
Sbjct: 7 EIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 66
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
C+IISHFHLDHCG+LP+ +E+ GY GPIYMT+PTKAI P+LLED+RK+ + KG++NFFT
Sbjct: 67 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFT 126
Query: 123 S 123
S
Sbjct: 127 S 127
>DICTYBASE|DDB_G0291440 [details] [associations]
symbol:coq6 "monooxygenase" species:44689
"Dictyostelium discoideum" [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0016709 "oxidoreductase activity, acting
on paired donors, with incorporation or reduction of molecular
oxygen, NAD(P)H as one donor, and incorporation of one atom of
oxygen" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0006744 "ubiquinone biosynthetic process" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0004497
"monooxygenase activity" evidence=IEA] InterPro:IPR003042
InterPro:IPR010971 PRINTS:PR00420 UniPathway:UPA00232
InterPro:IPR002938 dictyBase:DDB_G0291440 Pfam:PF01494
GO:GO:0005794 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0050660 eggNOG:COG0654 GO:GO:0006744 GO:GO:0016709 KO:K06126
TIGRFAMs:TIGR01988 OMA:LTFWDYG RefSeq:XP_635209.1
ProteinModelPortal:Q54EN1 STRING:Q54EN1 EnsemblProtists:DDB0231594
GeneID:8628154 KEGG:ddi:DDB_G0291440 Uniprot:Q54EN1
Length = 495
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 123/419 (29%), Positives = 218/419 (52%)
Query: 96 TKAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQILKYVMIKGTSKVWG-HSSD-DLL 153
+ AI I F ++E N + + + ++ V + TS G H D D++
Sbjct: 83 SNAIPEIRTISFNNQTIELFKSINVWDTIKSTKRVNPFNQVRVWDTSGFEGIHFQDNDII 142
Query: 154 EFNKAHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHY-ELPEQPLNNVKI- 210
+ N + YI+EN+++ ++ K+ NI++ Q V + E+ + I
Sbjct: 143 DDG---NNTTAMGYIIENNIVTSSLLSKVKQFENIELFEQLSVKSMNDYNEETIRTTSIL 199
Query: 211 ---KFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKI---------- 257
+ + + KL++G DG S ++ + V Y+QK +V T+K+
Sbjct: 200 PSVTLSNDQQLHAKLIIGADGGNSILKKQLQVPSIGRVYNQKAVVCTLKLGIKQDNNNNS 259
Query: 258 --STSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSE 315
+ + N T +QRF P+G +ALLPL++ +++++W+T +A+ LL++ ESF++ +
Sbjct: 260 SNNNNNNNNTLFQRFLPTGPIALLPLANGYANIIWSTNLMHAQYLLELDDESFLEQVKDS 319
Query: 316 FNK-PAELNESI-QVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSV 373
F K P+ N S ++A+ + L LS GNE +PP + + K RA+FPL H+
Sbjct: 320 FLKSPSTSNSSFFEIASNLFN--LNPKGLS-GNEIYLPP-IEGLVSK-RASFPLRIDHTF 374
Query: 374 RYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYES 433
Y P +GD++H +HP+AGQGVNLG D+ L + +SV +GY IG L ++E
Sbjct: 375 NYTLPRVCFIGDASHLVHPMAGQGVNLGMADVKTLSSIIEQSVQSGYDIGDAMMLKRFEE 434
Query: 434 IRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRTSMEK 492
IR+ ENL ++LSID ++ ++ ++ V L N G L+N + P+K+++ + S+ K
Sbjct: 435 IRKPENLKMLLSIDTLFNLFTNNSIFVTGLRNFGMSLLNNISPLKNLIIGVSKGESILK 493
Score = 130 (50.8 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP-EKXXXXXXXXXXXXXXXXXXXX 569
YD++I GGG++G+T+AC+I N T K L + +IES +
Sbjct: 38 YDIIIIGGGLVGSTMACSIGNNNTTKHLKVALIESSKIQTVEQSISNAIPEIRTISFNNQ 97
Query: 570 XKQLFETIGAWDHIESTR 587
+LF++I WD I+ST+
Sbjct: 98 TIELFKSINVWDTIKSTK 115
>UNIPROTKB|E9PQF0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 GO:GO:0016787 EMBL:AL139287
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00982774
ProteinModelPortal:E9PQF0 SMR:E9PQF0 Ensembl:ENST00000498476
ArrayExpress:E9PQF0 Bgee:E9PQF0 Uniprot:E9PQF0
Length = 167
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 76/98 (77%), Positives = 88/98 (89%)
Query: 10 GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHF 69
GAGQDVGRSCILVS+ GKN+MLDCGMHMG++DDR+FPDF +I G +TD +DC+IISHF
Sbjct: 70 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 129
Query: 70 HLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDF 107
HLDHCGALPYF+EM GY GPIYMTHPT+AI PILLED+
Sbjct: 130 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY 167
>TAIR|locus:2093731 [details] [associations]
symbol:AT3G24200 "AT3G24200" species:3702 "Arabidopsis
thaliana" [GO:0004497 "monooxygenase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0006744 "ubiquinone
biosynthetic process" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0016709 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
InterPro:IPR000689 InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
InterPro:IPR002938 Pfam:PF01494 EMBL:CP002686 GO:GO:0050660
GO:GO:0006744 GO:GO:0016709 KO:K06126 TIGRFAMs:TIGR01989
TIGRFAMs:TIGR01988 OMA:LTFWDYG IPI:IPI00656909
RefSeq:NP_001030758.1 UniGene:At.37575 UniGene:At.5560
ProteinModelPortal:F4J6I6 SMR:F4J6I6 PRIDE:F4J6I6
EnsemblPlants:AT3G24200.2 GeneID:822006 KEGG:ath:AT3G24200
PhylomeDB:F4J6I6 Uniprot:F4J6I6
Length = 507
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 107/358 (29%), Positives = 177/358 (49%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNID-IVYQKKVAHYE-L 200
+VW ++ +N +QD + +VEN ++ + + ++ VY ++ + L
Sbjct: 140 QVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSCVQESDLQKTVYPARLNAMDML 199
Query: 201 PEQPLNNV----------------KIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNW 244
P L + K++ G + KL++G DG++S+VR ++ + W
Sbjct: 200 PSSSLTGLGEVPSTTDLFMRGRLAKLELSDGNRVYAKLVVGADGSKSRVRELAGIKTTGW 259
Query: 245 SYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMP 304
+Y Q I+ TV+ + N TAWQRF P+G +ALLP+ D+FS++VW P+ A M
Sbjct: 260 NYSQNAIICTVEHTAE--NYTAWQRFLPNGPIALLPIGDKFSNIVWTMDPKEASDRKLMN 317
Query: 305 GESFV----DALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEK 360
+ F+ DAL+S + E S + T + +S PP+V+ + +
Sbjct: 318 EDDFIKAVNDALDSGYGPNPETTSSRDSLSWLTGDA----TISAKERFETPPKVVKLSSE 373
Query: 361 SRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGY 420
R FPL H+ Y+ AL+GDSAH +HPLAGQGVNLGF D L + AE ++ G
Sbjct: 374 -RMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFADACALSKAIAEGIALGT 432
Query: 421 PIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
IG L +YE+ R+ N+ +M +D + ++Y P+ L F + + P+K
Sbjct: 433 DIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGPLNALRAAAFHGAHYISPLK 490
>SGD|S000003487 [details] [associations]
symbol:COQ6 "Putative flavin-dependent monooxygenase"
species:4932 "Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0004499 "N,N-dimethylaniline monooxygenase
activity" evidence=ISA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0006744 "ubiquinone biosynthetic process"
evidence=IEA;IMP] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016709 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0005743 "mitochondrial inner membrane" evidence=IEA;IDA]
[GO:0004497 "monooxygenase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] InterPro:IPR000689 InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 UniPathway:UPA00232 InterPro:IPR002938
SGD:S000003487 Pfam:PF01494 EMBL:BK006941 GO:GO:0005743
GO:GO:0050660 eggNOG:COG0654 EMBL:X99228 GO:GO:0006744
GeneTree:ENSGT00390000015152 HOGENOM:HOG000255772 KO:K06126
TIGRFAMs:TIGR01989 TIGRFAMs:TIGR01988 OrthoDB:EOG496316
EMBL:AF003698 EMBL:Z73040 EMBL:X80690 PIR:S64587 RefSeq:NP_011771.1
ProteinModelPortal:P53318 SMR:P53318 IntAct:P53318 MINT:MINT-619446
STRING:P53318 PaxDb:P53318 EnsemblFungi:YGR255C GeneID:853170
KEGG:sce:YGR255C CYGD:YGR255c OMA:MMQSVDI
BioCyc:MetaCyc:MONOMER-16019 NextBio:973291 Genevestigator:P53318
GermOnline:YGR255C GO:GO:0004499 Uniprot:P53318
Length = 479
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 97/312 (31%), Positives = 165/312 (52%)
Query: 187 IDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSY 246
ID + H + P PL+ + +GE + +LL+G DG S R + W Y
Sbjct: 162 IDNTKVVNIKHSD-PNDPLSWPLVTLSNGEVYKTRLLVGADGFNSPTRRFSQIPSRGWMY 220
Query: 247 DQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGE 306
+ G+VA++K+ P WQRF P+G +A LP+ + ++LVW+++ ++ LL +P E
Sbjct: 221 NAYGVVASMKLEYPPFKLRGWQRFLPTGPIAHLPMPENNATLVWSSSERLSRLLLSLPPE 280
Query: 307 SFVDALNSEFN-KPAELN---ESIQVATKFTHNVLEFFNLSTGN-----------EQVVP 351
SF +N+ F + A++N +++ + T ++E T +++ P
Sbjct: 281 SFTALINAAFVLEDADMNYYYRTLEDGSMDTDKLIEDIKFRTEEIYATLKDESDIDEIYP 340
Query: 352 PRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQL 411
PRV+S+ +K+RA FPL H+ RY AL+GD+AH HPLAGQG+N+G D+ LV
Sbjct: 341 PRVVSIIDKTRARFPLKLTHADRYCTDRVALVGDAAHTTHPLAGQGLNMGQTDVHGLVYA 400
Query: 412 SAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLV 471
+++ G IG SL + + R N ++ D ++++Y ++ PV L G L
Sbjct: 401 LEKAMERGLDIGSSLSLEPFWAERYPSNNVLLGMADKLFKLYHTNFPPVVALRTFGLNLT 460
Query: 472 NAVRPIKSILCD 483
N + P+K+++ D
Sbjct: 461 NKIGPVKNMIID 472
>CGD|CAL0001438 [details] [associations]
symbol:orf19.3058 species:5476 "Candida albicans" [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0006744
"ubiquinone biosynthetic process" evidence=IEA] InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 InterPro:IPR002938 CGD:CAL0001438 Pfam:PF01494
EMBL:AACQ01000017 EMBL:AACQ01000015 GO:GO:0050660 eggNOG:COG0654
GO:GO:0006744 GO:GO:0016709 HOGENOM:HOG000255772 KO:K06126
TIGRFAMs:TIGR01988 RefSeq:XP_721285.1 RefSeq:XP_721556.1
ProteinModelPortal:Q5AHZ4 STRING:Q5AHZ4 GeneID:3636878
GeneID:3637100 KEGG:cal:CaO19.10576 KEGG:cal:CaO19.3058
Uniprot:Q5AHZ4
Length = 480
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 104/337 (30%), Positives = 179/337 (53%)
Query: 157 KAHNYQDRISYIVENDLIIDAVTK---KLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFE 213
K + QD+ + I +N +++ V L+ N+ + V+ +L + P+ +K E
Sbjct: 143 KIESLQDKSTTIKDNTKVVEIVNPIEPDLDNHNLTEI-DTNVSDPKL-DWPI----VKLE 196
Query: 214 SGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPS 273
+GE+I+ +LL+G DG S VR +++ W Y+ G+VATVK+ WQRF +
Sbjct: 197 NGETIQTRLLVGADGYNSPVRKYAHIESRGWQYNTFGVVATVKLQYEDFRAVGWQRFLTT 256
Query: 274 GTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFN-KPAELNESIQVATKF 332
G +A+LPLS++ +++VW++TPE A LL++ + F + + + +LN V +
Sbjct: 257 GPLAILPLSEDNATIVWSSTPELADLLLKVNEKIFPHLVTAAMVLEEVDLNYIYSVLQED 316
Query: 333 THN--VLEF--FNLSTGN----EQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLG 384
++ VL+ + LS N E+ P V+ V SRA FPL H+ Y+ P AL+G
Sbjct: 317 PNDFSVLKDIEWRLSKFNPEELEERYPLPVVDVLSGSRARFPLKMSHADTYVAPRVALVG 376
Query: 385 DSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVML 444
D+AH IHPLAGQG+N+G D+A LV+ + + G IG L Y + N ++
Sbjct: 377 DAAHTIHPLAGQGLNMGQSDVAALVEALEKGIDRGMDIGSTLVLENYVANAWPSNHALLG 436
Query: 445 SIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
D +++++ + P+ G + +N+ IK ++
Sbjct: 437 ICDKLHKIFSTDFYPLVWARGFGMKSINSFGAIKELM 473
>POMBASE|SPBC146.12 [details] [associations]
symbol:coq6 "monooxygenase Coq6 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=ISS] [GO:0006744 "ubiquinone biosynthetic process"
evidence=ISS] [GO:0016709 "oxidoreductase activity, acting on
paired donors, with incorporation or reduction of molecular oxygen,
NAD(P)H as one donor, and incorporation of one atom of oxygen"
evidence=ISS] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR000689 InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 UniPathway:UPA00232 InterPro:IPR002938
PomBase:SPBC146.12 Pfam:PF01494 GO:GO:0005743 GO:GO:0050660
eggNOG:COG0654 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006744 GO:GO:0016709 HOGENOM:HOG000255772 TIGRFAMs:TIGR01989
TIGRFAMs:TIGR01988 PIR:T39426 RefSeq:NP_595401.2
ProteinModelPortal:Q9Y7Z9 STRING:Q9Y7Z9 EnsemblFungi:SPBC146.12.1
GeneID:2539672 OrthoDB:EOG496316 NextBio:20800826 Uniprot:Q9Y7Z9
Length = 479
Score = 384 (140.2 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 98/322 (30%), Positives = 152/322 (47%)
Query: 165 ISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLL 224
+ Y + N IID + + N++ + + E + I + + KLL+
Sbjct: 152 LQYALLNS-IIDKMNNNIKKPNLEFLMPCTITKLSKGEN-IYRTHIHTTTHGELTTKLLI 209
Query: 225 GTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDE 284
G DG S VR N+ W+Y +V T+KI A+QRF P+G +A LPL D
Sbjct: 210 GADGRNSIVRKYANISMPGWNYLTHAVVGTLKIDPLKGPAVAFQRFLPTGPLAYLPLPDN 269
Query: 285 FSSLVWATTPENAKALLQMPGESFVDALNSEFNKP-AELNESIQVATKFTHNVLEFFN-- 341
++ VW+T P A LL++P E+FV LN+ F +L+ Q+ V E +
Sbjct: 270 NATFVWSTRPHIASKLLRLPEETFVKFLNASFRLDYPDLSYLYQMDFSEPSKVNEQLDWR 329
Query: 342 --LSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVN 399
+ + VPP + + SRAAFPL H Y+ G AL GD+AH HPLAGQG+N
Sbjct: 330 LQVKRNSNMQVPPVITEIVSGSRAAFPLRLAHVDEYVKEGIALCGDAAHNTHPLAGQGLN 389
Query: 400 LGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTP 459
G D+ L+ + ++ +G IG SL Y R +N + +D +++Y
Sbjct: 390 TGIQDVESLISALSFAIKHGQDIGSVFSLQPYFRDRYFKNHVYLGVVDKFHKLYAMENPV 449
Query: 460 VKILGNLGFQLVNAVRPIKSIL 481
V + LG L + +K+ +
Sbjct: 450 VTSVRTLGLSLFDRSASLKNFI 471
>TAIR|locus:2065368 [details] [associations]
symbol:CPSF73-II "AT2G01730" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0010197 "polar nucleus
fusion" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0090305 EMBL:AC006069
GO:GO:0004518 GO:GO:0010197 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 EMBL:AY168923
EMBL:AK221561 IPI:IPI00536069 PIR:D84428 RefSeq:NP_178282.2
UniGene:At.42473 ProteinModelPortal:Q8GUU3 SMR:Q8GUU3 IntAct:Q8GUU3
STRING:Q8GUU3 PaxDb:Q8GUU3 PRIDE:Q8GUU3 EnsemblPlants:AT2G01730.1
GeneID:814702 KEGG:ath:AT2G01730 TAIR:At2g01730
HOGENOM:HOG000231294 InParanoid:Q56XW2 KO:K13148 OMA:MAVEYMS
Genevestigator:Q8GUU3 Uniprot:Q8GUU3
Length = 613
Score = 393 (143.4 bits), Expect = 1.6e-34, P = 1.6e-34
Identities = 62/115 (53%), Positives = 92/115 (80%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISH 68
LGAGQ++G+SC++V++ GK IM DCGMHMG D ++P+F I+ G + I C+II+H
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 69 FHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS 123
FH+DH GALPYFTE+ GY GPIYM++PTKA++P++LED+R++ V+++G+ FT+
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTT 122
>UNIPROTKB|Q9KTD9 [details] [associations]
symbol:VC_0963 "VisC-related protein" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003042
InterPro:IPR010971 PRINTS:PR00420 InterPro:IPR002938 Pfam:PF01494
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006744
GO:GO:0016709 TIGRFAMs:TIGR01988 KO:K03184 OMA:RYRDNQL PIR:F82257
RefSeq:NP_230610.1 ProteinModelPortal:Q9KTD9 DNASU:2614216
GeneID:2614216 KEGG:vch:VC0963 PATRIC:20081026 ProtClustDB:PRK08849
