RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9964
(595 letters)
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6. This
model represents the monooxygenase responsible for the
4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 339 bits (872), Expect = e-111
Identities = 138/348 (39%), Positives = 204/348 (58%), Gaps = 11/348 (3%)
Query: 144 VWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKL---NTLNIDIVYQKKVAHYEL 200
VW S L+ F++ N ++ ++ I+END I +++ +L N N+ I+ ++ +
Sbjct: 90 VWDGCSLALIRFDRD-NGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTI 148
Query: 201 PEQPLNN----VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVK 256
P + N+ V I G+ + KLL+G DG+ S VR A N+ + W+Y+Q +VAT+K
Sbjct: 149 PSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLK 208
Query: 257 ISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEF 316
+ + N AWQRF P+G +ALLPL D S+LVW+T+PE A LL +P E FVDALN+ F
Sbjct: 209 LEEATENDVAWQRFLPTGPIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAF 268
Query: 317 NKPAELNESIQVATKFTHNVLEF--FNLSTGNEQV-VPPRVMSVEEKSRAAFPLGFGHSV 373
+ + + + E F VPPRV+ V +KSRAAFPLG GH+
Sbjct: 269 DLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHAD 328
Query: 374 RYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYES 433
Y+ AL+GD+AHR+HPLAGQGVNLGFGD+A LV+ AE+VS G IG SL YE
Sbjct: 329 EYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYER 388
Query: 434 IRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
R +N+ ++ +D ++++Y + PV L G L N + P+K+ +
Sbjct: 389 ERYAKNVVLLGLVDKLHKLYATDFPPVVALRTFGLNLTNYIGPLKNFI 436
Score = 104 bits (261), Expect = 7e-24
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSL----HFSKSSSYSNRVSSI 566
+DVVI GGG +G LA A+ NP KDL +L++++ L + YSNRVSSI
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSI 60
Query: 567 NSSSKQLFETIGAWDHIESTRTCTVDNM 594
+S F+ IGAWDHI+S R M
Sbjct: 61 TPASISFFKKIGAWDHIQSDRIQPFGRM 88
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 291 bits (748), Expect = 2e-93
Identities = 113/348 (32%), Positives = 173/348 (49%), Gaps = 39/348 (11%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPE 202
V S L F+ + + Y+VEN ++ A+ ++L L + ELP
Sbjct: 78 HVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQELPNRVTILCPARVVELPR 137
Query: 203 QPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPP 262
++V++ + G+ + +LL+G DGA S+VR + + W Y Q +VA VK P
Sbjct: 138 HS-DHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHER-PH 195
Query: 263 NRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAEL 322
TAW+RFTP+G +ALLPL D SSLVW PE A+ LL + E F+ L F + L
Sbjct: 196 QGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAF--GSRL 253
Query: 323 NESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCAL 382
V R AFPL H+ RY+ P AL
Sbjct: 254 GAITLV-------------------------------GERHAFPLSLTHAKRYVAPRLAL 282
Query: 383 LGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPV 442
+GD+AH IHPLAGQG+NLG D+A L ++ ++ G IG P L +YE R+ +N +
Sbjct: 283 IGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAM 342
Query: 443 MLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRTSM 490
+ + D + R++ + P+++L NLG +L+N + P+K+ + +M
Sbjct: 343 LGATDGLNRLFSNDFPPLRLLRNLGLRLLNNLPPLKN----FIAKQAM 386
Score = 90.0 bits (224), Expect = 2e-19
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSK 571
D+VI GGG +G LA A+A++ LK + +IE+ P L + NRVS+++++S
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLK---VALIEATP---LPAPADPGFDNRVSALSAASI 54
Query: 572 QLFETIGAWDHIESTRTCTVDNMK 595
+L E +G WD IE R + ++
Sbjct: 55 RLLEKLGVWDKIEPARAQPIRDIH 78
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 175 bits (447), Expect = 2e-49
Identities = 94/340 (27%), Positives = 142/340 (41%), Gaps = 60/340 (17%)
Query: 153 LEFNKAHNYQDRISYIVENDLI---IDAVTKKLNTLNIDIVYQKKVAHYELPEQPL---- 205
L F+ ++++IVE+ LI + A + L P +
Sbjct: 92 LHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTW------------FPARAQGLEV 139
Query: 206 --NNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPN 263
+ + G+ + L++G DGA S VR+ ++ Y Q G+VA K + P
Sbjct: 140 DPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFK-AERPHR 198
Query: 264 RTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELN 323
TA+Q F G +ALLPL D S+VW+ +A LL + P L
Sbjct: 199 GTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLALS--------------PEALA 244
Query: 324 ESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALL 383
++ A+ LE V P A FPL R + P AL+
Sbjct: 245 ARVERASGGRLGRLEC---------VTPA----------AGFPLRLQRVDRLVAPRVALV 285
Query: 384 GDSAHRIHPLAGQGVNLGFGDIACL--VQLSAESVSNGYPIGHPESLTKYESIRQRENLP 441
GD+AH IHPLAGQG+NLG D+A L V E + +G L +YE R+ + L
Sbjct: 286 GDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRD---LGDLRLLRRYERARREDILA 342
Query: 442 VMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
+ ++ D + R++ + L N G LV A+ +K L
Sbjct: 343 LQVATDGLQRLFALPGPLARWLRNAGMALVGALPLVKRWL 382
Score = 61.5 bits (150), Expect = 5e-10
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSS 569
++DVV+ GGG++G +LA A+AQ L + ++ ++ +RV +I+ S
Sbjct: 5 KFDVVVVGGGLVGASLALALAQ----SGLRVALLAPRAPPR---PADDAWDSRVYAISPS 57
Query: 570 SKQLFETIGAWDHIESTRTCTVDNM 594
S+ E +G W +++ R V +M
Sbjct: 58 SQAFLERLGVWQALDAARLAPVYDM 82
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 403
Score = 173 bits (441), Expect = 2e-48
Identities = 94/313 (30%), Positives = 157/313 (50%), Gaps = 37/313 (11%)
Query: 167 YIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGT 226
++VEN ++I+A+ K+ L ID+ V +E ++ V + G +E +LL+
Sbjct: 106 HMVENRVLINALRKRAEALGIDLREATSVTDFETRDE---GVTVTLSDGSVLEARLLVAA 162
Query: 227 DGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFS 286
DGARS++R ++ W Y Q GIV TV+ P A + F P+G A+LPL S
Sbjct: 163 DGARSKLRELAGIKTVGWDYGQSGIVCTVE-HERPHGGRAEEHFLPAGPFAILPLKGNRS 221
Query: 287 SLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGN 346
SLVW +A+ L+ + F L +F H + E
Sbjct: 222 SLVWTERTADAERLVALDDLVFEAELE----------------QRFGHRLGE-------- 257
Query: 347 EQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIA 406
+ V K R AFPLG + ++ P AL+GD+AH IHP+AGQG+NLG D+A
Sbjct: 258 --------LKVLGKRR-AFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVA 308
Query: 407 CLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNL 466
L ++ E+ G IG + L +Y+ R+ + + + ++ D++ R++ + T ++ + ++
Sbjct: 309 ALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDI 368
Query: 467 GFQLVNAVRPIKS 479
G LV+ + +KS
Sbjct: 369 GLGLVDRLPKLKS 381
Score = 54.2 bits (131), Expect = 1e-07
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSS 569
Q DVVI+GGG +G LA A+ Q L + ++++ P + S R S+I ++
Sbjct: 1 QCDVVIAGGGYVGLALAVALKQ--AAPHLPVTVVDAAPA------GAWSRDPRASAIAAA 52
Query: 570 SKQLFETIGAWDHIEST 586
++++ E +G WD I
Sbjct: 53 ARRMLEALGVWDEIAPE 69
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 171 bits (436), Expect = 8e-48
Identities = 89/256 (34%), Positives = 130/256 (50%), Gaps = 37/256 (14%)
Query: 213 ESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTP 272
GE I+ KL++G DGA SQVR + W Y Q ++ +VK +PP + WQ+FTP
Sbjct: 151 ADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCE-NPPGDSTWQQFTP 209
Query: 273 SGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKF 332
SG A LPL D ++SLVW +P + L M A+L + I
Sbjct: 210 SGPRAFLPLFDNWASLVWYDSPARIRQLQAMS--------------MAQLQQEIA----- 250
Query: 333 THNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHP 392
P R+ +V + AFPL H+++Y+ PG AL+GD+AH I+P
Sbjct: 251 ---------------AHFPARLGAVTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINP 295
Query: 393 LAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLS-IDLMYR 451
LAGQGVNLG+ D+ L+ + + S G L +Y+ R +NL +M S +DL Y
Sbjct: 296 LAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNL-LMQSGMDLFYA 354
Query: 452 VYRSSLTPVKILGNLG 467
+ ++L P++ NLG
Sbjct: 355 GFSNNLPPLRFARNLG 370
Score = 60.0 bits (146), Expect = 1e-09
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINS 568
+ D+ I GGGM+G LA +AQ+ S+ ++E F S R+S+I++
Sbjct: 4 QPTDIAIVGGGMVGAALALGLAQH----GFSVAVLEHAAPAP--FDADSQPDVRISAISA 57
