BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9966
(1101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust.
Identities = 278/435 (63%), Positives = 350/435 (80%), Gaps = 7/435 (1%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG +S+VYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGCESVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+APIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
ITWTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 ITWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +QI++VKM +EYMSFSAHADAKGIMQLI
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLI 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
+ EP+NVLLVHGEA KM FLK+KI+QEF+++C+MPANGE+ + T+ I +D+S+ LLK
Sbjct: 403 RQAEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTTIFTNPSIPVDISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E P+ K + +HG L++KD+S L+ ++A KE+G++ H +RFT V I D
Sbjct: 463 RETAI--GLLPDAKKPKLMHGTLIMKDNSFRLVSPEQALKELGLAEHQLRFTCRVHIQDP 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTESSLSIDSVLL--SVERIDDKNKRVFVTWP 418
++T+ +Y+ L L+D S ++ L + S++++S+L+ + D K + V+W
Sbjct: 521 RKEHETVLRVYNHLKGVLKDYSVQH---LPDGSITVESILIQATAHSEDQGTKVLLVSWT 577
Query: 419 NQDEEVGKIVLHVLK 433
QDEE+G + +LK
Sbjct: 578 YQDEELGSYLTSLLK 592
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 585 bits (1507), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/436 (63%), Positives = 349/436 (80%), Gaps = 8/436 (1%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
M Q+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRPD+LI+ESTYATTIRDSKRCRERDFL
Sbjct: 163 MVQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+APIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
ITWTNQKIRKTFVQRNMF+FKHI+ FD+S+ DNPGPMVVFATPGMLH+G SL IFKKWA
Sbjct: 283 ITWTNQKIRKTFVQRNMFEFKHIKAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+L+G KKLE E + +DVK+ +EYMSFSAHADAKGIMQLI
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILNGQKKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLI 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
+ EP+N+LLVHGEA KM FLK+KI+QEF++ CFMPANGE+ + T+ + +D+S+NLLK
Sbjct: 403 RMAEPRNMLLVHGEAKKMEFLKDKIEQEFSISCFMPANGETTTIVTNPSVPVDISLNLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E + P+ + R +HG L++KD+S+ L+ ++A KE+G++ H +RFT VQ+ D
Sbjct: 463 RE-MALGGPLPDAKRPRTMHGTLIMKDNSLRLVSPEQALKELGLNEHQLRFTCRVQLHDP 521
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQ-LTESSLSIDSVLLSV-ERIDDKN-KRVFVTW 417
TL IY L S L + Y IQ + + ++ ++S+++ V ++ N K + ++W
Sbjct: 522 HSDTDTLSRIYTHLKSVL----KSYSIQHVPDGTVIVESIVIKVTSSAEEPNLKVILLSW 577
Query: 418 PNQDEEVGKIVLHVLK 433
QDEE+G + +LK
Sbjct: 578 SYQDEELGSFLSTLLK 593
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 583 bits (1502), Expect = e-165, Method: Compositional matrix adjust.
Identities = 272/436 (62%), Positives = 345/436 (79%), Gaps = 7/436 (1%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+ PIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
ITWTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 ITWTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP++VLLVHGEA KM FL++KI+QEF + C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E V+ P K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 463 REMVQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLQDT 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTESSLSIDSVLL--SVERIDDKNKRVFVTWP 418
+T +Y L S L+D ++ L + S++++S+L+ + D K + V+W
Sbjct: 521 RKEQETALRVYSHLKSTLKDHCVQH---LPDGSVTVESILIQAAAHSEDPGTKVLLVSWT 577
Query: 419 NQDEEVGKIVLHVLKS 434
QDEE+G + +LK+
Sbjct: 578 YQDEELGSFLTTLLKN 593
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 271/436 (62%), Positives = 345/436 (79%), Gaps = 7/436 (1%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+ PIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
ITWTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 ITWTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP++VLLVHGEA KM FL++KI+QEF + C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E V+ P K R +HG L++KD++ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 463 REMVQ--GLLPEAKKPRLLHGTLIMKDNNFRLVSSEQALKELGLAEHQLRFTCRVHLQDT 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTESSLSIDSVLL--SVERIDDKNKRVFVTWP 418
+T +Y L S L+D ++ L + S++++S+L+ + D K + V+W
Sbjct: 521 RKEQETALRVYSHLKSTLKDHCVQH---LPDGSVTVESILIQAAAHSEDPGTKVLLVSWT 577
Query: 419 NQDEEVGKIVLHVLKS 434
QDEE+G + +LK+
Sbjct: 578 YQDEELGSFLTALLKN 593
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 580 bits (1496), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/435 (62%), Positives = 342/435 (78%), Gaps = 7/435 (1%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+ PIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I WTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 IPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP++VLLVHGEA KM FLK+KI+QE ++C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E + P K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 463 REMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDT 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTESSLSIDSVLL--SVERIDDKNKRVFVTWP 418
+T +Y L S L+D ++ L + S++++SVLL + D K + V+W
Sbjct: 521 RKEQETALRVYSHLKSVLKDHCVQH---LPDGSVTVESVLLQAAAPSEDPGTKVLLVSWT 577
Query: 419 NQDEEVGKIVLHVLK 433
QDEE+G + +LK
Sbjct: 578 YQDEELGSFLTSLLK 592
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 579 bits (1492), Expect = e-164, Method: Compositional matrix adjust.