Uniprot:Q9KTD9
Length = 397
Score = 227 (85.0 bits), Expect = 8.5e-32, Sum P(2) = 8.5e-32
Identities = 48/132 (36%), Positives = 74/132 (56%)
Query: 348 QVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIAC 407
Q P + +++ AFPL H+ +Y+ C L+GD+AH I+PLAGQGVNLGF D+A
Sbjct: 261 QYFPAELGNIKVLQHGAFPLTRRHAQQYVKNRCILIGDAAHTINPLAGQGVNLGFKDVAV 320
Query: 408 LVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLG 467
L+ + E N S +YE R+ +NL + +DL Y+ + +S TPV+ + N+
Sbjct: 321 LLAQTQEQALN------QASFERYERCRRPDNLLMQTGMDLFYKTFSNSFTPVRFVRNVA 374
Query: 468 FQLVNAVRPIKS 479
L P+K+
Sbjct: 375 LALAERSGPLKT 386
Score = 191 (72.3 bits), Expect = 8.5e-32, Sum P(2) = 8.5e-32
Identities = 49/166 (29%), Positives = 86/166 (51%)
Query: 164 RISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKL 222
++ Y+VEN +I A+ ++ + ++ +++A + + ++ +SG IEC
Sbjct: 114 QLGYMVENRVIQLALWQQFAAYPQLTLMCPEQLAQLNVSAE---GCRVTLQSGAEIECDW 170
Query: 223 LLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLS 282
++G DGA SQVRN + + + W Y Q ++ V+ + T WQ+F P+G + LPL
Sbjct: 171 VIGADGANSQVRNLVRIGVTAWDYRQHCMLINVQ-TEQIQQETTWQQFFPTGPRSYLPLG 229
Query: 283 DEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQV 328
+SLVW TP+ + L + E + F PAEL +I+V
Sbjct: 230 GNQASLVWYDTPQRIRKLSGLNPEQLRSEILQYF--PAELG-NIKV 272
>TIGR_CMR|VC_0963 [details] [associations]
symbol:VC_0963 "visC protein, putative" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003042 InterPro:IPR010971 PRINTS:PR00420
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006744 GO:GO:0016709
TIGRFAMs:TIGR01988 KO:K03184 OMA:RYRDNQL PIR:F82257
RefSeq:NP_230610.1 ProteinModelPortal:Q9KTD9 DNASU:2614216
GeneID:2614216 KEGG:vch:VC0963 PATRIC:20081026 ProtClustDB:PRK08849
Uniprot:Q9KTD9
Length = 397
Score = 227 (85.0 bits), Expect = 8.5e-32, Sum P(2) = 8.5e-32
Identities = 48/132 (36%), Positives = 74/132 (56%)
Query: 348 QVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIAC 407
Q P + +++ AFPL H+ +Y+ C L+GD+AH I+PLAGQGVNLGF D+A
Sbjct: 261 QYFPAELGNIKVLQHGAFPLTRRHAQQYVKNRCILIGDAAHTINPLAGQGVNLGFKDVAV 320
Query: 408 LVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLG 467
L+ + E N S +YE R+ +NL + +DL Y+ + +S TPV+ + N+
Sbjct: 321 LLAQTQEQALN------QASFERYERCRRPDNLLMQTGMDLFYKTFSNSFTPVRFVRNVA 374
Query: 468 FQLVNAVRPIKS 479
L P+K+
Sbjct: 375 LALAERSGPLKT 386
Score = 191 (72.3 bits), Expect = 8.5e-32, Sum P(2) = 8.5e-32
Identities = 49/166 (29%), Positives = 86/166 (51%)
Query: 164 RISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKL 222
++ Y+VEN +I A+ ++ + ++ +++A + + ++ +SG IEC
Sbjct: 114 QLGYMVENRVIQLALWQQFAAYPQLTLMCPEQLAQLNVSAE---GCRVTLQSGAEIECDW 170
Query: 223 LLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLS 282
++G DGA SQVRN + + + W Y Q ++ V+ + T WQ+F P+G + LPL
Sbjct: 171 VIGADGANSQVRNLVRIGVTAWDYRQHCMLINVQ-TEQIQQETTWQQFFPTGPRSYLPLG 229
Query: 283 DEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQV 328
+SLVW TP+ + L + E + F PAEL +I+V
Sbjct: 230 GNQASLVWYDTPQRIRKLSGLNPEQLRSEILQYF--PAELG-NIKV 272
>UNIPROTKB|P75728 [details] [associations]
symbol:ubiF species:83333 "Escherichia coli K-12"
[GO:0008682 "2-octoprenyl-3-methyl-6-methoxy-1,4-benzoquinone
hydroxylase activity" evidence=IMP] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0016709 "oxidoreductase
activity, acting on paired donors, with incorporation or reduction
of molecular oxygen, NAD(P)H as one donor, and incorporation of one
atom of oxygen" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0004497 "monooxygenase activity"
evidence=IEA] [GO:0016705 "oxidoreductase activity, acting on
paired donors, with incorporation or reduction of molecular oxygen"
evidence=ISS] [GO:0006744 "ubiquinone biosynthetic process"
evidence=IEA;IMP] InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
UniPathway:UPA00232 InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR eggNOG:COG0654 GO:GO:0006744 EMBL:U82598
GO:GO:0016705 GO:GO:0016709 TIGRFAMs:TIGR01988 PIR:D64801
RefSeq:NP_415195.1 RefSeq:YP_488953.1 ProteinModelPortal:P75728
SMR:P75728 DIP:DIP-11069N IntAct:P75728 PRIDE:P75728
EnsemblBacteria:EBESCT00000001793 EnsemblBacteria:EBESCT00000015553
GeneID:12932237 GeneID:945261 KEGG:ecj:Y75_p0652 KEGG:eco:b0662
PATRIC:32116513 EchoBASE:EB3422 EcoGene:EG13658
HOGENOM:HOG000255771 KO:K03184 OMA:YDSPTRI ProtClustDB:PRK08020
BioCyc:EcoCyc:OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON
BioCyc:ECOL316407:JW0659-MONOMER
BioCyc:MetaCyc:OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON
Genevestigator:P75728 GO:GO:0008682 Uniprot:P75728
Length = 391
Score = 222 (83.2 bits), Expect = 6.3e-31, Sum P(2) = 6.3e-31
Identities = 46/128 (35%), Positives = 71/128 (55%)
Query: 351 PPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQ 410
P R+ V + AFPL H+++Y+ PG AL+GD+AH IHPLAGQGVNLG+ D+ L+
Sbjct: 254 PSRLGYVTPLAAGAFPLTRRHALQYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALID 313
Query: 411 LSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQL 470
+ + S G L +Y+ R +N + +DL Y + ++L P++ + NLG
Sbjct: 314 VLVNARSYGEAWASYPVLKRYQMRRMADNFIMQSGMDLFYAGFSNNLPPLRFMRNLGLMA 373
Query: 471 VNAVRPIK 478
+K
Sbjct: 374 AERAGVLK 381
Score = 188 (71.2 bits), Expect = 6.3e-31, Sum P(2) = 6.3e-31
Identities = 47/141 (33%), Positives = 73/141 (51%)
Query: 165 ISYIVENDLIIDAVTKKLNTL-NIDI-VYQKKVAHYELPEQPLNNVKIKFESGESIECKL 222
+ Y+VEN ++ A+ + L + + V +A + L +++K GE I KL
Sbjct: 105 LGYMVENTVLQQALWQALEAHPKVTLRVPGSLIALHR--HDDLQELELK--GGEVIRAKL 160
Query: 223 LLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLS 282
++G DGA SQVR + W Y Q ++ +V+ P + T WQ+FTP G A LPL
Sbjct: 161 VIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDST-WQQFTPDGPRAFLPLF 219
Query: 283 DEFSSLVWATTPENAKALLQM 303
D ++SLVW +P + L M
Sbjct: 220 DNWASLVWYDSPARIRQLQNM 240
>UNIPROTKB|Q83F72 [details] [associations]
symbol:visC "Monooxygenase" species:227377 "Coxiella
burnetii RSA 493" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660
GO:GO:0006744 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0016709
TIGRFAMs:TIGR01988 OMA:LTFWDYG HOGENOM:HOG000255771
RefSeq:NP_819129.2 ProteinModelPortal:Q83F72 PRIDE:Q83F72
GeneID:1207946 KEGG:cbu:CBU_0076 PATRIC:17928831
ProtClustDB:CLSK913819 BioCyc:CBUR227377:GJ7S-78-MONOMER
Uniprot:Q83F72
Length = 412
Score = 217 (81.4 bits), Expect = 6.6e-29, Sum P(2) = 6.6e-29
Identities = 57/168 (33%), Positives = 90/168 (53%)
Query: 330 TKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHR 389
T+F + F L G R+ + E A PL H+ +YIG AL+GD+AH
Sbjct: 248 TEFNEELNNAFGLRLG-------RIQRLTEPK--AIPLIMRHAKKYIGSRMALIGDAAHT 298
Query: 390 IHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLM 449
IHPLAGQGVNLGF D ACL Q ++ +G+ +L +YE R+ +N +ML+ +
Sbjct: 299 IHPLAGQGVNLGFMDGACLAQCFIDAHQKNQDLGNLRTLRRYERWRKGDNT-IMLAAMRL 357
Query: 450 YRVYRSSLTPVKILG-NLGFQLVNAVRPIKSILCDIFMRTSMEKVTLL 496
++ + P + N+G + + + P+K+ C FM+ +M +V+ L
Sbjct: 358 FKECFGAQFPFMVQARNIGLNITDRLNPVKN--C--FMKIAMGEVSEL 401
Score = 176 (67.0 bits), Expect = 6.6e-29, Sum P(2) = 6.6e-29
Identities = 49/179 (27%), Positives = 86/179 (48%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN-IDIVYQKKVAHYELP 201
KVW + F+ A + IVEN II A+ +K ++ + K P
Sbjct: 87 KVWDGLGGAKITFDSAEVGACALGAIVENREIIRALWQKCQEDPFVEFICPAK------P 140
Query: 202 EQ---PLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKIS 258
+Q ++ V+++ ++ I+ ++G DG S +R M+++ + Y+Q +V VK
Sbjct: 141 KQLFHTMDFVELELDNDRKIQTPCVVGADGGHSWLRQHMSIEINERPYEQSAVVTVVKTE 200
Query: 259 TSPPNRTAWQRFTPSGTVALLPLSD-EFSSLVWATTPENAKALLQMPGESFVDALNSEF 316
+ +T WQ F P +ALLPL+D ++VW+ E A L+ + F + LN+ F
Sbjct: 201 NAH-QQTGWQVFLPKAVLALLPLADPHHCAIVWSVATEKANHLMALDETEFNEELNNAF 258
>TIGR_CMR|CBU_0076 [details] [associations]
symbol:CBU_0076 "visC protein" species:227377 "Coxiella
burnetii RSA 493" [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660
GO:GO:0006744 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0016709
TIGRFAMs:TIGR01988 OMA:LTFWDYG HOGENOM:HOG000255771
RefSeq:NP_819129.2 ProteinModelPortal:Q83F72 PRIDE:Q83F72
GeneID:1207946 KEGG:cbu:CBU_0076 PATRIC:17928831
ProtClustDB:CLSK913819 BioCyc:CBUR227377:GJ7S-78-MONOMER
Uniprot:Q83F72
Length = 412
Score = 217 (81.4 bits), Expect = 6.6e-29, Sum P(2) = 6.6e-29
Identities = 57/168 (33%), Positives = 90/168 (53%)
Query: 330 TKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHR 389
T+F + F L G R+ + E A PL H+ +YIG AL+GD+AH
Sbjct: 248 TEFNEELNNAFGLRLG-------RIQRLTEPK--AIPLIMRHAKKYIGSRMALIGDAAHT 298
Query: 390 IHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLM 449
IHPLAGQGVNLGF D ACL Q ++ +G+ +L +YE R+ +N +ML+ +
Sbjct: 299 IHPLAGQGVNLGFMDGACLAQCFIDAHQKNQDLGNLRTLRRYERWRKGDNT-IMLAAMRL 357
Query: 450 YRVYRSSLTPVKILG-NLGFQLVNAVRPIKSILCDIFMRTSMEKVTLL 496
++ + P + N+G + + + P+K+ C FM+ +M +V+ L
Sbjct: 358 FKECFGAQFPFMVQARNIGLNITDRLNPVKN--C--FMKIAMGEVSEL 401
Score = 176 (67.0 bits), Expect = 6.6e-29, Sum P(2) = 6.6e-29
Identities = 49/179 (27%), Positives = 86/179 (48%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN-IDIVYQKKVAHYELP 201
KVW + F+ A + IVEN II A+ +K ++ + K P
Sbjct: 87 KVWDGLGGAKITFDSAEVGACALGAIVENREIIRALWQKCQEDPFVEFICPAK------P 140
Query: 202 EQ---PLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKIS 258
+Q ++ V+++ ++ I+ ++G DG S +R M+++ + Y+Q +V VK
Sbjct: 141 KQLFHTMDFVELELDNDRKIQTPCVVGADGGHSWLRQHMSIEINERPYEQSAVVTVVKTE 200
Query: 259 TSPPNRTAWQRFTPSGTVALLPLSD-EFSSLVWATTPENAKALLQMPGESFVDALNSEF 316
+ +T WQ F P +ALLPL+D ++VW+ E A L+ + F + LN+ F
Sbjct: 201 NAH-QQTGWQVFLPKAVLALLPLADPHHCAIVWSVATEKANHLMALDETEFNEELNNAF 258
>ASPGD|ASPL0000016806 [details] [associations]
symbol:AN3586 species:162425 "Emericella nidulans"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0016709
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0006744
"ubiquinone biosynthetic process" evidence=IEA] InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660
GO:GO:0006744 EMBL:BN001302 GO:GO:0016709 TIGRFAMs:TIGR01988
EnsemblFungi:CADANIAT00005158 OMA:METRADV Uniprot:C8V4E3
Length = 513
Score = 324 (119.1 bits), Expect = 1.0e-26, P = 1.0e-26
Identities = 84/233 (36%), Positives = 133/233 (57%)
Query: 264 RTAWQRFTPS--GTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPA- 320
RTA+QRF P+ G +ALLPL + ++LVW+TT ENA L + +F+ +N+ F
Sbjct: 276 RTAYQRFLPALGGPIALLPLPNNNATLVWSTTVENAAYLKSLSPGAFIAMVNAAFRLGMP 335
Query: 321 ELNESIQV---ATKFTHNVLEFFNLS--------TGNEQVVPPRVMSVEEKSRAAFPLGF 369
+L +++ ++ N+ E + S T + +PP V V+E S A+FPL F
Sbjct: 336 DLQYMMRMERPSSSSVTNLDEDLHESELTWRLQHTPSPSHLPPMVTGVQEGSVASFPLRF 395
Query: 370 GHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLT 429
H+ YI P AL+GD+AH IHPLAGQG+NLG GD+A L + +V++G IG +L
Sbjct: 396 RHASTYISPRVALVGDAAHVIHPLAGQGLNLGLGDVASLSRTIEYAVTHGMDIGDILTLE 455
Query: 430 KYESIRQRENLPVMLSIDLMYRVYR-SSLTPVKILGNLGFQLVNAVRPIKSIL 481
+Y + R N + + D+++++Y PV +LGF++++ V +K L
Sbjct: 456 RYTAERYATNAKIGGTCDVLHKLYNVPGQGPVAWGRSLGFEIIDRVPFLKGFL 508
Score = 189 (71.6 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 43/107 (40%), Positives = 63/107 (58%)
Query: 218 IECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTS-PP-----NRTAWQRFT 271
I +LL+G DG S VR ++ W Y + GIVAT+ ++ PP RTA+QRF
Sbjct: 224 IAARLLVGADGINSPVRRYADITTDGWDYQRHGIVATLSLADHIPPPFPIGTRTAYQRFL 283
Query: 272 PS--GTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEF 316
P+ G +ALLPL + ++LVW+TT ENA L + +F+ +N+ F
Sbjct: 284 PALGGPIALLPLPNNNATLVWSTTVENAAYLKSLSPGAFIAMVNAAF 330
>TIGR_CMR|SO_0778 [details] [associations]
symbol:SO_0778 "oxidoreductase, FAD-binding, UbiH/Coq6
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008152
"metabolic process" evidence=ISS] [GO:0016491 "oxidoreductase
activity" evidence=ISS] InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 GO:GO:0006744
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0016709
TIGRFAMs:TIGR01988 OMA:LTFWDYG HOGENOM:HOG000255771
RefSeq:NP_716409.1 ProteinModelPortal:Q8EIQ9 DNASU:1168633
GeneID:1168633 KEGG:son:SO_0778 PATRIC:23521229
ProtClustDB:CLSK905935 Uniprot:Q8EIQ9
Length = 407
Score = 185 (70.2 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 47/133 (35%), Positives = 74/133 (55%)
Query: 359 EKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSN 418
E R AFPL ++ + L GD+AH IHPLAGQGVNLGF D A ++++ +E
Sbjct: 269 ESERQAFPLRMRYARHFARHRLVLAGDAAHTIHPLAGQGVNLGFLDAASIIEVISELQQA 328
Query: 419 GYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVK-ILGNLGFQLVNAVRPI 477
G IG L E R+ + + ++ +++ R++ S PVK + +LG LV+ V +
Sbjct: 329 GKDIGDYAELRALERWRKADAMEMIAAMEGFKRLFEGS-NPVKKAIRDLGLNLVDNVAGL 387
Query: 478 KSILCDIFMRTSM 490
K++ FM+ +M
Sbjct: 388 KTV----FMQQAM 396
Score = 183 (69.5 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 53/178 (29%), Positives = 79/178 (44%)
Query: 144 VWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELPE 202
VW + F+ + + + I+END I A+ K+ + NI + +++ E
Sbjct: 84 VWDKDGFGKIAFDASSISEPSLGAIIENDAISYALAKRASEFDNITHIENQRLERIAFGE 143
Query: 203 QP--LNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTS 260
+ L ES+ L++ DGA S VR + + W Y IVAT++ S
Sbjct: 144 REAWLTLANSADAEIESVSAALVIAADGANSWVREQCKIPLTFWDYGHHAIVATIR-SEM 202
Query: 261 PPNRTAWQRFTPSGTVALLPL-SDEFSSLVWATTPENAKALLQMPGESFVDALNSEFN 317
P TA Q F G +A LPL D S+VW+ PE A LL M F L + F+
Sbjct: 203 PHLATARQVFLQDGPLAFLPLYEDNLCSIVWSVPPERATELLAMDKVQFERNLTAAFD 260
>UNIPROTKB|P25535 [details] [associations]
symbol:visC "predicted oxidoreductase, FAD/NAD(P)-binding
domain" species:83333 "Escherichia coli K-12" [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0016709
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0006744
"ubiquinone biosynthetic process" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0004497 "monooxygenase
activity" evidence=IEA] InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
eggNOG:COG0654 GO:GO:0006744 EMBL:U28377 EMBL:D90281 GO:GO:0016709
TIGRFAMs:TIGR01988 OMA:LTFWDYG HOGENOM:HOG000255771 PIR:B65075
RefSeq:NP_417382.1 RefSeq:YP_491107.1 ProteinModelPortal:P25535
SMR:P25535 IntAct:P25535 PRIDE:P25535
EnsemblBacteria:EBESCT00000003454 EnsemblBacteria:EBESCT00000015009
GeneID:12933350 GeneID:947389 KEGG:ecj:Y75_p2838 KEGG:eco:b2906