Query: 569 SSKQLFETIGAWDHIESTRT 588
+S L + +G WD +++ R+
Sbjct: 58 ASVALLKGLGVWDAVQAMRS 77
>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 171 bits (434), Expect = 1e-47
Identities = 104/318 (32%), Positives = 154/318 (48%), Gaps = 44/318 (13%)
Query: 163 DRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECK 221
D++ YIVEN LI + ++ N+ ++ +K+A E N V + ESG IE K
Sbjct: 101 DQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEF-SAEGNRVTL--ESGAEIEAK 157
Query: 222 LLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPL 281
++G DGA SQVR + + W Y Q ++ V+ + P WQ+FTPSG + LPL
Sbjct: 158 WVIGADGANSQVRQLAGIGITAWDYRQHCMLINVE-TEQPQQDITWQQFTPSGPRSFLPL 216
Query: 282 SDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFN 341
SLVW +P+ K L M E + F PAEL E VL+
Sbjct: 217 CGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHF--PAELGE---------IKVLQH-- 263
Query: 342 LSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLG 401
+FPL H+ +Y+ C LLGD+AH I+PLAGQGVNLG
Sbjct: 264 ---------------------GSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLG 302
Query: 402 FGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVK 461
F D+ L+ + + + + S +YE R+ +NL + +DL Y+ + +SLTP+K
Sbjct: 303 FKDVDVLL-----AETEKQGVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLTPLK 357
Query: 462 ILGNLGFQLVNAVRPIKS 479
+ N +L P+K+
Sbjct: 358 FVRNAALKLAENSGPLKT 375
Score = 67.1 bits (164), Expect = 7e-12
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSIN 567
+YD+ + GGGM+G A A+ + S+ +IE G K+ F S RVS+I+
Sbjct: 1 MNKYDIAVVGGGMVGAATALGFAK----QGRSVAVIEGGEPKA--FEPSQPMDIRVSAIS 54
Query: 568 SSSKQLFETIGAWDHIESTRTC 589
+S L E++GAW I + R C
Sbjct: 55 QTSVDLLESLGAWSSIVAMRVC 76
>gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 405
Score = 168 bits (428), Expect = 1e-46
Identities = 104/352 (29%), Positives = 171/352 (48%), Gaps = 45/352 (12%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPE 202
+VW S + F+ A + + + +IVEN ++ DA+ ++L+ +I ++ A E
Sbjct: 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLAN---ARLEQMR 139
Query: 203 QPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPP 262
+ ++ + G + L++ DGA S VR W Y IV +V+ + P
Sbjct: 140 RSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVR-CSEPH 198
Query: 263 NRTAWQRFTPSGTVALLPLSDE----FSSLVWATTPENAKALLQMPGESFVDALNSEFNK 318
TAWQRFT G +A LPL + + S+VW+TTPE A+ L+ + ++F AL F
Sbjct: 199 RATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFE- 257
Query: 319 PAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGP 378
L E + PR+ PL H+ RY+ P
Sbjct: 258 -GRLGEVLS----------------------ADPRL---------CVPLRQRHAKRYVEP 285
Query: 379 GCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRE 438
G AL+GD+AH IHPLAGQGVNLGF D A L ++ + G + L+++E R
Sbjct: 286 GLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPH 345
Query: 439 NLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRTSM 490
NL +M +++ R++++ P++ L N G +LV+ + K+ +F+R ++
Sbjct: 346 NLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKA----LFVRQAL 393
Score = 61.4 bits (149), Expect = 5e-10
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSK 571
D++I G GM+G+ LA A+ + L +L+++ GP F + + RVS+++++S+
Sbjct: 4 DLLIVGAGMVGSALALALQGS----GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQ 59
Query: 572 QLFETIGAWDHIESTRTCTVDNMK 595
++ E +GAWD I + R M+
Sbjct: 60 RILERLGAWDGIAARRASPYSEMQ 83
>gnl|CDD|236341 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 163 bits (415), Expect = 7e-45
Identities = 102/350 (29%), Positives = 161/350 (46%), Gaps = 43/350 (12%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELP 201
+VW S +EF+ Q + +IVEN +I A+ +++ N+ ++ + +
Sbjct: 82 EVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVG 141
Query: 202 EQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSP 261
E + ++G+++ KL++G DGA S +R M++ ++W Y +VA V+ P
Sbjct: 142 ES---EAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTV-DP 197
Query: 262 PNRTAWQRFTPSGTVALLPLSDE-FSSLVWATTPENAKALLQMPGESFVDALNSEFNKPA 320
N A Q FTP G +A LP+S+ SS+VW+T P A+ALL M E F AL +EF+
Sbjct: 198 HNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRL 257
Query: 321 ELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGC 380
L E R AFPL ++ ++
Sbjct: 258 GLCEV---------------------------------VGERQAFPLKMRYARDFVRERV 284
Query: 381 ALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENL 440
AL+GD+AH IHPLAGQGVNLG D A L Q G IG +L YE R+ E
Sbjct: 285 ALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAA 344
Query: 441 PVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRTSM 490
++ ++ ++ S K++ +G L + K D M+ ++
Sbjct: 345 KMIAAMQGFRDLFSGSNPAKKLVRGIGMSLAGQLPGAK----DEIMKRAL 390
Score = 57.1 bits (138), Expect = 1e-08
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG-PEKSLHFSKSSSYSNRVSSINSSS 570
DV I GGGM+G LA A+ ++ DL I +IE PE++L + RVS+++ SS
Sbjct: 6 DVAIIGGGMVGLALAAALKES----DLRIAVIEGQLPEEAL----NELPDVRVSALSRSS 57
Query: 571 KQLFETIGAWDHIESTRTCTVDNMK 595
+ + +GAW IE+ R M+
Sbjct: 58 EHILRNLGAWQGIEARRAAPYIAME 82
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 159 bits (405), Expect = 2e-43
Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 45/346 (13%)
Query: 140 GTSKVWGHSSDD----LLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKK 194
G + DD LL F+ A + + Y+V +++A+ + L N+ + + +
Sbjct: 68 GVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAE 127
Query: 195 VAHYELPEQPLNNVKIKFES-GESIECKLLLGTDGARSQVRNAMNVQ-YSNWSYDQKGIV 252
V E V + GE+++ LL+G DGA S VR A + +S Y Q +V
Sbjct: 128 VEAVEQDGDG---VTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALV 184
Query: 253 ATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDAL 312
A V+ P A +RFT +G ALLPL D SS+VW+ P A+ L + E F+ L
Sbjct: 185 ANVEP-EEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLREL 243
Query: 313 NSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHS 372
+ L V SR+AFPL +
Sbjct: 244 QRRLGERDPLGRVTLV-------------------------------SSRSAFPLSLRVA 272
Query: 373 VRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYE 432
RY L+GD+AH +HPLAGQG NL D A L + A + G +L YE
Sbjct: 273 ERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYE 329
Query: 433 SIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
+ R+ + + R++ + + L NLG +L++ + P++
Sbjct: 330 ARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLPPLR 375
Score = 63.2 bits (154), Expect = 1e-10
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINS 568
K DV I G G G LA A+A+ L + ++E P + L R +++
Sbjct: 1 KMLDVAIVGAGPAGLALALALAR----AGLDVTLLERAPRELLERG-------RGIALSP 49
Query: 569 SSKQLFETIGAWDHIESTRTCTVD 592
++ + E +G WD +E+ +
Sbjct: 50 NALRALERLGLWDRLEALGVPPLH 73
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 160 bits (406), Expect = 2e-43
Identities = 86/272 (31%), Positives = 130/272 (47%), Gaps = 35/272 (12%)
Query: 208 VKIKFESGE-SIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTA 266
V ++ E + +++ KL++ DGARS +R A ++ W Y Q + ATVK +P N A
Sbjct: 157 VTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHE-APHNDIA 215
Query: 267 WQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESI 326
++RF PSG A+LPL +VW AKALL +P F+ L + +L +
Sbjct: 216 YERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRY--GDQLGK-- 271
Query: 327 QVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDS 386
LE + FP+ S RY+ AL+GD+
Sbjct: 272 ----------LELLG---------DRFL----------FPVQLMQSDRYVQHRLALVGDA 302
Query: 387 AHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSI 446
AH HP+ GQG+NLG D A L Q+ + G IG L +YE R+REN ++
Sbjct: 303 AHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFT 362
Query: 447 DLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
DL+ R++ + P+ ++ LG L+ V P+K
Sbjct: 363 DLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLK 394
Score = 57.7 bits (140), Expect = 7e-09
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 504 SSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKD--LSILMIESGPEKSLHFSKSSSYSN 561
S YDV I GGG++G TLA A LKD L I +IE+ P +K +Y
Sbjct: 12 PSTRSLTYDVAIVGGGIVGLTLAAA------LKDSGLRIALIEAQP-AEAAAAKGQAY-- 62
