RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9964
(595 letters)
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 132 bits (333), Expect = 4e-34
Identities = 54/109 (49%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 3 EIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMID 62
++ + PLGAGQ+VGRSCI++ G+ IMLDCG+H G P I P ID
Sbjct: 3 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEID 57
Query: 63 CLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS 111
L+ISHFHLDHCGALP+F + + G +MTH TKAI LL D+ K+S
Sbjct: 58 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 106
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 122 bits (305), Expect = 2e-30
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDC 63
+++ P GA ++V S L+ GG+ ++LDCGM G + R F F + +D
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDA 54
Query: 64 LIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKI 110
++++H HLDH G LP GY GP+Y T T + I+LED K+
Sbjct: 55 VLLTHAHLDHVGRLPKLFRE-GYRGPVYATRATVLLMEIVLEDALKV 100
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 111 bits (277), Expect = 2e-26
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 18 SCILVSMGGKNIMLDCGMHMGYHDDRKFPDF-KFIAPQGPVTDMIDCLIISHFHLDHCGA 76
+V +++D G + + + + + P+ ID +I+S ++ GA
Sbjct: 16 VGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPE------IDVIILSQPTIECLGA 69
Query: 77 LPY----FTEMFGYAGPIYMTHPTKAIAPILLEDFRKIS-VEKKGDSNFFTSQ 124
FT F +Y T P + + D + V D+N +
Sbjct: 70 HSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLE 122
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 64.3 bits (155), Expect = 7e-12
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 5 KVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM---- 60
K+ + + G I++ G M+D G + D + +
Sbjct: 3 KIHFINVQE-GGSDAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDR 61
Query: 61 ------------IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFR 108
+D ++++H H DH G + + +Y+ + + +
Sbjct: 62 VFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYP-VDRVYLKKYSDSRITNSERLWD 120
Query: 109 KISVEKK 115
+ K
Sbjct: 121 NLYGYDK 127
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living
yeast (Trichosporon cutaneum) [TaxId: 5554]}
Length = 360
Score = 53.2 bits (126), Expect = 4e-08
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 510 QYDVVISGGGMIGTTLACAIAQ-NPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINS 568
DV+I G G G A +++ DL + +I+ K + + +
Sbjct: 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG--------QADGLQC 58
Query: 569 SSKQLFETIGAWDHIES 585
+ + + +G D I S
Sbjct: 59 RTLESLKNLGLADKILS 75
Score = 50.9 bits (120), Expect = 2e-07
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 4/104 (3%)
Query: 375 YIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESI 434
+ GD+ H P AGQG+N D L ++ + L YE
Sbjct: 246 SKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGR---AKRDILKTYEEE 302
Query: 435 RQRENLPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNAVRPIK 478
RQ ++ R++ S + +G +
Sbjct: 303 RQPFAQALIDFDHQFSRLF-SGRPAKDVADEMGVSMDVFKEAFV 345
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016)
{Bacillus anthracis [TaxId: 1392]}
Length = 244
Score = 52.1 bits (123), Expect = 5e-08
Identities = 23/149 (15%), Positives = 39/149 (26%), Gaps = 17/149 (11%)
Query: 5 KVTPLGAG-----QDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTD 59
K+T +G S L G +++DCG +
Sbjct: 2 KMTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCG-----------SGVLAQLQKYITPS 50
Query: 60 MIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAI-APILLEDFRKISVEKKGDS 118
ID +++SH+H DH + P I E+ +
Sbjct: 51 DIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFHSLTHEPHTK 110
Query: 119 NFFTSQMNILKIQILKYVMIKGTSKVWGH 147
+ L+I +K V
Sbjct: 111 GIPYNPEETLQIGPFSISFLKTVHPVTCF 139
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 49.6 bits (117), Expect = 4e-07
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 19 CILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALP 78
LV+ G K +++D G + + G + +D + I+H H DH G L
Sbjct: 64 GYLVNTGSKLVLVDTGAAGLFGPTLGRLA-ANLKAAGYQPEQVDEIYITHMHPDHVGGLM 122
Query: 79 YFTEMFGYAGPIYMTHP 95
++ +
Sbjct: 123 VGEQLAFPNAVVRADQK 139
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 46.3 bits (108), Expect = 4e-06
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 16/105 (15%)
Query: 6 VTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLI 65
+ +G + + + I S + I+ D G + K +
Sbjct: 1 MNIIGFSKALFSTWIYYS--PERILFDAGEGVSTTLGSKVYA-------------FKYVF 45