PATRIC:32121226 EchoBASE:EB1309 EcoGene:EG11333
ProtClustDB:PRK08013 BioCyc:EcoCyc:EG11333-MONOMER
BioCyc:ECOL316407:JW2874-MONOMER Genevestigator:P25535
Uniprot:P25535
Length = 400
Score = 198 (74.8 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 54/178 (30%), Positives = 88/178 (49%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPE 202
+VW S + F+ + +IVEN +I A+ K + + DI +A EL +
Sbjct: 82 EVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWNKAHQSS-DITL---LAPAELQQ 137
Query: 203 QPL--NNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTS 260
N + + G + +L++G DGA S +RN ++ + W Y +VAT++ +
Sbjct: 138 VAWGENETFLTLKDGSMLTARLVIGADGANSWLRNKADIPLTFWDYQHHALVATIR-TEE 196
Query: 261 PPNRTAWQRFTPSGTVALLPLSD-EFSSLVWATTPENAKALLQMPGESFVDALNSEFN 317
P + A Q F G +A LPLSD S+VW+ +PE A+ + Q + F ALN F+
Sbjct: 197 PHDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFD 254
Score = 163 (62.4 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 44/121 (36%), Positives = 65/121 (53%)
Query: 359 EKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSN 418
E +R FPL ++ ++ AL+GD+AH IHPLAGQGVNLGF D A L+
Sbjct: 263 ESARQVFPLTGRYARQFASHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQ 322
Query: 419 GYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVK-ILGNLGFQLVNAVRPI 477
G IG L +YE R + + +ML+ +R S P K +L ++G +L + + +
Sbjct: 323 GKDIGQYIYLRRYERSR-KHSAALMLAGMQGFRDLFSGTNPAKKLLRDIGLKLADTLPGV 381
Query: 478 K 478
K
Sbjct: 382 K 382
>TIGR_CMR|SO_0777 [details] [associations]
symbol:SO_0777 "2-octaprenyl-6-methoxyphenol hydroxylase"
species:211586 "Shewanella oneidensis MR-1" [GO:0006744 "ubiquinone
biosynthetic process" evidence=ISS] [GO:0008681
"2-octaprenyl-6-methoxyphenol hydroxylase activity" evidence=ISS]
InterPro:IPR003042 InterPro:IPR010971 InterPro:IPR011295
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 GO:GO:0006744
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0016709
TIGRFAMs:TIGR01988 HOGENOM:HOG000255770 KO:K03185 OMA:HGSIFEL
GO:GO:0008681 TIGRFAMs:TIGR01984 RefSeq:NP_716408.1
ProteinModelPortal:Q8EIR0 GeneID:1168632 KEGG:son:SO_0777
PATRIC:23521227 ProtClustDB:CLSK905934 Uniprot:Q8EIR0
Length = 407
Score = 188 (71.2 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 47/175 (26%), Positives = 92/175 (52%)
Query: 146 GHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPL 205
GH + E N + + D + ++VE + + + +LN + + K++ +P+ +
Sbjct: 99 GHFG--MTELNASQFHLDALGHVVELERVGQVLFSELNKTQVKLYCPAKLSEL-IPD--I 153
Query: 206 NNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRT 265
++ + +SGE I KL++ DG +S+VR++ + + +++Q I+A ++ + P
Sbjct: 154 DSHTLVLDSGERICAKLVVAADGLQSKVRSSFYLPITQVAFEQTAIIANLQ-TDKPHQHW 212
Query: 266 AWQRFTPSGTVALLPLSDEFS----SLVWATTPENAKALLQMPGESFVDALNSEF 316
A++RFT +G +ALLP++D SLVWA A+ +L P F+ L F
Sbjct: 213 AYERFTETGPLALLPMADSQGQPRLSLVWALDHHRAQTMLNAPKAEFLAELQQAF 267
Score = 166 (63.5 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 34/123 (27%), Positives = 64/123 (52%)
Query: 357 VEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESV 416
++ R A+PL + R I C +G++A +HP+AGQG NLG D+ L+++ +
Sbjct: 275 IDVSERHAYPLNLSYMPRPIHHRCVFIGNAAQTLHPIAGQGFNLGLRDVVSLLEVLNTAR 334
Query: 417 SNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRP 476
G IG Y +R+ + + +I+ + R + + P+ + NLG +L++ P
Sbjct: 335 EQGEDIGSAAVTHAYLHVREHDRNSTIRNIEFLVRGFSNQYWPLALGRNLGLRLLSWFPP 394
Query: 477 IKS 479
+K+
Sbjct: 395 LKT 397
>DICTYBASE|DDB_G0274799 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specificity factor 73 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IC] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0274799 Pfam:PF07521 GO:GO:0046872 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000012 GO:GO:0003730
GO:GO:0004519 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
RefSeq:XP_643926.1 ProteinModelPortal:Q86A79 SMR:Q86A79
STRING:Q86A79 EnsemblProtists:DDB0233696 GeneID:8619353
KEGG:ddi:DDB_G0274799 ProtClustDB:CLSZ2431003 Uniprot:Q86A79
Length = 774
Score = 281 (104.0 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 56/135 (41%), Positives = 85/135 (62%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
+++TP+G+G +VGRSC+L+ GK +M DCG+H Y P F I + + D ID
Sbjct: 36 LEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSI--ESDIPD-IDL 92
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS-VEKKGDSNFFT 122
L++SHFHLDH A+PYF + G ++MTHPTKAI +LL D+ K+S + + D F
Sbjct: 93 LLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDK 152
Query: 123 SQMN--ILKIQILKY 135
S ++ + KI+ ++Y
Sbjct: 153 SDLDRSLEKIEKVRY 167
Score = 63 (27.2 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 293 TPENAKAL-LQMPGESFVDALNSEFNKPAELNESIQ--VATK-FTHNVL 337
TP+NA ++ L+ E L S P + N+ IQ + TK FTH++L
Sbjct: 469 TPKNAMSVALEFRPEKVAKTLGSIITNPPKQNDIIQGILVTKDFTHHIL 517
>GENEDB_PFALCIPARUM|PFC0825c [details] [associations]
symbol:PFC0825c "cleavage and polyadenylation
specificity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 GO:GO:0003729 GO:GO:0016787
EMBL:AL844502 GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 PIR:T18488
RefSeq:XP_001351256.1 ProteinModelPortal:O77371 PRIDE:O77371
EnsemblProtists:PFC0825c:mRNA GeneID:814500 KEGG:pfa:PFC0825c
EuPathDB:PlasmoDB:PF3D7_0318600 HOGENOM:HOG000283200
ProtClustDB:CLSZ2433497 Uniprot:O77371
Length = 1017
Score = 193 (73.0 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 49/166 (29%), Positives = 85/166 (51%)
Query: 57 VTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKG 116
+ ++IDC+IISHFH+DH GALP+FTE+ Y G I M++PTKA++PILL D +++ + K
Sbjct: 166 INEIIDCVIISHFHMDHIGALPFFTEILKYRGIILMSYPTKALSPILLLDSCRVT-DMKW 224
Query: 117 DSNFFTSQMNILKI---QILKYVMIKGTSKVWGHSSDDL---------LEFNKAHNYQDR 164
+ F Q+ +L ++L Y + W + D++ L+ N+ D
Sbjct: 225 EKKNFERQIKMLNEKSDELLNYNINCIKKDPWNINEDNIYNCIDKVIGLQINETFELGDM 284
Query: 165 ISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKI 210
++ A K+ N ++Y + +P++ L + I
Sbjct: 285 SITPYYAGHVLGACIYKIEVRNFSVIYTGD--YNTIPDKHLGSANI 328
Score = 157 (60.3 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 26/55 (47%), Positives = 40/55 (72%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGP 56
++I + LGAGQ VGRSC++V + + +M DCG H+GY D+RK+P+F + +GP
Sbjct: 7 TKIIIQVLGAGQTVGRSCVIVELENRKVMFDCGCHLGYKDERKYPNFNLLI-RGP 60
Score = 46 (21.3 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 17/79 (21%), Positives = 41/79 (51%)
Query: 173 LIIDAVTKKLNTLNIDIVYQKKVAHY---ELPEQPLNNVKIKFESGESIECKLLLGT--D 227
+II+ +K+N+ + + +K+++Y + ++ ++ K+K + + I+ K+ + T D
Sbjct: 686 IIIEHKEQKINSDQLFLYKNEKISNYHKKDKKKKAIDEHKLKVRN-KLIQKKINIQTNCD 744
Query: 228 GARSQVRNAMNVQYSNWSY 246
++ N Y N SY
Sbjct: 745 NNKNNKNKCFN-NYLNHSY 762
>UNIPROTKB|O77371 [details] [associations]
symbol:PFC0825c "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
InterPro:IPR001279 SMART:SM00849 Pfam:PF07521 GO:GO:0003729
GO:GO:0016787 EMBL:AL844502 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 PIR:T18488
RefSeq:XP_001351256.1 ProteinModelPortal:O77371 PRIDE:O77371
EnsemblProtists:PFC0825c:mRNA GeneID:814500 KEGG:pfa:PFC0825c
EuPathDB:PlasmoDB:PF3D7_0318600 HOGENOM:HOG000283200
ProtClustDB:CLSZ2433497 Uniprot:O77371
Length = 1017
Score = 193 (73.0 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 49/166 (29%), Positives = 85/166 (51%)
Query: 57 VTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKG 116
+ ++IDC+IISHFH+DH GALP+FTE+ Y G I M++PTKA++PILL D +++ + K
Sbjct: 166 INEIIDCVIISHFHMDHIGALPFFTEILKYRGIILMSYPTKALSPILLLDSCRVT-DMKW 224
Query: 117 DSNFFTSQMNILKI---QILKYVMIKGTSKVWGHSSDDL---------LEFNKAHNYQDR 164
+ F Q+ +L ++L Y + W + D++ L+ N+ D
Sbjct: 225 EKKNFERQIKMLNEKSDELLNYNINCIKKDPWNINEDNIYNCIDKVIGLQINETFELGDM 284
Query: 165 ISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKI 210
++ A K+ N ++Y + +P++ L + I
Sbjct: 285 SITPYYAGHVLGACIYKIEVRNFSVIYTGD--YNTIPDKHLGSANI 328
Score = 157 (60.3 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 26/55 (47%), Positives = 40/55 (72%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGP 56
++I + LGAGQ VGRSC++V + + +M DCG H+GY D+RK+P+F + +GP
Sbjct: 7 TKIIIQVLGAGQTVGRSCVIVELENRKVMFDCGCHLGYKDERKYPNFNLLI-RGP 60
Score = 46 (21.3 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 17/79 (21%), Positives = 41/79 (51%)
Query: 173 LIIDAVTKKLNTLNIDIVYQKKVAHY---ELPEQPLNNVKIKFESGESIECKLLLGT--D 227
+II+ +K+N+ + + +K+++Y + ++ ++ K+K + + I+ K+ + T D
Sbjct: 686 IIIEHKEQKINSDQLFLYKNEKISNYHKKDKKKKAIDEHKLKVRN-KLIQKKINIQTNCD 744
Query: 228 GARSQVRNAMNVQYSNWSY 246
++ N Y N SY
Sbjct: 745 NNKNNKNKCFN-NYLNHSY 762
>TIGR_CMR|CPS_1272 [details] [associations]
symbol:CPS_1272 "2-octaprenyl-6-methoxyphenol hydroxylase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006744
"ubiquinone biosynthetic process" evidence=ISS] [GO:0016709
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=ISS]
InterPro:IPR003042 InterPro:IPR010971 InterPro:IPR011295
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 eggNOG:COG0654
GO:GO:0006744 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016709
TIGRFAMs:TIGR01988 HOGENOM:HOG000255770 KO:K03185 OMA:HGSIFEL
GO:GO:0008681 TIGRFAMs:TIGR01984 RefSeq:YP_268015.1
ProteinModelPortal:Q486K0 STRING:Q486K0 GeneID:3520321
KEGG:cps:CPS_1272 PATRIC:21465779
BioCyc:CPSY167879:GI48-1353-MONOMER Uniprot:Q486K0
Length = 437
Score = 172 (65.6 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 44/119 (36%), Positives = 62/119 (52%)
Query: 208 VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAW 267
VK+ SGE++ KLLLG DGA S VR N+ + Y Q ++A V S + ++ A+
Sbjct: 181 VKVTLNSGETLSAKLLLGCDGAHSPVRKLANIDVTCDDYQQVALIANVSTSKAHHHK-AF 239
Query: 268 QRFTPSGTVALLPLSD---EFS-------SLVWATTPENAKALLQMPGESFVDALNSEF 316
+RFTP G +A+LPL + S SLVW TPE A + + + F L F
Sbjct: 240 ERFTPFGPIAMLPLKSLKTKSSAAGASRCSLVWTMTPEQAAEIKHLSDDDFKVELERAF 298
Score = 167 (63.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 33/101 (32%), Positives = 59/101 (58%)
Query: 381 ALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENL 440
AL+G+++H IHP+AGQG NLG D+ + L +++ G IG+ L Y+ R ++
Sbjct: 330 ALVGNASHTIHPIAGQGFNLGLRDVEVMTDLVKNALAAGQDIGNFALLHSYQMNRAKDQQ 389
Query: 441 PVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
V+ D + ++ + L P+ + N+G Q +N + P+K+ L
Sbjct: 390 QVIQLTDSLVTLFANDLPPLVVGRNIGLQALNIMSPLKNAL 430
>TAIR|locus:2206076 [details] [associations]
symbol:CPSF73-I "cleavage and polyadenylation specificity
factor 73-I" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0045787 "positive regulation of cell cycle" evidence=RCA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006397
GO:GO:0090305 EMBL:AC018908 GO:GO:0004518 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
EMBL:AY140900 EMBL:AY150478 EMBL:AY074280 EMBL:AK316692
EMBL:AK316794 IPI:IPI00533462 PIR:G96635 RefSeq:NP_001031215.1
RefSeq:NP_176297.1 RefSeq:NP_849835.1 UniGene:At.23510
ProteinModelPortal:Q9C952 SMR:Q9C952 IntAct:Q9C952 STRING:Q9C952
PaxDb:Q9C952 PRIDE:Q9C952 EnsemblPlants:AT1G61010.1
EnsemblPlants:AT1G61010.2 EnsemblPlants:AT1G61010.3 GeneID:842393
KEGG:ath:AT1G61010 TAIR:At1g61010 HOGENOM:HOG000203394
InParanoid:Q9C952 KO:K14403 OMA:YVSFSAH PhylomeDB:Q9C952
ProtClustDB:CLSN2681829 Genevestigator:Q9C952 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 Uniprot:Q9C952
Length = 693
Score = 287 (106.1 bits), Expect = 4.8e-22, P = 4.8e-22
Identities = 63/156 (40%), Positives = 91/156 (58%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ VTPLGAG +VGRSC+ +S GKNI+ DCG+H Y P F I P ID
Sbjct: 21 QLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPSS-----ID 75
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+I+HFH+DH +LPYF E + G ++MTH TKAI +LL D+ K+S D F
Sbjct: 76 VLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 135
Query: 123 SQMN--ILKIQILKY---VMIKGTSKVWGHSSDDLL 153
+N + KI+++ + V + G K W +++ +L
Sbjct: 136 QDINKSMDKIEVIDFHQTVEVNGI-KFWCYTAGHVL 170
>UNIPROTKB|P25534 [details] [associations]
symbol:ubiH species:83333 "Escherichia coli K-12"
[GO:0006979 "response to oxidative stress" evidence=IMP]
[GO:0009416 "response to light stimulus" evidence=IMP] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0016709
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0004497
"monooxygenase activity" evidence=IEA] [GO:0008681
"2-octaprenyl-6-methoxyphenol hydroxylase activity"
evidence=IEA;IMP] [GO:0006744 "ubiquinone biosynthetic process"
evidence=IEA;IMP] InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR011295 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 UniPathway:UPA00232 InterPro:IPR002938 Pfam:PF01494
GO:GO:0006979 GO:GO:0050660 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR eggNOG:COG0654
GO:GO:0006744 GO:GO:0009416 EMBL:U28377 EMBL:D90281 GO:GO:0016709
TIGRFAMs:TIGR01988 PIR:C65075 RefSeq:NP_417383.1 RefSeq:YP_491108.1
ProteinModelPortal:P25534 SMR:P25534 DIP:DIP-11071N IntAct:P25534
MINT:MINT-1289084 EnsemblBacteria:EBESCT00000003230
EnsemblBacteria:EBESCT00000017525 GeneID:12933351 GeneID:947388
KEGG:ecj:Y75_p2839 KEGG:eco:b2907 PATRIC:32121228 EchoBASE:EB1300
EcoGene:EG11324 HOGENOM:HOG000255770 KO:K03185 OMA:HGSIFEL
ProtClustDB:PRK05732
BioCyc:EcoCyc:OCTAPRENYL-METHOXYPHENOL-OH-MONOMER
BioCyc:ECOL316407:JW2875-MONOMER
BioCyc:MetaCyc:OCTAPRENYL-METHOXYPHENOL-OH-MONOMER
Genevestigator:P25534 GO:GO:0008681 TIGRFAMs:TIGR01984
Uniprot:P25534
Length = 392
Score = 171 (65.3 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 38/111 (34%), Positives = 60/111 (54%)
Query: 206 NNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRT 265
++V++ ESGE++ ++L+ DG S + A V + Y+Q ++A V S + R
Sbjct: 141 SHVEVTLESGETLTGRVLVAADGTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGR- 199
Query: 266 AWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEF 316
A++RFT G +A+LP+SD SLVW E + +L E F L S F
Sbjct: 200 AFERFTQHGPLAMLPMSDGRCSLVWCHPLERREEVLSWSDEKFCRELQSAF 250
Score = 160 (61.4 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 33/120 (27%), Positives = 60/120 (50%)
Query: 362 RAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYP 421
R+A+PL H+ R I L+G++A +HP+AGQG NLG D+ L + ++ G
Sbjct: 263 RSAYPLALTHAARSITHRTVLVGNAAQTLHPIAGQGFNLGMRDVMSLAETLTQAQERGED 322