Query: 562 RVSSINSSSKQLFETIGAWDHI 583
+++ S ++FE IG W+ I
Sbjct: 63 ---ALSLLSARIFEGIGVWEKI 81
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 155 bits (393), Expect = 5e-42
Identities = 87/342 (25%), Positives = 145/342 (42%), Gaps = 48/342 (14%)
Query: 147 HSSDD----LLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELP 201
H SD + + Y+VE + A+ +L L NI + +
Sbjct: 76 HVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEII-R 134
Query: 202 EQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSP 261
Q + V++ ++G+ + KLL+ DGA S+VR +++ Y+Q ++A ++ P
Sbjct: 135 NQ--DYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHE-QP 191
Query: 262 PNRTAWQRFTPSGTVALLPLSDEF-SSLVWATTPENAKALLQMPGESFVDALNSEFNKPA 320
A++RFTP G +ALLPL D + SSLVW + A + +P F+ L F
Sbjct: 192 HQGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFG--- 248
Query: 321 ELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGC 380
K T V E R +PL + ++ P
Sbjct: 249 ------WRLGKITQ----------------------VGE--RKTYPLKLRIAETHVHPRV 278
Query: 381 ALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGY-PIGHPESLTKYESIRQREN 439
L+G++A +HP+AGQG NLG D+ L AE + + +G L +Y RQ +
Sbjct: 279 VLIGNAAQTLHPIAGQGFNLGLRDVETL----AEVLIDARIDLGTYALLQEYLRRRQFDQ 334
Query: 440 LPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
+ D + R++ + + ++ L NLG + P+K L
Sbjct: 335 FITIGLTDGLNRLFSNHIPLLRALRNLGLLALENFPPLKKRL 376
Score = 53.1 bits (128), Expect = 2e-07
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSK 571
DV+I GGG++G +LA A+++ L + I +IE+ + + R +++ SK
Sbjct: 1 DVIIVGGGLVGLSLALALSR---LGKIKIALIEANSPSAAQP----GFDARSLALSYGSK 53
Query: 572 QLFETIGAWDHIES 585
Q+ E +G W +
Sbjct: 54 QILEKLGLWPKLAP 67
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 153 bits (390), Expect = 2e-41
Identities = 81/291 (27%), Positives = 138/291 (47%), Gaps = 43/291 (14%)
Query: 194 KVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVA 253
+VA+ E Q +V++ + GE++ +LL+ DG+ S +R A+ + + Y+Q ++A
Sbjct: 135 RVANVE-RTQ--GSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIA 191
Query: 254 TVKISTS-PPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDAL 312
V +TS A++RFT G +ALLP+SD SLVW E+A+ +L F+ L
Sbjct: 192 NV--TTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAEL 249
Query: 313 NSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHS 372
F + TH G R+A+PL +
Sbjct: 250 QQAFG---------WRLGRITH---------AG---------------KRSAYPLALVTA 276
Query: 373 VRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYE 432
+ I AL+G++A +HP+AGQG NLG D+ L + ++++ G IG L +Y+
Sbjct: 277 AQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQ 336
Query: 433 SIRQ--RENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSIL 481
RQ RE + + D + R++ + P+ + NLG ++ + P + L
Sbjct: 337 QRRQQDREAT-IGFT-DGLVRLFANRWAPLVVGRNLGLMAMDLLPPARDWL 385
Score = 52.2 bits (126), Expect = 4e-07
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIE-SGPEKSLHFSKSSSYSNRVSSIN 567
+ DV+I GGGM G TLA A+++ + L + +IE PE H + R ++
Sbjct: 2 SRMDVIIVGGGMAGATLALALSRL-SHGGLPVALIEAFAPESDAH----PGFDARAIALA 56
Query: 568 SSSKQLFETIGAWDHIES 585
+ + Q +G W +
Sbjct: 57 AGTCQQLARLGVWQALAD 74
>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Validated.
Length = 392
Score = 152 bits (386), Expect = 6e-41
Identities = 96/312 (30%), Positives = 148/312 (47%), Gaps = 39/312 (12%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPE 202
+VW L F+ ++++ +IVENDL++D + L+ + + +V L E
Sbjct: 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVV--AL-E 140
Query: 203 QPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPP 262
Q + V+++ + G +E L + DGA S +R + S Y Q+G+VA V + P
Sbjct: 141 QDADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVD-TEHPH 199
Query: 263 NRTAWQRFTPSGTVALLPLSDEFSSLVWATTPE-NAKALLQMPGESFVDALNSEFNKPAE 321
TAWQRF P+G +ALLP +D SS+VW T P+ A+ +L + +F L F A
Sbjct: 200 QATAWQRFLPTGPLALLPFADGRSSIVW-TLPDAEAERVLALDEAAFSRELTQAFA--AR 256
Query: 322 LNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCA 381
L E ++VA+ R AFPL +Y+
Sbjct: 257 LGE-VRVAS------------------------------PRTAFPLRRQLVQQYVSGRVL 285
Query: 382 LLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLP 441
LGD+AH +HPLAGQGVNLG D+A L QL ++ + P L ++ R+ +N
Sbjct: 286 TLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTV 345
Query: 442 VMLSIDLMYRVY 453
D + RV+
Sbjct: 346 AAYGFDAINRVF 357
Score = 40.2 bits (94), Expect = 0.002
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSK 571
D VI GGG++G ACA+A LS+ ++E + RV + + +
Sbjct: 8 DAVIVGGGVVGA--ACALALADA--GLSVALVEGREPPRWQ---ADQPDLRVYAFAADNA 60
Query: 572 QLFETIGAWDHIESTRTCTVDNMK 595
L + +G W + + R M+
Sbjct: 61 ALLDRLGVWPAVRAARAQPYRRMR 84
>gnl|CDD|236139 PRK08013, PRK08013, oxidoreductase; Provisional.
Length = 400
Score = 136 bits (344), Expect = 5e-35
Identities = 101/350 (28%), Positives = 162/350 (46%), Gaps = 59/350 (16%)
Query: 144 VWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQ-----KKVAHY 198
VW S + F+ + +I+EN +I A+ +K + DI ++VA
Sbjct: 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSS-DITLLAPAELQQVAWG 141
Query: 199 ELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKIS 258
E N + + G + +L++G DGA S +RN ++ + W Y +VAT++ +
Sbjct: 142 E------NEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIR-T 194
Query: 259 TSPPNRTAWQRFTPSGTVALLPLSD-EFSSLVWATTPENAKALLQMPGESFVDALNSEFN 317
P + A Q F G +A LPLSD S+VW+ +PE A+ + Q P E F
Sbjct: 195 EEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEF--------- 245
Query: 318 KPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIG 377
N ++ +A F+ G ++ E R FPL ++ ++
Sbjct: 246 -----NRALAIA----------FDNRLGLCEL---------ESERQVFPLTGRYARQFAA 281
Query: 378 PGCALLGDSAHRIHPLAGQGVNLGFGDIACLV----QLSAESVSNGYPIGHPESLTKYES 433
AL+GD+AH IHPLAGQGVNLGF D A L+ +L + G IG L +YE
Sbjct: 282 HRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQ----GKDIGQHLYLRRYE- 336
Query: 434 IRQREN-LPVMLSIDLMYRVYRSSLTPV-KILGNLGFQLVNAVRPIKSIL 481
R R++ +ML+ +R + P K+L ++G +L + + +K L
Sbjct: 337 -RSRKHSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLKLADTLPGVKPQL 385
Score = 67.0 bits (164), Expect = 9e-12
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSS 570
DVVI+GGGM+G +AC + + L + ++E + L + + RVS+IN++S
Sbjct: 4 VDVVIAGGGMVGLAVACGLQGS----GLRVAVLEQRVPEPLAAD--APPALRVSAINAAS 57
Query: 571 KQLFETIGAWDHIESTRTCTVDNM 594
++L +G W I + R M
Sbjct: 58 EKLLTRLGVWQDILARRASCYHGM 81
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 117 bits (295), Expect = 2e-28
Identities = 78/348 (22%), Positives = 130/348 (37%), Gaps = 60/348 (17%)
Query: 143 KVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELP 201
KV S L F+ D + Y+V N LI A + ++ I+++ +V
Sbjct: 81 KVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD 140
Query: 202 EQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVK----- 256
+ ++ +G + +LL+ D S R + GI A +
Sbjct: 141 DD---GAQVTLANGRRLTARLLVAADSRFSATRRQL------------GIGADMHDFGRT 185
Query: 257 ------ISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVD 310
P + TAW+ F T+ALLPL+ SSLV P+ +ALL +
Sbjct: 186 MLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLALD------ 239
Query: 311 ALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFG 370
P + K + R++S SR A+PL
Sbjct: 240 --------PEAFAAEVTARFK--GRLGAM-------------RLVS----SRHAYPLVAV 272
Query: 371 HSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTK 430
++ R++ AL+GD+A +HP+ G NLG L +L + G IG L +
Sbjct: 273 YAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLER 332
Query: 431 YESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
YE + P+ + + + +Y P ++L + N P+K
Sbjct: 333 YERKHRLATRPLYHATNAIAALYTDDRPPARLLRRAVLRAANRFPPLK 380
Score = 43.0 bits (102), Expect = 4e-04
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSS 570
D+V+ G G G + A ++A + L + +IE P +L ++ R ++ +S
Sbjct: 4 SDIVVVGAGPAGLSFARSLAGS----GLKVTLIERQPLAAL---ADPAFDGREIALTHAS 56
Query: 571 KQLFETIGAWDHI 583
+++ + +GAWD I
Sbjct: 57 REILQRLGAWDRI 69
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold
involved in RNA processing [Translation, ribosomal
structure and biogenesis].