Query: 66 ISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKI 110
++H H+DH L + G P P +
Sbjct: 46 LTHGHVDHIAGLWGVVNIRNN-GMGDREKPLDVFYPEGNRAVEEY 89
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 42.8 bits (99), Expect = 4e-05
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 14/116 (12%)
Query: 4 IKVTPLGAG---------QDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQ 54
+++ L G + + + + I++D G + + +
Sbjct: 1 MELKILVTGGNVFVPGRLNAHFSTVVYLEHKDRRIIIDPGNLSSMDELEEK-----FSEL 55
Query: 55 GPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKI 110
G D I ++ +H HLDH F Y +Y T + I+ + K+
Sbjct: 56 GISPDDITDVLFTHVHLDHIFNSVLFENATFYVHEVYKTKNYLSFGTIVGRIYSKV 111
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
{Enterococcus faecalis [TaxId: 1351]}
Length = 183
Score = 42.3 bits (98), Expect = 4e-05
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 7/116 (6%)
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+ +SH HLDH + Y A P+Y TK I L + + NF
Sbjct: 30 HTAVFLSHAHLDHSRMINYLD----PAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNF 85
Query: 121 FTSQMNILKIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIID 176
++ + + + S D + DL +
Sbjct: 86 T---REMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLH 138
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 43.0 bits (100), Expect = 6e-05
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 504 SSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550
S + GK YD +I+GGG+ G T+A + +NP + +L+IE G +S
Sbjct: 18 SKVAGKTYDYIIAGGGLTGLTVAAKLTENP---KIKVLVIEKGFYES 61
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase,
PHBH {Pseudomonas aeruginosa [TaxId: 287]}
Length = 292
Score = 42.2 bits (98), Expect = 9e-05
Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 10/76 (13%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSS 569
+ V I G G G L + + + +++E R +
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHK----AGIDNVILERQTP------DYVLGRIRAGVLEQG 51
Query: 570 SKQLFETIGAWDHIES 585
L G +
Sbjct: 52 MVDLLREAGVDRRMAR 67
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 42.6 bits (99), Expect = 1e-04
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 504 SSLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS 550
+ G+ D +I+GGG+ G T A + +NP ++S+L+IESG +S
Sbjct: 11 KDVSGRTVDYIIAGGGLTGLTTAARLTENP---NISVLVIESGSYES 54
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
maltophilia [TaxId: 40324]}
Length = 266
Score = 41.5 bits (96), Expect = 1e-04
Identities = 17/140 (12%), Positives = 39/140 (27%), Gaps = 14/140 (10%)
Query: 16 GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCG 75
+ +LV ++LD GM + +G + +++SH H DH G
Sbjct: 36 DLTALLVQTPDGAVLLDGGMPQMASHLL-----DNMKARGVTPRDLRLILLSHAHADHAG 90
Query: 76 ALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQILKY 135
+ G + + + L + + + + + +
Sbjct: 91 PVAELKRRTGA--KVAANAESAVL----LARGGSDDLHFGDGITYPPANADRIVMDGEVI 144
Query: 136 VMIKGTSKVW---GHSSDDL 152
+ GH+
Sbjct: 145 TVGGIVFTAHFMAGHTPGST 164
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 380
Score = 40.6 bits (94), Expect = 4e-04
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 510 QYDVVISGGGMIGTTLACAIAQ--NPTLKDLSILMIESGPE 548
+ DVVI G G G + A + Q KDL + ++E
Sbjct: 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72
Score = 29.4 bits (65), Expect = 1.3
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 368 GFGHSVRYIGPGCALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNG 419
GF + PG L+G S ++ +G + + +++
Sbjct: 235 GFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSE 286
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 288
Score = 40.1 bits (92), Expect = 5e-04
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSK 571
D++I+G G+ G + A A+ Q + ++ES E +I ++
Sbjct: 3 DILIAGAGIGGLSCALALHQAG---IGKVTLLESSSEIRPL--------GVGINIQPAAV 51
Query: 572 QLFETIGAWDHIESTRTCTVDNM 594
+ +G + +T T +
Sbjct: 52 EALAELGLGPALAATAIPTHELR 74
Score = 38.9 bits (89), Expect = 0.001
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 380 CALLGDSAHRIHPLAGQGVNLGFGDIACLVQLSAESVSNGYPIGHPESLTKYESIRQREN 439
LLGD+AH ++P+ G + D L A + +L +YE R+
Sbjct: 191 ITLLGDAAHLMYPMGANGASQAILDGIELAAALARNAD------VAAALREYEEARRPTA 244
Query: 440 LPVMLSIDLMYRVYRSSLTPVKILGNLGFQLVNA 473
++L+ + ++ + K + + +
Sbjct: 245 NKIILANREREKEEWAAASRPKTEKSAALEAITG 278
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 39.9 bits (92), Expect = 5e-04
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 19 CILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALP 78
