RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9964
(595 letters)
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 208 bits (532), Expect = 8e-62
Identities = 47/314 (14%), Positives = 110/314 (35%), Gaps = 38/314 (12%)
Query: 167 YIVENDLIIDAVTKKLNTL-NIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLG 225
++ + + V +K++ ++++++ ++ + E+ +++ G + ++++G
Sbjct: 102 ILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAI-DQVRLNDGRVLRPRVVVG 160
Query: 226 TDGARSQVRNAM-NVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVA-LLPLSD 283
DG S VR + ++ Y +V T + G +A P+
Sbjct: 161 ADGIASYVRRRLLDIDVERRPYPSPMLVGTFAL-APCVAERNRLYVDSQGGLAYFYPIGF 219
Query: 284 EFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLS 343
+ + LV + E A+ L+ + F
Sbjct: 220 DRARLVVSFPREEARELMADTRGESLRRRLQRFVGDE----------------------- 256
Query: 344 TGNEQVVPPRVMSVEEKS-RAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGF 402
+ +V S P+G+ + RY A+LGD+ H +HP+ GQG+NL
Sbjct: 257 ------SAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAI 310
Query: 403 GDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKI 462
D + L ++ + + ++L Y++ R N ++ +
Sbjct: 311 EDASALADALDLALRDACALE--DALAGYQAERFPVNQAIVSYGHALATSL-EDRQRFAG 367
Query: 463 LGNLGFQLVNAVRP 476
+ + Q +
Sbjct: 368 VFDTALQGSSRTPE 381
Score = 73.0 bits (180), Expect = 6e-14
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINS 568
DV+I+G G+ G LA + + ++++E N +
Sbjct: 5 NHIDVLINGCGIGGAMLAYLLGRQ----GHRVVVVEQARR--------ERAINGADLLKP 52
Query: 569 SSKQLFETIGAWDHIESTRTCTVDNM 594
+ ++ E G + +
Sbjct: 53 AGIRVVEAAGLLAEVTRRGGRVRHEL 78
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 179 bits (458), Expect = 8e-51
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
+++ P GA ++V S L+ GG+ ++LDCGM G + R F F + +D
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDA 54
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS 123
++++H HLDH G LP GY GP+Y T T + I+LED K+ E FF
Sbjct: 55 VLLTHAHLDHVGRLPKLFRE-GYRGPVYATRATVLLMEIVLEDALKVMDE-----PFFGP 108
Query: 124 QM 125
+
Sbjct: 109 ED 110
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 184 bits (469), Expect = 1e-50
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDD--RKFPDFKFIAPQGPV-TD 59
I++T LG ++VGRS +LV +++D G+++ +D + FP F Q +
Sbjct: 188 WIRITGLGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREG 247
Query: 60 MIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSN 119
++D +II+H HLDHCG LPY + GPIY T PT+ + +L +DF +I + G
Sbjct: 248 LLDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNGQDP 306
Query: 120 FFTSQM 125
+ +
Sbjct: 307 LYRPRD 312
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 177 bits (452), Expect = 1e-49
Identities = 56/123 (45%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEID 65
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S D +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 SQM 125
Sbjct: 125 ETD 127
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 176 bits (448), Expect = 8e-48
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++T +G ++VGRSC+ + ++LDCG+++ DD+ + ++ D +D
Sbjct: 179 WARLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKN--SYPYLNVPEFTLDSLD 236
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
+II+H HLDH G LPY GY GP+Y T PT+ + +L D I+ ++ + F
Sbjct: 237 AVIITHAHLDHSGFLPYLYHY-GYDGPVYCTAPTRDLMTLLQLDHIDIA-HREDEPLPFN 294
Query: 123 SQM 125
+
Sbjct: 295 VKH 297
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 171 bits (436), Expect = 3e-46
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++VT LG ++VGRSC L+S I++DCG+++G D+ P + ID
Sbjct: 183 WVRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGS-DENMTPYLYVPEVFPL--NQID 239
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
+I++H HLDH G +P + GY GP+Y T PT+ + +L D+ ++ K+G +
Sbjct: 240 AVIVTHAHLDHQGLVPLLFKY-GYEGPVYCTPPTRDLMVLLQLDYIDVA-AKEGKKIPYE 297
Query: 123 SQM 125
S M
Sbjct: 298 SGM 300
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 122 bits (306), Expect = 3e-29
Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 16/134 (11%)
Query: 10 GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHF 69
G+G VG +V +++D G + + + V ID +I+S
Sbjct: 11 GSGTTVGS---VVRFDNVTLLIDPGWNPSKVSYEQCIKY-----WEKVIPEIDVIILSQP 62
Query: 70 HLDHCGALPY----FTEMFGYAGPIYMTHPTKAIAPILLEDF-RKISVEKKGDSNFFTSQ 124
++ GA FT F +Y T P + + D V D+N +
Sbjct: 63 TIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLE 122
Query: 125 MN---ILKIQILKY 135
I LKY
Sbjct: 123 DIEISFDHIVPLKY 136
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 80.9 bits (200), Expect = 1e-16
Identities = 46/300 (15%), Positives = 103/300 (34%), Gaps = 64/300 (21%)
Query: 171 NDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGAR 230
++++++ N +++ +K+ E + FE+ S L++ +G
Sbjct: 131 RAILLNSLE------NDTVIWDRKLVMLE---PGKKKWTLTFENKPSETADLVILANGGM 181
Query: 231 SQVRNAMN---VQYSNWSYDQKGIVATVKISTSPP-------NRTAWQRFTPSGTVALLP 280
S+VR + V+ + I A + N + P
Sbjct: 182 SKVRKFVTDTEVEETGTFN----IQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANP 237
Query: 281 LSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTH---NVL 337
++ +L + + + P + + + +F + + + +F+
Sbjct: 238 NNNG--ALHFGIS-------FKTP-DEWKNQTQVDFQNRNSVVD--FLLKEFSDWDERYK 285
Query: 338 EFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQG 397
E + +T + + R+ +E+ P ++GD+AH + P AGQG
Sbjct: 286 ELIH-TTLSFVGLATRIFPLEK------PWKSKRP-----LPITMIGDAAHLMPPFAGQG 333
Query: 398 VNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQ----------RENLPVMLSID 447
VN G D L ++++++G E++ YE +N M D
Sbjct: 334 VNSGLVDALIL----SDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPD 389
Score = 29.3 bits (66), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 513 VVISGGGMIGTTLACAIAQN 532
V I GGG +G T+A + QN
Sbjct: 29 VAIIGGGPVGLTMAKLLQQN 48
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 72.8 bits (178), Expect = 1e-13
Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 34/193 (17%)
Query: 216 ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPP---NRTAWQRFTP 272
E++ CK ++G DG S VR + + D V +++ P +R A
Sbjct: 215 ETVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHS-AE 273
Query: 273 SGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKF 332
SG++ ++P + Q+ + E I A K
Sbjct: 274 SGSIMIIPRENNLVRFYV-----------QLQARAEKGGRVDRTKFTPE--VVIANAKKI 320
Query: 333 THNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALL-GDSAHRIH 391
H P + A+ +G + ++ + GD+ H
Sbjct: 321 FH----------------PYTFDVQQLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHS 364
Query: 392 PLAGQGVNLGFGD 404
P AGQG+N D
Sbjct: 365 PKAGQGMNTSMMD 377
Score = 33.9 bits (77), Expect = 0.16
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 510 QYDVVISGGGMIGTTLACAIAQ-NPTLKDLSILMIESGPEKSLH 552
DV+I G G G A +++ DL + +I+ K +
Sbjct: 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYN 51
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
d.157.1.10
Length = 429
Score = 70.8 bits (174), Expect = 3e-13
Identities = 26/140 (18%), Positives = 42/140 (30%), Gaps = 25/140 (17%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGM------------HMGYHDDRKFPDFK 49
++ VT +G + I V+ +I D G ++R P+ K
Sbjct: 5 AKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELK 64
Query: 50 FI---------APQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIA 100
+ + +SH HLDH + Y P+Y TK I
Sbjct: 65 DLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAV----PLYTLKETKMIL 120
Query: 101 PILLEDFRKISVEKKGDSNF 120
L + + NF
Sbjct: 121 NSLNRKGDFLIPSPFEEKNF 140
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 66.5 bits (163), Expect = 9e-12
Identities = 39/192 (20%), Positives = 58/192 (30%), Gaps = 39/192 (20%)
Query: 215 GESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSG 274
S+ + ++G DG RS VR A + S ++ +A ++ P P G
Sbjct: 150 PRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITPRPIGE--TVPLG 207
Query: 275 TVALLPLSDEFSSLVWATTPENAKALLQMPG-ESFVDALNSEFNKPAELNESIQVATKFT 333
V PL D ++ A+ P + A + E + F
Sbjct: 208 MVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISHGE-PVWVSAFG 266
Query: 334 HNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRY-IGPGCALLGDSAHRIHP 392
R +S Y G L GDSAH P
Sbjct: 267 DPA----------------RQVS-----------------AYRRGR-VLLAGDSAHVHLP 292
Query: 393 LAGQGVNLGFGD 404
GQG+N+ D
Sbjct: 293 AGGQGMNVSVQD 304
Score = 32.7 bits (75), Expect = 0.42
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 510 QYDVVISGGGMIGTTLACAIAQ 531
V++ G G G LA +
Sbjct: 12 DASVIVVGAGPAGLMLAGELRL 33
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 65.4 bits (160), Expect = 2e-11
Identities = 37/192 (19%), Positives = 55/192 (28%), Gaps = 39/192 (20%)
Query: 215 GESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSG 274
++ L+G DG RS VR A + + + +A +K P P G
Sbjct: 149 KHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQPRMIGE--TLPGG 206
Query: 275 TVALLPLSDEFSSLVWATTPENAKALLQMPG-ESFVDALNSEFNKPAELNESIQVATKFT 333
V + PL + ++ + P DA E + F