Length = 427
Score = 117 bits (295), Expect = 2e-28
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
+ + LGA ++VGRSC+L+ GG I+LDCG+ G P P +D
Sbjct: 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPSPE-RPLL-------PPFPKVDA 52
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKK 115
++++H HLDH GALPY G+ GP+Y T PT A+ +LL D K++
Sbjct: 53 VLLTHAHLDHIGALPYLVRN-GFEGPVYATPPTAALLKVLLGDSLKLAEGPD 103
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 114 bits (289), Expect = 9e-28
Identities = 74/282 (26%), Positives = 120/282 (42%), Gaps = 41/282 (14%)
Query: 206 NNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRT 265
+ V + G ++ +L++G DG S VR A + WSY QK +V + P
Sbjct: 142 DEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFT-HSRPHQNV 200
Query: 266 AWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNES 325
+ + T G +PL SSLVW P A+ LL + A L+
Sbjct: 201 STEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALS--------------DAALS-- 244
Query: 326 IQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGD 385
+ ++L G +++E R A+PL + R+ AL+G+
Sbjct: 245 -AAIEERMQSML-------GK--------LTLEP-GRQAWPLSGQVAHRFAAGRTALVGE 287
Query: 386 SAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLS 445
+AH P+ QG+NLG D+A LV++ + + G L Y+ R+ + L S
Sbjct: 288 AAHVFPPIGAQGLNLGLRDVATLVEIVEDRPED---PGSAAVLAAYDRARRPDILSRTAS 344
Query: 446 IDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMR 487
+DL+ R S PV+ L G L+ + P++ +FMR
Sbjct: 345 VDLLNRSLLSDFLPVQDLRAAGLHLLYSFGPLRR----LFMR 382
Score = 29.1 bits (66), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQ 531
+ D+ + GGG G A A+A+
Sbjct: 6 EHTDIAVIGGGPAGLAAAIALAR 28
>gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal
KH-domain/beta-lactamase-domain protein. This family of
proteins is universal in the archaea and consistsof an
N-terminal type-1 KH-domain (pfam00013) a central
beta-lactamase-domain (pfam00753) with a C-terminal
motif associated with RNA metabolism (pfam07521).
KH-domains are associated with RNA-binding, so taken
together, this protein is a likely metal-dependent
RNAase. This family was defined in as arCOG01782.
Length = 630
Score = 110 bits (278), Expect = 2e-25
Identities = 39/122 (31%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
++VT LG ++VGRS +L+S ++LDCG+++G D +P P+ + + +D
Sbjct: 175 VRVTALGGFREVGRSALLLSTPESRVLLDCGVNVGADGDNAYPYLD--VPEFQLDE-LDA 231
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS 123
++I+H HLDH G +P + +GY GP+Y T PT+ + +L D+ ++ +++G ++S
Sbjct: 232 VVITHAHLDHSGLVPLLFK-YGYDGPVYCTPPTRDLMTLLQLDYIDVA-QREGKKPPYSS 289
Query: 124 QM 125
+
Sbjct: 290 KD 291
>gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain [General function prediction only].
Length = 637
Score = 107 bits (270), Expect = 2e-24
Identities = 45/122 (36%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
++VT LG ++VGRS +LVS ++LDCG+++ + + FP P+ D +D
Sbjct: 181 VRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFP--YLDVPEFQP-DELDA 237
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS 123
+II+H HLDHCG LP + +GY GP+Y T PT+ + +L D+ +++ EK+G + S
Sbjct: 238 VIITHAHLDHCGFLPLLFK-YGYDGPVYCTPPTRDLMVLLQLDYIEVA-EKEGGEPPYES 295
Query: 124 QM 125
+
Sbjct: 296 KD 297
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 98.6 bits (246), Expect = 4e-22
Identities = 66/241 (27%), Positives = 99/241 (41%), Gaps = 47/241 (19%)
Query: 246 YDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFS---SLVWATTPENAKALLQ 302
Y Q IV TV +S +P AW+RFT G +ALLPL +LVW P+ A
Sbjct: 190 YGQTAIVGTVTVS-APRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAARRAA 248
Query: 303 MPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSR 362
+P ++F+ L + F +FT R
Sbjct: 249 LPDDAFLAELGAAFG---------TRMGRFTR------------------------IAGR 275
Query: 363 AAFPLGFGHSVRYIGPG-CALLGDSAHRIHPLAGQGVNLGFGDIACLVQ-LSAESVSNGY 420
AFPLG ++ R + G A +G++A +HP+AGQG+NLG D L LS
Sbjct: 276 HAFPLGL-NAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGA---- 330
Query: 421 PIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSI 480
P +L + + R + + + DL+ R++ P+ L + V P+K
Sbjct: 331 ---TPLALATFAARRALDRRVTIGATDLLPRLFTVDSRPLAHLRGAALTALEFVPPLKHA 387
Query: 481 L 481
L
Sbjct: 388 L 388
Score = 47.4 bits (113), Expect = 1e-05
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIES-GPEKSLHFSKSSSYSNRVSSINSS 569
+D+ I G G +G LA +A+ + LSI +I++ P +S+ R +++
Sbjct: 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPA-------ASANDPRAIALSHG 64
Query: 570 SKQLFETIGAW 580
S+ L ET+GAW
Sbjct: 65 SRVLLETLGAW 75
>gnl|CDD|168629 PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 374
Score = 97.3 bits (242), Expect = 7e-22
Identities = 86/328 (26%), Positives = 147/328 (44%), Gaps = 59/328 (17%)
Query: 165 ISYIVEND----LIIDAVTKK-LNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIE 219
+ Y+V+N +++ +T L TL + YQ+ ++H + IKF+ + I+
Sbjct: 97 LGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN-------DYSIIKFDD-KQIK 148
Query: 220 CKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALL 279
C LL+ DGA S+VR+ Y Q + +K P A + F P G ALL
Sbjct: 149 CNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIK-HEKPHENCAMEHFLPLGPFALL 206
Query: 280 PLSDEF-SSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLE 338
PL D++ SS++W+T+ + A ++ +P E V L N
Sbjct: 207 PLKDQYASSVIWSTSSDQAALIVNLPVEE-VRFLTQR-------------------NAGN 246
Query: 339 FFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGV 398
T + ++ ++FPL + RY L+ D+AH +HPLAGQG+
Sbjct: 247 SLGKITIDSEI-------------SSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGL 293
Query: 399 NLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLT 458
N G DI L + VSN L +Y+ +RQ +N + D + ++ +
Sbjct: 294 NQGIKDIEILSMI----VSNNGT------LQEYQKLRQEDNFIMYKLTDELNNIFSNYSK 343
Query: 459 PVKILGNLGFQLVNAVRPIKSILCDIFM 486
++ L +GF+++N +PIK+++ M
Sbjct: 344 NLRCLRQIGFKVINNFKPIKNLITSYAM 371
>gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.
Length = 148
Score = 63.1 bits (153), Expect = 7e-12
Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 12/138 (8%)
Query: 15 VGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHC 74
VG + LV G +++D G+ + P ID +I++H H DH
Sbjct: 4 VGSNSYLVEGDGGAVLIDTGLGADDALL-----LLALLGLDPKD--IDAIILTHAHADHI 56
Query: 75 GALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQILK 134
G LP E G A + A+ + L+D + + + + L
Sbjct: 57 GGLPELKEATG-APVVAAPEDAAALLRLGLDDAELRKLVDVLPVDVDLEGGDGILGGGLL 115
Query: 135 YVMIKGTSKVWGHSSDDL 152
+ GH +
Sbjct: 116 LFVTPH----PGHGPGHV 129
>gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2
(metallo-beta-lactamase superfamily) [Translation,
ribosomal structure and biogenesis; Replication,
recombination and repair].
Length = 555
Score = 66.9 bits (164), Expect = 1e-11
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHD----DRKFPDFKFIAPQGP 56
++IK+ LG ++G++ +V G I+LD G+ D D PDF ++
Sbjct: 6 KAKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYL---EE 62
Query: 57 VTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKG 116
D + + ++H H DH GALPY + +A PIY + T A L+++ K K
Sbjct: 63 NKDKVKGIFLTHGHEDHIGALPYLLKQVLFA-PIYASPLTAA----LIKEKLKEHGLFKN 117
Query: 117 DSNFFT 122
++
Sbjct: 118 ENELHE 123
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily. Apart
from the beta-lactamases a number of other proteins
contain this domain. These proteins include
thiolesterases, members of the glyoxalase II family,
that catalyse the hydrolysis of S-D-lactoyl-glutathione
to form glutathione and D-lactic acid and a competence
protein that is essential for natural transformation in
Neisseria gonorrhoeae and could be a transporter
involved in DNA uptake. Except for the competence
protein these proteins bind two zinc ions per molecule
as cofactor.