LV + G N+++D +F + I +I++H DH G+LP
Sbjct: 42 AYLVKLNGANVLIDGW------KGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLP 95
Query: 79 YFTEMFGYAGPIYMTHPTKA 98
+ G+ I ++ K
Sbjct: 96 ATLKTIGHDVEIIASNFGKR 115
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 40.0 bits (92), Expect = 6e-04
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
+YDVVI G G IG T A + + M + G
Sbjct: 3 IKYDVVIVGSGPIGCTYARELVGAG----YKVAMFDIGEI 38
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 39.5 bits (91), Expect = 0.001
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 508 GKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
G + ++ G G G A + Q + ++E G
Sbjct: 5 GDRVPALVIGSGYGGAVAALRLTQ----AGIPTQIVEMGRS 41
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 12/139 (8%)
Query: 16 GRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCG 75
G + ++ I++D M + IA G I ++ +H HLDH G
Sbjct: 26 GIAVYVIKTSQGLILMDTAMPQSTGMIKDN-----IAKLGFKVADIKLILNTHAHLDHTG 80
Query: 76 ALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQILKY 135
+ G + P+L + + + + +K
Sbjct: 81 GFAEIKKETG-----AQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVT 135
Query: 136 VMIKGTSKVW--GHSSDDL 152
+ + GHS
Sbjct: 136 LGDTTLTAHATPGHSPGCT 154
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 38.4 bits (88), Expect = 0.002
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSS 569
+ D++I GGG G A A L L + ++E +S + + +S+IN+
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA-----VERSGAVAQGLSAINTY 75
Query: 570 SKQLFETIGAWDHIESTRTCTV 591
L + +E
Sbjct: 76 I-DLTGRSERQNTLEDYVRYVT 96
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB
{Pseudomonas putida [TaxId: 303]}
Length = 304
Score = 37.8 bits (86), Expect = 0.002
Identities = 14/122 (11%), Positives = 31/122 (25%), Gaps = 32/122 (26%)
Query: 4 IKVTPLGAGQDVG-------------------------RSCILVSMGGKN-IMLDCGMHM 37
+ + LG+ G +S I +S G + I+ + +
Sbjct: 1 MYIQVLGSAAGGGFPQWNCNCVNCKGYRDGTLKATARTQSSIALSDDGVHWILCNASPDI 60
Query: 38 GYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTE---MFGYAGPIYMTH 94
+ I+ +++ +DH L E + +
Sbjct: 61 RAQ---LQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGCPHQVWCTDMVHQD 117
Query: 95 PT 96
T
Sbjct: 118 LT 119
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 37.3 bits (85), Expect = 0.003
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
YDV++ GGG G A A+ + ++L+++ G +
Sbjct: 2 HYDVIVIGGGPSGLMAAIGAAE----EGANVLLLDKGNK 36
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus
sp. [TaxId: 1409]}
Length = 276
Score = 36.7 bits (83), Expect = 0.005
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+ Y+ V+ GGG+IG+ +A +A+ ++ + + ESG
Sbjct: 3 RHYEAVVIGGGIIGSAIAYYLAK----ENKNTALFESGT 37
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor
(AIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 36.2 bits (82), Expect = 0.005
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
++ GGG A +I +L++ PE
Sbjct: 3 SHVPFLLIGGGTAAFAAARSIRARD--PGARVLIVSEDPE 40
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 298
Score = 36.9 bits (84), Expect = 0.005
Identities = 18/156 (11%), Positives = 35/156 (22%), Gaps = 7/156 (4%)
Query: 20 ILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPY 79
+L +++ G+ P + +I+H H DHCG LPY
Sbjct: 26 LLRLGEASWALVEGGISRDAELVWADLCRWVADPS-----QVHYWLITHKHYDHCGLLPY 80
Query: 80 FTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQILKYVMIK 139
+ A R + + L +
Sbjct: 81 LCPRLPNV--QVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVA 138
Query: 140 GTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLII 175
+ L + D + + +
Sbjct: 139 DGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRL 174
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 36.3 bits (82), Expect = 0.008
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
YDV++ G G+ L+ ++ +L I+
Sbjct: 4 TDYDVIVLGTGITECILSGLLSV----DGKKVLHIDKQD 38
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 36.5 bits (83), Expect = 0.008
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
V+ G G A + + + LM+E G
Sbjct: 3 VPAVVIGTGYGAAVSALRLGE----AGVQTLMLEMGQL 36
>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale
cress(Arabidopsis thaliana) [TaxId: 3702]}
Length = 278
Score = 35.6 bits (81), Expect = 0.011
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 498 WNARYYSSL-GGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
RY + + + DVV+ G G G + A I++NP ++ + +IE
Sbjct: 20 MTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNP---NVQVAIIEQSVS 68