Sbjct: 207 MVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIAHAE-PVWVSAFG 265
Query: 334 HNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRY-IGPGCALLGDSAHRIHP 392
+ R ++ Y G L GDSAH P
Sbjct: 266 NAT----------------RQVT-----------------EYRRGR-VILAGDSAHIHLP 291
Query: 393 LAGQGVNLGFGD 404
GQG+N D
Sbjct: 292 AGGQGMNTSIQD 303
Score = 32.3 bits (74), Expect = 0.43
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 511 YDVVISGGGMIGTTLACAIAQ 531
V++ G G G LA +
Sbjct: 12 AAVIVVGAGPAGMMLAGELRL 32
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 65.1 bits (159), Expect = 3e-11
Identities = 38/193 (19%), Positives = 60/193 (31%), Gaps = 38/193 (19%)
Query: 215 GESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSG 274
+ + +G DG RS VR ++ + ++ V R W+R
Sbjct: 191 PYPVRARYGVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPEREVPR-RWERTPDGI 249
Query: 275 TVALLPLSDEFSSLVWATTPENAKALLQMPG--ESFVDALNSEFNKPAELNESIQVATKF 332
V P +++ ++ A + P E A+ P L E + ++F
Sbjct: 250 LVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRGTPLTLTEPVSWLSRF 309
Query: 333 THNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALL-GDSAHRIH 391
R RY G LL GD+AH
Sbjct: 310 GDAS----------------RQAK-----------------RY-RSGRVLLAGDAAHVHF 335
Query: 392 PLAGQGVNLGFGD 404
P+ GQG+N G D
Sbjct: 336 PIGGQGLNTGLQD 348
Score = 32.4 bits (74), Expect = 0.50
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 511 YDVVISGGGMIGTTLACAIAQ 531
DVV+ GGG +G LA +
Sbjct: 50 TDVVVVGGGPVGLMLAGELRA 70
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 62.6 bits (152), Expect = 2e-10
Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 30/198 (15%)
Query: 214 SGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPP-NRTAWQRFTP 272
E+++ + ++G DGARS VR A+ Q S +Q V V T P R +
Sbjct: 194 QIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVRYKVAIQSE 253
Query: 273 SGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNK---PAELN-ESIQV 328
G V ++P + + V+ L + + P +L +++
Sbjct: 254 QGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYKLEVKNVPW 313
Query: 329 ATKFT--HNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDS 386
+ + + ++ + V F + GD+
Sbjct: 314 WSVYEIGQRICAKYDDVVDAVATPDSPLPRV-------F----------------IAGDA 350
Query: 387 AHRIHPLAGQGVNLGFGD 404
H P AGQG+N D
Sbjct: 351 CHTHSPKAGQGMNFSMQD 368
Score = 31.8 bits (72), Expect = 0.72
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH 552
Q DV+I G G G TLA +A D+ ++E
Sbjct: 32 QVDVLIVGCGPAGLTLAAQLAA---FPDIRTCIVEQKEGPMEL 71
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 62.3 bits (151), Expect = 2e-10
Identities = 39/304 (12%), Positives = 93/304 (30%), Gaps = 43/304 (14%)
Query: 188 DIVYQKKVAHYELPEQPLNNVKIKFESGE--SIECKLLLGTDGARSQVRNAMNVQYSN-- 243
D+ + +V + V+ + G + ++ G R++V A+ + +
Sbjct: 127 DVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVYSRF 186
Query: 244 ------WSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPENA 297
+ Y K +P G +PLSD +S+ + E A
Sbjct: 187 FQNVALYGY-----FENGKRLPAPRQGNILSAAFQDGWFWYIPLSDTLTSVGAVVSREAA 241
Query: 298 KALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSV 357
+A+ + + ++ + E + A +V +
Sbjct: 242 EAIKDGHEAALLRYIDRC----PIIKEYLAPA-----------------TRVTTGDYGEI 280
Query: 358 EEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVS 417
R + ++ + G AL+GD+A + P+ GV+L + + ++
Sbjct: 281 ----RIRKDYSYCNT-SFWKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLA 335
Query: 418 NGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPI 477
++E +RE + Y + + + + + A
Sbjct: 336 GEMS--EQRCFEEFERRYRREYGNFYQFLVAFYDMNQDTDSYFWSARKIINTEERANEAF 393
Query: 478 KSIL 481
++
Sbjct: 394 VRLI 397
Score = 38.0 bits (88), Expect = 0.008
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 24/84 (28%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP---EK---SLHFSKSSSYSNR 562
+ +D+++ GGG G+TLA +A + +L++E + SL
Sbjct: 6 EVFDLIVIGGGPGGSTLASFVAM----RGHRVLLLEREAFPRHQIGESLLP--------- 52
Query: 563 VSSINSSSKQLFETIGAWDHIEST 586
++ + +G D ++
Sbjct: 53 -----ATVHGICAMLGLTDEMKRA 71
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Length = 562
Score = 61.0 bits (149), Expect = 5e-10
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 14/115 (12%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKF------PDFKFIAPQGP 56
+++ PLG ++G++ + + +LD G+ + ++ P ++
Sbjct: 16 HVEIIPLGGMGEIGKNITVFRFRDEIFVLDGGL--AFPEEGMPGVDLLIPRVDYLIEHR- 72
Query: 57 VTDMIDCLIISHFHLDHCGALPYFTEMFGYAG---PIYMTHPTKAIAPILLEDFR 108
I +++H H DH G LP+ M PIY T + LE+F
Sbjct: 73 --HKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEFG 125
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 60.9 bits (148), Expect = 6e-10
Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 64/205 (31%)
Query: 215 GESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVK---ISTSPPNRTAWQRFT 271
++ + L+ DGA S R A+ + Q + + + R A F
Sbjct: 180 TRAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLGERAALFFFL 239
Query: 272 PSGTVALLPLSDEFSSLVW----------ATTPENAKALLQMPGESF-VDALN-SEFNKP 319
+ PL ++ +T ++ + + + ++ L+ SE+
Sbjct: 240 MLSSSLRFPLRALDGRGLYRLTVGVDDASKSTMDSFELVRRAVAFDTEIEVLSDSEW--- 296
Query: 320 AELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPG 379
L +VA F+ RV F
Sbjct: 297 -HLTH--RVADSFSAG-----------------RV----------F-------------- 312
Query: 380 CALLGDSAHRIHPLAGQGVNLGFGD 404
L GD+AH + P G G+N G G
Sbjct: 313 --LTGDAAHTLSPSGGFGMNTGIGS 335
Score = 31.6 bits (72), Expect = 0.86
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 510 QYDVVISGGGMIGTTLACAIAQ 531
+ DV+I GGG +G LA +A
Sbjct: 26 ETDVLILGGGPVGMALALDLAH 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 6e-10
Identities = 60/331 (18%), Positives = 94/331 (28%), Gaps = 112/331 (33%)
Query: 259 TSPPNRTAWQR----------FTPSGTVALLPLSDEFSSLVWATTPENAKAL----LQMP 304
TS + W R F+ V P +L E K + M
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNP-----VNLTIHFGGEKGKRIRENYSAMI 1692
Query: 305 GESFVDALNSEFNKPAELNESIQVATKFTH--NVLEFFNLSTGNEQVVPPRVMSVEE--- 359
E+ VD E+NE T F +L + T Q P + +E+
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYT-FRSEKGLL---SA-TQFTQ---PALTLMEKAAF 1744
Query: 360 ---KSRAAFPLG--F-GHSVRYIGPGCALLGD-SAHRIHPLAGQ-GVNLGFGDIACLVQL 411
KS+ P F GHS LG+ +A LA V + + +V
Sbjct: 1745 EDLKSKGLIPADATFAGHS----------LGEYAA-----LASLADV-MSIESLVEVV-- 1786
Query: 412 SAESVSNGYPIGHPESLTKYESIRQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLV 471
R P LG + ++
Sbjct: 1787 -----------------------FYRGMTM-------------QVAVPRDELGRSNYGMI 1810
Query: 472 NAVRP--IKSILCDIFMRTSMEKV----TLLVWNARYYSSLGGKQYDVVISGGGMIGTTL 525
A+ P + + ++ +E+V LV Y +QY V + G
Sbjct: 1811 -AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE--NQQY--VAA-----GDLR 1860
Query: 526 ACAIAQNPTLKDLSILMIESGP-EKSLHFSK 555
A N L + + I+ +KSL +
Sbjct: 1861 ALDTVTN-VLNFIKLQKIDIIELQKSLSLEE 1890
Score = 50.0 bits (119), Expect = 2e-06
Identities = 70/383 (18%), Positives = 115/383 (30%), Gaps = 144/383 (37%)
Query: 79 YFTEMFGYAGPIYMTHPT------KAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQI 132
YF E+ +Y T+ K A L E + FT +NIL+
Sbjct: 169 YFEELRD----LYQTYHVLVGDLIKFSAETLSE----LIRTTLDAEKVFTQGLNILE--- 217
Query: 133 LKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQ 192
W + + + Y L+ ++ L + Q
Sbjct: 218 ------------WLENPSNTPD----------KDY-----LLSIPISCPLIGV-----IQ 245
Query: 193 KKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGA-RSQVRNAMNVQYSNWSYDQKGI 251
+AHY + KLL T G RS ++ A +G+
Sbjct: 246 --LAHYV------------------VTAKLLGFTPGELRSYLKGATGHS--------QGL 277
Query: 252 VATVKISTSPPNRTAWQRFTPSGTVAL-------------LPLSDEFSSLVWATTPENA- 297
V V I+ + +W+ F S A+ P + + + EN
Sbjct: 278 VTAVAIAETD----SWESFFVSVRKAITVLFFIGVRCYEAYPNTS-LPPSILEDSLENNE 332
Query: 298 ---------KALLQMPGESFVDALNSEFNKPAELNESIQVATK--FTHNV-------LEF 339
L Q + +V+ NS PA + ++++ + V L
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHL--PA--GKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 340 FNLS-------TGNEQVVPPRVMSVEEKSR--AAF-PLG--FGHSVRYIGPGCALLGDSA 387
NL+ +G +Q R+ E K + F P+ F HS LL ++
Sbjct: 389 LNLTLRKAKAPSGLDQ---SRIPFSERKLKFSNRFLPVASPF-HS--------HLLVPAS 436
Query: 388 HRI-HPLAGQGVNLGFGDIACLV 409
I L V+ DI V
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPV 459
Score = 44.7 bits (105), Expect = 9e-05
Identities = 84/445 (18%), Positives = 129/445 (28%), Gaps = 147/445 (33%)
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKI---SVEKKGDSNF 120
L +SH L+H +P T F A L E F KI E +
Sbjct: 9 LTLSHGSLEHVLLVP--TASFFIAS-------------QLQEQFNKILPEPTEGFAADDE 53
Query: 121 FTSQMNILKIQILKYVMIKGTSKVWGHSSDDLL-----EFNKAHNYQDRISYIVENDLII 175
T+ L + L YV G D +L EF Y+ ND I
Sbjct: 54 PTTPAE-LVGKFLGYVSSLVEPSKVGQF-DQVLNLCLTEFENC--------YLEGND--I 101
Query: 176 DAVTKKLNTLNIDIVYQKK--VAHY----ELPEQPLNNVKIK--FESGESIECKL--LLG 225
A+ KL N + + K + +Y + ++P + F + +L + G
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 226 TDGARSQVRNAMNVQYSNWS-----YDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLP 280
G Y + Y T L
Sbjct: 162 GQGN--------TDDY--FEELRDLYQ-----------TYHVLV---GDLIKFSAETLSE 197