Length = 177
Score = 63.0 bits (153), Expect = 2e-11
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 18 SCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGAL 77
+ LV G I++D G + GP ID +I++H H DH G L
Sbjct: 1 NSYLVRDDGGAILIDTGPGEAEDLLAELKKL------GPKK--IDAIILTHGHPDHIGGL 52
Query: 78 PYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
P E G P+Y T + LL ++ E +
Sbjct: 53 PELLEAPG--APVYAPEGTAELLKDLLALLGELGAEAEPAPPD 93
>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed.
Length = 388
Score = 60.3 bits (146), Expect = 1e-09
Identities = 56/239 (23%), Positives = 90/239 (37%), Gaps = 37/239 (15%)
Query: 209 KIKFESGESIECKLLLGTDGARSQVR-NAMNVQYSNWSYDQKGIVATVKISTSPPNRTAW 267
+ GE + +L+G DGARS +R + + + Y T+ ++ S
Sbjct: 143 SVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRL 202
Query: 268 QRFTPSGTVALLPLSDEFSSLVWATTPENAKALL-QMPGESFVDALNSEF--NKPAELNE 324
+ G P+ D+ + LV + + + L + LN EF ++ A+
Sbjct: 203 YVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLN-EFVGDESADAMA 261
Query: 325 SIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLG 384
+I T F PLG + RY LLG
Sbjct: 262 AIGAGTAF------------------------------PLIPLGRMNLDRYHKRNVVLLG 291
Query: 385 DSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVM 443
D+AH IHP+ GQG+NL D L +S I ++L ++E IR+ N V+
Sbjct: 292 DAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQ--IALADALERFERIRRPVNEAVI 348
>gnl|CDD|233071 TIGR00649, MG423, conserved hypothetical protein. Contains an
ATP-binding domain at the N-terminal end of the
protein. Possibly part of a superfamily of
beta-lactmases [Hypothetical proteins, Conserved].
Length = 422
Score = 48.9 bits (117), Expect = 5e-06
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHD----DRKFPDFKFIAPQGPVTD 59
IK+ LG ++G++ +V + + ++ D G+ + D PDF ++ D
Sbjct: 1 IKIFALGGLGEIGKNMYVVEIDDEIVIFDAGILFPEDEMLGVDGVIPDFTYLQE---NED 57
Query: 60 MIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMT 93
+ + I+H H DH GA+PY G+ PIY T
Sbjct: 58 KVKGIFITHGHEDHIGAVPYLLHQVGFF-PIYGT 90
>gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases
[General function prediction only].
Length = 252
Score = 47.9 bits (113), Expect = 6e-06
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMG-GKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTD 59
+ I P+G G G S L+ G G +++D G+ + + +
Sbjct: 9 LDGITAFPIGVGPLSGNSVYLLVDGEGGAVLIDTGLGDADAE-------ALLEALAALGL 61
Query: 60 MIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIA 100
+D ++++H H DH G E FG A P+ +
Sbjct: 62 DVDAILLTHGHFDHIGGAAVLKEAFGAA-PVIAPAEVPLLL 101
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 46.9 bits (112), Expect = 2e-05
Identities = 44/233 (18%), Positives = 64/233 (27%), Gaps = 48/233 (20%)
Query: 215 GESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTA-------W 267
++ K L+G DG RS VR + +++ + G V +
Sbjct: 146 EYTVRAKYLVGCDGGRSPVRKQLGIEFEGFEGVPFG-SLDVLFDAPDLSDPVERAFVHYL 204
Query: 268 QRFTPSGTVALLPLSDEFSS---LVWATTPENAKALLQMPGESFVDALNSEFNKPAELNE 324
S + P S + PE + + E L S E
Sbjct: 205 IGAPHSRGFMVGPWRSAGRSRYYVQVPWDPEVEERPEEFTDEEAKQRLRSAVGIDLADVE 264
Query: 325 SIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLG 384
+ + + SR A G L G
Sbjct: 265 ILWKSI-WGVR-------------------------SRVATRYRKG--------RVFLAG 290
Query: 385 DSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQR 437
D+AH P GQG+N G D L A V G L YE+ R+
Sbjct: 291 DAAHIHPPTGGQGLNTGIQDAFNLAWKLAA-VLRGT--AGEALLDTYEAERRP 340
>gnl|CDD|224158 COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase
superfamily II [General function prediction only].
Length = 259
Score = 43.9 bits (104), Expect = 9e-05
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKI 110
ID +++SH H DH G LPY E P+Y HP +E FR+I
Sbjct: 59 IDAVVLSHGHYDHTGGLPYLLEENNPGIPVY-AHPD--AFKAKIEVFREI 105
>gnl|CDD|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed.
Length = 270
Score = 44.0 bits (105), Expect = 1e-04
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 32/116 (27%)
Query: 4 IKVTPLGAGQ---DVGR--SCILVSMGGKNIMLDCG-------MHMGYHDDRKFPDFKFI 51
+++T LG G R S IL+ +GG+ + DCG + G K
Sbjct: 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQRQLLKTGI----KPRK---- 53
Query: 52 APQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDF 107
ID + I+H H DH LP +G T P P +++F
Sbjct: 54 ---------IDKIFITHLHGDHIFGLPGLLSTRSLSG---RTEPLTIYGPKGIKEF 97
>gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase
superfamily I [General function prediction only].
Length = 269
Score = 43.2 bits (102), Expect = 2e-04
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
Query: 1 MSEIKVTPLGAG--------------QDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFP 46
++ T LG+G R + +G K +++D G P
Sbjct: 1 TGGMRFTVLGSGSSGGVPVIGCDCRACGGNRLRVDCGVGVKTLLIDAG-----------P 49
Query: 47 DFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPT 96
D + + V+D +D ++++H H DH L Y PIY+ T
Sbjct: 50 DLRDQGLRLGVSD-LDAILLTHEHSDHIQGLDDLRR--AYTLPIYVNPGT 96
>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 43.6 bits (103), Expect = 3e-04
Identities = 49/203 (24%), Positives = 74/203 (36%), Gaps = 45/203 (22%)
Query: 208 VKIKFESGES-IECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTA 266
V ++ G + ++G DGA S VR + + ++ V + PP +
Sbjct: 135 VVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLK-DPPPSSV 193
Query: 267 WQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESI 326
T G V ++PLS ++ PE Q+P + +P L E
Sbjct: 194 LSLCTREGGVMIVPLSGGIYRVLI-IDPER----PQVPKD-----------EPVTLEE-- 235
Query: 327 QVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVR----YIGPGCAL 382
+ T F L+ P MS FG++ R Y L
Sbjct: 236 -LKTSLIRICGTDFGLND-------PVWMS-----------RFGNATRQAERYRSGRIFL 276
Query: 383 LGDSAHRIH-PLAGQGVNLGFGD 404
GD+AH IH P GQG+N+G D
Sbjct: 277 AGDAAH-IHFPAGGQGLNVGLQD 298
>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 42.7 bits (101), Expect = 4e-04
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 214 SGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKG-IVATVKISTSPPNRTAWQRFTP 272
E++ + L+G DG RS VR A+ + + + +VA V ++ +R AW ++
Sbjct: 151 GEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGL--DRDAWHQWPD 208
Query: 273 S--GTVALLPL--SDEF 285
G +AL PL +D F
Sbjct: 209 GDMGMIALCPLPGTDLF 225
Score = 31.5 bits (72), Expect = 1.4
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSK 571
DV+I G G G TLA +A+ + +S +IE PE F S R I ++
Sbjct: 5 DVLIVGAGPTGLTLAIELAR----RGVSFRLIEKAPE---PFPGS-----RGKGIQPRTQ 52
Query: 572 QLFETIGAWDHI 583
++F+ +G D +
Sbjct: 53 EVFDDLGVLDRV 64
Score = 30.3 bits (69), Expect = 2.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 382 LLGDSAHRIHPLAG-QGVNLGFGD 404
L GD+AH +HP AG QG+N D
Sbjct: 285 LAGDAAH-VHPPAGGQGLNTSVQD 307
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 41.7 bits (98), Expect = 8e-04
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 357 VEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGF--GDIACLVQLSAE 414
+ E + P G S +G G L+GD+A ++PL G+G+ G +A AE
Sbjct: 248 ILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLA------AE 301
Query: 415 SVSNGYPIGHPESLTKYES 433
+++ G E+L +YE
Sbjct: 302 AIAEALEGGE-EALAEYER 319
Score = 35.9 bits (83), Expect = 0.060
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
+YDVVI G G G++ A +A+ L +L++E G E
Sbjct: 3 EYDVVIVGAGPAGSSAARRLAK----AGLDVLVLEKGSE 37
>gnl|CDD|179371 PRK02113, PRK02113, putative hydrolase; Provisional.