Identities = 270/435 (62%), Positives = 343/435 (78%), Gaps = 7/435 (1%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERM+L+APIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I WTNQKIRKTFVQRNMF+FKHI+ FD++F D+PGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 IPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP+NVLLVHGEA KM FLK+KI+QEF ++C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E + P+ K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 463 REMAQ--GLLPDAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDT 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTESSLSIDSVLL--SVERIDDKNKRVFVTWP 418
+ +Y L S L+D ++ L + S++++S+L+ + D K + V+W
Sbjct: 521 RKEQEMAMRVYSHLKSVLKDHCVQH---LPDGSVTVESILVQAAAHSEDPGTKVLLVSWT 577
Query: 419 NQDEEVGKIVLHVLK 433
QDEE+G + +LK
Sbjct: 578 YQDEELGSYLTSLLK 592
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 578 bits (1490), Expect = e-164, Method: Compositional matrix adjust.
Identities = 270/435 (62%), Positives = 341/435 (78%), Gaps = 7/435 (1%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+ PIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I WTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 IPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP++VLLVHGEA KM FLK+KI+QE + C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E + P K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 463 REMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDT 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTESSLSIDSVLL--SVERIDDKNKRVFVTWP 418
+T +Y L S L+D ++ L + S++++S+L+ + D K + V+W
Sbjct: 521 RKEQETALRVYSHLKSILKDHCVQH---LPDGSVTVESILIQAAAPSEDPGTKVLLVSWT 577
Query: 419 NQDEEVGKIVLHVLK 433
QDEE+G + +LK
Sbjct: 578 YQDEELGSFLTSLLK 592
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/319 (61%), Positives = 250/319 (78%), Gaps = 12/319 (3%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF KVG++S+VYTGDYNMTPDRHLG+AWID+ +PD+LITE+TYATTIRDSKR RERDFL
Sbjct: 162 MFYAKVGDESVVYTGDYNMTPDRHLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFL 221
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNL-QAPIYFAVGLTEKATNYYKM 119
K++HECV++GGKVLIPVFALGR QELCIL+++YWE+MNL PIYF+ GL EKA YYK+
Sbjct: 222 KRIHECVEKGGKVLIPVFALGRVQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKL 281
Query: 120 FITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWA 179
FI WTNQKI++TFV+RNMFDFKHI+PF +D PG MV+FATPGMLH+G SL +FKKWA
Sbjct: 282 FINWTNQKIKQTFVKRNMFDFKHIKPFQSHLVDAPGAMVLFATPGMLHAGASLEVFKKWA 341
Query: 180 PVENNMLIMPGFCVQGTIGHKVLSG-----------VKKLEFENKQIIDVKMAIEYMSFS 228
P E NM I+PG+CV GT+G+K+L+ + +E + K I+VK I +SFS
Sbjct: 342 PNELNMTIIPGYCVVGTVGNKLLTTGSDQQQQSKPQSQMVEIDKKTTIEVKCKIHNLSFS 401
Query: 229 AHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDM 288
AHADAKGI+QLI+ P+NV+LVHGE KM FL +KI +E ++C+ PANG + + T
Sbjct: 402 AHADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYYPANGVTIIIDTMK 461
Query: 289 KISIDVSVNLLKEEAVKYN 307
I ID+S+NLLK + + Y+
Sbjct: 462 SIPIDISLNLLKRQILDYS 480
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 355 bits (910), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 174/333 (52%), Positives = 229/333 (68%), Gaps = 5/333 (1%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
M K+G+ +IVYTGDYNMT DRHLGAA ID+ + DLLI+ESTYATTIR SK RER+FL
Sbjct: 162 MVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFL 221
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
+ VH+CV GGK LIP FALGRAQELC+LL+ YWERMN++ PIYF+ GLT +A YYKM
Sbjct: 222 QAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKML 281
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I+WT+Q +++ N FDFK+++ FD+S I PGP V+FATPGML +G SL +FK WAP
Sbjct: 282 ISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAP 341
Query: 181 VENNMLIMPGFCVQGTIGHKVLSG-VKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQL 239
N++ +PG+ V GT+GHK+++G ++ N +DV+ + ++FS H DAKGIM L
Sbjct: 342 SPLNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDL 401
Query: 240 IQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLL 299
++ PKNV+LVHGE M+ LKEKI E ++ CF+PANGE+ + I + S L
Sbjct: 402 TKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFL 461
Query: 300 KEEA---VKY-NSEPPNPLKERQIHGVLVIKDS 328
K + K+ NS R GVLVI+ S
Sbjct: 462 KSCSNPNFKFSNSTQLRVTDHRTADGVLVIEKS 494
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/399 (33%), Positives = 217/399 (54%), Gaps = 30/399 (7%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 164 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 223
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMN--LQAPIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ PIY+A L +K Y+
Sbjct: 224 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 283