Query: 281 LSDE-----------FSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVA 329
L + L W P N P + ++ + + P L IQ+A
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNT------PDKDYLLS--IPISCP--LIGVIQLA 247
Query: 330 T-KFTHNVL-----EFFNLSTG----NEQVVPPRVMSVEEKSRAAFPLGFGHSVR---YI 376
T +L E + G ++ +V ++ E S +F + ++ +I
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA-ETDSWESFFVSVRKAITVLFFI 306
Query: 377 G-------PGCAL----LGDSAHRIHPLAGQGV--------NLGFGDIACLVQ-----LS 412
G P +L L DS +GV NL + V L
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLEN-----NEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 413 AE-----SVSNGYPI----GHPESL 428
A S+ NG G P+SL
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSL 386
Score = 41.2 bits (96), Expect = 0.001
Identities = 66/399 (16%), Positives = 126/399 (31%), Gaps = 130/399 (32%)
Query: 254 TVKISTS--PPNRTAWQRFT---PSGTVALLPLSDEFSS---LVWATTPENAKALLQMPG 305
+ + T+ ++F P T DE ++ LV K L
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGF-AADDEPTTPAELV-------GKFL----- 65
Query: 306 ESFVDALNSEFNKPAELNESIQVATK-FTHNVLEFFNLSTGNE---------QVVPPRVM 355
+V +L E +K + ++ + + F + LE GN+ Q ++
Sbjct: 66 -GYVSSL-VEPSKVGQFDQVLNLCLTEFENCYLE------GNDIHALAAKLLQENDTTLV 117
Query: 356 SVEEKSRAAFP-LGFGHSVRYIGPGCALL---GDSAHRIHPL-AGQGVNLGFGD------ 404
+E + AL G+ ++ + GQG + +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 405 ------IACLVQLSAESVSNGYPIGHPESLTKYES--------IRQRENLP---VMLS-- 445
+ L++ SAE++S I K + + N P +LS
Sbjct: 178 QTYHVLVGDLIKFSAETLSE--LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 446 -----IDLM----YRVYRSSL--TPVKILGNL------GFQLVNAVRPIKSILCDIFMRT 488
I ++ Y V L TP ++ L LV AV ++ + F +
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 489 SMEKVTLLVWNARYYSSLG--GKQY------------DVVISGGG----MIG------TT 524
+ +T+L + +G + D + + G M+
Sbjct: 296 VRKAITVLFF-------IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 525 LACAIAQ-N---PTLKDLSI-L------MIESGPEKSLH 552
+ + + N P K + I L ++ SGP +SL+
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Score = 37.0 bits (85), Expect = 0.021
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 23/82 (28%)
Query: 146 GHSSDDLLE---FNKAHNYQDRISYIVENDLI-IDAVTKKLNTLNIDIVYQKKVAHYELP 201
G + L+E +N N Q Y+ DL +D VT LN + + +K+ EL
Sbjct: 1834 GKRTGWLVEIVNYNVE-NQQ----YVAAGDLRALDTVTNVLNFIKL-----QKIDIIELQ 1883
Query: 202 EQPLNNVKIKFESGESIECKLL 223
+ S E +E L
Sbjct: 1884 KSL---------SLEEVEGHLF 1896
Score = 34.3 bits (78), Expect = 0.16
Identities = 52/365 (14%), Positives = 93/365 (25%), Gaps = 159/365 (43%)
Query: 10 GAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHF 69
G+ Q+ G M GM + Y + + V + D
Sbjct: 1625 GS-QEQG-------------M---GMDL-Y---KTSKAAQ------DVWNRADN------ 1651
Query: 70 HLDHCGALPYFTEMFGYA-------GPIYMT-HPTKAIAPILLEDFRKISVEKKGDSNFF 121
+F + +G++ P+ +T H + E++ + E D
Sbjct: 1652 ---------HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 122 TSQMNILKIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRI---SYIVENDLIIDAV 178
T + I K + TS + L + Q + DL
Sbjct: 1703 TEK-------IFKEINEHSTSYTFRSEKGLL---SATQFTQPALTLMEKAAFEDL----- 1747
Query: 179 TKKLNTLNIDIVYQKKVA-HYELPEQPLNNVKIKFES-GE-----------SIECKLLLG 225
K + D A H S GE SIE
Sbjct: 1748 -KSKGLIPADAT----FAGH----------------SLGEYAALASLADVMSIE------ 1780
Query: 226 TDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEF 285
V +G+ V + R+ + G +A+ P
Sbjct: 1781 -SLVEV-VF-------------YRGMTMQVAVPRDELGRSNY------GMIAINP----- 1814
Query: 286 SSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTG 345
V A+ + A + V+ + +++ N +N+
Sbjct: 1815 -GRVAASFSQEAL-------QYVVERVG------KRTGWLVEIV-----N----YNVE-- 1849
Query: 346 NEQVV 350
N+Q V
Sbjct: 1850 NQQYV 1854
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A
{Bacillus subtilis}
Length = 555
Score = 60.2 bits (147), Expect = 9e-10
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 13/113 (11%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKF------PDFKFIAPQG 55
+ V LG ++G++ V + +++D G+ + +D PD+ ++
Sbjct: 7 DQTAVFALGGLGEIGKNTYAVQFQDEIVLIDAGI--KFPEDELLGIDYVIPDYTYLVKNE 64
Query: 56 PVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFR 108
D I L I+H H DH G +PY P+Y + LE+
Sbjct: 65 ---DKIKGLFITHGHEDHIGGIPYLLRQVNI--PVYGGKLAIGLLRNKLEEHG 112
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 58.1 bits (141), Expect = 3e-09
Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 44/236 (18%)
Query: 208 VKIKFESG---ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNR 264
+ FE ++C + G DG R ++ + ++ +PP
Sbjct: 137 PYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVS 196
Query: 265 TAWQRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNE 324
AL S + +Q+P V+ + E
Sbjct: 197 HELIYANHPRGFALCSQRSATRSQYY----------VQVPLSEKVEDWSDE--------- 237
Query: 325 SIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSV---RYIGPGCA 381
+E EKS A S
Sbjct: 238 ----------RFWTELKARLPSEVAEKLVTGPSLEKSIAPL-----RSFVVEPMQHGRLF 282
Query: 382 LLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQR 437
L GD+AH + P +G+NL D++ L +L ++ G E L +Y +I R
Sbjct: 283 LAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSAICLR 334
Score = 30.4 bits (69), Expect = 1.6
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 510 QYDVVISGGGMIGTTLACAIAQ 531
+ V I G G G L + +
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHK 23
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 56.2 bits (136), Expect = 7e-09
Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 33/120 (27%)
Query: 2 SEIKVTPLGAG-----QDVGRSCILVSMGGKNIMLDCG--------MHMGYHDDRKFPDF 48
+ +K+T +G S L G +++DCG ++ D
Sbjct: 23 NAMKMTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGVLAQLQKYITPSD------- 75
Query: 49 KFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYA-GPIYMTHPTKAIAPILLEDF 107
ID +++SH+H DH + E+
Sbjct: 76 ------------IDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENG 123
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 57.3 bits (138), Expect = 8e-09
Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 45/230 (19%)
Query: 217 SIECKLLLGTDGARSQVRNAMNVQYSN--------WSYDQKGIVATVKISTSPPNRTAWQ 268
++E ++ G+ + + V+ + WSY T +
Sbjct: 174 TVESDFVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSY-----FKLKDPFEGDLKGTTYS 228
Query: 269 RFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQV 328
G V ++P+ D+ S+ + + + ++F + ++ A+ + +
Sbjct: 229 ITFEDGWVWMIPIKDDLYSVGLVVDRSKSAEVREQGADAFYSSTLAKC---AKAMDILGG 285
Query: 329 ATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAH 388
A + ++V + S + + L GD+A
Sbjct: 286 AEQV--------------DEVRIVQDWS-------------YDTEVFSADRFFLCGDAAC 318
Query: 389 RIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRE 438
PL QGV+L +G Y +
Sbjct: 319 FTDPLFSQGVHLASQSAVSAAAAIDRITRHGDE--KDAVHAWYNRTYREA 366
Score = 35.3 bits (81), Expect = 0.065
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546
+ V I GGG G+ + + + + E
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHK----LGHDVTIYERS 55
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 57.0 bits (138), Expect = 1e-08
Identities = 31/197 (15%), Positives = 52/197 (26%), Gaps = 45/197 (22%)
Query: 216 ESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQK--GIVATVKISTSPPNRTAWQRF--- 270
+ L+G DG RS VR ++ + G++ +S T +
Sbjct: 168 YDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHH 227
Query: 271 -TPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVA 329
GT D +L P+ + + V+ + + P E +
Sbjct: 228 PEFKGTFGPTDRPDRH-TLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKPE-LVDI 285
Query: 330 TKFTHN--VLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSA 387
+ + E + G RV L GD+A
Sbjct: 286 QGWEMAARIAERW--REG-------RVF--------------------------LAGDAA 310
Query: 388 HRIHPLAGQGVNLGFGD 404
P G N D
Sbjct: 311 KVTPPTGGMSGNAAVAD 327
Score = 32.0 bits (73), Expect = 0.64
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 510 QYDVVISGGGMIGTTLACAIAQ 531
+ DV++ G G+ G + A +A+
Sbjct: 5 EVDVLVVGAGLGGLSTAMFLAR 26
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 2e-08
Identities = 67/579 (11%), Positives = 161/579 (27%), Gaps = 156/579 (26%)
Query: 68 HFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRK-ISVEKKGDS--NFFTSQ 124
H H+D E G + K I + + F + D + + +
Sbjct: 4 HHHMD--------FET----GE--HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE 49
Query: 125 M--NILKIQ--------ILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQ---DRISY-IVE 170
+I+ + + ++ K V +E NY+ I +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMV-----QKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 171 NDLIIDAVTKKLNTL-NIDIVYQKKVAHYELP-EQPLNNVKIKFESGESIECKLLLGTDG 228
++ ++ + L N + V+ K Y + QP ++ + L+ G G
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAK----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 229 ARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAW----QRFTPSGTVALL-PLSD 283
+ A++V + K+ + W +P + +L L