Length = 252
Score = 40.9 bits (96), Expect = 0.001
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 17 RSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGA 76
R+ LV G I++DCG PDF+ + P ID ++I+H H DH G
Sbjct: 35 RTSALVETEGARILIDCG-----------PDFREQMLRLPF-GKIDAVLITHEHYDHVGG 82
Query: 77 L 77
L
Sbjct: 83 L 83
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 40.1 bits (94), Expect = 0.003
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 32/152 (21%)
Query: 170 ENDLIIDAVTKKLNTLNIDIVYQ------------------KKVAHYELPEQPLNNVKIK 211
+ +++ V K NTLN+ + Q K+V E + V I
Sbjct: 76 DKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIE---NETDKVTIH 132
Query: 212 FESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQ----KGIVATVKISTSPPNRTAW 267
F GES L +G DG S+VR ++N S Y +G++ + + P+ A
Sbjct: 133 FADGESEAFDLCIGADGIHSKVRQSVN-ADSKVRYQGYTCFRGLIDDIDLKL--PD-CAK 188
Query: 268 QRFTPSGTVALLPLSDEFSSLVWATTPENAKA 299
+ + G ++PL + W T NAK
Sbjct: 189 EYWGTKGRFGIVPLLNN--QAYWFITI-NAKE 217
Score = 29.7 bits (67), Expect = 5.4
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 382 LLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIR 435
LLGD+AH P GQG D L N Y ++L +Y+ IR
Sbjct: 274 LLGDAAHATTPNMGQGAGQAMEDAIVLAN-----CLNAYDF--EKALQRYDKIR 320
>gnl|CDD|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase
superfamily III [General function prediction only].
Length = 292
Score = 38.5 bits (90), Expect = 0.006
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 24/68 (35%)
Query: 20 ILVSMGGKNIMLDCG-------MHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLD 72
IL+ + G+ + DCG + G + ID + I+H H D
Sbjct: 23 ILLRLEGEKFLFDCGEGTQHQLLRAGLPPRK-----------------IDAIFITHLHGD 65
Query: 73 HCGALPYF 80
H LP
Sbjct: 66 HIAGLPGL 73
>gnl|CDD|225212 COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase
superfamily) [General function prediction only].
Length = 293
Score = 37.7 bits (88), Expect = 0.011
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 14 DVG-RSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLD 72
DVG L+ GK I+ D G MG D P K G V +D LI++H D
Sbjct: 50 DVGQGLATLIRSEGKTILYDTGNSMG--QDVIIPYLK---SLG-VRK-LDQLILTHPDAD 102
Query: 73 HCGALPYFTEMFGYAGPIYMTHPTKA-IAPILLEDFRKISVEKKGDS 118
H G L + +++ + + +L + + K GDS
Sbjct: 103 HIGGLDEVLKTIKV-PELWIYAGSDSTSTFVLRDAGIPVRSCKAGDS 148
>gnl|CDD|233963 TIGR02651, RNase_Z, ribonuclease Z. Processing of the 3-prime end
of tRNA precursors may be the result of endonuclease or
exonuclease activity, and differs in different species.
Member of this family are ribonuclease Z, a tRNA 3-prime
endonuclease that processes tRNAs to prepare for
addition of CCA. In species where all tRNA sequences
already have the CCA tail, such as E. coli, the need for
such an enzyme is unclear. Protein similar to the E.
coli enzyme, matched by TIGR02649, are designated
ribonuclease BN [Transcription, RNA processing].
Length = 299
Score = 36.8 bits (86), Expect = 0.021
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 21/96 (21%)
Query: 18 SCILVSMGGKNIMLDCG----MHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDH 73
I + + G+ + DCG M I+P ID + I+H H DH
Sbjct: 19 PSIALKLNGELWLFDCGEGTQRQMLRSG---------ISPMK-----IDRIFITHLHGDH 64
Query: 74 CGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRK 109
LP + G P P +++F +
Sbjct: 65 ILGLPGLLSTMSFQG---RKEPLTIYGPPGIKEFIE 97
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 37.1 bits (86), Expect = 0.022
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 374 RYIGPG-CALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYE 432
+++GP LGD++H + P A QG + D A L AE++ + L +++
Sbjct: 287 QFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAAL----AEALDSD---DQSAGLKRFD 339
Query: 433 SIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDI 484
S+R+ V L Y ++ + N+ F A+R +S L D+
Sbjct: 340 SVRKERIAAVAKRGQLNRFAYHAT-GIFALGRNMLF----AIRSPESFLKDL 386
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 36.5 bits (85), Expect = 0.038
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 186 NIDIVYQKKVAHYELPEQPLNNVKIKFESGES--IECKLLLGTDGARSQVRNAMNVQYS 242
+ + Y ++ +E + + GES I L+G DGARS VR ++ + Y
Sbjct: 141 GVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYE 199
Score = 33.0 bits (76), Expect = 0.48
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 382 LLGDSAHRIHPLAGQGVNLGFGDIACLV-QLSAESVSNGYPIGHPESLTKYESIRQ 436
L GD+AH P G G+N G GD L +L+A V NG+ P L YE+ R+
Sbjct: 307 LAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAA--VLNGW--AGPALLDSYEAERR 358
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 36.4 bits (85), Expect = 0.038
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 378 PGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQR 437
PG +GD+AH + P+ G G+NL D + AE + G S ++++R
Sbjct: 284 PGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG-----RVSDRDLAAVQRR 338
Query: 438 ENLPV 442
P
Sbjct: 339 REFPT 343
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain.
This family is part of the beta-lactamase superfamily
and is related to pfam00753.
Length = 197
Score = 35.2 bits (81), Expect = 0.055
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 10/76 (13%)
Query: 27 KNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGY 86
I++D G + + ID +++SH H DH L E+
Sbjct: 1 TRILIDPGPGTRDLRQQPLAAPALLPR-------IDAVLLSHAHADHILGLLTLRELIKR 53
Query: 87 AG---PIYMTHPTKAI 99
P+Y
Sbjct: 54 LPKRLPVYGPPGVAED 69
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 35.7 bits (83), Expect = 0.063
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 216 ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKI 257
E++ + ++G DGA S VR + V + + ++ ++ +V V I
Sbjct: 159 ETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLI 200
Score = 34.5 bits (80), Expect = 0.15
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 382 LLGDSAHRIHPLAGQGVNLGFGDIACL 408
L GD+AH + P AGQG+N G D A L
Sbjct: 290 LAGDAAHLMPPFAGQGMNSGIRDAANL 316
>gnl|CDD|222167 pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain.
This family is part of the beta-lactamase superfamily
and is related to pfam00753.
Length = 158
Score = 34.4 bits (80), Expect = 0.064
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 16/60 (26%)
Query: 15 VGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHC 74
+G S L+ GGK I+ D P F PV D ++ISH H DH
Sbjct: 5 LGHSSFLIEGGGKRILTD-------------P-FLVGGRPPPVD--ADVVLISHAHDDHG 48
>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional.
Length = 488
Score = 35.4 bits (82), Expect = 0.083
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 208 VKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPP 262
V ++ G ++ + L+G DG RS VR A + + W ++A V+++ P
Sbjct: 133 VDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPE 187
Score = 34.2 bits (79), Expect = 0.17
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 382 LLGDSAHRIHPLAGQGVNLGFGD 404
L GD+AH P+ GQG+N G D
Sbjct: 269 LAGDAAHVHSPVGGQGLNTGVQD 291
>gnl|CDD|225130 COG2220, COG2220, Predicted Zn-dependent hydrolases of the
beta-lactamase fold [General function prediction only].
Length = 258
Score = 34.8 bits (80), Expect = 0.091
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 16 GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCG 75
G + L+ GGK I++D P + ID ++I+H H DH
Sbjct: 13 GHAAFLIETGGKRILID-----PVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLD 67
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 35.3 bits (82), Expect = 0.094
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLK-DLSILMIESGPEKSLHFSKSSS 558
YDVVI GGG++G A +++ + DLS+ ++E + S ++S
Sbjct: 4 YDVVIIGGGIMGAATAYELSE---YEPDLSVALLEKEDGVAQESSSNNS 49
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 34.1 bits (79), Expect = 0.19
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 512 DVVISGGGMIGTTLACAI-AQNPTLKDLSILMIESG 546
DV+I G G G LACAI AQ LS L+IE G
Sbjct: 1 DVIIIGAGPCG--LACAIEAQK---AGLSYLIIEKG 31
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 33.6 bits (77), Expect = 0.32
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
+YD VI G G G+ LA ++ LS+L++E+G
Sbjct: 5 KMEYDYVIVGSGSAGSVLAARLSD----AGLSVLVLEAGGP 41
>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional.
Length = 487
Score = 33.2 bits (76), Expect = 0.42
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 214 SGESIECKLLLGTDGARSQVRNAMNVQY 241
+GE I+ + ++G DG+RS VRN NV +
Sbjct: 148 NGERIQSRYVIGADGSRSFVRNHFNVPF 175
>gnl|CDD|237023 PRK11921, PRK11921, metallo-beta-lactamase/flavodoxin
domain-containing protein; Provisional.