Query: 422 IGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
+G L +Y+ RQ + + D + ++ + P+ + N+G + P + +L
Sbjct: 323 MGDYGVLCRYQQRRQSDREATIGVTDSLVHLFANRWAPLVVGRNIGLMTMELFTPARDVL 382
>UNIPROTKB|P79101 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0046872 GO:GO:0003723 GO:GO:0030529 GO:GO:0004521
GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:X95906 EMBL:BC104553 IPI:IPI00708839 RefSeq:NP_776709.1
UniGene:Bt.5045 ProteinModelPortal:P79101 SMR:P79101 STRING:P79101
PRIDE:P79101 Ensembl:ENSBTAT00000026303 GeneID:281712
KEGG:bta:281712 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 InParanoid:P79101 OrthoDB:EOG4FN4H6
NextBio:20805634 ArrayExpress:P79101 GO:GO:0008409 Uniprot:P79101
Length = 684
Score = 279 (103.3 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 62/156 (39%), Positives = 89/156 (57%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 125 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 160
>UNIPROTKB|Q9UKF6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
EMBL:AF017269 Pfam:PF07521 EMBL:AF171877 EMBL:CH471053
GO:GO:0046872 Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0004521 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 Reactome:REACT_78 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409
EMBL:AC080162 EMBL:BC011654 EMBL:BC020211 IPI:IPI00007818
RefSeq:NP_057291.1 UniGene:Hs.515972 PDB:2I7T PDB:2I7V PDBsum:2I7T
PDBsum:2I7V ProteinModelPortal:Q9UKF6 SMR:Q9UKF6 DIP:DIP-42501N
MINT:MINT-1742891 STRING:Q9UKF6 PhosphoSite:Q9UKF6 DMDM:18203503
PaxDb:Q9UKF6 PeptideAtlas:Q9UKF6 PRIDE:Q9UKF6 DNASU:51692
Ensembl:ENST00000238112 GeneID:51692 KEGG:hsa:51692 UCSC:uc002qzo.1
GeneCards:GC02P009514 HGNC:HGNC:2326 HPA:HPA034657 MIM:606029
neXtProt:NX_Q9UKF6 PharmGKB:PA26843 InParanoid:Q9UKF6
PhylomeDB:Q9UKF6 ChiTaRS:CPSF3 EvolutionaryTrace:Q9UKF6
GenomeRNAi:51692 NextBio:55702 ArrayExpress:Q9UKF6 Bgee:Q9UKF6
CleanEx:HS_CPSF3 Genevestigator:Q9UKF6 GermOnline:ENSG00000119203
Uniprot:Q9UKF6
Length = 684
Score = 279 (103.3 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 62/156 (39%), Positives = 89/156 (57%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 125 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 160
>MGI|MGI:1859328 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specificity
factor 3" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISO;IDA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO;IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
MGI:MGI:1859328 GO:GO:0046872 GO:GO:0003723 GO:GO:0030529
GO:GO:0004521 GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 GO:GO:0006398
HOGENOM:HOG000203394 KO:K14403 OMA:YVSFSAH InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409 ChiTaRS:CPSF3
EMBL:AF203969 EMBL:BC023297 IPI:IPI00135099 RefSeq:NP_061283.2
UniGene:Mm.356778 ProteinModelPortal:Q9QXK7 SMR:Q9QXK7
STRING:Q9QXK7 PhosphoSite:Q9QXK7 PaxDb:Q9QXK7 PRIDE:Q9QXK7
Ensembl:ENSMUST00000067284 GeneID:54451 KEGG:mmu:54451
InParanoid:Q8CIM0 NextBio:311332 Bgee:Q9QXK7 CleanEx:MM_CPSF3
Genevestigator:Q9QXK7 GermOnline:ENSMUSG00000054309 Uniprot:Q9QXK7
Length = 684
Score = 279 (103.3 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 62/156 (39%), Positives = 89/156 (57%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 125 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 160
>UNIPROTKB|F1NKW5 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0003723 GO:GO:0004521 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:AADN02018718
IPI:IPI00600642 Ensembl:ENSGALT00000026493 Uniprot:F1NKW5
Length = 685
Score = 279 (103.3 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 62/156 (39%), Positives = 89/156 (57%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 125 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 160
>RGD|1305767 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specific factor 3,
73kDa" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0004521 "endoribonuclease activity" evidence=ISO]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISO] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISO] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 RGD:1305767 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6
UniGene:Rn.100522 EMBL:BC099817 IPI:IPI00365532
RefSeq:NP_001025201.1 ProteinModelPortal:Q499P4 SMR:Q499P4
STRING:Q499P4 GeneID:298916 KEGG:rno:298916 InParanoid:Q499P4
NextBio:644507 Genevestigator:Q499P4 Uniprot:Q499P4
Length = 685
Score = 279 (103.3 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 62/156 (39%), Positives = 89/156 (57%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 125 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 160
>UNIPROTKB|G3V6W7 [details] [associations]
symbol:Cpsf3 "Protein Cpsf3" species:10116 "Rattus
norvegicus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
RGD:1305767 GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 EMBL:CH473947 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 UniGene:Rn.100522
Ensembl:ENSRNOT00000009652 Uniprot:G3V6W7
Length = 685
Score = 279 (103.3 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 62/156 (39%), Positives = 89/156 (57%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 125 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 160
>UNIPROTKB|E2R7R2 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 GeneTree:ENSGT00700000104485 EMBL:AAEX03010701
RefSeq:XP_003639652.1 Ensembl:ENSCAFT00000005417 GeneID:100856414
KEGG:cfa:100856414 Uniprot:E2R7R2
Length = 717
Score = 279 (103.3 bits), Expect = 4.0e-21, P = 4.0e-21
Identities = 62/156 (39%), Positives = 89/156 (57%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 44 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 98
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 99 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 157
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 158 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 193
>ZFIN|ZDB-GENE-030131-3275 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specific factor 3" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-030131-3275 GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 CTD:51692
HOVERGEN:HBG051107 EMBL:AY648793 IPI:IPI00509063
RefSeq:NP_001003836.1 UniGene:Dr.77231 ProteinModelPortal:Q6DRG6
SMR:Q6DRG6 STRING:Q6DRG6 GeneID:324554 KEGG:dre:324554
NextBio:20808833 ArrayExpress:Q6DRG6 Uniprot:Q6DRG6
Length = 690
Score = 276 (102.2 bits), Expect = 7.9e-21, P = 7.9e-21
Identities = 61/156 (39%), Positives = 89/156 (57%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IM+DCG+H G P I P ID
Sbjct: 18 QLLIRPLGAGQEVGRSCIILEFKGRKIMVDCGIHPGLEGMDALPYIDLIDPAE-----ID 72
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 73 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 131
Query: 123 S---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+ ++ KI+ + + +K + K W + + +L
Sbjct: 132 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 167
>UNIPROTKB|I3LKR1 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0004521 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:FP312696
Ensembl:ENSSSCT00000027309 Uniprot:I3LKR1
Length = 687
Score = 270 (100.1 bits), Expect = 3.6e-20, P = 3.6e-20
Identities = 61/158 (38%), Positives = 88/158 (55%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISV--EKKGDSNF 120
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+ D
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVRKCSNISADDML 125
Query: 121 FTS---QMNILKIQILKYVMIKGTS--KVWGHSSDDLL 153
+T + ++ KI+ + + +K + K W + + +L
Sbjct: 126 YTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVL 163
>WB|WBGene00013460 [details] [associations]
symbol:cpsf-3 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AL132951 RefSeq:NP_502553.2
ProteinModelPortal:Q95PY8 SMR:Q95PY8 STRING:Q95PY8 PaxDb:Q95PY8
EnsemblMetazoa:Y67H2A.1.1 EnsemblMetazoa:Y67H2A.1.2 GeneID:178285
KEGG:cel:CELE_Y67H2A.1 UCSC:Y67H2A.1 CTD:178285 WormBase:Y67H2A.1
InParanoid:Q95PY8 NextBio:900506 Uniprot:Q95PY8
Length = 707
Score = 268 (99.4 bits), Expect = 6.4e-20, P = 6.4e-20
Identities = 57/133 (42%), Positives = 80/133 (60%)
Query: 7 TPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLII 66
TPLG+GQ+VGRSC L+ GK +MLDCG+H G H P F+ + ID L+I
Sbjct: 14 TPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIEN-----IDLLLI 68
Query: 67 SHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSN-FFTS-- 123
+HFHLDHCGALP+ + + G +MTH TKAI +LL D+ +IS D N +T
Sbjct: 69 THFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYGGPDRNQLYTEDD 128
Query: 124 -QMNILKIQILKY 135
+ ++ KI+ + +
Sbjct: 129 LEKSMAKIETIDF 141
>FB|FBgn0261065 [details] [associations]
symbol:Cpsf73 "Cleavage and polyadenylation specificity
factor 73" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0003677 GO:GO:0006378 GO:GO:0016787 GO:GO:0005847
GO:GO:0006379 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 KO:K14403 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AY119128 RefSeq:NP_650738.1
UniGene:Dm.13714 SMR:Q9VE51 IntAct:Q9VE51 MINT:MINT-804945
STRING:Q9VE51 EnsemblMetazoa:FBtr0083690 GeneID:42240
KEGG:dme:Dmel_CG7698 UCSC:CG7698-RA CTD:42240 FlyBase:FBgn0261065
InParanoid:Q9VE51 OrthoDB:EOG4P5HR4 GenomeRNAi:42240 NextBio:827838
Uniprot:Q9VE51
Length = 684
Score = 267 (99.0 bits), Expect = 7.7e-20, P = 7.7e-20
Identities = 55/108 (50%), Positives = 67/108 (62%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
+++ PLGAGQ+VGRSCI++ GK IMLDCG+H G P I D ID
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIE-----ADEIDL 72
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
L ISHFHLDHCGALP+F + G +MTH TKAI +L D+ KIS
Sbjct: 73 LFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKIS 120
>UNIPROTKB|Q0BWC9 [details] [associations]
symbol:ubiF
"2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006744
"ubiquinone biosynthetic process" evidence=ISS] [GO:0016709
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=ISS]
InterPro:IPR003042 InterPro:IPR010971 PRINTS:PR00420
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 eggNOG:COG0654
GO:GO:0006744 EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0016709
TIGRFAMs:TIGR01988 HOGENOM:HOG000255771 KO:K03185
RefSeq:YP_762214.1 ProteinModelPortal:Q0BWC9 STRING:Q0BWC9
GeneID:4288366 KEGG:hne:HNE_3543 PATRIC:32219971 OMA:VETELCH
BioCyc:HNEP228405:GI69-3543-MONOMER Uniprot:Q0BWC9
Length = 402
Score = 160 (61.4 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 364 AFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIG 423
++PL + GP ALLGD+A RI+PLAGQG+NLGF D L + E+ G G
Sbjct: 269 SYPLVMQIARDMTGPRVALLGDAARRINPLAGQGLNLGFKDAGALYDVILEAREVGLDPG 328
Query: 424 HPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
L +Y R+ ++ L +D + R + + +K L +L N + PI+ L
Sbjct: 329 SETVLARYREGRRFDSASTALFMDAVDRAFSNDNLLLKPLRSLALTAANRIGPIRQAL 386
Score = 152 (58.6 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 38/117 (32%), Positives = 53/117 (45%)
Query: 202 EQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSP 261
E + + E GES C L+ DG S VR A + SY + A VK++ P
Sbjct: 141 EAQASGALVHLEGGESFRCGLIAACDGIHSAVRQAAGIGTEGRSYGKSVFAADVKLAR-P 199
Query: 262 PNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNK 318
A Q FTP G A LPL D ++L W A+ L ++ E LN+ F++
Sbjct: 200 HGGIARQLFTPEGPFATLPLPDNRANLAWYMKTGAAETLAKLSKEQIEAELNARFSE 256
>UNIPROTKB|Q9KP99 [details] [associations]
symbol:VC_2474 "VisC protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006744 GO:GO:0016709
TIGRFAMs:TIGR01988 OMA:LTFWDYG PIR:D82071 RefSeq:NP_232103.1
ProteinModelPortal:Q9KP99 DNASU:2613016 GeneID:2613016
KEGG:vch:VC2474 PATRIC:20083967 ProtClustDB:PRK08850 Uniprot:Q9KP99
Length = 409
Score = 240 (89.5 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 76/246 (30%), Positives = 119/246 (48%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLI----IDAVTKKLN-TLNIDIVYQKKVAH 197
+VW S +EF Q + +IVEN +I + V ++ N TL++ Q +A
Sbjct: 82 EVWEQDSFARIEFKANEMTQPNLGHIVENRVIQLALFEQVQQQANVTLHVPATCQS-IAV 140
Query: 198 YELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKI 257
E + + +G+++ KL++G DGA S +R M++ ++W Y +VA V+
Sbjct: 141 GE------SEAWLTLSNGQALSAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRT 194
Query: 258 STSPPNRTAWQRFTPSGTVALLPLSD-EFSSLVWATTPENAKALLQMPGESFVDALNSEF 316
S P N+ A Q FT G +A LP+S+ SS+VW+T P A+ALL M F AL +EF
Sbjct: 195 S-DPHNKVARQIFTAQGPLAFLPMSEPHMSSIVWSTEPSRAEALLNMNDVQFNKALTAEF 253
Query: 317 NKPAELNESIQVATKFTHNVLEFFNLSTGNEQ-VVPPRVMSVEEKSRAAFPL-GFGHSVR 374
+ A L V + + F L + V PRV V + + PL G G ++
Sbjct: 254 D--ARLGRCEVVGER------QAFPLKMRYARDFVAPRVALVGDAAHTIHPLAGQGVNLG 305
Query: 375 YIGPGC 380
+ C
Sbjct: 306 LLDAAC 311
Score = 183 (69.5 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 45/144 (31%), Positives = 71/144 (49%)
Query: 362 RAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYP 421
R AFPL ++ ++ P AL+GD+AH IHPLAGQGVNLG D ACL Q
Sbjct: 266 RQAFPLKMRYARDFVAPRVALVGDAAHTIHPLAGQGVNLGLLDAACLAQELLSLWQQNRD 325
Query: 422 IGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
IG +L YE R+ E ++ ++ ++ K++ +G +LV + K +
Sbjct: 326 IGDERNLRHYERWRKAEAAKMIAAMQGFRDLFEGDNPAKKLIRGIGMRLVGQLPGAKDEI 385
Query: 482 CD--IFMRTSMEKVTLLVWNARYY 503
+ ++ + ++ VW R Y
Sbjct: 386 MKRALGLKGDLPELAKQVWLERAY 409
>TIGR_CMR|VC_2474 [details] [associations]
symbol:VC_2474 "visC protein" species:686 "Vibrio cholerae
O1 biovar El Tor" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003042 InterPro:IPR010971 InterPro:IPR018168
PRINTS:PR00420 PROSITE:PS01304 InterPro:IPR002938 Pfam:PF01494
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006744
GO:GO:0016709 TIGRFAMs:TIGR01988 OMA:LTFWDYG PIR:D82071
RefSeq:NP_232103.1 ProteinModelPortal:Q9KP99 DNASU:2613016
GeneID:2613016 KEGG:vch:VC2474 PATRIC:20083967 ProtClustDB:PRK08850
Uniprot:Q9KP99
Length = 409
Score = 240 (89.5 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 76/246 (30%), Positives = 119/246 (48%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLI----IDAVTKKLN-TLNIDIVYQKKVAH 197