Sbjct: 161 SGKTWV-ALDV------------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 284 EFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESI----QVATKFTHNVLEF 339
+ W + +++ +++ S L + V
Sbjct: 208 QIDP-NWTSRSDHSSN-IKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNA---KAWNA 261
Query: 340 FNLS------TGNEQVVPPRVMSVEEKSRAA---FPLGFGHS------VRYIGPGCALLG 384
FNLS T +QV +S + + + ++Y+ L
Sbjct: 262 FNLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 385 DSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQRENLPV-- 442
+P + + AES+ +G + ++ + +
Sbjct: 320 REVLTTNPRR--------------LSIIAESIRDG--LATWDNWKHVNCDKLTTIIESSL 363
Query: 443 -MLSIDLMYRVYRS-SLTP--VKILGNLGFQLVNAVRPIK--SIL-------CDIFMRTS 489
+L +++ S+ P I P S++ + +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHI-------------PTILLSLIWFDVIKSDVMVVVNK 410
Query: 490 MEKVTLLV-WNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
+ K +L+ S+ + + L + L +++
Sbjct: 411 LHKYSLVEKQPKESTISI----PSIYLE--------LKV---KLENEYALHRSIVD---- 451
Query: 549 KSLHFSKSSSYSNRVSSINSSSKQLFETIGAWDHIESTR 587
H++ ++ + + + IG H+++
Sbjct: 452 ---HYNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIE 485
Score = 49.9 bits (118), Expect = 2e-06
Identities = 68/593 (11%), Positives = 163/593 (27%), Gaps = 211/593 (35%)
Query: 35 MHMGYHDDRKFPDF--KFIAPQGPVTDMIDCL--IISHFHLDHCGALPYFTE----MFGY 86
Y D F F+ D+ D I+S +DH +F
Sbjct: 14 HQYQYKD--ILSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW- 69
Query: 87 AGPIYMTHPTKAIA-----------PILLEDFRKISVEKKGDSNFFTSQMN--------- 126
++ + + L+ + + + + Q +
Sbjct: 70 ---TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 127 -----------------ILKIQILKYVMI---KGTSKVWGHSSDDLLEFNKAHNYQDRIS 166
+L+++ K V+I G+ K W + D L + +I
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIF 185
Query: 167 YI-VENDLIIDAVTKKLNTL--NIDIVYQKKVAHYELPEQPLNNVKIKFE---------- 213
++ ++N + V + L L ID + + H + +++++ +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 214 ---------SGESIE-----CKLLLGT------DGARSQVRNAMNVQYSNWSYDQ---KG 250
+ ++ CK+LL T D + +++ + + + K
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 251 IVATV-----------KISTSP-------------PNRTAWQRF----------TPSGTV 276
++ ++T+P W + ++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHVNCDKLTTIIESSL 363
Query: 277 ALLPLSDEFSSLVWATT--PENAK---ALLQM----PGESFVDALNSEFNKPAELNE--- 324
+L E+ + + P +A LL + +S V + ++ +K + + +
Sbjct: 364 NVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 325 -------SIQVATKFT-------HN-VLEFFNLSTG--NEQVVPPRV-----------MS 356
SI + K H +++ +N+ ++ ++PP + +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 357 VEEKSR--AAFP-----LGF-GHSVRYIGPGCALLGDSAH-------------RIHP--- 392
E F F +R+ G + P
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 393 ---------LAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQ 436
L NL L++++ + + E+ +Q
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIA---------LMAEDEAIFEEAHKQ 586
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 53.1 bits (128), Expect = 1e-07
Identities = 38/263 (14%), Positives = 76/263 (28%), Gaps = 38/263 (14%)
Query: 187 IDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQYSNWSY 246
K + Q V+++F G E ++G DG S VR + ++
Sbjct: 112 ERYHTSKCLVGLS---QDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIEPTYA- 167
Query: 247 DQKGIVA---TVKISTSP--------PNRTAWQRFTPSGTVALLPLSDEFSSLVWATTPE 295
G V ++ T G + P+ ++ +
Sbjct: 168 ---GYVTWRGVLQPGEVADDVWNYFNDKFTYG--LLDDGHLIAYPIPGRENAESPRLNFQ 222
Query: 296 NAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVM 355
+ + P + P ++ + HN+ +F + + V+
Sbjct: 223 WYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNP----HNLRQFHSKGESLFKPFRDLVL 278
Query: 356 SVEEKSRAAF---PLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLS 412
+ + R + L+GD+A P A G D L
Sbjct: 279 NASSPFVTVVADATVD-----RMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTL---- 329
Query: 413 AESVSNGYPIGHPESLTKYESIR 435
AE + + + SL +E+ +
Sbjct: 330 AEVFTKNHDL--RGSLQSWETRQ 350
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 52.9 bits (126), Expect = 1e-07
Identities = 33/240 (13%), Positives = 64/240 (26%), Gaps = 49/240 (20%)
Query: 208 VKIKFES-------GESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTS 260
+ I+FES + L++ +G + + Y + S
Sbjct: 113 IAIRFESPLLEHGELPLADYDLVVLANGVNHKTAHFTEALVPQVDY-GRNKYIWYGTSQL 171
Query: 261 PPNRTAWQRFTPSGTVAL--LPLSDEFSSLVWATTPE--NAKALLQMPGESFVDALNSEF 316
R SD S+ + + E L +M E+ + + F
Sbjct: 172 FDQMNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVF 231
Query: 317 NKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYI 376
+ ++ F LS +++ +++
Sbjct: 232 ---QAELGGHGLVSQPGLGWRNFMTLS--HDRCHDGKLV--------------------- 265
Query: 377 GPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQ 436
LLGD+ H G G + LV+ G P +L ++E
Sbjct: 266 -----LLGDALQSGHFSIGHGTTMAVVVAQLLVKALCT------EDGVPAALKRFEERAL 314
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein,
metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium
loti} PDB: 3aj0_A
Length = 274
Score = 52.0 bits (125), Expect = 2e-07
Identities = 23/108 (21%), Positives = 32/108 (29%), Gaps = 28/108 (25%)
Query: 1 MSEIKVTPLGAGQ---DVGRS---------------CILVSMGGKNIMLDCGMHMGYHDD 42
MS+ KV L G D IL+ ++D G +
Sbjct: 1 MSDTKVYLLDGGSLVLDGYHVFWNRGPGGEVRFPVYSILIEHAEGRFLIDTGYDYDHVMK 60
Query: 43 RKFPDFKFIAPQGPVTDM----------IDCLIISHFHLDHCGALPYF 80
+ + ID ++ SHFH DHCG YF
Sbjct: 61 VLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCGGNKYF 108
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 52.3 bits (126), Expect = 3e-07
Identities = 50/253 (19%), Positives = 80/253 (31%), Gaps = 56/253 (22%)
Query: 193 KKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMN-----VQYSNWSYD 247
K+V E + + V + F G S LL+ DG+ S +R + +Y+
Sbjct: 146 KRVTRCE---EDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYA----- 197
Query: 248 QKGIVA---TVKISTSPPNRTAWQRFT-PSGTVALLPLSD-EFSSLVWATTPENAKALLQ 302
G V V+I + W F V+L+P+S F P
Sbjct: 198 --GYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAE--- 252
Query: 303 MPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSR 362
++ L+ F A +Q ++ + + + +E
Sbjct: 253 -DRDTLRADLSRYF---AGWAPPVQ-------KLIA----ALDPQTTNRIEIHDIE---- 293
Query: 363 AAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPI 422
P R + ALLGD+ H P GQG D L I
Sbjct: 294 ---PFS-----RLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVL----GAVFRQTRDI 341
Query: 423 GHPESLTKYESIR 435
+L +YE+ R
Sbjct: 342 --AAALREYEAQR 352
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 50.5 bits (121), Expect = 5e-07
Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 36/116 (31%)
Query: 1 MSEIKVTPLGAGQ---DVGR---------------SCILVSMGGKNIMLDCGMHMGYHDD 42
M+ K+ + AG+ D C L+ I++D GM ++
Sbjct: 5 MTVKKLYFIPAGRCMLDHSSVNSALTPGKLLNLPVWCYLLETEEGPILVDTGMPESAVNN 64
Query: 43 RKFPDFKFIAPQGPVTDM------------------IDCLIISHFHLDHCGALPYF 80
+ F+ Q + +I SH H DH G F
Sbjct: 65 EGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAF 120
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 51.1 bits (123), Expect = 5e-07
Identities = 37/275 (13%), Positives = 83/275 (30%), Gaps = 64/275 (23%)
Query: 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESIECKLLLGTDGARS 231
D +++ L +DI + + ++ ++GE +E L++G DG S
Sbjct: 111 DALVNRARA----LGVDISVNSEAVAAD------PVGRLTLQTGEVLEADLIVGADGVGS 160
Query: 232 QVRNAMNVQ-------YSNWSYDQKGIVATVKISTSP----PNRTAWQRFTPSGTVALLP 280
+VR+++ + + IV +K W + + P
Sbjct: 161 KVRDSIGFKQDRWVSKDGLI----RLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSP 216
Query: 281 LSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKFTHNVLEFF 340
++ L P +P + ++ F L +
Sbjct: 217 CNENELYLG-LMAPAADPRGSSVPID--LEVWVEMF---PFLEPCLI------------- 257
Query: 341 NLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNL 400
+ + ++ + AL+GD+AH + P QG
Sbjct: 258 -------EAAKLKTARYDKYETTKLD-------SWTRGKVALVGDAAHAMCPALAQGAGC 303
Query: 401 GFGDIACLVQLSAESVSNGYPIGHPESLTKYESIR 435
+ L ++ + G + ++L +E+
Sbjct: 304 AMVNAFSL----SQDLEEGSSV--EDALVAWETRI 332
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine
lactone, DI-nuclear zinc center quenching, AIIB,
phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Length = 276
Score = 49.1 bits (117), Expect = 1e-06
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 22/99 (22%)
Query: 19 CILVSMGGKNIMLDCGMHMGYHDDRK--FPDFKFIAPQGPVTDM---------------I 61
L+ ++ D G H + AP ++ I
Sbjct: 45 AYLIQCTDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDI 104
Query: 62 DCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIA 100
+++SH H DH G + YF + + A A
Sbjct: 105 STVVLSHLHNDHAGCVEYFGK-----SRLIAHEDEFATA 138
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 49.8 bits (119), Expect = 1e-06
Identities = 28/213 (13%), Positives = 63/213 (29%), Gaps = 39/213 (18%)
Query: 214 SGESIECKLLLGTDGARSQVRNAMNVQYSNWSYDQKGIVATVKISTSPP------NRTAW 267
+ IE + ++ G + + + ++ + +K P NR
Sbjct: 149 NKREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITA 208
Query: 268 QRFTPSGTVALLPLSDEFSSLVWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQ 327