Length = 394
Score = 32.7 bits (75), Expect = 0.49
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 59 DMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMT 93
D ID ++ +H +DH GALP + PIY T
Sbjct: 68 DKIDYIVANHGEIDHSGALPELMKEIP-DTPIYCT 101
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 32.7 bits (75), Expect = 0.50
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 511 YDVVISGGGMIGTTLACAI-AQNPTLKDLSILMIESGPEKSLHFSKSS 557
+DV+I GGG+ G L+CA+ K +I +G + +LHFS S
Sbjct: 1 FDVIIIGGGLAG--LSCALRLAEAGKK---CAIIAAG-QSALHFSSGS 42
>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional.
Length = 386
Score = 32.6 bits (75), Expect = 0.59
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 208 VKIKFESGESIECKLLLGTDGARSQVRNAM 237
V +F G LL+G DG RS VR +
Sbjct: 131 VTARFADGRRETADLLVGADGGRSTVRAQL 160
>gnl|CDD|219864 pfam08491, SE, Squalene epoxidase. This domain is found in
squalene epoxidase (SE) and related proteins which are
found in taxonomically diverse groups of eukaryotes and
also in bacteria. SE was first cloned from Saccharomyces
cerevisiae where it was named ERG1. It contains a
putative FAD binding site and is a key enzyme in the
sterol biosynthetic pathway. Putative transmembrane
regions are found to the protein's C-terminus.
Length = 276
Score = 32.3 bits (74), Expect = 0.60
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 378 PGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQL 411
G LLGD+ + HPL G G+ + DI L +L
Sbjct: 130 KGLILLGDALNMRHPLTGGGMTVALNDIVLLRKL 163
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 32.1 bits (74), Expect = 0.81
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFS 554
+DV++ GGG+ G T A A A+ + ++ G +LHFS
Sbjct: 3 FDVLVIGGGLAGLTAALAAAE----AGKRVALVAKGQ-GALHFS 41
>gnl|CDD|183831 PRK12933, secD, preprotein translocase subunit SecD; Reviewed.
Length = 604
Score = 32.0 bits (73), Expect = 0.94
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 17/98 (17%)
Query: 185 LNIDI--VYQKKVAHYE---------LPEQPLNNVKIKFESGESIECKLLLGTDGARSQV 233
L++D+ VYQ + L EQ + V ++ + + + + + ARS V
Sbjct: 140 LDVDVDPVYQ---EQRDALVDSVRQFLREQRIRGVSVRLDDSDQLA--VTTPDNDARSAV 194
Query: 234 RNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFT 271
R + Y W +++ S +T ++ T
Sbjct: 195 RQFIQQNYPGWQVTNSD-DRGLQLKLSQQEKTKFRNLT 231
>gnl|CDD|179979 PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.
Length = 494
Score = 32.0 bits (74), Expect = 0.96
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQ-NPTLKDLSILMIE 544
+ DVV+ GGG++ TL + + P + SI M E
Sbjct: 4 SKTDVVLIGGGIMSATLGTLLKELEP---EWSITMFE 37
>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
Length = 765
Score = 32.2 bits (74), Expect = 1.0
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Query: 382 LLGDSAHRIHPLAGQGVNLGFGD-IACLVQLSAESVSNGYPIGHPESLTKYESIRQRENL 440
L+GD+AH H G G L D I L P P +L YE R+
Sbjct: 273 LMGDAAHTAHFSIGSGTKLALEDAIELARCLHEH------PGDLPAALAAYEEERR---- 322
Query: 441 PVMLSI 446
+L I
Sbjct: 323 VEVLRI 328
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 31.8 bits (72), Expect = 1.1
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 507 GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+ DVVI GGG++G + A +A+ + ++E+G
Sbjct: 1 MSMKMDVVIIGGGIVGLSAAYYLAERG----ADVTVLEAGE 37
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 31.5 bits (72), Expect = 1.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
D+VI G G+ G LA + Q L +L+I++GP
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARP--GLRVLLIDAGPG 35
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino
acid transport and metabolism].
Length = 421
Score = 31.6 bits (72), Expect = 1.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSS 557
+DV I GGG+ G L C +A K +I + G + +LHFS S
Sbjct: 2 NFDVAIIGGGLAG--LTCGLALQQAGKRCAI--VNRG-QSALHFSSGS 44
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 31.4 bits (72), Expect = 1.3
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 171 NDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGAR 230
++ DA D+ V E Q + V + F G + L++G DG
Sbjct: 110 ARILADAARA----AGADVRLGTTVTAIE---QDDDGVTVTFSDGTTGRYDLVVGADGLY 162
Query: 231 SQVRNAM 237
S+VR+ +
Sbjct: 163 SKVRSLV 169
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 31.5 bits (72), Expect = 1.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSN 561
K YDV+I GGG G L AI L +++I G E +K++ N
Sbjct: 2 KIYDVIIIGGGPAG--LTAAIYA--ARAGLKVVLILEGGEPGGQLTKTTDVEN 50
>gnl|CDD|217526 pfam03385, DUF288, Protein of unknown function, DUF288.
Length = 390
Score = 31.3 bits (71), Expect = 1.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 244 WSYDQKG------IVATVKISTSPPNRTAWQRF 270
WS D G I+ TVKIST P W++F
Sbjct: 327 WSGDDYGMKAAKKILKTVKISTDPKIAETWKKF 359
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 31.3 bits (72), Expect = 1.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
++YDV++ G G G A A+ K + +IE GP
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAK-LGKK---VALIEKGP 36
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 31.1 bits (71), Expect = 1.4
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
DVV+ GGG++G + A +A+ + LS+ ++E G
Sbjct: 1 DVVVIGGGIVGLSTAYELAR----RGLSVTLLERGD 32
>gnl|CDD|234811 PRK00685, PRK00685, metal-dependent hydrolase; Provisional.
Length = 228
Score = 30.9 bits (71), Expect = 1.6
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 21/65 (32%)
Query: 16 GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFI-----APQGPVTDMIDCLIISHFH 70
G S L+ GGK I++D P FI A P +D ++++H H
Sbjct: 7 GHSAFLIETGGKKILID-------------P---FITGNPLADLKPEDVKVDYILLTHGH 50
Query: 71 LDHCG 75
DH G
Sbjct: 51 GDHLG 55
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 31.2 bits (71), Expect = 1.9
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 477 IKSILCDIFMRTSME-KVTLLVWNARYYS-------SLGGKQYDVVISGGGMIGTTLACA 528
IKS T V + S LG YDVVI GGG+ GT L
Sbjct: 4 IKSSFSRYRSSTLNSNAVKEASRDTSNQSLNTSSGNRLGSDVYDVVIVGGGVTGTALFYT 63
Query: 529 IAQNPTLKDLSIL 541
+++ LK ++++
Sbjct: 64 LSKFTNLKKIALI 76
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 30.9 bits (70), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 499 NARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546
++ SS G YD ++ GGG G LA ++QN S+L++E G
Sbjct: 44 SSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQN-----FSVLLLERG 86
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 31.2 bits (71), Expect = 2.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYS 560
+YDVV+ G G G A A LS +++ EK+ H+ S++ S
Sbjct: 7 EYDVVVVGSGAAGMVAALTAAHR----GLSTVVV----EKAPHYGGSTARS 49
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 29.9 bits (68), Expect = 2.1
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 514 VISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
I G G G ++ + + + L I + + P
Sbjct: 1 AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSP 34
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 30.8 bits (70), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIE 544
YDVV+ G G G + A +A K L +L++E
Sbjct: 1 YDVVVVGAGPAGASAAYRLAD----KGLRVLLLE 30
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 31.0 bits (71), Expect = 2.2
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 186 NIDIVYQKKVAHYELPEQPLNNVKIKFESGE---SIECKLLLGTDGARSQVRNAMNVQYS 242
NID+ ++ KV E Q + V + E+ + ++E ++ DGARS +R + +++
Sbjct: 140 NIDLRWKNKVTGLE---QHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFE 196
Query: 243 NWSYDQKGIVATVKISTS-PPNRTAWQRFTP---SGTVALL 279
+++ + ++A VK+ P R W F P G LL
Sbjct: 197 GRTFEDRFLIADVKMKADFPTERWFW--FDPPFHPGQSVLL 235
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members of
this protein family are salicylate 1-monooxygenase, also
called salicylate hydroxylase. This enzyme converts
salicylate to catechol, which is a common intermediate
in the degradation of a number of aromatic compounds
(phenol, toluene, benzoate, etc.). The gene for this
protein may occur in catechol degradation genes, such as
those of the meta-cleavage pathway.
Length = 414
Score = 30.6 bits (69), Expect = 2.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 202 EQPLNNVKIKFESGESIECKLLLGTDGARSQVRN 235
E+ V++ F G C LL+G DG +S +R+
Sbjct: 130 EEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRD 163
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 30.7 bits (70), Expect = 2.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 216 ESIECKLLLGTDGARSQVRNA 236
E++ K ++G DGARS+VR A
Sbjct: 195 ETVRAKYVVGCDGARSRVRKA 215
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 30.7 bits (70), Expect = 2.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIE 544
D++I GGGM G A + DL +L++E
Sbjct: 13 DILIIGGGMAGCGAAFEAKEW--APDLKVLIVE 43
>gnl|CDD|178624 PLN03075, PLN03075, nicotianamine synthase; Provisional.