+VW S +EF Q + +IVEN +I + V ++ N TL++ Q +A
Sbjct: 82 EVWEQDSFARIEFKANEMTQPNLGHIVENRVIQLALFEQVQQQANVTLHVPATCQS-IAV 140
Query: 198 YELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKI 257
E + + +G+++ KL++G DGA S +R M++ ++W Y +VA V+
Sbjct: 141 GE------SEAWLTLSNGQALSAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRT 194
Query: 258 STSPPNRTAWQRFTPSGTVALLPLSD-EFSSLVWATTPENAKALLQMPGESFVDALNSEF 316
S P N+ A Q FT G +A LP+S+ SS+VW+T P A+ALL M F AL +EF
Sbjct: 195 S-DPHNKVARQIFTAQGPLAFLPMSEPHMSSIVWSTEPSRAEALLNMNDVQFNKALTAEF 253
Query: 317 NKPAELNESIQVATKFTHNVLEFFNLSTGNEQ-VVPPRVMSVEEKSRAAFPL-GFGHSVR 374
+ A L V + + F L + V PRV V + + PL G G ++
Sbjct: 254 D--ARLGRCEVVGER------QAFPLKMRYARDFVAPRVALVGDAAHTIHPLAGQGVNLG 305
Query: 375 YIGPGC 380
+ C
Sbjct: 306 LLDAAC 311
Score = 183 (69.5 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 45/144 (31%), Positives = 71/144 (49%)
Query: 362 RAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYP 421
R AFPL ++ ++ P AL+GD+AH IHPLAGQGVNLG D ACL Q
Sbjct: 266 RQAFPLKMRYARDFVAPRVALVGDAAHTIHPLAGQGVNLGLLDAACLAQELLSLWQQNRD 325
Query: 422 IGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
IG +L YE R+ E ++ ++ ++ K++ +G +LV + K +
Sbjct: 326 IGDERNLRHYERWRKAEAAKMIAAMQGFRDLFEGDNPAKKLIRGIGMRLVGQLPGAKDEI 385
Query: 482 CD--IFMRTSMEKVTLLVWNARYY 503
+ ++ + ++ VW R Y
Sbjct: 386 MKRALGLKGDLPELAKQVWLERAY 409
>TIGR_CMR|CPS_1273 [details] [associations]
symbol:CPS_1273 "monooxygenase family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 eggNOG:COG0654
GO:GO:0006744 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016709
TIGRFAMs:TIGR01988 OMA:LTFWDYG HOGENOM:HOG000255771
RefSeq:YP_268016.1 ProteinModelPortal:Q486J9 STRING:Q486J9
GeneID:3519739 KEGG:cps:CPS_1273 PATRIC:21465781
BioCyc:CPSY167879:GI48-1354-MONOMER Uniprot:Q486J9
Length = 442
Score = 241 (89.9 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 84/270 (31%), Positives = 127/270 (47%)
Query: 218 IECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVA 277
I KL++G DGA S VR MN+ YD IVATV+ N TAWQ F P+G +A
Sbjct: 173 IIAKLVVGADGANSWVRQQMNMAMIFKDYDHHAIVATVECPQGH-NNTAWQVFLPTGPLA 231
Query: 278 LLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQV-ATKFTHNV 336
LPL S+ ++ A + P + + S P + I + AT+F
Sbjct: 232 FLPLRSAQSA--------SSTAGIADPVNNLCSIVYS--TSPDDAKRLIALDATEFAK-- 279
Query: 337 LEFFNLSTGNEQVVPPRVMSVEEKS-RAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAG 395
E S G ++ + KS R +PL + ++ L+GD+AH IHPLAG
Sbjct: 280 -ELTAASDG-------KLGDITLKSERFTYPLTMRLAQDFVKDRVVLIGDAAHTIHPLAG 331
Query: 396 QGVNLGFGDIACLVQ-LSA---ESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYR 451
QGVNLG D A L Q L+A E N + + L + R+ E ++ ++ + +
Sbjct: 332 QGVNLGLLDAAALAQTLTAKLNEHDDNHAELVNTSDLKAFSRWRKSEATEMITAMAGIKQ 391
Query: 452 VYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
+ +PVK++ +G ++N P K+ L
Sbjct: 392 AFAPQQSPVKLIRGVGMNILNNFAPAKNRL 421
>TIGR_CMR|SO_1183 [details] [associations]
symbol:SO_1183 "oxidoreductase, FAD-binding" species:211586
"Shewanella oneidensis MR-1" [GO:0008152 "metabolic process"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
InterPro:IPR003042 InterPro:IPR010971 PRINTS:PR00420
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 GO:GO:0006744
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0016709
TIGRFAMs:TIGR01988 HOGENOM:HOG000255771 KO:K03184 OMA:RYRDNQL
RefSeq:NP_716808.1 ProteinModelPortal:Q8EHN6 DNASU:1169012
GeneID:1169012 KEGG:son:SO_1183 PATRIC:23522006
ProtClustDB:CLSK906138 Uniprot:Q8EHN6
Length = 404
Score = 239 (89.2 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 66/224 (29%), Positives = 110/224 (49%)
Query: 152 LLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELPEQPLNNVKI 210
+ +F+ + + +IVEN L+ A+ +++ NI + ++VAH+ + ++ V +
Sbjct: 103 ITQFHSSQIGASHLGHIVENRLVQLALWEQMQQWENIRLFCPERVAHFA---RGVDTVSV 159
Query: 211 KFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRF 270
+SG +E KLL+G DGA S VR + S W Y Q ++ ++ +T WQ+F
Sbjct: 160 HLQSGCLLEAKLLVGADGANSHVRQWAGIGISGWDYAQSAMLINIQ-TTQGQQDVTWQQF 218
Query: 271 TPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVAT 330
TPSG +LLPL +SLVW K L+Q+ + + + F PA L+ V
Sbjct: 219 TPSGPRSLLPLPGNHASLVWYDDANRIKQLMQLNNKQLAEQIRQHF--PARLDSDFIVEA 276
Query: 331 KFTHNVLEFFNLSTGNEQV-VPPRVMSVEEKSRAAFPLGFGHSV 373
K + F L+ + QV V P V+ + + + PL G V
Sbjct: 277 KGS------FALTRRHAQVYVKPNVVILGDAAHTINPLA-GQGV 313
Score = 215 (80.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 57/216 (26%), Positives = 105/216 (48%)
Query: 265 TAWQRFTPSGTVALLPLSDEFSSLVWAT-TPENAKALLQMPGESFVDALNSEFNKPAELN 323
+ W + S + + + + W TP ++LL +PG + N+ +L
Sbjct: 191 SGWD-YAQSAMLINIQTTQGQQDVTWQQFTPSGPRSLLPLPGNHASLVWYDDANRIKQL- 248
Query: 324 ESIQVATK-FTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCAL 382
+Q+ K + + F ++ +V +++ +F L H+ Y+ P +
Sbjct: 249 --MQLNNKQLAEQIRQHFPARLDSDFIV---------EAKGSFALTRRHAQVYVKPNVVI 297
Query: 383 LGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPV 442
LGD+AH I+PLAGQGVNLGF D+ L+ + +++ P E L KY++ R +N +
Sbjct: 298 LGDAAHTINPLAGQGVNLGFKDVEALLSVIKAALTEDKPWWSTEVLGKYQAKRYLDNQLM 357
Query: 443 MLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
M ++D+ Y + + + P+K+L N +L N P+K
Sbjct: 358 MTTMDVFYAGFSNDILPLKLLRNGALKLANINSPLK 393
>UNIPROTKB|Q9KP98 [details] [associations]
symbol:VC_2475 "UbiH protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006744 "ubiquinone biosynthetic
process" evidence=ISS] InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR011295 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 InterPro:IPR002938 Pfam:PF01494 GO:GO:0003824
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006744
GO:GO:0016709 TIGRFAMs:TIGR01988 KO:K03185 OMA:HGSIFEL
ProtClustDB:PRK05732 GO:GO:0008681 TIGRFAMs:TIGR01984 PIR:E82071
RefSeq:NP_232104.1 ProteinModelPortal:Q9KP98 DNASU:2613017
GeneID:2613017 KEGG:vch:VC2475 PATRIC:20083969 Uniprot:Q9KP98
Length = 402
Score = 161 (61.7 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 207 NVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTA 266
+V ++ + E+++ KLL+ DGA S A+ + ++Q ++A + S P A
Sbjct: 156 SVTVQLNTKETLQGKLLVAADGALSTCCQALGLAMQEHDFEQVALIANIT-SAQPHAGRA 214
Query: 267 WQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEF 316
++RFTP G VALLP+S + SLVW PE L F+ L F
Sbjct: 215 FERFTPHGPVALLPMSQDRLSLVWCLPPEQVAHWLHCSEAEFLQGLQQAF 264
Score = 116 (45.9 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 32/121 (26%), Positives = 62/121 (51%)
Query: 362 RAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYP 421
R+ +PL + + + A++G++A +HP+AGQG NLG D+A L AE ++
Sbjct: 277 RSVYPLVLRYREQTVSHRFAIVGNAAQTLHPIAGQGFNLGIRDVATL----AEEITRSDD 332
Query: 422 IGHPESLTKYESIRQRENLP-VMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSI 480
G L +Y RQ + + L+ L++ + + +++ NLG ++ + +K+
Sbjct: 333 AGEYALLQRYFQRRQADRTATISLTTGLVH-TFSNDWLAMRMGRNLGLMAMDNLPLLKAP 391
Query: 481 L 481
L
Sbjct: 392 L 392
>TIGR_CMR|VC_2475 [details] [associations]
symbol:VC_2475 "ubiH protein" species:686 "Vibrio cholerae
O1 biovar El Tor" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0006744 "ubiquinone biosynthetic process" evidence=ISS]
InterPro:IPR003042 InterPro:IPR010971 InterPro:IPR011295
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
InterPro:IPR002938 Pfam:PF01494 GO:GO:0003824 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006744 GO:GO:0016709
TIGRFAMs:TIGR01988 KO:K03185 OMA:HGSIFEL ProtClustDB:PRK05732
GO:GO:0008681 TIGRFAMs:TIGR01984 PIR:E82071 RefSeq:NP_232104.1
ProteinModelPortal:Q9KP98 DNASU:2613017 GeneID:2613017
KEGG:vch:VC2475 PATRIC:20083969 Uniprot:Q9KP98
Length = 402
Score = 161 (61.7 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 207 NVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTA 266
+V ++ + E+++ KLL+ DGA S A+ + ++Q ++A + S P A
Sbjct: 156 SVTVQLNTKETLQGKLLVAADGALSTCCQALGLAMQEHDFEQVALIANIT-SAQPHAGRA 214
Query: 267 WQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEF 316
++RFTP G VALLP+S + SLVW PE L F+ L F
Sbjct: 215 FERFTPHGPVALLPMSQDRLSLVWCLPPEQVAHWLHCSEAEFLQGLQQAF 264
Score = 116 (45.9 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 32/121 (26%), Positives = 62/121 (51%)
Query: 362 RAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYP 421
R+ +PL + + + A++G++A +HP+AGQG NLG D+A L AE ++
Sbjct: 277 RSVYPLVLRYREQTVSHRFAIVGNAAQTLHPIAGQGFNLGIRDVATL----AEEITRSDD 332
Query: 422 IGHPESLTKYESIRQRENLP-VMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSI 480
G L +Y RQ + + L+ L++ + + +++ NLG ++ + +K+
Sbjct: 333 AGEYALLQRYFQRRQADRTATISLTTGLVH-TFSNDWLAMRMGRNLGLMAMDNLPLLKAP 391
Query: 481 L 481
L
Sbjct: 392 L 392
>TIGR_CMR|ECH_0020 [details] [associations]
symbol:ECH_0020 "ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family" species:205920 "Ehrlichia chaffeensis
str. Arkansas" [GO:0004497 "monooxygenase activity" evidence=ISS]
[GO:0006744 "ubiquinone biosynthetic process" evidence=ISS]
InterPro:IPR003042 InterPro:IPR010971 InterPro:IPR018168
PRINTS:PR00420 PROSITE:PS01304 InterPro:IPR002938 Pfam:PF01494
GO:GO:0050660 EMBL:CP000236 GenomeReviews:CP000236_GR
eggNOG:COG0654 GO:GO:0006744 GO:GO:0016709 TIGRFAMs:TIGR01988
HOGENOM:HOG000255771 KO:K03185 RefSeq:YP_506854.1
ProteinModelPortal:Q2GI79 STRING:Q2GI79 GeneID:3927414
KEGG:ech:ECH_0020 PATRIC:20575613 OMA:EEHFLPP
ProtClustDB:CLSK749492 BioCyc:ECHA205920:GJNR-20-MONOMER
Uniprot:Q2GI79
Length = 390
Score = 142 (55.0 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 38/152 (25%), Positives = 72/152 (47%)
Query: 165 ISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLL 224
+ YIVE+ + DA K + +N+ Y + Y+ + V+I+ + LL+
Sbjct: 101 MGYIVESKFLCDAFKKHIKKINL---YSE--CTYKSVNITNDLVRIELTDNTILLTSLLI 155
Query: 225 GTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDE 284
+G S +R ++ N Y Q I+ +K T+ N A + F G A+LP+ D
Sbjct: 156 SAEGKNSTLRQIFDIPSINHDYSQSSIICNIK-HTNHHNNLAIEHFFHGGPFAILPMYDG 214
Query: 285 F-SSLVWATTPENAKALLQMPGESFVDALNSE 315
+ SS+VW + ++ L+++ + F+ L +
Sbjct: 215 YRSSVVWTNKTQISEMLMKLKKQDFMAELEKK 246
Score = 134 (52.2 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 40/136 (29%), Positives = 60/136 (44%)
Query: 347 EQVVPPRVMSVEEKSRA-AFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDI 405
E+ P V ++ S FPL + AL+GD+AH IHP+AGQG+NLG DI
Sbjct: 244 EKKCAPYVNDIKLDSEIKCFPLHLMFAKHLYKNRFALIGDAAHSIHPIAGQGLNLGIRDI 303
Query: 406 ACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGN 465
LV + G IG L + R +N + + L+ ++ KI
Sbjct: 304 DKLVNHIKSAKQYGIDIGSNYVLKNFSYDRYFDNSSMAILTTLIDGIFTKKSCTAKIARR 363
Query: 466 LGFQLVNAVRPIKSIL 481
G +V + IK+ +
Sbjct: 364 FGLFIVQNSKSIKNYM 379
>TIGR_CMR|APH_0009 [details] [associations]
symbol:APH_0009 "ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family" species:212042 "Anaplasma
phagocytophilum HZ" [GO:0004497 "monooxygenase activity"
evidence=ISS] [GO:0006744 "ubiquinone biosynthetic process"
evidence=ISS] InterPro:IPR003042 InterPro:IPR010971
InterPro:IPR018168 PRINTS:PR00420 PROSITE:PS01304
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 eggNOG:COG0654
GO:GO:0006744 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0016709
TIGRFAMs:TIGR01988 HOGENOM:HOG000255771 KO:K03185
ProtClustDB:CLSK749492 RefSeq:YP_504647.1 ProteinModelPortal:Q2GLV4
STRING:Q2GLV4 GeneID:3930285 KEGG:aph:APH_0009 PATRIC:20948558
OMA:RSPIRQA BioCyc:APHA212042:GHPM-50-MONOMER Uniprot:Q2GLV4
Length = 392
Score = 147 (56.8 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 45/166 (27%), Positives = 81/166 (48%)
Query: 165 ISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLL 224
+ Y+VE I + +KLN D++ + + + +I G+ I KL++
Sbjct: 103 MGYVVEASEIAKFMHQKLN---FDVITSSSCKLFTVKD---GFAEIYLSCGKKIYTKLVV 156
Query: 225 GTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDE 284
+G S+ RN+++++ N++++Q IV + S N TA + F +G A+LP+
Sbjct: 157 CAEGKNSRFRNSLSLKTINYAFEQGFIVCNINHSKHHRN-TAIEHFCTNGPFAILPMYGG 215
Query: 285 FSS-LVWATTPENAKALLQMPGESFVDALN---SEFNKPAELNESI 326
+SS +VW E A+ + +P E F L S+F E+N I
Sbjct: 216 YSSSIVWTEKYEMAQLIQNLPIEEFTKLLQEKCSDFLGKIEVNSKI 261
Score = 120 (47.3 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 28/100 (28%), Positives = 51/100 (51%)
Query: 382 LLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLP 441
++GD+AH IHP+AGQG+NLG D+ LV++ + G IG L + ++ R +N+
Sbjct: 281 IIGDAAHAIHPVAGQGLNLGIRDVGILVEIIEKYHKLGSDIGQRFILQEIDNRRLLDNVS 340
Query: 442 VMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
+ + ++ + +K+ +V +K IL
Sbjct: 341 MSFVCTGINSIFSNDSAILKVARRATMSVVEMSPTLKKIL 380
>POMBASE|SPAC17G6.16c [details] [associations]
symbol:ysh1 "mRNA cleavage and polyadenylation
specificity factor complex endoribonuclease subunit Ysh1"
species:4896 "Schizosaccharomyces pombe" [GO:0004521
"endoribonuclease activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IC]
[GO:0006379 "mRNA cleavage" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 PomBase:SPAC17G6.16c Pfam:PF07521 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0006378
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
OrthoDB:EOG41ZJK7 PIR:T37848 RefSeq:NP_594263.2 STRING:O13794
EnsemblFungi:SPAC17G6.16c.1 GeneID:2542258 NextBio:20803322
Uniprot:O13794
Length = 757
Score = 226 (84.6 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 45/103 (43%), Positives = 60/103 (58%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISH 68
LGAG +VGRSC ++ GK +MLD G+H Y P F +D L+ISH
Sbjct: 24 LGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFD-----LSTVDVLLISH 78
Query: 69 FHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
FHLDH +LPY + + G ++MTHPTKA+ LL D+ K+S
Sbjct: 79 FHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVS 121
Score = 44 (20.5 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 328 VATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAA 364
+A + T+ +E +LS +++ PR M+VEE S AA
Sbjct: 370 MAKQITNEPIEIVSLS--GQKI--PRRMAVEELSFAA 402
>UNIPROTKB|C9JZH6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 GO:GO:0003723
GO:GO:0004521 GO:GO:0008409 EMBL:AC080162 HGNC:HGNC:2326
ChiTaRS:CPSF3 IPI:IPI00807384 ProteinModelPortal:C9JZH6 SMR:C9JZH6
STRING:C9JZH6 Ensembl:ENST00000475482 HOGENOM:HOG000191757