P + ++P S+ +S+ + P P E + +
Sbjct: 209 VVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIAN------------- 255
Query: 328 VATKFTHNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSV-RYIGPGCALLGDS 386
++ E F E + PR + G+ S + G G L G++
Sbjct: 256 -----EGHIAERF---KSEEFLFEPRTIE-----------GYAISASKLYGDGFVLTGNA 296
Query: 387 AHRIHPLAGQGVNLGFGDIACLVQLSAESVSNG 419
+ P+ G + +L+ + +
Sbjct: 297 TEFLDPIFSSGATFAMESGSKGGKLAVQFLKGE 329
Score = 38.2 bits (89), Expect = 0.006
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+ DV++ G G GT A + + + ++E
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNK----SGFKVKIVEKQK 38
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR
initiative, PSI, joint center for structural genomics,
ELEC transport; HET: MSE; 1.80A {Thermotoga maritima}
SCOP: c.23.5.1 d.157.1.3
Length = 410
Score = 47.9 bits (114), Expect = 6e-06
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 21 LVSMGGKNIMLDCGMHMGYHDDRKFPDF-KFIAPQGPVTDMIDCLIISHFHLDHCGALPY 79
LV + G N+++D +F ++ + I +I++H DH G+LP
Sbjct: 56 LVKLNGANVLIDGW------KGNYAKEFIDALSKIVDPKE-ITHIIVNHTEPDHSGSLPA 108
Query: 80 FTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDS 118
+ G+ I ++ K + V K G+
Sbjct: 109 TLKTIGHDVEIIASNFGKRLLEGFYGIKDVTVV-KDGEE 146
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
metal-dependent hydrolases of the beta-lactamase
superfamily hydrolase; 2.10A {Thermoanaerobacter
tengcongensis}
Length = 284
Score = 47.0 bits (111), Expect = 7e-06
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 19 CILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALP 78
+L+ G K I++D G F K G I ++++H H DH G L
Sbjct: 35 SLLLKKGNKEIVVDTGQ------SENF--IKNCGLMGIDVGRIKKVVLTHGHYDHIGGLK 86
Query: 79 YFTEMFGYA 87
E
Sbjct: 87 GLLERNPEV 95
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.97A {Thermotoga maritima}
SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 46.5 bits (111), Expect = 1e-05
Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 26/99 (26%)
Query: 18 SCILVSMGGKNIMLDCG----MHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDH 73
+ + I+ D G +G K FK++ ++H H+DH
Sbjct: 11 FSTWIYYSPERILFDAGEGVSTTLG----SKVYAFKYVF-------------LTHGHVDH 53
Query: 74 CGALPYF--TEMFGYAGPIYMTHPTKAIAPILLEDFRKI 110
L G P P +
Sbjct: 54 IAGLWGVVNIRNNGMGD---REKPLDVFYPEGNRAVEEY 89
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate
utilization, alkylphosphonate uptake; 1.40A {Escherichia
coli} PDB: 3p2u_A
Length = 258
Score = 46.2 bits (110), Expect = 1e-05
Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 17 RSCILVSMGGKNIMLDCGMH--MGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHC 74
+V ++D G+H +++H+H+DH
Sbjct: 39 PCSGVVKFNDAITLIDAGLHDLADRWSPGS----------------FQQFLLTHYHMDHV 82
Query: 75 GALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQILK 134
L G P+Y + + + F + L++ L
Sbjct: 83 QGLFPLRWGVGDPIPVYGPPDEQGCDDLF--KHPGLLDFSHTVEPFVVFDLQGLQVTPLP 140
Query: 135 Y 135
Sbjct: 141 L 141
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A
{Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A*
1l9y_A
Length = 263
Score = 46.0 bits (109), Expect = 2e-05
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 18 SCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGAL 77
+ L+ NI+++ + + I G L+ISH H DH
Sbjct: 26 ASYLIVTPRGNILINSDLEANVPMIKAS-----IKKLGFKFSDTKILLISHAHFDHAAGS 80
Query: 78 PYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFT 122
+ + ++L + S +FT
Sbjct: 81 ELIKQQTK--AKYMVMD---EDVSVILSGGKSDFHYANDSSTYFT 120
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET:
MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB:
2fk6_A*
Length = 320
Score = 45.9 bits (109), Expect = 2e-05
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 35/119 (29%)
Query: 4 IKVTPLGAGQDV---GR--SCILVSM---GGKNIMLDCG-------MHMGYHDDRKFPDF 48
+++ LG G + R + + + + + DCG +H K
Sbjct: 1 MELLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTTI----KPRK- 55
Query: 49 KFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDF 107
I+ + I+H H DH LP + G P ++ F
Sbjct: 56 ------------IEKIFITHMHGDHVYGLPGLLGSRSFQGG---EDELTVYGPKGIKAF 99
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z,
hydrolase, metal- binding, endonuclease, tRNA
processing, zinc; 2.9A {Escherichia coli} SCOP:
d.157.1.7
Length = 306
Score = 45.5 bits (108), Expect = 2e-05
Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 36/120 (30%)
Query: 4 IKVTPLGAGQDV---GR--SCILVSMGGKN----IMLDCG-------MHMGYHDDRKFPD 47
+ + LG V R + IL+++ + DCG +H +
Sbjct: 2 MNLIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAF----NPGK 57
Query: 48 FKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDF 107
+D + ISH H DH LP +G P P + +F
Sbjct: 58 -------------LDKIFISHLHGDHLFGLPGLLCSRSMSGI---IQPLTIYGPQGIREF 101
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 45.4 bits (108), Expect = 4e-05
Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 60/284 (21%)
Query: 172 DLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESG----ESIECKLLLGTD 227
+++ AV ++L + V E + V I G +++ +L+G D
Sbjct: 111 MILLAAVRERLG--QQAVRTGLGVERIE---ERDGRVLIGARDGHGKPQALGADVLVGAD 165
Query: 228 GARSQVRNAMN-----VQYSNWSYDQKGIVA---TVKISTSPPNRTAWQRF-TPSGTVAL 278
G S VR ++ + + GI + +T +
Sbjct: 166 GIHSAVRAHLHPDQRPLSHG-------GITMWRGVTEFDRFLDGKTMIVANDEHWSRLVA 218
Query: 279 LPLSDEFSSL------VWATTPENAKALLQMPGESFVDALNSEFNKPAELNESIQVATKF 332
P+S ++ P A L + N+ L + + +
Sbjct: 219 YPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADW---------NRDGRLEDVLPFFADW 269
Query: 333 THNVLEFFNLSTGNEQVVPPRVMSVEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHP 392
+ +L T N+ ++ ++ + PL + LLGD+AH ++P
Sbjct: 270 DLGWFDIRDLLTRNQLILQYPMVDRD-------PLP-----HWGRGRITLLGDAAHLMYP 317
Query: 393 LAGQGVNLGFGDIACL-VQLSAESVSNGYPIGHPESLTKYESIR 435
+ G + D L L+ + +L +YE R
Sbjct: 318 MGANGASQAILDGIELAAALARNA-------DVAAALREYEEAR 354
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase,
metal-binding, tRNA processing, zinc-binding,
catabolism; 1.70A {Homo sapiens}
Length = 368
Score = 44.5 bits (105), Expect = 7e-05
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 22/113 (19%)
Query: 4 IKVTPLGAGQDV-----GRSCILVSMGGKNIMLDCG---MHMGYHDDRKFPDFKFIAPQG 55
+ VT LG G G S +++ G+ + DCG K
Sbjct: 1 MDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGR-------- 52
Query: 56 PVTDMIDCLIISHFHLDHCGALP-YFTEMFGYAGPIYMTHPTKAIAPILLEDF 107
I + I+H H DH LP + +G + P + P+ L DF
Sbjct: 53 -----ITKIFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDF 100
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme,
sulfonamide complex hydrolase-hydrolase inhibitor
complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB:
3lvz_A* 2gmn_A
Length = 294
Score = 43.8 bits (103), Expect = 8e-05
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 18 SCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGAL 77
+ ++ I++D M + IA G I ++ +H HLDH G
Sbjct: 56 AVYVIKTSQGLILMDTAMPQSTGMIKDN-----IAKLGFKVADIKLILNTHAHLDHTGGF 110
Query: 78 PYFTEMFGYAGPIYMTHPTKAIAPILLEDFR 108
+ G + P+L +
Sbjct: 111 AEIKKETG--AQLVA-GE--RDKPLLEGGYY 136
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic
resistance, binuclear zinc, hydrolase; 1.70A
{Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB:
2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A*
2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Length = 269
Score = 43.4 bits (102), Expect = 1e-04
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 1 MSEIKVTP-LGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTD 59
M+ +++ + +LV ++LD GM + +G
Sbjct: 21 MAPLQIADHTWQIGTEDLTALLVQTPDGAVLLDGGMPQMASHLLDN-----MKARGVTPR 75
Query: 60 MIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHP 95
+ +++SH H DH G + G +
Sbjct: 76 DLRLILLSHAHADHAGPVAELKRRTG--AKVAANAE 109
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 43.5 bits (103), Expect = 1e-04
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 19 CILVSMGGKNIMLDCGMHMGYHDDRKFPDFKF---------IAPQGPVTDMIDCLIISHF 69
IL+ N+++D G+ G +++ +F +A ID ++++H
Sbjct: 50 PILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHM 109
Query: 70 HLDHCGAL 77
H DH L
Sbjct: 110 HFDHAAGL 117
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance,
acquired B3, drug binding; 1.40A {Pseudomonas
aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Length = 303
Score = 43.1 bits (101), Expect = 2e-04
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 16 GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCG 75
G S +LV+ +I++D I G + + ++ SH H DH G
Sbjct: 57 GISALLVTSDAGHILVDAAT-PQAGPQIL----ANIRALGFRPEDVRAIVFSHEHFDHAG 111
Query: 76 ALPYFTEMFGYAGPIYMTHP 95
+L + G P+Y P
Sbjct: 112 SLAELQKATG--APVYARAP 129
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling
protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB:
2q0j_A 2q0i_A 3dh8_A*
Length = 303
Score = 42.9 bits (101), Expect = 2e-04
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPT 96
+ +I+H H DHCG LPY +