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 284 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 343
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 344 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 403
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF------NLDCFMPANGESCFVQTDMKIS 291
+ I+ +P +V+LVHGE ++M LK + +E+ +++ P N E+
Sbjct: 404 EFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEA---------- 453
Query: 292 IDVSVNLLKEEAVKYNS--EPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIV 349
V++N E+ K P + +++ G+LV ++ + ++ C +S +
Sbjct: 454 --VTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILS---PCD---LSNYTD 505
Query: 350 RFTSNVQISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
S V+ + + P L+Y QL D +E +IQ
Sbjct: 506 LAMSTVKQTQAIPYTGPFNLLYYQLQKLTGD-VEELEIQ 543
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 223 bits (568), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/272 (40%), Positives = 168/272 (61%), Gaps = 3/272 (1%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 164 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 223
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMN--LQAPIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ PIY+A L +K Y+
Sbjct: 224 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 283
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 284 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 343
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 344 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 403
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF 269
+ I+ +P +V+LVHGE ++M LK + +E+
Sbjct: 404 EFIRALKPPHVILVHGEQNEMARLKAALIREY 435
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 134/399 (33%), Positives = 217/399 (54%), Gaps = 30/399 (7%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 164 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 223
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMN--LQAPIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ PIY+A L +K Y+
Sbjct: 224 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 283
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ +GLS +F+
Sbjct: 284 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFES 343
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 344 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 403
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF------NLDCFMPANGESCFVQTDMKIS 291
+ I+ +P +V+LVHGE ++M LK + +E+ +++ P N E+
Sbjct: 404 EFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEA---------- 453
Query: 292 IDVSVNLLKEEAVKYNS--EPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIV 349
V++N E+ K P + +++ G+LV ++ + ++ C +S +
Sbjct: 454 --VTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILS---PCD---LSNYTD 505
Query: 350 RFTSNVQISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
S V+ + + P L+Y QL D +E +IQ
Sbjct: 506 LAMSTVKQTQAIPYTGPFYLLYYQLQKLTGD-VEELEIQ 543
>sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I
OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1
Length = 693
Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 162/287 (56%), Gaps = 6/287 (2%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF V + I+YTGDY+ DRHL AA + + PD+ I EST + S+ RE+ F
Sbjct: 174 MFMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFT 233
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMN--LQAPIYFAVGLTEKATNYYK 118
+H V +GG+VLIP FALGRAQEL ++L+ YW PIY+A L +K Y+
Sbjct: 234 DVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQ 293
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
+I N +IR F N F FKHI P + ++ GP VV ATPG L SGLS +F
Sbjct: 294 TYILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDS 353
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N I+PG+ V+GT+ +++ K++ N + M + Y+SFSAHAD
Sbjct: 354 WCSDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 413
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF---NLDCFMPANGES 281
++ P N++LVHGEA++M+ LK+K+ EF N P N ES
Sbjct: 414 TFLKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCES 460
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 211/384 (54%), Gaps = 23/384 (5%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ I+YTGD++ DRHL A + D+LI ESTY + + + RE+ F
Sbjct: 191 MFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFT 250
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQ---APIYFAVGLTEKATNYY 117
VH+ V+R GK LIPVFALGRAQEL ++L+ YW N Q PIY+A L +K Y
Sbjct: 251 SSVHQVVERNGKCLIPVFALGRAQELLLILDEYW-IANPQLHHVPIYYASALAKKCMGVY 309
Query: 118 KMFITWTNQKIRKTFVQRNMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ +I N ++R F N F+FKHI+ +SF D+ GP V A+PGML SGLS +F