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 36.0 bits (81), Expect = 0.011
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
++YDV++ G G+ L+ ++ +L ++ P
Sbjct: 5 EEYDVIVLGTGLTECILSGIMSV----NGKKVLHMDRNPY 40
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
subtilis [TaxId: 1423]}
Length = 307
Score = 35.8 bits (81), Expect = 0.012
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 32/101 (31%)
Query: 4 IKVTPLGAG-----QDVGRSCILVSM---GGKNIMLDCG-------MHMGYHDDRKFPDF 48
+++ LG G + + + + + + DCG +H +
Sbjct: 1 MELLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTTIKPRK----- 55
Query: 49 KFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGP 89
I+ + I+H H DH LP + G
Sbjct: 56 ------------IEKIFITHMHGDHVYGLPGLLGSRSFQGG 84
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 34.2 bits (78), Expect = 0.013
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP--EKSLHFSKSSSYSNRVSSIN 567
V I G G +G + A +A T +L ++ + +++ + + ++S
Sbjct: 4 VAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA 60
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 265
Score = 35.1 bits (79), Expect = 0.017
Identities = 10/83 (12%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSK 571
+ + GG + G T A + + + + E P+ F +
Sbjct: 6 RIAVVGGSISGLTAALMLRD----AGVDVDVYERSPQPLSGFG-------TGIVVQPELV 54
Query: 572 QLFETIGAWDHIESTRTCTVDNM 594
G S + +++ +
Sbjct: 55 HYLLEQGVELDSISVPSSSMEYV 77
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia
coli [TaxId: 562]}
Length = 305
Score = 35.1 bits (79), Expect = 0.018
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 33/108 (30%)
Query: 4 IKVTPLGAG-----QDVGRSCILVSM----GGKNIMLDCG-------MHMGYHDDRKFPD 47
+ + LG + + IL+++ + DCG +H ++ +
Sbjct: 1 MNLIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGK---- 56
Query: 48 FKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHP 95
+D + ISH H DH LP +G I
Sbjct: 57 -------------LDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTI 91
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 35.0 bits (79), Expect = 0.020
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
DVV+ G G G + A + + +++IE P
Sbjct: 16 TVDVVVVGSGGAGFSAAISATDS----GAKVILIEKEPV 50
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 34.6 bits (78), Expect = 0.028
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
YD +I G G G A +++ +L++E G
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAG----KKVLLLERGGP 36
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 34.4 bits (78), Expect = 0.041
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 9/87 (10%)
Query: 16 GRSCILVSMGGK-NIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHC 74
+ I G I++D + + + P+ +I SH H DH
Sbjct: 102 DLANITFIRGDSGWIVVDTLTTPATARAAYELVSRELGER-PIRT----VIYSHAHADHF 156
Query: 75 GALPYFTE---MFGYAGPIYMTHPTKA 98
G + E + A I
Sbjct: 157 GGVRGLVEPQQVASGAVQIIAPAGFME 183
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 33.7 bits (76), Expect = 0.042
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
K +DVVI GGG G A AQ + +E +
Sbjct: 4 KSHDVVIIGGGPAGYVAAIKAAQ----LGFNTACVEKRGK 39
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 33.4 bits (75), Expect = 0.047
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
K YD + GGG G A +IE+
Sbjct: 1 KHYDYIAIGGGSGGIASINRAAM----YGQKCALIEAKE 35
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 33.9 bits (76), Expect = 0.048
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+DV++ G G +G +A+ + + L++++
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAK----QGVKTLLVDAFD 36
>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia
coli [TaxId: 562]}
Length = 311
Score = 33.8 bits (76), Expect = 0.051
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSS 569
Q D+ I G G G A A AQ + I +I H + S V+ + S
Sbjct: 5 QADLAIVGAGGAGLRAAIAAAQAN--PNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDS 62
Query: 570 SKQLFE-TIGAWDHIESTRTCT 590
+ F T+ D +
Sbjct: 63 FEYHFHDTVAGGDWLCEQDVVD 84
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 33.7 bits (76), Expect = 0.061
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
YD VI GGG G LA +++ +L++E G
Sbjct: 27 YDYVIVGGGTSGCPLAATLSEKY-----KVLVLERGS 58
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 33.3 bits (75), Expect = 0.067
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
+ + +I G G G A +A+ S+ + ++G +
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAKL----GKSVTVFDNGKK 38
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO),
N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Length = 249