Sbjct: 64 VHYWLITHKHYDHCGLLPYLCPRLPNV-QVLA-SER 97
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 42.4 bits (100), Expect = 2e-04
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 18 SCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGAL 77
+ + + + I++D G + + + G D I ++ +H HLDH
Sbjct: 36 TVVYLEHKDRRIIIDPGN---LSSMDELEEK--FSELGISPDDITDVLFTHVHLDHIFNS 90
Query: 78 PYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKI 110
F Y +Y T + I+ + K+
Sbjct: 91 VLFENATFYVHEVYKTKNYLSFGTIVGRIYSKV 123
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural GE consortium, NESG,
NSR435A, DFA5, electron transport; 1.80A {Nostoc SP}
Length = 262
Score = 42.1 bits (99), Expect = 3e-04
Identities = 11/101 (10%), Positives = 28/101 (27%), Gaps = 18/101 (17%)
Query: 24 MGGKNIMLDCGMHMGYHDDRKFPDF-----KFIAPQGPVTDMIDCLIISHFHLDHCGALP 78
G K ++D + + + + +D +I+ HF +
Sbjct: 49 EGDKTAIIDPP------VESFMKIYLEALQQTVNL-----KKLDYVILGHFSPNRIPTFK 97
Query: 79 YFTEMFGYAGPIYMTHPTKA-IAPILLEDFRKISVEKKGDS 118
E+ + P + +D I + ++
Sbjct: 98 ALLELAPQI-TFVCSLPAAGDLRAAFPDDNLNILPMRGKET 137
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 41.8 bits (98), Expect = 4e-04
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILL-EDFRKISVEKKGDS 118
I ++++H DH +L F A T + IL + + +
Sbjct: 78 IKYVVMNHAEGDHASSLKDHYHKFTNA-TFVCTKKCQEHLKILYGMEKATWLIVDDKYT 135
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 41.4 bits (96), Expect = 7e-04
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 377 GPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQ 410
G LGD + P+ GQG N+ L +
Sbjct: 307 GKTIIGLGDIQATVDPVLGQGANMASYAAWILGE 340
>3adr_A Putative uncharacterized protein ST1585; quorum sensing,
quinolone signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 40.5 bits (95), Expect = 7e-04
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 16/78 (20%)
Query: 18 SCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGAL 77
+ ++ +M+D G+ D +D ++++H H+DH G L
Sbjct: 21 TVYVMCGEKLTVMIDAGVSNSIADFSFLDK-------------LDYIVLTHLHIDHIGLL 67
Query: 78 PYFTEMFGYAGPIYMTHP 95
P +++ + +
Sbjct: 68 PELLQVYK--AKVLV-KS 82
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida} PDB: 1xto_A
Length = 321
Score = 40.9 bits (95), Expect = 9e-04
Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 34/125 (27%)
Query: 1 MSEIKVTPLGAGQDVG-------------------------RSCILVSMGGKN-IMLDCG 34
M + + LG+ G +S I +S G + I+ +
Sbjct: 1 MM-MYIQVLGSAAGGGFPQWNCNCVNCKGYRDGTLKATARTQSSIALSDDGVHWILCNAS 59
Query: 35 MHMGYHDDRKFPDFKFIAPQ-GPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMT 93
+ F + P I+ +++ +DH L E + ++ T
Sbjct: 60 PDIRAQ----LQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGCPH--QVWCT 113
Query: 94 HPTKA 98
Sbjct: 114 DMVHQ 118
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 40.9 bits (96), Expect = 9e-04
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 19 CILVSMGGKNIMLDCGMHMGYHDDRKFPDF-KFIAPQGPVTDMIDCLIISHFHLDHCG 75
LV+ G K +++D G + G + +D + I+H H DH G
Sbjct: 99 GYLVNTGSKLVLVDTGA--AGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVG 154
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidore; HET: FMN; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 2ohi_A* 2ohj_A*
Length = 404
Score = 41.0 bits (96), Expect = 9e-04
Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 14/104 (13%)
Query: 21 LVSMGGKNIMLDCGMHMGYHDDRKFPDF----KFIAPQGPVTDMIDCLIISHFHLDHCGA 76
LV ++D F + + Q + +D +I +H DH G
Sbjct: 39 LVCGDEGVALIDNS------YPGTFDELMARVEDALQQVGMER-VDYIIQNHVEKDHSGV 91
Query: 77 LPYFTEMFGYAGPIYMTHPTKAIAPILLEDFR--KISVEKKGDS 118
L F A PIY T R + K GD
Sbjct: 92 LVELHRRFPEA-PIYCTEVAVKGLLKHYPSLREAEFMTVKTGDV 134
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 40.6 bits (95), Expect = 0.001
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 357 VEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGF--GDIACLVQLSAE 414
+ K A P G ++GDS ++P+ G G G A A+
Sbjct: 262 LLVKGGALVPTR-RPLYTMAWNGIIVIGDSGFTVNPVHGGGKGSAMISGYCA------AK 314
Query: 415 SVSNGYPIG--HPESLTKYESIRQRENLPVMLSIDLMYRVYR 454
++ + + G L E S+D+ R +
Sbjct: 315 AILSAFETGDFSASGLWDMNICYVNEYGAKQASLDIFRRFLQ 356
Score = 37.1 bits (86), Expect = 0.013
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
+YDV+I GGG G++ A +++ + L IL+++S P
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSR----RGLKILLVDSKPW 40
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 39.8 bits (92), Expect = 0.002
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550
+YDVVI G G IG T A + + M + G S
Sbjct: 46 KYDVVIVGSGPIGCTYARELVG----AGYKVAMFDIGEIDS 82
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics,
structural genomics center for infectious disease; HET:
5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB:
3qh8_A* 3py6_A* 3py5_A*
Length = 293
Score = 38.9 bits (91), Expect = 0.003
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 20/90 (22%)
Query: 17 RSCILV-----SMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHL 71
R+ +LV +++D G PDF+ V +D + +H H
Sbjct: 63 RASLLVERYDAEGNNTVVVIDTG-----------PDFRMQMIDSGVHM-LDAAVYTHPHA 110
Query: 72 DHCGALPY---FTEMFGYAGPIYMTHPTKA 98
DH + + G +Y T+
Sbjct: 111 DHIHGIDDLRTYVVDNGRLMDVYANRLTRN 140
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface
entropy reduction, ISFI, beta- lactamase superfamily,
PSI-2; 2.75A {Thermotoga maritima}
Length = 267
Score = 39.0 bits (90), Expect = 0.003
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 59 DMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDS 118
D+ ++ISH H DH G L Y + + + D+ ++ G
Sbjct: 60 DLPKDVLISHGHYDHAGGLLYLSGKRVWLRK-EALDQKYSGERYAGADWNEVLYYNTGK- 117
Query: 119 NFFTSQMNILKIQILKYVMIKGTSKVW 145
F ++ + + KV
Sbjct: 118 -FVIERITEIGKNMFLLGPANLRGKVP 143
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 38.3 bits (89), Expect = 0.006
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPT-KAIAPILLEDFRKISVEKKGDS 118
ID L+I H LDH GALP E I+ + KA+ + V K G++
Sbjct: 72 IDYLVIQHLELDHAGALPALIEACQPE-KIFTSSLGQKAMESHFHYKDWPVQVVKHGET 129
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 38.2 bits (89), Expect = 0.006
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 24 MGGKNIMLDCGMHMGYHDDRKFPDF-KFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTE 82
+ K ++D + + + +D L+++H DH GA P E
Sbjct: 42 VDDKTALVDTV------YEPFKEELIAKLKQIKDPVK-LDYLVVNHTESDHAGAFPAIME 94
Query: 83 MFGYAGPIYMTHPTKAIAPILL--EDFRKISVEKKGDS 118
+ A + T DF V K G S
Sbjct: 95 LCPDA-HVLCTQRAFDSLKAHYSHIDFNYTIV-KTGTS 130
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 38.2 bits (89), Expect = 0.007
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
++D V+ G G++G A + S+L++++G
Sbjct: 22 PRFDYVVVGAGVVGLAAAYYLKVWS---GGSVLVVDAGH 57
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus}
Length = 317
Score = 37.8 bits (88), Expect = 0.008
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLED 106
+ ++++H H DH G +F +++ A +
Sbjct: 63 VKTILLTHHHPDHYGLSGFFEG---LGARVFLHEEEFARGHRFWRE 105
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 37.4 bits (85), Expect = 0.013
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 500 ARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550
A + +D+V+ G G +G A + Q S+L++E G +
Sbjct: 26 AHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQ--LAPGRSLLLVEEGGLPN 74
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 37.1 bits (87), Expect = 0.015
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSS 558
D ++ G G++G AIA+ +L+ E+ S +S
Sbjct: 3 TDIDCIVIGAGVVG----LAIARALAAGGHEVLVAEAAEGIGTGTSSRNS 48
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 36.7 bits (85), Expect = 0.019
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 510 QYDVVISGGGMIGTTLACAIAQ--NPTLKDLSILMIESGPEKSLH 552
+ DVVI G G G + A + Q KDL + ++E H
Sbjct: 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH 79
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 36.6 bits (84), Expect = 0.021
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
G V+ G G A + + + LM+E G
Sbjct: 3 GGYVPAVVIGTGYGAAVSALRLGE----AGVQTLMLEMGQL 39
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for
structural genomics, JCSG; 2.30A {Parabacteroides
distasonis atcc 8503}
Length = 235
Score = 36.1 bits (84), Expect = 0.022
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 25/77 (32%)
Query: 2 SEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM- 60
E+ +T + ++++ +I +D P ++ T
Sbjct: 28 KELTITFIK------HGSLMLTYDNHSIQVD-------------P----VSEYADYTTFP 64
Query: 61 -IDCLIISHFHLDHCGA 76
D ++I+H H DH
Sbjct: 65 KADIILITHEHGDHLDP 81
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like
fold, MCSG, structural PSI-2, protein structure
initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Length = 379
Score = 36.5 bits (84), Expect = 0.022
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 25/98 (25%)
Query: 3 EIKVTPLGAGQD----VGRSCILVSMGGKNIMLD------------CGMHMGYHDDRKFP 46
EI+ T + +G + I + G + + H +
Sbjct: 51 EIEQTVVEPNTFSMWWLGCTGIWLKSAGNTNLSIDFWCGTGKKTQKNRLMNTQHQMMRMG 110