ArrayExpress:C9JZH6 Bgee:C9JZH6 Uniprot:C9JZH6
Length = 136
Score = 196 (74.1 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 48/129 (37%), Positives = 68/129 (52%)
Query: 30 MLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGP 89
MLDCG+H G P I P ID L+ISHFHLDHCGALP+F + + G
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAE-----IDLLLISHFHLDHCGALPWFLQKTSFKGR 55
Query: 90 IYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS---QMNILKIQILKYVMIKGTS--KV 144
+MTH TKAI LL D+ K+S D +T + ++ KI+ + + +K + K
Sbjct: 56 TFMTHATKAIYRWLLSDYVKVS-NISADDMLYTETDLEESMDKIETINFHEVKEVAGIKF 114
Query: 145 WGHSSDDLL 153
W + + +L
Sbjct: 115 WCYHAGHVL 123
>TIGR_CMR|CPS_3568 [details] [associations]
symbol:CPS_3568
"2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006744
"ubiquinone biosynthetic process" evidence=ISS] [GO:0016709
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, NAD(P)H as one
donor, and incorporation of one atom of oxygen" evidence=ISS]
InterPro:IPR003042 InterPro:IPR010971 PRINTS:PR00420
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 eggNOG:COG0654
GO:GO:0006744 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016709
TIGRFAMs:TIGR01988 HOGENOM:HOG000255771 KO:K03184
RefSeq:YP_270236.1 ProteinModelPortal:Q47Y84 STRING:Q47Y84
GeneID:3521231 KEGG:cps:CPS_3568 PATRIC:21470067 OMA:RYRDNQL
BioCyc:CPSY167879:GI48-3590-MONOMER Uniprot:Q47Y84
Length = 401
Score = 203 (76.5 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 63/222 (28%), Positives = 107/222 (48%)
Query: 265 TAWQRFTPSGTVALLPLSDEFSSLVWAT-TPENAKALLQMPGESFVDALNSE--FNKPAE 321
T W + S + + S + W +P A L +PG+S + S +++ E
Sbjct: 181 TGWD-YQQSAMLINVETSMCQQDITWQKFSPTGPVAFLPLPGQSPLGGYASLVWYHQRDE 239
Query: 322 LNESIQVA-TKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGC 380
+ ++ ++ VL+ F G+ +V+ ++ F L H+ Y
Sbjct: 240 ITRLASLSNSQLQQEVLKCFPAQLGDIKVL----------AKGDFSLTRRHANTYQHKRV 289
Query: 381 ALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPES-LTKYESIRQREN 439
LLGD+AH I+P+AGQGVNLGF D+ L + AE++ NG H E+ L +YE +R+++N
Sbjct: 290 LLLGDAAHTINPMAGQGVNLGFKDVLALQHVIAEAIGNG-EAWHDEAVLVRYEKMRRKDN 348
Query: 440 LPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
L +M ++D +Y + +K NL VN V + S +
Sbjct: 349 LLMMSTMDALYAGFSHPSPLIKAARNLALLAVNKVPVLNSTI 390
Score = 182 (69.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 55/194 (28%), Positives = 90/194 (46%)
Query: 144 VWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELPE 202
VW + S EFN Q + +IVEN LI A+ +++ + NI + + +
Sbjct: 83 VWEYESA-YTEFNADDIEQSHLGHIVENRLIQLALWQQVTAMSNIHTYCPESLLSLNQDD 141
Query: 203 QPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPP 262
NN + + KL++G DGA+S+VR + + W Y Q ++ V+ S
Sbjct: 142 DSGNNRATLTLTNSVVTAKLVIGADGAQSKVRQMSAIGMTGWDYQQSAMLINVETSMCQQ 201
Query: 263 NRTAWQRFTPSGTVALLPLSDE-----FSSLVWATTPENAKALLQMPGESFVDALNSEFN 317
+ T WQ+F+P+G VA LPL + ++SLVW + L + + F
Sbjct: 202 DIT-WQKFSPTGPVAFLPLPGQSPLGGYASLVWYHQRDEITRLASLSNSQLQQEVLKCF- 259
Query: 318 KPAELNESIQVATK 331
PA+L + I+V K
Sbjct: 260 -PAQLGD-IKVLAK 271
>SGD|S000004267 [details] [associations]
symbol:YSH1 "Putative endoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0006379 "mRNA
cleavage" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0031126 "snoRNA 3'-end
processing" evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0034247 "snoRNA splicing" evidence=IMP] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA;IPI] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0004521 "endoribonuclease activity"
evidence=ISS;IMP] [GO:0003723 "RNA binding" evidence=IC]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 SGD:S000004267
Pfam:PF07521 GO:GO:0046872 GO:GO:0006378 EMBL:BK006945
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 EMBL:U17245 HOGENOM:HOG000203394 KO:K14403
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0031126 GO:GO:0034247
OMA:EISFAAH OrthoDB:EOG41ZJK7 PIR:S51413 RefSeq:NP_013379.1
ProteinModelPortal:Q06224 SMR:Q06224 DIP:DIP-2470N IntAct:Q06224
MINT:MINT-375457 STRING:Q06224 PaxDb:Q06224 PeptideAtlas:Q06224
EnsemblFungi:YLR277C GeneID:850983 KEGG:sce:YLR277C CYGD:YLR277c
NextBio:967501 Genevestigator:Q06224 GermOnline:YLR277C
Uniprot:Q06224
Length = 779
Score = 213 (80.0 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 53/157 (33%), Positives = 76/157 (48%)
Query: 5 KVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCL 64
K LG +VGRSC ++ GK +MLD G+H Y P + +D L
Sbjct: 10 KFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFD-----LSKVDIL 64
Query: 65 IISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQ 124
+ISHFHLDH +LPY + + G ++MTHPTKAI LL DF +++ S+ T
Sbjct: 65 LISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKD 124
Query: 125 MNILKIQILKYVMIKGTSKVWGHSSDDL--LEFNKAH 159
+ + L K V HS+ D+ ++F H
Sbjct: 125 EGLFSDEDLVDSFDK-IETVDYHSTVDVNGIKFTAFH 160
Score = 41 (19.5 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 343 STGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYI 376
S N ++ PR VEE S AA + F ++ +I
Sbjct: 386 SINNPEITIPRRCQVEEISFAAH-VDFQENLEFI 418
>CGD|CAL0005344 [details] [associations]
symbol:orf19.5486 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0004521 "endoribonuclease
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034247 "snoRNA splicing"
evidence=IEA] [GO:0031126 "snoRNA 3'-end processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006369 "termination
of RNA polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 CGD:CAL0005344 Pfam:PF07521 GO:GO:0005634
GO:GO:0042493 GO:GO:0046872 GO:GO:0006397 GO:GO:0090305
GO:GO:0004519 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACQ01000196 EMBL:AACQ01000195
RefSeq:XP_711478.1 RefSeq:XP_711502.1 ProteinModelPortal:Q59P50
STRING:Q59P50 GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 199 (75.1 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 41/103 (39%), Positives = 60/103 (58%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISH 68
LG +VGRSC ++ K IMLD GMH FP F + ++ +D L+ISH
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFD----EYDISK-VDILLISH 159
Query: 69 FHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
FH+DH +LPY + + G ++MTH TKAI L++DF +++
Sbjct: 160 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVT 202
>UNIPROTKB|Q59P50 [details] [associations]
symbol:YSH1 "Endoribonuclease YSH1" species:237561 "Candida
albicans SC5314" [GO:0042493 "response to drug" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 CGD:CAL0005344
Pfam:PF07521 GO:GO:0005634 GO:GO:0042493 GO:GO:0046872
GO:GO:0006397 GO:GO:0090305 GO:GO:0004519 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:AACQ01000196 EMBL:AACQ01000195 RefSeq:XP_711478.1
RefSeq:XP_711502.1 ProteinModelPortal:Q59P50 STRING:Q59P50
GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 199 (75.1 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 41/103 (39%), Positives = 60/103 (58%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISH 68
LG +VGRSC ++ K IMLD GMH FP F + ++ +D L+ISH
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFD----EYDISK-VDILLISH 159
Query: 69 FHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
FH+DH +LPY + + G ++MTH TKAI L++DF +++
Sbjct: 160 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVT 202
>ASPGD|ASPL0000060573 [details] [associations]
symbol:AN0990 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0006397 GO:GO:0090305 GO:GO:0004519
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACD01000015 RefSeq:XP_658594.1
ProteinModelPortal:Q5BEP0 STRING:Q5BEP0
EnsemblFungi:CADANIAT00001661 GeneID:2876766 KEGG:ani:AN0990.2
OMA:EISFAAH OrthoDB:EOG41ZJK7 Uniprot:Q5BEP0
Length = 884
Score = 198 (74.8 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 41/98 (41%), Positives = 53/98 (54%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISH 68
LG G +VGRSC ++ GK +MLD GMH P F +D L+ISH
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFD-----LSTVDILLISH 83
Query: 69 FHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLED 106
FH+DH ALPY + G ++MTH TKAI L++D
Sbjct: 84 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQD 121
>UNIPROTKB|G5E9W3 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:CH471053 GO:GO:0003723 GO:GO:0004521
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 GO:GO:0008409
EMBL:AC080162 UniGene:Hs.515972 HGNC:HGNC:2326 ChiTaRS:CPSF3
ProteinModelPortal:G5E9W3 SMR:G5E9W3 PRIDE:G5E9W3
Ensembl:ENST00000460593 ArrayExpress:G5E9W3 Bgee:G5E9W3
Uniprot:G5E9W3
Length = 647
Score = 196 (74.1 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 48/129 (37%), Positives = 68/129 (52%)
Query: 30 MLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGP 89
MLDCG+H G P I P ID L+ISHFHLDHCGALP+F + + G
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAE-----IDLLLISHFHLDHCGALPWFLQKTSFKGR 55
Query: 90 IYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS---QMNILKIQILKYVMIKGTS--KV 144
+MTH TKAI LL D+ K+S D +T + ++ KI+ + + +K + K
Sbjct: 56 TFMTHATKAIYRWLLSDYVKVS-NISADDMLYTETDLEESMDKIETINFHEVKEVAGIKF 114
Query: 145 WGHSSDDLL 153
W + + +L
Sbjct: 115 WCYHAGHVL 123
>GENEDB_PFALCIPARUM|PF14_0364 [details] [associations]
symbol:PF14_0364 "cleavage and polyadenylation
specifity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0006379 "mRNA cleavage"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014187 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 RefSeq:XP_001348538.1 ProteinModelPortal:Q8IL83
PRIDE:Q8IL83 EnsemblProtists:PF14_0364:mRNA GeneID:811946
KEGG:pfa:PF14_0364 EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH
ProtClustDB:CLSZ2457730 Uniprot:Q8IL83
Length = 876
Score = 196 (74.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 39/110 (35%), Positives = 59/110 (53%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
MS I + LG +VGRSC+++ ++MLDCG+H + P +
Sbjct: 1 MSNINIVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLPIYDAYD-----ISK 55
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKI 110
+D +I+HFH+DH GALPY + G I+MT TK+I +L D+ +I
Sbjct: 56 VDLCLITHFHMDHSGALPYLINKTRFKGRIFMTEATKSICYLLWNDYARI 105
Score = 40 (19.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 111 SVEKKGDSNFFTS-QMNILKI-QIL-KYVMIKGTSKVWGHSS-DDLLEFNKAHNYQDRIS 166
+VE +N + Q+N+ QIL Y+ + H +++L+FN N + +
Sbjct: 780 NVEDSNTNNIYLDEQINLFSYDQILFDYISKIIAVDLKQHDEINEILKFNAKDNNNNDVQ 839
Query: 167 YIVEND 172
V+ D
Sbjct: 840 VFVDMD 845
>UNIPROTKB|Q8IL83 [details] [associations]
symbol:PF14_0364 "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014187
GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 RefSeq:XP_001348538.1
ProteinModelPortal:Q8IL83 PRIDE:Q8IL83
EnsemblProtists:PF14_0364:mRNA GeneID:811946 KEGG:pfa:PF14_0364
EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH ProtClustDB:CLSZ2457730
Uniprot:Q8IL83
Length = 876
Score = 196 (74.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 39/110 (35%), Positives = 59/110 (53%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
MS I + LG +VGRSC+++ ++MLDCG+H + P +
Sbjct: 1 MSNINIVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLPIYDAYD-----ISK 55
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKI 110
+D +I+HFH+DH GALPY + G I+MT TK+I +L D+ +I
Sbjct: 56 VDLCLITHFHMDHSGALPYLINKTRFKGRIFMTEATKSICYLLWNDYARI 105
Score = 40 (19.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 111 SVEKKGDSNFFTS-QMNILKI-QIL-KYVMIKGTSKVWGHSS-DDLLEFNKAHNYQDRIS 166
+VE +N + Q+N+ QIL Y+ + H +++L+FN N + +
Sbjct: 780 NVEDSNTNNIYLDEQINLFSYDQILFDYISKIIAVDLKQHDEINEILKFNAKDNNNNDVQ 839
Query: 167 YIVEND 172
V+ D
Sbjct: 840 VFVDMD 845
>UNIPROTKB|Q8EJC6 [details] [associations]
symbol:SO_0541 "RNA-metabolizing metallo-beta-lactamase
family protein" species:211586 "Shewanella oneidensis MR-1"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 OMA:MAVEYMS HOGENOM:HOG000244774
KO:K07576 RefSeq:NP_716177.2 ProteinModelPortal:Q8EJC6
DNASU:1168409 GeneID:1168409 KEGG:son:SO_0541 PATRIC:23520762
ProtClustDB:CLSK2516780 Uniprot:Q8EJC6
Length = 480
Score = 163 (62.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 41/113 (36%), Positives = 60/113 (53%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDD--RKFPDFKFIAPQGPVTDMIDCLII 66
LGA ++V SC LV++ GK+++LDCG+ G D R F F P T I +++
Sbjct: 8 LGAAREVTGSCHLVTVAGKHLLLDCGLIQGGKADELRNHEPFVF----DPQT--IVAVVL 61
Query: 67 SHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSN 119
SH H+DH G LP + G+ GPIY T + I+L+D + V +N
Sbjct: 62 SHAHIDHSGRLPLLVKA-GFDGPIYTHKATAELCAIMLKDAAMLQVRDTERTN 113
Score = 47 (21.6 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLS-ILMIES 545
G Q +V SG +G I QNPTL D + ++++ES
Sbjct: 178 GKSQKKIVFSGD--LGRA-GMPILQNPTLVDTADLVLMES 214
>TIGR_CMR|SO_0541 [details] [associations]
symbol:SO_0541 "metallo-beta-lactamase family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003824 "catalytic activity"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_716177.2
ProteinModelPortal:Q8EJC6 DNASU:1168409 GeneID:1168409
KEGG:son:SO_0541 PATRIC:23520762 ProtClustDB:CLSK2516780
Uniprot:Q8EJC6
Length = 480
Score = 163 (62.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 41/113 (36%), Positives = 60/113 (53%)
Query: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDD--RKFPDFKFIAPQGPVTDMIDCLII 66
LGA ++V SC LV++ GK+++LDCG+ G D R F F P T I +++
Sbjct: 8 LGAAREVTGSCHLVTVAGKHLLLDCGLIQGGKADELRNHEPFVF----DPQT--IVAVVL 61
Query: 67 SHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSN 119
SH H+DH G LP + G+ GPIY T + I+L+D + V +N
Sbjct: 62 SHAHIDHSGRLPLLVKA-GFDGPIYTHKATAELCAIMLKDAAMLQVRDTERTN 113
Score = 47 (21.6 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLS-ILMIES 545
G Q +V SG +G I QNPTL D + ++++ES
Sbjct: 178 GKSQKKIVFSGD--LGRA-GMPILQNPTLVDTADLVLMES 214
>TIGR_CMR|DET_1061 [details] [associations]
symbol:DET_1061 "metallo-beta-lactamase family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS HOGENOM:HOG000244774 KO:K07576
RefSeq:YP_181776.1 ProteinModelPortal:Q3Z7M3 STRING:Q3Z7M3
GeneID:3229629 KEGG:det:DET1061 PATRIC:21609167
ProtClustDB:CLSK2516599 BioCyc:DETH243164:GJNF-1062-MONOMER
Uniprot:Q3Z7M3
Length = 468