Sbjct: 310 RTYINMMNDRVRAQFDVSNPFEFKHIKNIKGIESF-DDRGPCVFMASPGMLQSGLSRQLF 368
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKG 235
++W + N +++PG+ V+GT+ ++S ++ + + + + + Y+SFSAH+D
Sbjct: 369 ERWCSDKRNGIVIPGYSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQ 428
Query: 236 IMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF-NLDCFMPANGESCFVQTDMKISIDV 294
+ IQ +P +V+LVHG+A++M L++ + +F ++ P N S V
Sbjct: 429 TSEFIQEIQPPHVVLVHGDANEMSRLRQSLVAKFKTINVLTPKNAMS------------V 476
Query: 295 SVNLLKEEAVK-YNSEPPNPLKERQ-IHGVLVIKDSSISLMDVDEACKEVGISRHIVRFT 352
++ E+ K S NP K+ I G+LV KD + ++ + + +I++
Sbjct: 477 ALEFRPEKVAKTLGSIITNPPKQNDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQK 536
Query: 353 SNVQISDSSPI-NKTLELIYDQLL 375
+ + + I TLE IY+Q++
Sbjct: 537 LTLPFAQTYHILISTLEQIYEQII 560
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 195/356 (54%), Gaps = 23/356 (6%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ I+YTGD++ DRHL A I +PD+LI ESTY T + + +E F
Sbjct: 180 MFLIEIAGLRILYTGDFSREEDRHLVQAEIPPVKPDVLICESTYGTQTHEPRLDKEHRFT 239
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMN--LQAPIYFAVGLTEKATNYYK 118
++H + RGG+VL+PVF LGRAQEL +LL+ YW PIY+A L +K + Y+
Sbjct: 240 SQIHHIIKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQ 299
Query: 119 MFITWTNQKIRKTFVQR-NMFDFKHI---RPFDKSFIDNPGPMVVFATPGMLHSGLSLII 174
+I N IR F +R N F FKHI R +K ++ GP V+ A+PG + SG+S +
Sbjct: 300 TYIHTMNDHIRTRFNRRDNPFVFKHISNLRSLEK--FEDRGPCVMMASPGFMQSGVSREL 357
Query: 175 FKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAK 234
++WAP + N LI+ G+ V+GT+ +L+ ++ N Q I +M+++Y+SFSAH D
Sbjct: 358 LERWAPDKRNGLIVSGYSVEGTMARNILNEPDEIIGINGQKIPRRMSVDYISFSAHVDFA 417
Query: 235 GIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF-----NLDCFMPANGESCFVQTDMK 289
+ I + ++++LVHGE + M L+ ++ F ++ P N E +Q +
Sbjct: 418 QNSRFIDEIKAQHIVLVHGEQNNMSKLRAALQARFTARGSDVKIHTPRNCEPLVLQFRAQ 477
Query: 290 ISIDVSVNLLKEEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGIS 345
+ +A+ + P P + + G+L+ KD + +++D + G+S
Sbjct: 478 RTA---------KAIGTIAAKP-PAQGDIVDGLLISKDFAYTILDPKDLTDFTGLS 523
>sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=YSH1 PE=3 SV=2
Length = 827
Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 134/405 (33%), Positives = 217/405 (53%), Gaps = 40/405 (9%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
M+ ++VG +++TGDY+ DRHL A + +PD+LI ESTY T + RE+
Sbjct: 190 MYTIEVGGVKVLFTGDYSREEDRHLNQAEVPPMKPDILICESTYGTGTHLPRLEREQRLT 249
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWE-RMNLQA-PIYFAVGLTEKATNYYK 118
+H +D+GGK L+PVFALGRAQE+ ++L+ YWE +LQ IY+A L +K Y+
Sbjct: 250 GLIHSTLDKGGKCLLPVFALGRAQEILLILDEYWEAHPDLQEFSIYYASALAKKCIAVYQ 309
Query: 119 MFITWTNQKIRKTFVQR--NMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIF 175
+I N IR+ F + N F FK+I+ D+ GP V+ A+PGML SG+S +
Sbjct: 310 TYINMMNDNIRRRFRDQKTNPFRFKYIKNIKNLDRFDDMGPCVMVASPGMLQSGVSRSLL 369
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVK----MAIEYMSFSAHA 231
++WAP N LI+ G+ V+GT+ ++++ + E + Q D+K +A+E +SF+AH
Sbjct: 370 ERWAPDPKNTLILTGYSVEGTMAKQIIN--EPNEIPSAQNPDLKVPRRLAVEELSFAAHV 427
Query: 232 DAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFN--------LDCFMPANGESCF 283
D + + I + KN++LVHGE + M LK + ++ + P N E
Sbjct: 428 DFQQNSEFIDLVDSKNIILVHGELNNMQRLKAALLAKYRGLKNSPREKTIYNPRNCEE-- 485
Query: 284 VQTDMK-ISIDVSVNLLKEEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEV 342
V+ K + + +V + EE P + I GV+V KD + LM V + + V
Sbjct: 486 VELAFKGVKVAKTVGKMAEE---------KPHVGQIISGVVVQKDFNYGLMGVADLREHV 536
Query: 343 GISRHIVRFTSNVQISDSSPINKTLELI---YDQLLSYLQDKSQE 384
G+S TS+V + +N ++L+ +Q+ Y++ + E
Sbjct: 537 GLS------TSSVLERQTVTVNAGVDLVKYHLEQMFGYVEMRETE 575
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 202 bits (515), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 204/375 (54%), Gaps = 28/375 (7%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
M+ V++ +I++TGDY+ DRHL A + RPD+LITESTY T + +E L
Sbjct: 171 MYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLL 230
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-ERMNLQA-PIYFAVGLTEKATNYYK 118
+H + GG+VL+PVFALGRAQEL ++L+ YW ++L++ PIY+A L K ++
Sbjct: 231 NIIHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQ 290
Query: 119 MFITWTNQKIRKTFVQRNMFDF---KHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIF 175
++ N IRK F +RN F F K +R +K D+ GP V+ A+PGML +G+S +
Sbjct: 291 TYVNMMNDNIRKIFAERNPFIFRFVKSLRNLEK--FDDIGPSVILASPGMLQNGVSRTLL 348
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKG 235
++WAP N L++ G+ V+GT+ ++ + ++ + Q I +MA+E +SF+AH D
Sbjct: 349 ERWAPDPRNTLLLTGYSVEGTMAKQITNEPIEIVSLSGQKIPRRMAVEELSFAAHVDYLQ 408
Query: 236 IMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF-----NLDCFMPANGESCFVQTDMKI 290