Score = 33.0 bits (74), Expect = 0.068
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 6/93 (6%)
Query: 25 GGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMF 84
K + D + ID L+I H LDH GALP E
Sbjct: 41 DEKTTLFDTV------KAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEAC 94
Query: 85 GYAGPIYMTHPTKAIAPILLEDFRKISVEKKGD 117
+ KA+ + V K G+
Sbjct: 95 QPEKIFTSSLGQKAMESHFHYKDWPVQVVKHGE 127
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 33.2 bits (74), Expect = 0.073
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH 552
+ D ++ GGG+ G A A Q K LS +++ P K H
Sbjct: 4 QYCDSLVIGGGLAGLRAAVATQQ----KGLSTIVLSLIPVKRSH 43
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 32.5 bits (72), Expect = 0.080
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSL 551
V++ G G + D I E G S
Sbjct: 3 VIVLGSSHGGYEAVEELLNL--HPDAEIQWYEKGDFISF 39
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 32.9 bits (74), Expect = 0.080
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+ + ++ G G G A AQ + ++E G
Sbjct: 2 IETETLVVGAGPGGYVAAIRAAQ----LGQKVTIVEKGN 36
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 144
Score = 31.9 bits (72), Expect = 0.080
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSS 570
V+ G IG L+ + +P + L++ I P + S + + +
Sbjct: 4 AVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 32.5 bits (72), Expect = 0.081
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
VV+ GGG G T A I + + +IE
Sbjct: 5 VVVVGGGTGGATAAKYIKLAD--PSIEVTLIEPNT 37
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 32.0 bits (72), Expect = 0.086
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKS--LHFSKSSSYSNRVSSI---- 566
VV+ G G +G + A+ ++ ++ + F+ ++ + I
Sbjct: 9 VVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD 68
Query: 567 ---NSSSKQLFETIGAWDHIESTRTCTVD 592
+ + GA TR VD
Sbjct: 69 YDDCRDADLVVICAGANQKPGETRLDLVD 97
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 33.0 bits (74), Expect = 0.090
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSY 559
+ DVVI G G G A + ++++E P + ++
Sbjct: 22 ETTDVVIIGSGGAGLAAAVSARDA----GAKVILLEKEPIPGGNTKLAAGG 68
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 32.5 bits (73), Expect = 0.11
Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
+ DVVI GGG G A AQ IE
Sbjct: 2 DENDVVIIGGGPGGYVAAIKAAQ----LGFKTTCIEKRGA 37
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 32.6 bits (73), Expect = 0.12
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
+ V++ G G G + A + ++++++ P
Sbjct: 18 ETTQVLVVGAGSAGFNASLAAKKA----GANVILVDKAPF 53
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 31.6 bits (71), Expect = 0.12
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSN 561
+ I G G +G +A + D + K+ + +N
Sbjct: 4 IGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMAN 52
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 31.2 bits (70), Expect = 0.16
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLHFS 554
+ G G +G+T A N + +++++ I
Sbjct: 3 LGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD 44
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 32.2 bits (72), Expect = 0.18
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 501 RYYSSLGGK-QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
RY+ L DV+I G G G + A IA+N DL + +IES
Sbjct: 40 RYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKN--RPDLKVCIIESSVA 86
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 31.7 bits (70), Expect = 0.25
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+VI G G++GT LA + + I +++ GP
Sbjct: 2 PRIVIIGAGIVGTNLADELVTRG-WNN--ITVLDQGP 35
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
{Escherichia coli [TaxId: 562]}
Length = 330
Score = 31.8 bits (71), Expect = 0.25
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH 552
+++D V+ G G G A I+Q+ + ++ H
Sbjct: 6 REFDAVVIGAGGAGMRAALQISQS----GQTCALLSKVFPTRSH 45
>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 31.4 bits (70), Expect = 0.27
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
DV+I G G G +LA +A ++++ GP
Sbjct: 6 HSCDVLIIGSGAAGLSLALRLADQ-----HQVIVLSKGP 39
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga
maritima [TaxId: 2336]}
Length = 209
Score = 30.9 bits (69), Expect = 0.28
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 14/62 (22%)
Query: 15 VGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHC 74
G +C + M GK I+ D P + + P D + SH H DH
Sbjct: 7 FGHACFALEMEGKTIVTD-------------PFDESVGYPIPNVT-ADVVTESHQHFDHN 52
Query: 75 GA 76