Score = 163 (62.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 40/111 (36%), Positives = 60/111 (54%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYH-DDRKFPDFKFIAPQGPVTDMID 62
I++ LGA ++V S L+ +++DCG++ DR + F+ I PQ +
Sbjct: 3 IEIQFLGAARNVTGSRYLIKTDHTQLLVDCGLYQERRLQDRNWQPFE-IPPQS-----LS 56
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVE 113
+IISH H+DHCG LP + G+AGP++ T T IA I L D K+ E
Sbjct: 57 AVIISHAHIDHCGLLPKLVKE-GFAGPVFATEATAEIARISLTDAGKLQEE 106
>UNIPROTKB|G3V2W8 [details] [associations]
symbol:COQ6 "Ubiquinone biosynthesis monooxygenase COQ6"
species:9606 "Homo sapiens" [GO:0005739 "mitochondrion"
evidence=IEA] GO:GO:0005739 EMBL:AC005480 HGNC:HGNC:20233
ProteinModelPortal:G3V2W8 SMR:G3V2W8 Ensembl:ENST00000555552
Bgee:G3V2W8 Uniprot:G3V2W8
Length = 110
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 30/98 (30%), Positives = 46/98 (46%)
Query: 486 MRTSMEKVTLLVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIES 545
+R + L+ W R+ + YDVV+SGGG++G +ACA+ + D IL++E+
Sbjct: 12 VRAAPHSGPLVSWR-RWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEA 70
Query: 546 GPEKXXXXXXXXXXXXXXXXXXXXXKQLFETIGAWDHI 583
GP+K L + GAWDHI
Sbjct: 71 GPKKVLEKLSETYSNRVSSISPGSAT-LLSSFGAWDHI 107
>TIGR_CMR|NSE_0384 [details] [associations]
symbol:NSE_0384 "ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family" species:222891 "Neorickettsia sennetsu
str. Miyayama" [GO:0004497 "monooxygenase activity" evidence=ISS]
[GO:0006744 "ubiquinone biosynthetic process" evidence=ISS]
InterPro:IPR003042 InterPro:IPR010971 PRINTS:PR00420
InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660 eggNOG:COG0654
GO:GO:0006744 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0016709
TIGRFAMs:TIGR01988 KO:K03185 RefSeq:YP_506273.1
ProteinModelPortal:Q2GE23 STRING:Q2GE23 GeneID:3932233
KEGG:nse:NSE_0384 PATRIC:22680833 HOGENOM:HOG000127301 OMA:PGETREH
ProtClustDB:CLSK2527849 BioCyc:NSEN222891:GHFU-409-MONOMER
Uniprot:Q2GE23
Length = 377
Score = 109 (43.4 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 46/177 (25%), Positives = 77/177 (43%)
Query: 149 SDDLLEFNKAH-NYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNN 207
S L F A N +SY+V N ++ D + K ++ +N Y K V + +
Sbjct: 82 SGSFLHFEGAQANLDFSMSYVVPNLVLQDILYKGID-INYGCTY-KNVCYSH------DR 133
Query: 208 VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAW 267
V++ F + + IE + +L +G S + + SY Q ++ ++ + + A
Sbjct: 134 VRVDF-ADKVIEGRYMLVAEGRYSNTAGLLGFKMIRSSYRQSCLICNLRSTGREHSNVAV 192
Query: 268 QRFTPSGTVALLPL--SDEFSSLVWATTPENAKALLQMPGESFVDALNS----EFNK 318
+ F SG ALLPL S EFS L+W A L + + F+ + EF K
Sbjct: 193 EMFLESGPFALLPLRKSTEFS-LIWTAKFPFANTLATIDEKEFLSEVQKISGIEFEK 248
Score = 94 (38.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 362 RAAFP--LGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNG 419
R +P L F + R GP L+GDSAH IHP+AGQG NL D+ L V N
Sbjct: 253 RVVYPIVLNFCMNPRK-GP-VMLIGDSAHGIHPVAGQGFNLAVYDLKDL-----HDVLNK 305
Query: 420 YPIGH-PESLTKYESIRQRENLPVM 443
Y + + E + Y R+R L ++
Sbjct: 306 YGLDNFDELIDAYLKRRKRSALSMV 330
>TIGR_CMR|SPO_3419 [details] [associations]
symbol:SPO_3419 "ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0006744 "ubiquinone biosynthetic process" evidence=ISS]
[GO:0016701 "oxidoreductase activity, acting on single donors with
incorporation of molecular oxygen" evidence=ISS] InterPro:IPR003042
InterPro:IPR010971 InterPro:IPR018168 PRINTS:PR00420
PROSITE:PS01304 InterPro:IPR002938 Pfam:PF01494 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0050660 GO:GO:0006744 GO:GO:0016709
TIGRFAMs:TIGR01988 HOGENOM:HOG000255771 KO:K03185
RefSeq:YP_168615.1 ProteinModelPortal:Q5LMZ3 GeneID:3192835
KEGG:sil:SPO3419 PATRIC:23380295 OMA:SIVWSER ProtClustDB:CLSK934154
Uniprot:Q5LMZ3
Length = 420
Score = 153 (58.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 35/116 (30%), Positives = 63/116 (54%)
Query: 359 EKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSN 418
E +R +PL + ++ AL+GD+AH +HP+AGQG+N G D+ L ++ +
Sbjct: 278 EGARFTYPLNLTVANAFVAERLALVGDAAHGMHPIAGQGLNAGLRDVGALAEVLILAARR 337
Query: 419 GYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILG-NLGFQLVNA 473
G IG L +Y+ R+ + + L+ D R++ S+ P+ LG ++G ++ A
Sbjct: 338 GEDIGAAPVLERYQQWRRFDTATLALATDAFNRLF-SNDNPLLRLGRDVGMGVIGA 392
Score = 147 (56.8 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 55/240 (22%), Positives = 99/240 (41%)
Query: 153 LEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKF 212
L F+ A + + Y+VE+ + A+ + + + + A + V +
Sbjct: 108 LHFDHAEIEEGPMGYMVEDRYLRRALLAAME--DAPRITRLNGAAVTAQQTDGTGVVLTL 165
Query: 213 ESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTP 272
G + L++G DG +S ++ + W Y Q +V + P + A Q F P
Sbjct: 166 ADGSHLRAGLVVGCDGRKSGTATRAGIKRTGWDYGQTALVCAIA-HERPHHGIAHQFFMP 224
Query: 273 SGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKF 332
G +A+LPL SS+VW+ E A + +P +++ L F L E +F
Sbjct: 225 PGPLAILPLPGNRSSIVWSERTEAAARINALPEAEYLEILRPRFGD--FLGEIRLEGARF 282
Query: 333 THNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPL---GFGHSVRYIGPGCALLGDSAHR 389
T+ + NL+ N V R+ V + + P+ G +R +G +L +A R
Sbjct: 283 TYPL----NLTVANA-FVAERLALVGDAAHGMHPIAGQGLNAGLRDVGALAEVLILAARR 337
>TIGR_CMR|CHY_2049 [details] [associations]
symbol:CHY_2049 "metallo-beta-lactamase family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 RefSeq:YP_360868.1
ProteinModelPortal:Q3AAG6 STRING:Q3AAG6 GeneID:3728507
KEGG:chy:CHY_2049 PATRIC:21277179 HOGENOM:HOG000244774 KO:K07576
OMA:GGRIVHH BioCyc:CHYD246194:GJCN-2048-MONOMER Uniprot:Q3AAG6
Length = 504
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 36/117 (30%), Positives = 64/117 (54%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYH--DDRKFPDFKFIAPQGPVTDMI 61
+++T GA V SC L ++ G ++DCG+ G +R + +F F P+ I
Sbjct: 1 MELTFFGAADTVTGSCYLFNVAGHKFLVDCGLFQGPKAIKERNYGEFPF-NPRE-----I 54
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLED---FRKISVEKK 115
+ ++++H H+DH G +P + G+ G IY T PT +A ++L D +++ VE+K
Sbjct: 55 EFILLTHAHIDHSGLIPKLVKK-GFKGTIYATEPTVDLAAVMLPDSGHVQEMEVERK 110
>DICTYBASE|DDB_G0292328 [details] [associations]
symbol:iliM "FAD-binding monooxygenase" species:44689
"Dictyostelium discoideum" [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
InterPro:IPR003042 PRINTS:PR00420 InterPro:IPR002938
dictyBase:DDB_G0292328 Pfam:PF01494 eggNOG:COG0654 GO:GO:0016491
GO:GO:0055114 EMBL:AAFI02000189 OMA:LPVSHTW RefSeq:XP_629710.1
ProteinModelPortal:Q54DD1 EnsemblProtists:DDB0184335 GeneID:8628624
KEGG:ddi:DDB_G0292328 InParanoid:Q54DD1 ProtClustDB:CLSZ2429439
Uniprot:Q54DD1
Length = 423
Score = 150 (57.9 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 68/248 (27%), Positives = 107/248 (43%)
Query: 197 HY-ELPEQPLNNVKI-KFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVAT 254
H+ L EQPL+ I F++G SI+ L++G DGA S++R +N + S GI
Sbjct: 134 HFISLEEQPLDGTTIVTFKNGTSIKADLVIGADGANSKIRPYVN----DISLKYSGITL- 188
Query: 255 VKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMP-GESFVDALN 313
++ P + + + LSDE +V N L E+++
Sbjct: 189 IEFEIENPKQVCPEIYDLVDNGLFYALSDEKGFIVQLKGDGNLIIYLSCKRDENWIKESG 248
Query: 314 SEFNKPAELNESIQVATKFTHNVLEFFNLSTGN--EQVVPPRVMSVEEKSRAAFPLGFGH 371
+F K E E I+ K +NVL ++ N + V P + +R + + F
Sbjct: 249 FDFKKK-EFKE-IKEFIK--NNVLSDWSDIYKNLLDNAVEPFI------TRPLYSIPFEP 298
Query: 372 SVRYIGPG-CALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTK 430
+ + L+GDSAH I P AG+G+N G D L+ E + + L K
Sbjct: 299 MIEWKSKSNITLIGDSAHTIVPYAGKGINEGMADSCDLIDCLFEVDNEEKEFNLHKRLNK 358
Query: 431 YESI-RQR 437
YES+ QR
Sbjct: 359 YESLMHQR 366
>TIGR_CMR|CBU_0075 [details] [associations]
symbol:CBU_0075 "2-octaprenyl-6-methoxyphenol hydroxylase"
species:227377 "Coxiella burnetii RSA 493" [GO:0006744 "ubiquinone
biosynthetic process" evidence=ISS] [GO:0008681
"2-octaprenyl-6-methoxyphenol hydroxylase activity" evidence=ISS]
InterPro:IPR003042 InterPro:IPR010971 InterPro:IPR011295
PRINTS:PR00420 InterPro:IPR002938 Pfam:PF01494 GO:GO:0050660
GO:GO:0006744 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0016709
TIGRFAMs:TIGR01988 HOGENOM:HOG000255770 KO:K03185 GO:GO:0008681
TIGRFAMs:TIGR01984 RefSeq:NP_819128.1 ProteinModelPortal:Q83F73
GeneID:1207945 KEGG:cbu:CBU_0075 PATRIC:17928829 OMA:RMGRFTH
ProtClustDB:CLSK913818 BioCyc:CBUR227377:GJ7S-77-MONOMER
Uniprot:Q83F73
Length = 410
Score = 147 (56.8 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 49/195 (25%), Positives = 87/195 (44%)
Query: 206 NNVKIKFES--GES-IECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPP 262
N+ ++ F + G+ ++ LL+ DG S R + + + ++ ++A +++ P
Sbjct: 141 NHAQVTFSTINGQQQLQADLLIAADGTHSTARRLLKIPVEEENRNEVALIALLRLK-QPH 199
Query: 263 NRTAWQRFTPSGTVALLPLSDEFSS-LVWATTPENAKALLQMPGESFVDALNSEFNKPAE 321
N A++RFT GT+ALLPL LVW A + Q+ + F L+ F
Sbjct: 200 NHIAYERFTSQGTLALLPLFQANQCRLVWTLPKTKADEIEQLSDDEFRAVLHRVFKPYIG 259
Query: 322 LNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPL---GFGHSVRYIGP 378
+S++ +F +L EQV P VM + S +P+ GF +R
Sbjct: 260 AIQSVERGKRFPLQML------IAQEQVRPSFVM-LGNASHTLYPIAAQGFNLGLRDAAV 312
Query: 379 GCALLGDSAHRIHPL 393
+L D+ ++ PL
Sbjct: 313 LSEVLIDARRQLKPL 327
>UNIPROTKB|Q74C32 [details] [associations]
symbol:GSU1843 "RNA exonuclease, beta-lactamase fold
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0004527 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_952893.1
ProteinModelPortal:Q74C32 GeneID:2688625 KEGG:gsu:GSU1843
PATRIC:22026545 OMA:CHIDHVG ProtClustDB:CLSK2516562
BioCyc:GSUL243231:GH27-1786-MONOMER Uniprot:Q74C32
Length = 475
Score = 145 (56.1 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 35/117 (29%), Positives = 63/117 (53%)
Query: 18 SCI-LVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGA 76
SC LV I++DCG+ G +D F FI P+ D + L+++H H+DHCG
Sbjct: 15 SCHELVISDNAAILIDCGLLQG-NDGAGGKRFPFI--DFPL-DRVKGLVLTHVHIDHCGR 70
Query: 77 LPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQIL 133
+P+ G+ GPI+ + + + P++LED K+ + + D + +N +K +++
Sbjct: 71 IPHLLGA-GFQGPIWCSEASALLLPLVLEDAVKVGITR--DEHLIARFLNAVKKRLV 124
>TIGR_CMR|GSU_1843 [details] [associations]
symbol:GSU_1843 "metallo-beta-lactamase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0004527
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_952893.1
ProteinModelPortal:Q74C32 GeneID:2688625 KEGG:gsu:GSU1843
PATRIC:22026545 OMA:CHIDHVG ProtClustDB:CLSK2516562
BioCyc:GSUL243231:GH27-1786-MONOMER Uniprot:Q74C32
Length = 475
Score = 145 (56.1 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 35/117 (29%), Positives = 63/117 (53%)
Query: 18 SCI-LVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGA 76
SC LV I++DCG+ G +D F FI P+ D + L+++H H+DHCG
Sbjct: 15 SCHELVISDNAAILIDCGLLQG-NDGAGGKRFPFI--DFPL-DRVKGLVLTHVHIDHCGR 70
Query: 77 LPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQIL 133
+P+ G+ GPI+ + + + P++LED K+ + + D + +N +K +++
Sbjct: 71 IPHLLGA-GFQGPIWCSEASALLLPLVLEDAVKVGITR--DEHLIARFLNAVKKRLV 124
>TAIR|locus:2172843 [details] [associations]
symbol:CPSF100 "cleavage and polyadenylation specificity
factor 100" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009793 "embryo development ending
in seed dormancy" evidence=NAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006306 "DNA methylation" evidence=RCA] [GO:0006342 "chromatin
silencing" evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0007267 "cell-cell
signaling" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 GO:GO:0009506 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006378 EMBL:AB005244 GO:GO:0003723
GO:GO:0016787 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 EMBL:AF283277 EMBL:AY034982
EMBL:BT004374 IPI:IPI00521104 RefSeq:NP_197776.1 UniGene:At.25191
ProteinModelPortal:Q9LKF9 SMR:Q9LKF9 IntAct:Q9LKF9 STRING:Q9LKF9
PaxDb:Q9LKF9 PRIDE:Q9LKF9 EnsemblPlants:AT5G23880.1 GeneID:832453
KEGG:ath:AT5G23880 TAIR:At5g23880 HOGENOM:HOG000264343
InParanoid:Q9LKF9 OMA:NNPFQFK PhylomeDB:Q9LKF9
ProtClustDB:CLSN2686300 Genevestigator:Q9LKF9 GermOnline:AT5G23880
GO:GO:0035194 Uniprot:Q9LKF9
Length = 739
Score = 142 (55.0 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 37/121 (30%), Positives = 61/121 (50%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMI 61
+ ++VTPL + LVS+ G N ++DCG ++D F D + P V I
Sbjct: 3 TSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCG----WND--LF-DTSLLEPLSRVASTI 55
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFF 121
D +++SH H GALPY + G + P+Y T P + + + D + +S ++ D + F
Sbjct: 56 DAVLLSHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYD-QFLSRKQVSDFDLF 114
Query: 122 T 122
T
Sbjct: 115 T 115
>DICTYBASE|DDB_G0270392 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation
specificity factor 100 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA;ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IEA;ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISS]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0270392 Pfam:PF07521 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006378 GO:GO:0003723 GO:GO:0016787
GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
OMA:NNPFQFK RefSeq:XP_646760.1 ProteinModelPortal:Q55BS1
STRING:Q55BS1 EnsemblProtists:DDB0233700 GeneID:8617733
KEGG:ddi:DDB_G0270392 ProtClustDB:CLSZ2431463 Uniprot:Q55BS1
Length = 784
Score = 141 (54.7 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 38/115 (33%), Positives = 53/115 (46%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMI 61
S IK T L +D C L+ + I+LDCG+ Y+ DF + P V I
Sbjct: 3 SIIKFTALSGAKDESPPCYLLEIDDFCILLDCGL--SYN-----LDFSLLEPLEKVAKKI 55
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDF--RKISVEK 114
D +++SH H G LPY +G G IY T P + + L D K+S E+
Sbjct: 56 DAVLLSHSDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYENKMSQEE 110
>UNIPROTKB|Q9KV92 [details] [associations]
symbol:VC_0264 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K07576 OMA:CHIDHVG PIR:F82345 RefSeq:NP_229920.1
ProteinModelPortal:Q9KV92 DNASU:2614470 GeneID:2614470
KEGG:vch:VC0264 PATRIC:20079570 ProtClustDB:CLSK2517501
Uniprot:Q9KV92
Length = 455
Score = 141 (54.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 38/132 (28%), Positives = 62/132 (46%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMI 61