Length = 296
Score = 30.0 bits (68), Expect = 3.1
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 355 MSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAH 388
M EEK + H +++ PG L+ SAH
Sbjct: 207 MDKEEKVKV-----IEHLGKHMAPGALLMLRSAH 235
>gnl|CDD|223503 COG0426, FpaA, Uncharacterized flavoproteins [Energy production and
conversion].
Length = 388
Score = 30.0 bits (68), Expect = 3.4
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDS 118
ID +I++H DH G+LP E+ A I + D + K GD+
Sbjct: 73 IDYIIVNHTEPDHSGSLPELLELAPNA-KIICSKLAARFLKGFYHDPEWFKIVKTGDT 129
>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase.
Length = 668
Score = 30.1 bits (67), Expect = 3.7
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 382 LLGDSAHRIHPLAGQGVNLGFGDIACLV----QLSAESVSNGYPIGHPESLTKYESIRQ 436
LLGDS H + P GQG + D L + +SV P+ SL +YE R+
Sbjct: 371 LLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRR 429
Score = 29.3 bits (65), Expect = 7.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 202 EQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAM 237
E + V + E+G+ E LL+G DG S+VRN +
Sbjct: 219 EDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNL 254
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 30.1 bits (68), Expect = 3.9
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
D+ + GGG G +A +A+ L + +IE P
Sbjct: 1 DLAVIGGGPAGLAIALELAR----PGLRVQLIEPHP 32
>gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase. This model
represents a subfamily of the short chain
dehydrogenases. Characterized members so far as
3-hydroxybutyrate dehydrogenases and are found in
species that accumulate ester polmers called
polyhydroxyalkanoic acids (PHAs) under certain
conditions. Several members of the family are from
species not known to accumulate PHAs, including
Oceanobacillus iheyensis and Bacillus subtilis. However,
polymer formation is not required for there be a role
for 3-hydroxybutyrate dehydrogenase; it may be members
of this family have the same function in those species.
Length = 255
Score = 29.6 bits (67), Expect = 4.0
Identities = 22/103 (21%), Positives = 30/103 (29%), Gaps = 25/103 (24%)
Query: 376 IGPGCALLGDSAHRIHPLAGQGVNL---GFGDIACLVQLSAESVSNGYPIGHPESLTKYE 432
IG A LA G N+ FG+ + G I P +TK +
Sbjct: 13 IGLAIA---------RALAAAGANVVVNDFGEEGAEAAAKVAGDAGGSVIYLPADVTKED 63
Query: 433 SIRQRENLPVMLSIDLMYRVYRSSLTPVKIL-GNLGFQLVNAV 474
I I + + IL N G Q V +
Sbjct: 64 EIAD--------MIAAAAAEFGG----LDILVNNAGIQHVAPI 94
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 30.2 bits (68), Expect = 4.1
Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
DV++ GGG G +A ++++P+ ++ ++E+GP
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPS---CTVTVLEAGP 34
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 30.1 bits (68), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 510 QYDVVISGGGMIGTTLACAIAQ-NPTLK 536
++DVVI GGG+ G A I + +P+L
Sbjct: 3 EHDVVIVGGGLAGCRAALEIKRLDPSLD 30
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 29.8 bits (67), Expect = 4.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 378 PGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQL 411
G +GD A++ HPL G G+ F D L +
Sbjct: 337 KGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKS 370
>gnl|CDD|235270 PRK04286, PRK04286, hypothetical protein; Provisional.
Length = 298
Score = 29.6 bits (67), Expect = 4.9
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 16/68 (23%)
Query: 62 DCLIISHFHLDHC---GALPYFTEMFGYAGPIY------MTHPTKAI-------APILLE 105
D + ISH+H DH PY IY + PT+ I AP L+
Sbjct: 67 DVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLK 126
Query: 106 DFRKISVE 113
+ I+ +
Sbjct: 127 AVKDIAKK 134
>gnl|CDD|224966 COG2055, COG2055, Malate/L-lactate dehydrogenases [Energy
production and conversion].
Length = 349
Score = 29.5 bits (67), Expect = 5.3
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 73 HCGALPYFTEMF---GYAGPIYMTHPTKAIAP 101
H GAL Y+ E G G I MT+ +AP
Sbjct: 119 HFGALGYYAEQAAEAGLIG-IAMTNSDAVVAP 149
>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase. The
broader family (TIGR00345) to which the current family
belongs consists of transport-energizing ATPases,
including to TRC40/GET3 family involved in
post-translational insertion of protein C-terminal
transmembrane anchors into membranes from the cyotosolic
face. This family, however, is restricted to ATPases
that energize pumps that export arsenite (or
antimonite).
Length = 566
Score = 29.7 bits (67), Expect = 5.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSN-RVSSI 566
K + + GG+ TT+A AIA K L + + S P L + + S +N +VS I
Sbjct: 320 EKGLIMTMGKGGVGKTTVAAAIAVRLANKGLDVHLTTSDPAAHLSVTLTGSLNNLQVSRI 379
Query: 567 N 567
+
Sbjct: 380 D 380
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 29.6 bits (67), Expect = 5.5
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH 552
DVV+ G G+ G A A+ L + ++E G
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAG----LKVAVVEKGQPFGGA 37
>gnl|CDD|236924 PRK11539, PRK11539, ComEC family competence protein; Provisional.
Length = 755
Score = 29.6 bits (67), Expect = 5.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 65 IISHFHLDHCGALPY 79
I+SH HLDH G L
Sbjct: 556 ILSHEHLDHRGGLAS 570
>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 29.3 bits (66), Expect = 6.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 419 GYPIGHPESLTKYESIRQRENLP 441
GY IGHPE + E +R NLP
Sbjct: 244 GYAIGHPELIAVLEKVRLPYNLP 266
>gnl|CDD|225157 COG2248, COG2248, Predicted hydrolase (metallo-beta-lactamase
superfamily) [General function prediction only].
Length = 304
Score = 29.0 bits (65), Expect = 6.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 19/69 (27%)
Query: 62 DCLIISHFHLDHCGALPYFTEMFG---------YAGPI-YMTHPTKAI-------APILL 104
D + ISH+H DH P+F ++ Y G + + HPT+ I A L
Sbjct: 67 DVITISHYHYDH--HTPFFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFL 124
Query: 105 EDFRKISVE 113
E + I+ E
Sbjct: 125 ESLKDIARE 133
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 29.3 bits (66), Expect = 7.0
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 212 FESGES--IECKLLLGTDGARSQVRNAMNVQYSNWSY 246
G I + L+G DGA S VR + + Y
Sbjct: 136 RADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKY 172
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 29.0 bits (66), Expect = 8.0
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546
+YD +I G G G LA ++++P D+S+L++E+G
Sbjct: 4 MEYDYIIIGAGSAGCVLANRLSEDP---DVSVLLLEAG 38
>gnl|CDD|219606 pfam07852, DUF1642, Protein of unknown function (DUF1642). The
sequences making up this family are derived from various
hypothetical phage and prophage proteins. The region in
question is approximately 140 amino acids long.
Length = 136
Score = 27.7 bits (62), Expect = 8.7
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 5/105 (4%)
Query: 150 DDLLEFNKAHNYQDRISYIVENDLIIDAVTKKL-----NTLNIDIVYQKKVAHYELPEQP 204
D +E K I + + D + ++ N + + + YE+ ++
Sbjct: 11 ADWIEKCKESLEFSIIEDLTLINYTEDDIPDEVLDWLNIEENQETLANAWLDGYEVEKEQ 70
Query: 205 LNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQK 249
L VK+ +G S S + + K
Sbjct: 71 LYYVKLPNVNGLSRRLSDSTFVLKVESGIISEFTKGKDYLLNALK 115
>gnl|CDD|236541 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 28.9 bits (66), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549
V+I GGG IG LA + + + S+ +IE PE+
Sbjct: 234 VMIVGGGNIGYYLAKLLEK----EGYSVKLIERDPER 266
>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding
domain. L-lactate dehydrogenases are metabolic enzymes
which catalyze the conversion of L-lactate to pyruvate,
the last step in anaerobic glycolysis.
L-2-hydroxyisocaproate dehydrogenases are also members
of the family. Malate dehydrogenases catalyze the
interconversion of malate to oxaloacetate. The enzyme
participates in the citric acid cycle. L-lactate
dehydrogenase is also found as a lens crystallin in bird
and crocodile eyes. N-terminus (this family) is a
Rossmann NAD-binding fold. C-terminus is an unusual
alpha+beta fold.
Length = 142
Score = 27.5 bits (62), Expect = 9.9
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 513 VVISG-GGMIGTTLACAIAQNPTLKDLSILMIE 544
V + G GG +G++LA A+A +L ++ I
Sbjct: 3 VAVVGAGGGVGSSLAFALALQGLADELVLVDIN 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,632,335
Number of extensions: 2867768
Number of successful extensions: 2614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2535
Number of HSP's successfully gapped: 145
Length of query: 595
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 493
Effective length of database: 6,413,494
Effective search space: 3161852542
Effective search space used: 3161852542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.9 bits)