+ I +++LVHGE + M LK + +F ++ + P N C V +
Sbjct: 409 NSEFIDLVNADHIILVHGEQTNMGRLKSALASKFHNRKVDVKVYTPRN---C-VPLYLPF 464
Query: 291 SIDVSVNLLKEEAVKYNSEPPNPLKERQIHGVLVIKDSSISLM------DVDEACKEVGI 344
+ V L + AV P + + G+L+ KD++ LM D + V
Sbjct: 465 KGERLVRALGKVAVH------KPKEGDIMSGILIQKDANYKLMSAEDLRDFSDLTTTVLT 518
Query: 345 SRHIVRFTSNVQISD 359
+ ++ F S++++++
Sbjct: 519 QKQVIPFFSSMELAN 533
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 168/282 (59%), Gaps = 14/282 (4%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+++ +++TGDY+ DRHL +A + D++I EST+ T + ++ RER
Sbjct: 173 MFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLT 232
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-----ERMNLQAPIYFAVGLTEKATN 115
+ +H V +GG+VL+PVFALGRAQE+ ++L+ YW E N Q PI++A L +K +
Sbjct: 233 QLIHTVVSKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMS 292
Query: 116 YYKMFITWTNQKIRKTF--VQRNMFDFKHI---RPFDKSFIDNPGPMVVFATPGMLHSGL 170
++ ++ N IRK F Q N F FK+I + D+ ++ GP V+ A+PGML +GL
Sbjct: 293 VFQTYVNMMNDDIRKKFKDSQTNPFIFKNISYLKNLDE--FEDFGPSVMLASPGMLQNGL 350
Query: 171 SLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKL-EFENKQI-IDVKMAIEYMSFS 228
S I +KW P E N++++ G+ V+GT+ +L + + N +I I + ++ ++F+
Sbjct: 351 SRDILEKWCPEEKNLVLVTGYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFA 410
Query: 229 AHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFN 270
AH D + ++ I+ N++LVHGE++ M LK + F+
Sbjct: 411 AHVDFRENLEFIELIGASNIILVHGESNPMGRLKSALLSNFS 452
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 165/285 (57%), Gaps = 20/285 (7%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQV++ I++TGDY+ DRHL +A I D+LI EST+ T + + +E+
Sbjct: 170 MFQVEIAGLRILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLT 229
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-----NLQAPIYFAVGLTEKATN 115
+ +H V +GG+VL+PVFALGRAQE+ ++L+ YW + N Q PI++A L K +
Sbjct: 230 QLIHTTVSKGGRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMS 289
Query: 116 YYKMFITWTNQKIRKTF--VQRNMFDFKHIRPFDKSFIDNP------GPMVVFATPGMLH 167
++ ++ N KIRK F Q N F FK+I S++ N GP V+ A+PGML
Sbjct: 290 VFQTYVNMMNDKIRKKFRDSQTNPFIFKNI-----SYLKNLDEFQDFGPSVMLASPGMLQ 344
Query: 168 SGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDV--KMAIEYM 225
+GLS + +KW P E N++++ G+ V+GT+ ++ + + N + + + +E +
Sbjct: 345 NGLSRDLLEKWCPDEKNLVLITGYSVEGTMAKFLMLEPETIPSINNSDVSIPRRCQVEEI 404
Query: 226 SFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFN 270
SF+AH D + ++ ++ N++LVHGE++ M LK + F+
Sbjct: 405 SFAAHVDFRENLEFVEKIGAPNIILVHGESNPMGRLKSALLSNFS 449
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 163/284 (57%), Gaps = 20/284 (7%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+++ +++TGDY+ DRHL +A + ++LI EST+ T + + RER
Sbjct: 169 MFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLT 228
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-----ERMNLQAPIYFAVGLTEKATN 115
+ +H V RGG+VL+PVFALGRAQE+ ++L+ YW E Q PI++A L +K +
Sbjct: 229 QLIHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMS 288
Query: 116 YYKMFITWTNQKIRKTF--VQRNMFDFKHIRPFDKSFIDNP------GPMVVFATPGMLH 167
++ ++ N IRK F Q N F FK+I S++ N GP V+ A+PGML
Sbjct: 289 VFQTYVNMMNDDIRKKFRDSQTNPFIFKNI-----SYLRNLEDFQDFGPSVMLASPGMLQ 343
Query: 168 SGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKL-EFENKQI-IDVKMAIEYM 225
SGLS + ++W P + N++++ G+ ++GT+ ++ + N +I I + +E +
Sbjct: 344 SGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEI 403
Query: 226 SFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF 269
SF+AH D + ++ I+ N++LVHGEA+ M LK + F
Sbjct: 404 SFAAHVDFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNF 447
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 162/280 (57%), Gaps = 20/280 (7%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+++ +++TGDY+ DRHL +A + D+LI EST+ T + + RE+
Sbjct: 168 MFQIEIAGLRVLFTGDYSREIDRHLNSAEVPPLPSDILIVESTFGTATHEPRLHREKKLT 227
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-----ERMNLQAPIYFAVGLTEKATN 115
+ +H V++GG+VL+PVFALGRAQEL ++L+ YW E + Q PI++A L K +
Sbjct: 228 QLIHSTVNKGGRVLMPVFALGRAQELMLILDEYWSQHKEELGSNQIPIFYASNLARKCLS 287
Query: 116 YYKMFITWTNQKIRKTF--VQRNMFDFKHIRPFDKSFIDNP------GPMVVFATPGMLH 167
++ ++ N IRK F Q N F FK+I ++I N GP V+ A+PGML
Sbjct: 288 VFQTYVNMMNDNIRKKFRDSQTNPFIFKNI-----AYIKNLDEFQDFGPSVMLASPGMLQ 342
Query: 168 SGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKL-EFENKQI-IDVKMAIEYM 225
+GLS + ++W P E N++++ G+ V+GT+ +L + N ++ I + +E +
Sbjct: 343 NGLSRDLLERWCPDEKNLVLITGYSVEGTMAKYLLLEPDTIPSVSNPEVTIPRRCRVEEL 402
Query: 226 SFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKI 265
SF+AH D + ++ I+ N++LVHGE + M LK +
Sbjct: 403 SFAAHVDFQENLEFIEQINASNIILVHGEPNPMGRLKSAL 442