+ ++V G V SC + G+ +++DCG+ G D+R +F +
Sbjct: 16 NNMEVVHHGGKASVTGSCHELRADGQALLIDCGLFQGA-DERPLA-VEFALGH------V 67
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISV--EKKGDSN 119
D LI++H H+DH G LP+ G PIY T T + P++LED K+ + K
Sbjct: 68 DALILTHAHIDHIGRLPWLLAA-GLKQPIYSTAATAELVPLMLEDGLKLQLGMSPKQSER 126
Query: 120 FFTSQMNILKIQ 131
T +L++Q
Sbjct: 127 VLTEVRRLLRVQ 138
Score = 38 (18.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 439 NLPVMLSIDLMYRVYRS 455
NLP++L + RV RS
Sbjct: 270 NLPIILDSPMAQRVTRS 286
>TIGR_CMR|VC_0264 [details] [associations]
symbol:VC_0264 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K07576 OMA:CHIDHVG
PIR:F82345 RefSeq:NP_229920.1 ProteinModelPortal:Q9KV92
DNASU:2614470 GeneID:2614470 KEGG:vch:VC0264 PATRIC:20079570
ProtClustDB:CLSK2517501 Uniprot:Q9KV92
Length = 455
Score = 141 (54.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 38/132 (28%), Positives = 62/132 (46%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMI 61
+ ++V G V SC + G+ +++DCG+ G D+R +F +
Sbjct: 16 NNMEVVHHGGKASVTGSCHELRADGQALLIDCGLFQGA-DERPLA-VEFALGH------V 67
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISV--EKKGDSN 119
D LI++H H+DH G LP+ G PIY T T + P++LED K+ + K
Sbjct: 68 DALILTHAHIDHIGRLPWLLAA-GLKQPIYSTAATAELVPLMLEDGLKLQLGMSPKQSER 126
Query: 120 FFTSQMNILKIQ 131
T +L++Q
Sbjct: 127 VLTEVRRLLRVQ 138
Score = 38 (18.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 439 NLPVMLSIDLMYRVYRS 455
NLP++L + RV RS
Sbjct: 270 NLPIILDSPMAQRVTRS 286
>TIGR_CMR|DET_0438 [details] [associations]
symbol:DET_0438 "metallo-beta-lactamase family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 InterPro:IPR004613 Pfam:PF00753
PIRSF:PIRSF004803 SMART:SM00849 Pfam:PF07521 GO:GO:0046872
GO:GO:0003723 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016788
InterPro:IPR011108 eggNOG:COG0595 HOGENOM:HOG000280201 KO:K12574
PANTHER:PTHR11203:SF22 TIGRFAMs:TIGR00649 OMA:FLVDSTN
RefSeq:YP_181182.1 ProteinModelPortal:Q3Z9B7 STRING:Q3Z9B7
GeneID:3230229 KEGG:det:DET0438 PATRIC:21607945
ProtClustDB:CLSK837476 BioCyc:DETH243164:GJNF-438-MONOMER
Uniprot:Q3Z9B7
Length = 551
Score = 133 (51.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/116 (26%), Positives = 57/116 (49%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHD----DRKFPDFKFIAPQGPVT 58
++K+ PLG ++G++ + V G I++DCG+ + D PD ++
Sbjct: 5 KLKIVPLGGLGEIGKNMMSVEYGEDIILIDCGLMFPEEEMLGIDLVIPDISYVLEN---R 61
Query: 59 DMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEK 114
+ + ++I+H H DH GALPY PIY T T+ + + L++ + + K
Sbjct: 62 EKVRGIVITHGHEDHIGALPYILPQINV--PIYCTKLTQGLISVKLKEAKLLHQTK 115
>UNIPROTKB|Q81SC3 [details] [associations]
symbol:BA_1737 "Metallo-beta-lactamase family protein"
species:1392 "Bacillus anthracis" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 SMART:SM00849 Pfam:PF07521
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 RefSeq:NP_844172.1
RefSeq:YP_018378.1 ProteinModelPortal:Q81SC3 IntAct:Q81SC3
DNASU:1086535 EnsemblBacteria:EBBACT00000009201
EnsemblBacteria:EBBACT00000014472 GeneID:1086535 GeneID:2817971
KEGG:ban:BA_1737 KEGG:bar:GBAA_1737 PATRIC:18781074
HOGENOM:HOG000087450 OMA:SQHERVN ProtClustDB:CLSK2516952
BioCyc:BANT261594:GJ7F-1754-MONOMER Uniprot:Q81SC3
Length = 419
Score = 131 (51.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 41/149 (27%), Positives = 66/149 (44%)
Query: 10 GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHF 69
GAG+ GRSC V I+ DCG++ Y D +P + V ++ + +SH
Sbjct: 8 GAGE-YGRSCYFVKNKETKILFDCGINRSYEDS--YPKI-----EREVVPFLEAVFLSHI 59
Query: 70 HLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKK-----GDSNFFTSQ 124
H DH LP + +GY I+ T TK P E +R +V + D N
Sbjct: 60 HEDHTMGLPLLAK-YGYKKKIWTTRYTKEQLPAYYEKWRNYNVTQGWNVPYNDQN--VKD 116
Query: 125 MNILKIQIL----KYVMIKGTSKV-WGHS 148
+N + + + +++ I T + WG+S
Sbjct: 117 LNYIYVDEISNPNEWIQITPTLRFQWGYS 145
>TIGR_CMR|BA_1737 [details] [associations]
symbol:BA_1737 "metallo-beta-lactamase family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 SMART:SM00849 Pfam:PF07521
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 RefSeq:NP_844172.1
RefSeq:YP_018378.1 ProteinModelPortal:Q81SC3 IntAct:Q81SC3
DNASU:1086535 EnsemblBacteria:EBBACT00000009201
EnsemblBacteria:EBBACT00000014472 GeneID:1086535 GeneID:2817971
KEGG:ban:BA_1737 KEGG:bar:GBAA_1737 PATRIC:18781074
HOGENOM:HOG000087450 OMA:SQHERVN ProtClustDB:CLSK2516952
BioCyc:BANT261594:GJ7F-1754-MONOMER Uniprot:Q81SC3
Length = 419
Score = 131 (51.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 41/149 (27%), Positives = 66/149 (44%)
Query: 10 GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHF 69
GAG+ GRSC V I+ DCG++ Y D +P + V ++ + +SH
Sbjct: 8 GAGE-YGRSCYFVKNKETKILFDCGINRSYEDS--YPKI-----EREVVPFLEAVFLSHI 59
Query: 70 HLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKK-----GDSNFFTSQ 124
H DH LP + +GY I+ T TK P E +R +V + D N
Sbjct: 60 HEDHTMGLPLLAK-YGYKKKIWTTRYTKEQLPAYYEKWRNYNVTQGWNVPYNDQN--VKD 116
Query: 125 MNILKIQIL----KYVMIKGTSKV-WGHS 148
+N + + + +++ I T + WG+S
Sbjct: 117 LNYIYVDEISNPNEWIQITPTLRFQWGYS 145
>WB|WBGene00017313 [details] [associations]
symbol:cpsf-2 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 132 (51.5 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 41/148 (27%), Positives = 63/148 (42%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMI 61
S IK+ +D G C L+ + G I+LDCG D +F ++ P I
Sbjct: 3 SIIKLKVFSGAKDEGPLCYLLQVDGDYILLDCGW------DERF-GLQYFEELKPFIPKI 55
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLED--FRKISVEKKGDSN 119
++ISH H G LPY G P+Y T P + + + D + + VE+
Sbjct: 56 SAVLISHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEFEHYT 115
Query: 120 FFTSQMNILKIQILKY---VMIKGTSKV 144
K++ +KY V++KG S V
Sbjct: 116 LDDVDTAFEKVEQVKYNQTVVLKGDSGV 143
>UNIPROTKB|O17403 [details] [associations]
symbol:cpsf-2 "Probable cleavage and polyadenylation
specificity factor subunit 2" species:6239 "Caenorhabditis elegans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 132 (51.5 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 41/148 (27%), Positives = 63/148 (42%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMI 61
S IK+ +D G C L+ + G I+LDCG D +F ++ P I
Sbjct: 3 SIIKLKVFSGAKDEGPLCYLLQVDGDYILLDCGW------DERF-GLQYFEELKPFIPKI 55
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLED--FRKISVEKKGDSN 119
++ISH H G LPY G P+Y T P + + + D + + VE+
Sbjct: 56 SAVLISHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEFEHYT 115
Query: 120 FFTSQMNILKIQILKY---VMIKGTSKV 144
K++ +KY V++KG S V
Sbjct: 116 LDDVDTAFEKVEQVKYNQTVVLKGDSGV 143
>UNIPROTKB|E5RK47 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9606
"Homo sapiens" [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0032039 "integrator complex" evidence=IEA] InterPro:IPR027074
PANTHER:PTHR11203:SF2 EMBL:AC040975 EMBL:AC131969 HGNC:HGNC:25592
ChiTaRS:INTS9 IPI:IPI00976000 ProteinModelPortal:E5RK47 SMR:E5RK47
Ensembl:ENST00000518510 ArrayExpress:E5RK47 Bgee:E5RK47
Uniprot:E5RK47
Length = 170
Score = 106 (42.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 49 KFIAPQGPVTDM--IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLED 106
+F P+ + D+ +D ++IS++H ALPY TE G+ G +Y T PT I +L+E+
Sbjct: 82 EFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLMEE 139
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 19 CILVSMGGKNIMLDCGMHM 37
C ++ IMLDCG+ M
Sbjct: 14 CNVLKFKSTTIMLDCGLDM 32
>TIGR_CMR|NSE_0829 [details] [associations]
symbol:NSE_0829 "metallo-beta-lactamase family, beta-CASP
subfamily" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR001279
InterPro:IPR004613 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:CP000237 GenomeReviews:CP000237_GR
InterPro:IPR011108 eggNOG:COG0595 PANTHER:PTHR11203:SF22
HOGENOM:HOG000280200 RefSeq:YP_506699.1 ProteinModelPortal:Q2GCU7
STRING:Q2GCU7 GeneID:3931644 KEGG:nse:NSE_0829 PATRIC:22681653
KO:K07021 OMA:MRDDDKL ProtClustDB:CLSK2528128
BioCyc:NSEN222891:GHFU-835-MONOMER Uniprot:Q2GCU7
Length = 542
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 35/95 (36%), Positives = 48/95 (50%)
Query: 8 PLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHD------DRKFPDFKFIAPQGPVTDMI 61
PLG ++G + L G+ IM+DCG G+ D D D FI + D++
Sbjct: 10 PLGGTGEIGMNVTLYGYKGRWIMIDCGA--GFADAELPGIDIVVADISFIEERKD--DLL 65
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPT 96
+II+H H DHCGALPY + A P+Y T T
Sbjct: 66 -AIIITHIHEDHCGALPYLWDRL--AVPVYTTQFT 97
>WB|WBGene00011088 [details] [associations]
symbol:R07B7.4 species:6239 "Caenorhabditis elegans"
[GO:0008152 "metabolic process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR003042 PRINTS:PR00420
InterPro:IPR002938 Pfam:PF01494 eggNOG:COG0654 GO:GO:0016491
GO:GO:0055114 HOGENOM:HOG000251788 EMBL:Z75955
GeneTree:ENSGT00390000000747 RefSeq:NP_001129902.1 UniGene:Cel.2876
ProteinModelPortal:B5BM30 SMR:B5BM30 STRING:B5BM30
EnsemblMetazoa:R07B7.4b GeneID:187655 KEGG:cel:CELE_R07B7.4
CTD:187655 WormBase:R07B7.4b InParanoid:B5BM30 OMA:FNCKATK
NextBio:936026 ArrayExpress:B5BM30 Uniprot:B5BM30
Length = 445
Score = 114 (45.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 55/199 (27%), Positives = 87/199 (43%)
Query: 314 SEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSV 373
SEF + L ++ F +N E F + G + + R K +A + V
Sbjct: 235 SEFE--SNLVGPVESVLFFKNNFYEIFKI-LGEDHI---RNTIARNKPQAIISVQCSQHV 288
Query: 374 RYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTK-YE 432
+ L+GD+AH + P GQGVN GF D CLV + + + Y E + K Y
Sbjct: 289 FF--DKLVLMGDAAHAMVPFNGQGVNCGFED--CLV---LQEIMDQYEEDELEDVIKEYS 341
Query: 433 SIRQRE-NLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRP-IKSILCDIFMRTSM 490
+R E N+ + D+ +LT + G+LG+ + +R IK +LC IF +
Sbjct: 342 KVRTNETNIINQMEWDV-----NLTLTS-SVHGSLGW--IREIRAHIKLLLCFIFPSS-- 391
Query: 491 EKVTLLVWNARYYSSLGGK 509
TL ++ YS + K
Sbjct: 392 --FTLAAFSREKYSEIARK 408
Score = 56 (24.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 28/122 (22%), Positives = 57/122 (46%)
Query: 128 LKIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNI 187
++ QI + KG K +DD +F N Q+ +S I+ N+ +K N N+
Sbjct: 75 IRDQIAHFGDTKGKLKRLPVLNDD--DFILTINRQE-LSQILINE------AEKYN--NV 123
Query: 188 DIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYD 247
+ K ++L + L + ++ +++ L L DGA S +R ++ ++ +++
Sbjct: 124 KFHFNCKATKFDLKSESL--IVQNSDNLSTVDGDLFLACDGAHSSIRRSL-LKAPGFNFS 180
Query: 248 QK 249
QK
Sbjct: 181 QK 182
>UNIPROTKB|H0YBH8 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9606
"Homo sapiens" [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0032039 "integrator complex" evidence=IEA] InterPro:IPR027074
PANTHER:PTHR11203:SF2 EMBL:AC040975 EMBL:AC131969 HGNC:HGNC:25592
ChiTaRS:INTS9 Ensembl:ENST00000524081 Uniprot:H0YBH8
Length = 223
Score = 113 (44.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 39/136 (28%), Positives = 69/136 (50%)
Query: 49 KFIAPQGPVTDM--IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLED 106
+F P+ + D+ +D ++IS++H ALPY TE G+ G +Y T PT I +L
Sbjct: 74 EFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLPSP 131
Query: 107 FRKISVEKKGDSNFFTSQ-MN--ILKIQILKY---VMIKGTSKVWGHSSDDLLEFNK--A 158
K +VE +T Q +N + KIQ++ Y + + G +V SS L +
Sbjct: 132 L-KDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSSNWII 190
Query: 159 HNYQDRISYIVENDLI 174
++ +++SY+ + L+
Sbjct: 191 QSHYEKVSYVSGSSLL 206
Score = 45 (20.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 19 CILVSMGGKNIMLDCGMHM 37
C ++ IMLDCG+ M
Sbjct: 6 CNVLKFKSTTIMLDCGLDM 24
>FB|FBgn0027873 [details] [associations]
symbol:Cpsf100 "Cleavage and polyadenylation specificity
factor 100" species:7227 "Drosophila melanogaster" [GO:0006379
"mRNA cleavage" evidence=ISS;NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=NAS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE014297 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 OMA:NNPFQFK
GO:GO:0006398 EMBL:AF160933 RefSeq:NP_651658.1 RefSeq:NP_733264.1
UniGene:Dm.1362 ProteinModelPortal:Q9V3D6 SMR:Q9V3D6 IntAct:Q9V3D6
STRING:Q9V3D6 PaxDb:Q9V3D6 PRIDE:Q9V3D6 EnsemblMetazoa:FBtr0085357
GeneID:43426 KEGG:dme:Dmel_CG1957 UCSC:CG1957-RA CTD:43426
FlyBase:FBgn0027873 InParanoid:Q8IML7 OrthoDB:EOG4XD261
PhylomeDB:Q9V3D6 GenomeRNAi:43426 NextBio:833860 Bgee:Q9V3D6
GermOnline:CG1957 Uniprot:Q9V3D6
Length = 756
Score = 123 (48.4 bits), Expect = 0.00049, P = 0.00049
Identities = 41/137 (29%), Positives = 59/137 (43%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMI 61
S IK+ + D C ++ + I+LDCG D KF D FI +
Sbjct: 3 SIIKLHTISGAMDESPPCYILQIDDVRILLDCGW------DEKF-DANFIKELKRQVHTL 55
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFF 121
D +++SH H GALPY G PIY T P + + + D +S GD + F
Sbjct: 56 DAVLLSHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLY-MSHFNMGDFDLF 114
Query: 122 T-SQMNIL--KIQILKY 135
+ ++ KI LKY
Sbjct: 115 SLDDVDTAFEKITQLKY 131
>TIGR_CMR|CPS_2623 [details] [associations]
symbol:CPS_2623 "metallo-beta-lactamase family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000244774 KO:K07576 RefSeq:YP_269337.1
ProteinModelPortal:Q481D2 STRING:Q481D2 GeneID:3521490
KEGG:cps:CPS_2623 PATRIC:21468305 OMA:HGPMVII
ProtClustDB:CLSK2524370 BioCyc:CPSY167879:GI48-2685-MONOMER
Uniprot:Q481D2
Length = 451
Score = 118 (46.6 bits), Expect = 0.00083, P = 0.00083
Identities = 33/118 (27%), Positives = 56/118 (47%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
+ +T LG V S V I++DCG++ GY K+ + P +D
Sbjct: 1 MNITFLGGTGTVTGSKYFVETSTTKILVDCGLYQGY----KWLRARNREPLPLDLKSLDA 56
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFF 121
++++H HLDH G +P + G+ G +Y T ++ ILL D I ++ D+ F+
Sbjct: 57 IVLTHAHLDHSGFIPALYKQ-GFRGHVYAHQATISLCSILLPDSGHI---QEDDAKFY 110
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 595 574 0.00080 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 108
No. of states in DFA: 620 (66 KB)
Total size of DFA: 324 KB (2165 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.20u 0.08s 47.28t Elapsed: 00:00:20
Total cpu time: 47.22u 0.08s 47.30t Elapsed: 00:00:21
Start: Thu Aug 15 14:38:51 2013 End: Thu Aug 15 14:39:12 2013
WARNINGS ISSUED: 1