Sbjct: 53 AH 54
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 31.2 bits (69), Expect = 0.28
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549
+++DV++ G G G A AQ L +IE K
Sbjct: 2 QKFDVIVIGAGPGGYVAAIKSAQ----LGLKTALIEKYKGK 38
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 31.1 bits (69), Expect = 0.30
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
Q ++I GGG G A Q + +++E
Sbjct: 5 QTTLLIIGGGPGGYVAAIRAGQL----GIPTVLVEGQA 38
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 145
Score = 30.1 bits (67), Expect = 0.34
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549
+I G +G+ A +A+ P +KDL ++ E K
Sbjct: 4 TIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINK 40
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 30.6 bits (68), Expect = 0.34
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
YD ++ GGG G A A+ ++ES
Sbjct: 2 ASYDYLVIGGGSGGLASARRAAE----LGARAAVVESHK 36
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 30.0 bits (67), Expect = 0.38
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESG--PEKSLHFSKSSSYSN 561
+ + G G +G+TLA A AQ +++ + I + L SS+
Sbjct: 4 LAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYP 54
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 30.7 bits (68), Expect = 0.39
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+YDVV+ GGG G + A A A + L + ++E
Sbjct: 5 AEYDVVVLGGGPGGYSAAFAAAD----EGLKVAIVERYK 39
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 30.8 bits (68), Expect = 0.39
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
YD+++ GGG G A A+ + + ++E
Sbjct: 2 YDLIVIGGGSGGMAAARRAAR----HNAKVALVEKSR 34
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 29.6 bits (66), Expect = 0.53
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEK 549
V+ G +G IA ++ + I +
Sbjct: 4 SVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD 40
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 30.3 bits (67), Expect = 0.54
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQ 531
++YD + GGG G + +
Sbjct: 41 REYDAIFIGGGAAGRFGSAYLRA 63
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 29.6 bits (66), Expect = 0.57
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESG--PEKSLHFSKSSSYSNRVSSINSSS 570
+ I G G +G+T A +A L D+ +L I G K+L ++S + + +
Sbjct: 4 ISIIGAGFVGSTTAHWLAAKE-LGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRV-TGT 61
Query: 571 KQLFETIGAWDHIESTRTCTVDNMK 595
+T + + ++ M
Sbjct: 62 NNYADTANSDVIVVTSGAPRKPGMS 86
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 29.7 bits (65), Expect = 0.58
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 512 DVVISGGGMIGTTLACAIAQ 531
+VVI G G+ G +A +
Sbjct: 5 NVVIVGTGLAGVEVAFGLRA 24
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 29.2 bits (65), Expect = 0.70
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH 552
VV+ G G +G++ A A+AQ ++ I+ + K
Sbjct: 8 VVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDA 47
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 142
Score = 28.9 bits (64), Expect = 0.79
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSI 540
+ + G G +G T A +A+ ++L +
Sbjct: 3 ITVIGAGNVGATTAFRLAEKQLARELVL 30
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 29.3 bits (64), Expect = 0.86
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 513 VVISGGGMIGTTLACAIAQN 532
VVI G G G LA ++Q
Sbjct: 3 VVIVGNGPGGFELAKQLSQT 22
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 28.8 bits (64), Expect = 1.1
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH 552
+ + G G +G A +I +L+++ ++ +
Sbjct: 22 ITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEA 61
>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase
subunit F (AhpF), C-terminal domains {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 28.9 bits (63), Expect = 1.2
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
YDV+I G G G A A+ K + ++
Sbjct: 2 YDVLIVGSGPAGAAAAIYSAR----KGIRTGLMGERF 34
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 29.3 bits (64), Expect = 1.3
Identities = 15/180 (8%), Positives = 45/180 (25%), Gaps = 1/180 (0%)
Query: 1 MSEIKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDM 60
+ E +T + + + + P +G +
Sbjct: 39 IQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMV 98
Query: 61 IDCLIISHFHLDHCGALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNF 120
+ + + A F + + +++ DF +
Sbjct: 99 KGSIQQEELTILNIYAPNTGAPRFIKQVLSDLQRDLDSH-TLIMGDFNTPLSTLDRSTRQ 157
Query: 121 FTSQMNILKIQILKYVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTK 180