>sp|Q59P50|YSH1_CANAL Endoribonuclease YSH1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=YSH1 PE=3 SV=1
Length = 870
Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 160/273 (58%), Gaps = 8/273 (2%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
M+ +++G +++TGDY+ +RHL AA + +PD+LI+EST+ T + + ER
Sbjct: 262 MYFIEIGGLKVLFTGDYSREENRHLHAAEVPPLKPDILISESTFGTGTLEPRIELERKLT 321
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-ERMNLQ-APIYFAVGLTEKATNYYK 118
+H + +GG+VL+PVFALG AQEL ++L+ YW + +LQ +++A L +K Y+
Sbjct: 322 THIHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYE 381
Query: 119 MFITWTNQKIRKTFV---QRNMFDFKHIRPF-DKSFIDNPGPMVVFATPGMLHSGLSLII 174
+ N KIR + + N FDFK+I+ D S + GP VV ATPGML +G+S +
Sbjct: 382 TYTGIMNDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQL 441
Query: 175 FKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENK--QIIDVKMAIEYMSFSAHAD 232
+KWAP N++I+ G+ V+GT+ ++L ++ I ++ IE +SF+AH D
Sbjct: 442 LEKWAPDGKNLVILTGYSVEGTMAKELLKEPTMIQSATNPDMTIPRRIGIEEISFAAHVD 501
Query: 233 AKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKI 265
+ + I+ P V+LVHG++ M LK +
Sbjct: 502 FQQNSEFIEKVSPSKVILVHGDSVPMGRLKSAL 534
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 159/282 (56%), Gaps = 15/282 (5%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
M+ +++G +++TGDY+ DRHL A + +PD+LITEST+ T + + +E
Sbjct: 182 MYFIEIGGLKVLFTGDYSSEEDRHLQVAEVPPIKPDILITESTFGTATHEPRLEKETRMT 241
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWE-RMNLQA-PIYFAVGLTEKATNYYK 118
+H + +GG++L+PVFALGRAQEL ++LE YW +LQ IY+A L K Y+
Sbjct: 242 NIIHSTLLKGGRILMPVFALGRAQELLLILEEYWSLNDDLQNINIYYASSLARKCMAVYQ 301
Query: 119 MFITWTNQKIRKTFV------QRNMFDFKHIRP---FDKSFIDNPGPMVVFATPGMLHSG 169
+ N IR T ++N F FK I+ DK + GP VV A+PGML +G
Sbjct: 302 TYTNIMNDSIRLTTSATNSSKKQNPFQFKFIKSIKNLDK--FQDFGPCVVVASPGMLQNG 359
Query: 170 LSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLE--FENKQIIDVKMAIEYMSF 227
+S + ++WAP N +IM G+ V+GT+ +L+ ++ + I +++IE +SF
Sbjct: 360 VSRELLERWAPDPKNAVIMTGYSVEGTMAKDLLTEPHTIQSAMNSDMTIPRRLSIEEISF 419
Query: 228 SAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF 269
+AH D + I+ P ++LVHGE++ M LK + ++
Sbjct: 420 AAHVDFQQNASFIEKVNPSKIILVHGESNPMGRLKSALLSKY 461
>sp|Q5BEP0|YSH1_EMENI Endoribonuclease ysh1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ysh1 PE=3 SV=1
Length = 884
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 209/436 (47%), Gaps = 48/436 (11%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDF 59
MF + + +I++TGDY+ DRHL A + + + D+LITEST+ + + RE
Sbjct: 180 MFLISIAGLNILFTGDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAAL 239
Query: 60 LKKVHECVDRGGKVLIPVFALGRAQELCILLETYWE-RMNLQA-PIYFAVGLTEKATNYY 117
+K + ++RGG+VL+PVFALGRAQEL ++LE YWE LQ PIY+ + Y
Sbjct: 240 MKSITGVLNRGGRVLMPVFALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVY 299
Query: 118 KMFITWTNQKIRKTFVQR--------------NMFDFKHIRPFDK-SFIDNPGPMVVFAT 162
+ +I N I++ F QR +DFK++R D+ G V+ A+
Sbjct: 300 QTYIGAMNDNIKRLFRQRMAEAEASGDKSVSAGPWDFKYVRSLRSLERFDDVGGCVMLAS 359
Query: 163 PGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIG----------HKVLS----GVKKL 208
PGML +G S + ++WAP E N ++M G+ V+GT+ H V+S G+ +
Sbjct: 360 PGMLQTGTSRELLERWAPNERNGVVMTGYSVEGTMAKQLLNEPDQIHAVMSRAATGMGRT 419
Query: 209 EF-----ENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKE 263
E K +I + ++ +SF+AH D I+ V+LVHGE +M+ LK
Sbjct: 420 RMNGNDEEQKIMIPRRCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKS 479
Query: 264 KI-----KQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLKEEAVKYNSEPPNPLKERQ 318
K+ ++ + + PAN E + V L + N + PL
Sbjct: 480 KLLSLNAEKTVKVKVYTPANCEEVRIPFRKDKIAKVVGKLAQTTLPTDNEDGDGPL---- 535
Query: 319 IHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDSSP--INKTLELIYDQLLS 376
+ GVLV +SLM D+ + G++ + ++ +S +S I LE + +
Sbjct: 536 MAGVLVQNGFDLSLMAPDDLREYAGLATTTITCKQHITLSSASMDLIKWALEGTFGAIEE 595
Query: 377 YLQDKSQEYKIQLTES 392
D+ E + Q +ES
Sbjct: 596 IGTDEDAEKEDQQSES 611
>sp|P0CM88|YSH1_CRYNJ Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=YSH1 PE=3
SV=1
Length = 773
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 192/379 (50%), Gaps = 15/379 (3%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ I+YTGDY+ DRHL A I +PD++I EST+ ++ +E F
Sbjct: 187 MFLIEIAGLKILYTGDYSREEDRHLVMAEIPPVKPDVMICESTFGVHTLPDRKEKEEQFT 246
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-ERMNLQ-APIYFAVGLTEKATNYYK 118
V V RGG+ L+P+ + G QEL +LL+ YW + LQ P+YFA L ++ YK
Sbjct: 247 TLVANIVRRGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYK 306
Query: 119 MFITWTNQKIRKTFVQR-NMFDFKHIRPF--DKSFIDNPGPMVVFATPGMLHSGLSLIIF 175
++ N IR F +R N FDF+ ++ + +N GP V+ ++P + GLS +
Sbjct: 307 TYVHTMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLL 366