Query: 47 DFKFIAPQGPVTDM---------IDCLIISHFHLDHCG 75
+ + P + ID ++ SH H DH
Sbjct: 111 GVEALQPNLRTSIFPLDPFAIKEIDAVLASHDHADHID 148
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 36.2 bits (84), Expect = 0.028
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
+ YDV++ GGG G+T A A+ L LMIE PE
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAK----YGLKTLMIEKRPE 38
Score = 33.8 bits (78), Expect = 0.13
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 11/101 (10%)
Query: 357 VEEKSRAAFPLGFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGF--GDIACLVQLSAE 414
+ + PG L+GD+A I P+ G G+ G A A+
Sbjct: 257 DIQLVTGGVSVSKVKMPIT-MPGLMLVGDAARLIDPITGGGIANAIVSGMYA------AQ 309
Query: 415 SVSNGYPIGH--PESLTKYESIRQRENLPVMLSIDLMYRVY 453
P+ + KYE + + L +
Sbjct: 310 VTKEAIESNDYSPQMMQKYEKLIKERFERKHLRNWVAKEKL 350
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 35.9 bits (82), Expect = 0.031
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 501 RYYSSL-GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
RY+ L DV+I G G G + A IA+N DL + +IES
Sbjct: 55 RYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKN--RPDLKVCIIESSVA 101
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 35.9 bits (82), Expect = 0.039
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
++ G G G A + Q + ++E G
Sbjct: 12 VPALVIGSGYGGAVAALRLTQ----AGIPTQIVEMGRS 45
>3rpc_A Possible metal-dependent hydrolase; structural genomics,
PSI-biology, protein structure initiati midwest center
for structural genomics; 1.49A {Veillonella parvula}
Length = 264
Score = 35.1 bits (81), Expect = 0.052
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 21/74 (28%)
Query: 15 VGRSCILVSMGGKNIMLD-----CGMHMGYHDDRKFPDFKFIAPQGPVTDM--------- 60
+ + +++ ++D + G F + P+ D+
Sbjct: 10 IRNATGKLTIKNTTFLIDPFLAPKDTYPG------FEGTFNYQQRMPMVDLPLSMDDLLS 63
Query: 61 -IDCLIISHFHLDH 73
+ ++++H HLDH
Sbjct: 64 NVTAVVVTHTHLDH 77
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 34.5 bits (79), Expect = 0.088
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 25/98 (25%)
Query: 3 EIKVTPLGAGQDV----GRSCILVSM-GGKNIMLD-----------CGMHMGYHDDRKFP 46
EI+ + G G + I + GG N+ +D + H ++
Sbjct: 27 EIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMA 86
Query: 47 DFKFIAPQGPVTDM---------IDCLIISHFHLDHCG 75
K + P T ID ++ +H H DH
Sbjct: 87 GVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHID 124
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 34.0 bits (78), Expect = 0.088
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 16/92 (17%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+ I +H+H D G L Y Y T +A +
Sbjct: 75 VTTFIPNHWHGDCIGGLGYLQRK---GVQSYANQMTIDLAKEKGLPVPEHGFTDS----- 126
Query: 121 FTSQMNILKIQILKYVMIKGTSKVWGHSSDDL 152
T ++ + +Q GH++D++
Sbjct: 127 LTVSLDGMPLQCYYL--------GGGHATDNI 150
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 34.0 bits (77), Expect = 0.11
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 501 RYYSSL-GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
RY++ L + D+VI G G G + A ++ DL I ++E+G
Sbjct: 69 RYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLR--PDLRITIVEAGVA 115
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 34.1 bits (77), Expect = 0.13
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 499 NARYYSSLGGKQYDVVISGGGMIGTTLACAIAQN 532
+ R G+ YDV+I G G+ L+ ++
Sbjct: 9 SGRENLYFQGEHYDVIILGTGLKECILSGLLSHY 42
>2p97_A Hypothetical protein; putative metal-dependent hydrolase,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP:
d.157.1.12
Length = 201
Score = 32.9 bits (75), Expect = 0.17
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 13/73 (17%)
Query: 13 QDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLD 72
+++ + NI++D + D+K + G V I + D
Sbjct: 20 RNIDFNGFAWIRPEGNILIDPV---ALSNH----DWKHLESLGGVV------WIVLTNSD 66
Query: 73 HCGALPYFTEMFG 85
H + +
Sbjct: 67 HVRSAKEIADQTY 79
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus} PDB: 2zzi_A
Length = 207
Score = 32.5 bits (75), Expect = 0.23
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHP 95
++++H H DH GA+ E P+Y+ HP
Sbjct: 47 PLAILLTHAHFDHVGAVAPLVEALDL--PVYL-HP 78
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta
lactamase, mitochondria; 2.60A {Homo sapiens}
Length = 289
Score = 32.9 bits (75), Expect = 0.27
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHP 95
I ++++H+H DH G + +
Sbjct: 71 IQEIVVTHWHRDHSGGIGDICKSIN--NDTTYCIK 103
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 33.0 bits (76), Expect = 0.28
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 509 KQYDVVISGGGMIGTTLACAIA 530
+ Y+ V+ GGG+IG AIA
Sbjct: 16 RHYEAVVIGGGIIG----SAIA 33
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
enterica}
Length = 210
Score = 32.2 bits (74), Expect = 0.30
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTH 94
+ ++++H HLDH GA + +G P+
Sbjct: 49 LMQILLTHGHLDHVGAASELAQHYGV--PVIGPE 80
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 32.1 bits (73), Expect = 0.35
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 17/97 (17%)
Query: 57 VTDM-IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKK 115
+ I +H H D G L YF ++ Y T T +I + + + +
Sbjct: 60 KHGKKVIMNIATHSHDDRAGGLEYFGKI---GAKTYSTKMTDSILAKENKPRAQYTFDNN 116
Query: 116 GDSNFFTSQMNILKIQILKYVMIKGTSKVWGHSSDDL 152
+ ++ + Q+ GH++D++
Sbjct: 117 -----KSFKVGKSEFQVYYP--------GKGHTADNV 140
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 32.5 bits (74), Expect = 0.44
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIE 544
+ D++I GGG G A A L L + ++E
Sbjct: 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic,
hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella
pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A*
3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A
3zr9_A 3s0z_A 3pg4_A
Length = 270
Score = 31.9 bits (72), Expect = 0.47
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIA 100
+ +++H H D G + Y + +A
Sbjct: 113 VALAVVTHAHQDKMGGMDALHAA---GIATYANALSNQLA 149
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc
hydrolase, metal binding protein; 1.90A {Pseudomonas
aeruginosa}
Length = 246
Score = 31.7 bits (72), Expect = 0.49
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTS 123
I +HFHLD G + +M + + TK + + R + E + +
Sbjct: 72 AINTHFHLDGTGGNEIYKKM---GAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRR 128
Query: 124 QMNILKIQILKYVMIKGTSKVW-------------GHSSDDL 152
++ + +K HS D++
Sbjct: 129 ILSSHPVPADNVFDLKQGKVFSFSNELVEVSFPGPAHSPDNV 170
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 32.0 bits (72), Expect = 0.52
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 501 RYYSSL-GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
RY + + + DVV+ G G G + A I++NP ++ + +IE
Sbjct: 29 RYMTDMITYAETDVVVVGAGSAGLSAAYEISKNP---NVQVAIIEQSVS 74
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding;
HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A
3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A
Length = 227
Score = 31.6 bits (72), Expect = 0.53
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 57 VTDM-IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIA 100
V+ + +I +++H D G Y+ + + T T+ +
Sbjct: 56 VSRKPVLEVINTNYHTDRAGGNAYWKSI---GAKVVSTRQTRDLM 97
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 31.8 bits (73), Expect = 0.54
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQ 531
+ D ++ G G+ G + ++
Sbjct: 8 IEADYLVIGAGIAGASTGYWLSA 30
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 31.9 bits (73), Expect = 0.57
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+YD++I G G +G + L++LM ++
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATR----AGLNVLMTDAHM 35
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding
proteins, murein tripeptide, periplasmi protein; HET:
MHI; 2.07A {Escherichia coli}
Length = 519
Score = 31.8 bits (73), Expect = 0.59
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 233 VRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWAT 292
VR A++ + D++ + V + P AW FTP T P F +
Sbjct: 291 VRLALS-----MTIDRRLMTEKVLGTGEKP---AW-HFTPDVTAGFTPEPSPFEQMSQEE 341
Query: 293 TPENAKALLQ 302
AK LL
Sbjct: 342 LNAQAKTLLS 351
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 32.0 bits (72), Expect = 0.61
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 504 SSLGGKQYDVVISGGGMIGTTLACAIA-QNPTLKDLSILMIESGPEKSLH 552
++ +D++ G G LA A+ + L +L ++ + H
Sbjct: 24 ATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH 73
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
succinic acid inhibitor, I metallo-beta-lactamase,
hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa}
SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A
1wuo_A 1jje_A* 1ddk_A
Length = 228
Score = 31.3 bits (71), Expect = 0.71
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAP 101
I SHFH D G + + + P Y + T +
Sbjct: 73 SISSHFHSDSTGGIEWLNSR---SIPTYASELTNELLK 107
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
3kns_A 3knr_A 2bfz_A ...