++ L + + S + F+ H+ +I +IV + ++ +
Sbjct: 158 KVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHIVGSKALLSKCKR 217
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 28.5 bits (63), Expect = 1.3
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSIL 541
+ I G G +G++ A A+ +++ ++
Sbjct: 3 IGIVGLGRVGSSTAFALLMKGFAREMVLI 31
>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus
thermophilus [TaxId: 274]}
Length = 230
Score = 28.8 bits (64), Expect = 1.4
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIE 544
Y V+I G G G A +AQ K + + ++
Sbjct: 3 YQVLIVGAGFSGAETAFWLAQ----KGVRVGLLT 32
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 29.2 bits (64), Expect = 1.4
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
Q VV+ G G+IG + A +A+ K S+ ++
Sbjct: 6 QKRVVVLGSGVIGLSSALILAR----KGYSVHILARDL 39
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 28.5 bits (62), Expect = 1.5
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 513 VVISGGGMIGTTLACAIAQ 531
VV+ G G+ + + Q
Sbjct: 6 VVVLGAGLASVSFVAELRQ 24
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 28.5 bits (63), Expect = 1.5
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMI 543
+ + G G +G A +I +L+++ +
Sbjct: 23 ITVVGVGQVGMACAISILGKSLADELALVDV 53
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii
[TaxId: 5811]}
Length = 154
Score = 28.1 bits (62), Expect = 1.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNP 533
++ V + G GMIG T+ A
Sbjct: 6 RRKKVAMIGSGMIGGTMGYLCALRE 30
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 28.1 bits (62), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESG 546
+V+ G GMIG +A I Q L D+ + I
Sbjct: 6 IVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVKN 38
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 28.6 bits (63), Expect = 2.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 511 YDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
YD +I G G+ G A + + + +L+IE
Sbjct: 2 YDYIIVGSGLFGAVCANELKK----LNKKVLVIEKRNH 35
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 28.2 bits (61), Expect = 2.5
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+D++I GGG G A A+ D +++++
Sbjct: 3 DFDLIIIGGGSGGLAAAKEAAK----FDKKVMVLDFVT 36
>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum
vulgare), chloroplast [TaxId: 4558]}
Length = 175
Score = 27.6 bits (61), Expect = 2.7
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 5/47 (10%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLK-----DLSILMIESGPEKSLHFS 554
V GMI L +A L +L E + +
Sbjct: 28 AVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA 74
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 28.1 bits (61), Expect = 2.9
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQ 531
K +D+V+ G G G A A
Sbjct: 2 KIFDLVVIGAGSGGLEAAWNAAT 24
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 249
Score = 28.0 bits (61), Expect = 3.3
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 8/129 (6%)
Query: 25 GGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHCGALPYFTEMF 84
K ++D ++ K + +D L+++H DH GA P E+
Sbjct: 43 DDKTALVDTV-----YEPFKEELIAKLKQIKDPVK-LDYLVVNHTESDHAGAFPAIMELC 96
Query: 85 GYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQILKYVMIKGTSKV 144
A + ++ ++ K G S + L + +
Sbjct: 97 PDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTS--VSLGKRSLTFIEAPMLHWPDSMFT 154
Query: 145 WGHSSDDLL 153
+ LL
Sbjct: 155 YVPEEALLL 163
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 27.0 bits (59), Expect = 3.6
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
+ I GGG +G+ LACA+ + ++ +
Sbjct: 40 ITIIGGGFLGSELACALGRKARALGTEVIQLFPEK 74
Score = 27.0 bits (59), Expect = 4.0
Identities = 6/66 (9%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 159 HNYQDRISYIVENDLIIDAVTKKLNTLNIDIVYQKKVAHYELPEQPLNNVKIKFESGESI 218
+ + + + + +K+ + ++ V + + IK + G +
Sbjct: 70 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS---GKLLIKLKDGRKV 126
Query: 219 ECKLLL 224
E ++
Sbjct: 127 ETDHIV 132
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 27.8 bits (60), Expect = 4.1
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
+V + GGG+ G +A + + +++ES
Sbjct: 2 NVAVVGGGISGLAVAHHLRS----RGTDAVLLESSAR 34
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 27.6 bits (60), Expect = 4.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQ 531
+ YD+V+ G G G A
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAAS 24
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 27.1 bits (59), Expect = 4.6