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKG 235
++WAP N +I+ G+ ++GT+ +LS +E + ++ ++ +SF AH D
Sbjct: 367 EEWAPDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNVPRRLTVKEISFGAHVDYAQ 426
Query: 236 IMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVS 295
+ IQ ++V+LVHGEAS+M L+ ++ + A G+ + T K ++
Sbjct: 427 NSKFIQEIGAQHVVLVHGEASQMGRLRAALRDTYA------AKGQEINIHTP-KNCEPLT 479
Query: 296 VNLLKEEAVKY--NSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTS 353
+ +E VK + P + G+LV KD S +L+ + G+S +
Sbjct: 480 LTFRQERMVKAIGSLAATRPEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQKQ 539
Query: 354 NVQIS-DSSPINKTLELIY 371
V IS D + + LE +Y
Sbjct: 540 GVAISVDWAVVRWYLEGMY 558
>sp|P0CM89|YSH1_CRYNB Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=YSH1 PE=3 SV=1
Length = 773
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 192/379 (50%), Gaps = 15/379 (3%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ I+YTGDY+ DRHL A I +PD++I EST+ ++ +E F
Sbjct: 187 MFLIEIAGLKILYTGDYSREEDRHLVMAEIPPVKPDVMICESTFGVHTLPDRKEKEEQFT 246
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-ERMNLQ-APIYFAVGLTEKATNYYK 118
V V RGG+ L+P+ + G QEL +LL+ YW + LQ P+YFA L ++ YK
Sbjct: 247 TLVANIVRRGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYK 306
Query: 119 MFITWTNQKIRKTFVQR-NMFDFKHIRPF--DKSFIDNPGPMVVFATPGMLHSGLSLIIF 175
++ N IR F +R N FDF+ ++ + +N GP V+ ++P + GLS +
Sbjct: 307 TYVHTMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLL 366
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKG 235
++WAP N +I+ G+ ++GT+ +LS +E + ++ ++ +SF AH D
Sbjct: 367 EEWAPDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNVPRRLTVKEISFGAHVDYAQ 426
Query: 236 IMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVS 295
+ IQ ++V+LVHGEAS+M L+ ++ + A G+ + T K ++
Sbjct: 427 NSKFIQEIGAQHVVLVHGEASQMGRLRAALRDTYA------AKGQEINIHTP-KNCEPLT 479
Query: 296 VNLLKEEAVKY--NSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTS 353
+ +E VK + P + G+LV KD S +L+ + G+S +
Sbjct: 480 LTFRQERMVKAIGSLAATRPEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQKQ 539
Query: 354 NVQIS-DSSPINKTLELIY 371
V IS D + + LE +Y
Sbjct: 540 GVAISVDWAVVRWYLEGMY 558
>sp|Q4WRC2|YSH1_ASPFU Endoribonuclease ysh1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=ysh1 PE=3 SV=1
Length = 872
Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 122/404 (30%), Positives = 198/404 (49%), Gaps = 50/404 (12%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDF 59
MF + + +I++TGDY+ DRHL A + K + D+LITEST+ + + RE
Sbjct: 181 MFLISIAGLNILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAAL 240
Query: 60 LKKVHECVDRGGKVLIPVFALGRAQELCILLETYWE-RMNLQA-PIYFAVGLTEKATNYY 117
+K + ++RGG+VL+PVFALGRAQEL ++L+ YWE LQ PIY+ + Y
Sbjct: 241 MKSITGILNRGGRVLMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVY 300
Query: 118 KMFITWTNQKIRKTFVQR--------------NMFDFKHIRPFDK-SFIDNPGPMVVFAT 162
+ +I N I++ F QR +DFK +R D+ G V+ A+
Sbjct: 301 QTYIGAMNDNIKRLFRQRMAEAEASGDKSASAGPWDFKFVRSLRSLERFDDVGGCVMLAS 360
Query: 163 PGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLS------------------- 203
PGML +G S + ++WAP E N ++M G+ V+GT+ ++L+
Sbjct: 361 PGMLQTGTSRELLERWAPNERNGVVMTGYSVEGTMAKQLLNEPEQIPAVMSRSAGGVSRR 420
Query: 204 GVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKE 263
G+ + E K +I + ++ +SF+AH D I+ V+LVHGE +M+ LK
Sbjct: 421 GLAGTDEEQKIMIPRRCTVDEISFAAHVDGVENRNFIEEVAAPVVILVHGEKHQMMRLKS 480
Query: 264 KI-----KQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLKEEAVKYNSEPPNPLKE-R 317
K+ + + + PAN + + K I V L + A PP+ + R
Sbjct: 481 KLLSLNADKAVKVKVYTPANCDEVRIPF-RKDKIAKVVGKLAQVA------PPSDQDDGR 533
Query: 318 QIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDSS 361
+ GVLV +SLM D+ + G++ + ++ +S +S
Sbjct: 534 LMSGVLVQNGFDLSLMAPDDLREYAGLTTTTITCKQHITLSSAS 577
>sp|Q8WZS6|YSH1_NEUCR Endoribonuclease ysh-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ysh-1
PE=3 SV=1
Length = 850
Score = 173 bits (438), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 201/407 (49%), Gaps = 47/407 (11%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDF 59
MF +++ I +TGDY+ DRHL +A + K + D+LITESTY + RE+
Sbjct: 179 MFLIEIAGLKIFFTGDYSREEDRHLISAKVPKGVKIDVLITESTYGIASHIPRPEREQAL 238
Query: 60 LKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMN--LQAPIYFAVGLTEKATNYY 117
+K + ++RGG+VL+PVFALGRAQEL ++L+ YW + + PIY+A L K Y
Sbjct: 239 MKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHAEYQKYPIYYASNLARKCMLVY 298
Query: 118 KMFITWTNQKIRKTFVQR--------------NMFDFKHIRPFDKSF--IDNPGPMVVFA 161
+ ++ N I++ F +R +DF+ IR KS ++ G V+ A
Sbjct: 299 QTYVGSMNDNIKRLFRERLAESESSGDGAGKGGPWDFRFIRSL-KSLDRFEDVGGCVMLA 357
Query: 162 TPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVL--------------SGVKK 207