Length = 227
Score = 31.3 bits (71), Expect = 0.74
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 57 VTDM-IDCLIISHFHLDHCGALPYFTE 82
+ +II+H H D G + E
Sbjct: 74 KFQKRVTDVIITHAHADRIGGIKTLKE 100
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily
TM0207; metallo-hydrolase/oxidoreductase fold,
structural genomics; 2.00A {Thermotoga maritima} SCOP:
d.157.1.4
Length = 220
Score = 31.1 bits (71), Expect = 0.79
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 14/59 (23%)
Query: 18 SCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGA 76
+C + M GK I+ D F D + SH H DH
Sbjct: 21 ACFALEMEGKTIVTD--------------PFDESVGYPIPNVTADVVTESHQHFDHNAH 65
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 31.4 bits (72), Expect = 0.79
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546
K YD +I GGG G A +A+N + + + ++E G
Sbjct: 20 KSYDAIIVGGGGHGLATAYFLAKNHGITN--VAVLEKG 55
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 30.9 bits (70), Expect = 0.90
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 64 LIISHFHLDHCGALPYFTE 82
+ +H H D G L +F
Sbjct: 72 VFATHSHDDRAGDLSFFNN 90
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 31.2 bits (71), Expect = 1.0
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+ I GGG +G+ LACA+ + ++ +
Sbjct: 183 ITIIGGGFLGSELACALGRKARALGTEVIQLFPEK 217
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 31.0 bits (71), Expect = 1.0
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 509 KQYDVVISGGGMIGTTLACAIA 530
++ ++V+ GGG++G IA
Sbjct: 4 EKSEIVVIGGGIVG----VTIA 21
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic
recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A
2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Length = 265
Score = 30.9 bits (70), Expect = 1.0
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 57 VTDM-IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHP 95
+ + I +HFH D G + AG T P
Sbjct: 101 QIGLPVTRSISTHFHDDRVGGVDVLRA----AGVATYTSP 136
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A
{Serratia fonticola} PDB: 3sd9_A
Length = 233
Score = 30.5 bits (69), Expect = 1.1
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 57 VTDM-IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIA 100
V+ + I+ +I +++H D G Y+ + I T T +
Sbjct: 59 VSPLPINEVINTNYHTDRAGGNAYWKTL---GAKIVATQMTYDLQ 100
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 30.9 bits (70), Expect = 1.3
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+ YDVV+ GGG +G A +A+ + +L++E
Sbjct: 3 ESYDVVVVGGGPVGLATAWQVAE----RGHRVLVLERHT 37
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 30.5 bits (69), Expect = 1.5
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 509 KQYDVVISGGGMIGTTLACAIA 530
+ + V I G G G + AI
Sbjct: 3 QHHKVAIIGAGAAG--IGMAIT 22
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase
fold; 2.70A {Pseudomonas SP}
Length = 668
Score = 30.4 bits (67), Expect = 1.8
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 19 CILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALP 78
++ +++D F+ + P+ ++ SH H+DH G
Sbjct: 135 MTIIEGDSGLVLIDTLTTAETARAALDLYFQHRPKK-PIV----AVVYSHSHIDHFGGAR 189
Query: 79 YFTEMF 84
+
Sbjct: 190 GIIDEA 195
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.9
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 13/30 (43%)
Query: 286 SSL-VWATTPENAKALLQMPGESFVDALNS 314
+SL ++A ++A AL A+ +
Sbjct: 27 ASLKLYA--DDSAPAL----------AIKA 44
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 30.2 bits (68), Expect = 2.1
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
K ++I G G GT+ A +A+ + + +++ P
Sbjct: 5 KSSSLLIVGAGTWGTSTALHLARRG-YTN--VTVLDPYP 40
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 29.9 bits (68), Expect = 2.5
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 503 YSSLGGKQYD---VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFS 554
S L + ++I GGG IG +LA + Q ++K +IE +++ S
Sbjct: 225 MSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVK-----LIERNLQRAEKLS 274
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 29.9 bits (68), Expect = 2.7
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 504 SSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550
+ G+ D +I+GGG+ G T A + +NP ++S+L+IESG +S
Sbjct: 13 KDVSGRTVDYIIAGGGLTGLTTAARLTENP---NISVLVIESGSYES 56
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 30.0 bits (67), Expect = 2.7
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 510 QYDVVISGGGMIGTTLACAIAQN--PTLKDLSILMIESG 546
D+++ GGGM A + + IL+++
Sbjct: 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA 60
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 29.1 bits (66), Expect = 2.9
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549
V+I GG LA ++ +++I E
Sbjct: 3 VIIIGGETTAYYLARSMLSR----KYGVVIINKDREL 35
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein;
choline-binding protein, PCE, phosphorylcholine estera
hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae}
SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Length = 547
Score = 29.7 bits (66), Expect = 2.9
Identities = 31/219 (14%), Positives = 63/219 (28%), Gaps = 42/219 (19%)
Query: 16 GRSCILVSMGGKNIMLDCGMHMGYHD--DRKFPDFKFIAPQ--GPVTDM----------- 60
G I++ G M+D G + D D ++P + I +TD
Sbjct: 17 GSDAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQ 76
Query: 61 -IDCLIISHFHLDHCGALPYFTEMFG--------------------YAGPIYMTHPTKAI 99
+D ++++H H DH G + + + +
Sbjct: 77 KLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTA 136
Query: 100 APILLEDFRKISVEKKGDSNFFTSQMNILKIQILKYVMIKGTSKVWGHSSDDLLEFNKAH 159
+ + I+ D++F M+I + ++ D+
Sbjct: 137 TETGVSVIQNITQG---DAHFQFGDMDIQLYNYENET--DSSGELKKIWDDNSNSLISVV 191
Query: 160 NYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHY 198
+ Y+ + + K L I V K H+
Sbjct: 192 KVNGKKIYLGGDLDNVHGAEDKYGPL-IGKVDLMKFNHH 229
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 29.7 bits (67), Expect = 3.0
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+ V++ G G G + A + ++++++ P
Sbjct: 120 ETTQVLVVGAGSAGFNASLAAKKA----GANVILVDKAP 154
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 29.6 bits (67), Expect = 3.1
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 510 QYDVVISGGGMIGTTLACAIA 530
+DV++ G G +G A
Sbjct: 3 HFDVIVVGAGSMG----MAAG 19
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 29.4 bits (67), Expect = 3.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549
+I G +G+ A +A+ P +KDL ++ E K
Sbjct: 4 TIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINK 40
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 29.5 bits (65), Expect = 3.3
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQN 532
++YDV++ G G+ L+ ++ N
Sbjct: 5 EEYDVIVLGTGLTECILSGIMSVN 28
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide
transport/peptide), peptide transport; 1.20A {Salmonella
typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A
1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A
1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A
1b7h_A ...
Length = 517
Score = 29.5 bits (67), Expect = 3.8
Identities = 50/251 (19%), Positives = 78/251 (31%), Gaps = 80/251 (31%)
Query: 78 PYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQMNIL----KIQIL 133
PYF ++ + HP+ ++P+ K +VEK GD +T NI+
Sbjct: 153 PYFYKL--------LVHPS--VSPV-----PKSAVEKFGDK--WTQPANIVTNGA----- 190
Query: 134 KYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLNIDIV--- 190
Y + W + +LE N Y D +N + +
Sbjct: 191 -YKLKN-----WVVNERIVLERNP--QYWDN-----------AKT--VINQVTYLPISSE 229
Query: 191 ------YQKKVAHYELPEQPLNNV-KIKFESGESIECKLLLGT------------DGARS 231
Y+ P+ K+K E + L T + R
Sbjct: 230 VTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPNEVRVDPYLCTYYYEINNQKAPFNDVR- 288
Query: 232 QVRNAMNVQYSNWSYDQKGIVATVKISTSPPNRTAWQRFTPSGTVALLPLSDEFSSLVWA 291
VR A+ + D+ IV VK P A+ +TP T + E+
Sbjct: 289 -VRTALK-----LALDRDIIVNKVKNQGDLP---AY-SYTPPYTDGAKLVEPEWFKWSQQ 338
Query: 292 TTPENAKALLQ 302
E AK LL
Sbjct: 339 KRNEEAKKLLA 349
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 29.1 bits (64), Expect = 5.1
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 14/59 (23%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSIN 567
YDV++ G G+ L+ ++ G +K LH K Y +S+
Sbjct: 10 TDYDVIVLGTGITECILSGLLS-------------VDG-KKVLHIDKQDHYGGEAASVT 54
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 28.8 bits (65), Expect = 5.3
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 514 VISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSL 551
++ G IG LA + NP + L + + + P +
Sbjct: 13 ILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTA 50
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
{Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
2cfz_A* 2cg2_A 2cg3_A*
Length = 658
Score = 28.8 bits (63), Expect = 5.4
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 5/71 (7%)
Query: 19 CILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALP 78
+ I++D + P+ +I SH H DH G +
Sbjct: 125 ITFIRGDSGWIVVDTLTTPATARAAYE-LVSRELGERPIR----TVIYSHAHADHFGGVR 179
Query: 79 YFTEMFGYAGP 89
E A
Sbjct: 180 GLVEPQQVASG 190
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 28.6 bits (63), Expect = 6.8
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
K +D +I G G G+ LA +A +L+++ P
Sbjct: 28 KGFDYLIVGAGFAGSVLAERLAS----SGQRVLIVDRRPH 63
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 28.7 bits (64), Expect = 6.8
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Query: 435 RQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIKSILCDIFMRTSMEKVT 494
R++E L + + L PV ++G + + +P+ S D +++ + +
Sbjct: 255 REQEALANLPADLAGLPTDTLFLQPVNMVGVSALSRLLSTQPVASPSSDEYLQQRPDIPS 314
Query: 495 LLVWNARYYSSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFS 554
L + +++ GG+ TT+A AIA + + S P L +
Sbjct: 315 LSALVDDIARN--EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMT 372
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 28.6 bits (63), Expect = 6.8
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
++D+ + G G G T+A +A D +L++E P
Sbjct: 6 ARFDLFVVGSGFFGLTIAERVATQ---LDKRVLVLERRPH 42
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 28.3 bits (64), Expect = 7.1
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 514 VISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSL 551
V+ G IG L+ + +P + L++ I P +
Sbjct: 5 VLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA 42
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Length = 236
Score = 28.0 bits (63), Expect = 7.5
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 20/84 (23%)
Query: 467 GFQLVNAVRPIKSILCDIFMRTSMEKVTLLVWNARYYSSLGG------------KQYDVV 514
F V+ D+ RTS ++ + S G K+ DVV
Sbjct: 30 DFTDVDFFLMN-----DLLGRTSDSWTVRILGTKPEHHSQLGMTVKTDGHVSEVKEQDVV 84
Query: 515 ISGGGMIGTTLACAIAQNPTLKDL 538
+ G G A Q+
Sbjct: 85 LITSGYRGIP---AALQDENFMSA 105
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 28.3 bits (64), Expect = 7.8
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 504 SSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
S + GK YD +I+GGG+ G T+A + +NP + +L+IE G
Sbjct: 18 SKVAGKTYDYIIAGGGLTGLTVAAKLTENP---KIKVLVIEKGF 58
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI,
protein structure initiative, NEW research center for
structural genomics; 2.25A {Escherichia coli} SCOP:
c.1.10.7
Length = 420
Score = 28.1 bits (62), Expect = 8.2
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 131 QILKYVMIKGTSKVWG---HSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTLN 186
+++ VM+ + W + + + ++ DRI Y + I ++V + L
Sbjct: 313 AVIEEVMLD-EPQYWKKYYRTGFNDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLQ 370
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,853,864
Number of extensions: 530093
Number of successful extensions: 1443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1399
Number of HSP's successfully gapped: 173
Length of query: 595
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 496
Effective length of database: 3,937,614
Effective search space: 1953056544
Effective search space used: 1953056544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)