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPEKSLH 552
K ++I G G G A+ +L ++I +
Sbjct: 4 KHSKLLILGSGPAG--YTAAV--YAARANLQPVLITGMEKGGQL 43
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 27.8 bits (60), Expect = 4.6
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 512 DVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGP 547
DVV+ GGG+ G A + L+++++E+
Sbjct: 1 DVVVVGGGISGMAAAKLLHD----SGLNVVVLEARD 32
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 27.5 bits (60), Expect = 4.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 513 VVISGGGMIGTTLACAIAQN 532
VV+ G G+IG + A I +
Sbjct: 3 VVVIGAGVIGLSTALCIHER 22
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 560
Score = 27.6 bits (60), Expect = 5.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 505 SLGGKQYDVVISGGGMIGTTLACAIAQNPTLKDLSILM 542
L G+QY +++G G + T P +K+ S L+
Sbjct: 509 ELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLL 546
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 491
Score = 27.4 bits (60), Expect = 5.5
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 510 QYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIES-----GPEKSLHFSKSSSYSNRVS 564
+DV++ G G+ + +A A +++ +L ++S G S FS S+
Sbjct: 6 DFDVIVIGTGLPESIIAAACSRS----GQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQ 61
Query: 565 SINSSSK 571
N
Sbjct: 62 ENNDVVT 68
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 154
Score = 26.6 bits (58), Expect = 5.7
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 513 VVISGGGMIGTTLACAIAQNPTLK-----DLSILMIESGPEK 549
+V G I +L +I L +L I
Sbjct: 7 LVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGV 48
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 27.3 bits (59), Expect = 6.1
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 513 VVISGGGMIG-TTLACAIAQNPTLKDLSILMIESGPEKSLHFSKSSSYSNRVSSINSSSK 571
+ +G G +G T+++CA A + +L++ + P ++ S + N + +I S
Sbjct: 11 LFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPG 70
Query: 572 QLFETIGAWDHIESTRTCTVDNMK 595
I + R VD +K
Sbjct: 71 LSALEIDPQAAAQQYRARIVDPIK 94
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 27.1 bits (59), Expect = 6.3
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 509 KQYDVVISGGGMIGTTLACAIAQNPTLKDLSILMIESGPE 548
++ DV++ G G G + + S+ +IE+ +
Sbjct: 6 EEVDVLVVGAGFSGLYALYRLRE----LGRSVHVIETAGD 41
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain,
N-terminal subdomain {Human (Homo sapiens) [TaxId:
9606]}
Length = 120
Score = 25.9 bits (57), Expect = 6.9
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 201 PEQPLNNVKIKFESGESIECKLLLGTDGARSQVRNAMNVQ 240
P PL + +SI+ L L T G ++ N+Q
Sbjct: 62 PSTPLA-IHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQ 100
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, VIM-2 [TaxId: 287]}
Length = 230
Score = 26.5 bits (57), Expect = 8.1
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 12 GQDVGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHL 71
G + ++V G + +++D I Q + + + +HFH
Sbjct: 33 GAVYPSNGLIVRDGDELLLIDTAWGAKNTAAL----LAEIEKQIGL--PVTRAVSTHFHD 86
Query: 72 DHCGALPYFTE 82
D G +
Sbjct: 87 DRVGGVDVLRA 97
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 26.6 bits (57), Expect = 9.1
Identities = 21/178 (11%), Positives = 50/178 (28%), Gaps = 10/178 (5%)
Query: 15 VGRSCILVSMGGKNIMLDCGMHMGYHDDRKFPDFKFIAPQGPVTDMIDCLIISHFHLDHC 74
V + ++V + +LD ++ + ++A + I +H+H D
Sbjct: 33 VPSNGMIVINNHQAALLDTPINDAQTE----TLVNWVADSLHA--KVTTFIPNHWHGDCI 86
Query: 75 GALPYFTEMFGYAGPIYMTHPTKAIAPILLEDFRKISVEKKGDSNFFTSQMNILKIQILK 134
G L Y + + MT + + + + Q L
Sbjct: 87 GGLGYLQKKGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTV-SLDGMPLQCYYLGGGHAT 145
Query: 135 YVMIKGTSKVWGHSSDDLLEFNKAHNYQDRISYIVENDLIIDAVTKKLNTL-NIDIVY 191
++ +L+ N+A + + + + K + V
Sbjct: 146 DNIVVWLPTENILFGGCMLKDNQATSIGN--ISDADVTAWPKTLDKVKAKFPSARYVV 201
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 26.5 bits (57), Expect = 9.9
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 513 VVISGGGMIG-TTLACAIAQNPTLKDLSILMIESGPEKSLHFS 554
+++ G G +G TT+A AIA + + S P L +
Sbjct: 23 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMT 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,160,976
Number of extensions: 100101
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 115
Length of query: 595
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 505
Effective length of database: 1,171,896
Effective search space: 591807480
Effective search space used: 591807480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)