+PGML +G+S + ++WAP E N +I+ G+ V+GT+ ++L +G ++
Sbjct: 358 SPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQLLQEPEQIQAVMSRNIAGARR 417
Query: 208 LEFEN--KQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKI 265
+ K +I + ++ SF+AH D + I+ V+LVHGE M+ LK K+
Sbjct: 418 GPGGDAEKVMIPRRCTVQEFSFAAHVDGVENREFIEEVAAPVVILVHGEVHNMMRLKSKL 477
Query: 266 -----KQEFNLDCFMPANGESCFVQTDMKISIDVSVNL------LKEEAVKYNSEPPNPL 314
+E + F P N E + V L LKE ++ P+
Sbjct: 478 LSLNATKEHKVKVFSPRNCEELRIPFKTDKVAKVVGKLASIPPSLKEAKTGHDGPLPSST 537
Query: 315 KERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDSS 361
+ + I GVLV D +SLM ++ + G++ + +++S +
Sbjct: 538 EPQLITGVLVQNDFKMSLMAPEDLREYAGLTTTTIACKQRLKLSAAG 584
>sp|Q4IPN9|YSH1_GIBZE Endoribonuclease YSH1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=YSH1 PE=3 SV=2
Length = 833
Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 198/391 (50%), Gaps = 54/391 (13%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDF 59
MF +++ +I +TGDY+ DRHL +A + K + D+LITESTY + RE+
Sbjct: 180 MFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQAL 239
Query: 60 LKKVHECVDRGGKVLIPVFALGRAQELCILLETYWER-MNLQA-PIYFAVGLTEKATNYY 117
+K + ++RGG+VL+PVFALGRAQEL ++L+ YW + + Q PIY+A L K Y
Sbjct: 240 MKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIY 299
Query: 118 KMFITWTNQKIRKTFVQR--------------NMFDFKHIRPFDK-SFIDNPGPMVVFAT 162
+ ++ N I++ F +R +DFK+IR D+ G V+ A+
Sbjct: 300 QTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDRFDDVGGCVMLAS 359
Query: 163 PGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKV--------------LSGVKKL 208
PGML +G+S + ++WAP E N +I+ G+ V+GT+ ++ ++G +++
Sbjct: 360 PGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRM 419
Query: 209 EFEN--KQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKI- 265
+ K +I + +++ SF+AH D + I+ + V+LVHGE M+ LK K+
Sbjct: 420 PGGDGEKVLIPRRCSVQEYSFAAHVDGVENREFIEEVQAPVVILVHGEQHNMMRLKSKLL 479
Query: 266 ----KQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLKEEAVKYNS-EPPNPLKERQ-- 318
+ + + P N E ++ I + + + K +PP + Q
Sbjct: 480 SLNANKTAKVKVYSPRNCE--------ELRIPFKADKIAKVVGKLACIQPPQSIHPDQTA 531
Query: 319 ----IHGVLVIKDSSISLMDVDEACKEVGIS 345
+ GVLV D +SLM ++ + G++
Sbjct: 532 TPPLVTGVLVQNDFKLSLMAPEDLREYAGLN 562
>sp|Q6NXH8|MET25_MOUSE Methyltransferase-like protein 25 OS=Mus musculus GN=Mettl25 PE=2
SV=1
Length = 597
Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 138/228 (60%), Gaps = 14/228 (6%)
Query: 804 ITHFVTPDSDISSILSQAYPQDSLHNVCIMGLHTCGDLSGTALRLFT-KSSLQCLVQVGC 862
+T F+T DS + I+ + L + ++GLHTCGDL+ + LR+FT K+ ++ + VGC
Sbjct: 349 LTSFITADSQLHDII------EDLEDCLMVGLHTCGDLAPSTLRIFTSKAEVKAVCSVGC 402
Query: 863 CYHLLEEEFIRSPFWKDVDQSLYEHGYGFPLSEHLRSRKFFLGRNVRMSGTQSPERVIDL 922
CYHLL EEF + D+ E+ +GFP+ +L+ ++ GRN RMS + +RV
Sbjct: 403 CYHLLSEEFEN----QHKDRCANEN-WGFPMCHYLKEERWCCGRNARMSACLALQRVAVG 457
Query: 923 KQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATKCSNFVEYVHRAVDKLKLD-LEV 981
+ T LFYRA+L+ ++ I+ E + VG++ +KCS+F+EYV ++ KL LD +V
Sbjct: 458 QGLPTESLFYRAVLQNIIKDYYGISKCE-QHVGKIYSKCSSFLEYVRMSLKKLGLDESKV 516
Query: 982 DDEEVTRLFNSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1029
+E + + +++ L+ + LK LAP IE LI+LDR+ YL+EQ
Sbjct: 517 SEEIIMDYYENYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQ 564
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 69/117 (58%)
Query: 620 VAAVTNSCDSSHIIDLGSTITVDELFSKLQARKCGLVVESAKVSQLMSEKKSYEVQVMSQ 679
V A + + +LG ++L + LQ K V E+ K + M+ KKS+EVQ MS+
Sbjct: 97 VEAFARTAKHYSVQNLGLCTPSEQLLTALQGNKRQRVDENVKAIEFMNTKKSHEVQAMSE 156
Query: 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRSKKLE 736
++ ++ + C IID+G G+GYLS+ L+L++G +D + NTHGA R++KL+
Sbjct: 157 LICSIADYCGLKQIIDVGSGKGYLSSFLSLKYGLNVYGIDSSNTNTHGAKERNRKLK 213
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 485 IKNTIDEMIEFITPNIACVNTHTVHFMVEKLWETTI---PKAILSQVNNSP--------- 532
+ + + ++ F+ +A + HTV F + +W+ + P+++L+ + S
Sbjct: 16 LHDKLQGLLSFLRGALAISSAHTVDFYTKSVWQELVDLPPESVLAALRESAVEAEPREAE 75
Query: 533 ---SFDSLLEEFWKSRQDNHVETNSELVKFFQAADKFRLTSLMNGESIITVDELFSKLQA 589
F L + F ET+ +L+ A + S+ N ++L + LQ
Sbjct: 76 TGSGFTELPKIF--------CETSQKLLSVEAFARTAKHYSVQNLGLCTPSEQLLTALQG 127
Query: 590 RKCGQVVESAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGS 637
K +V E+ K + M+ KKS+EVQ MS+++ ++ + C IID+GS
Sbjct: 128 NKRQRVDENVKAIEFMNTKKSHEVQAMSELICSIADYCGLKQIIDVGS 175
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 1044 TQVDDEEVTRLFDSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1094
++V +E + +++++ L+ + LK LAP IE LI+LDR+ YL+EQ
Sbjct: 514 SKVSEEIIMDYYENYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQ 564
>sp|Q8N6Q8|MET25_HUMAN Methyltransferase-like protein 25 OS=Homo sapiens GN=METTL25 PE=2
SV=2
Length = 603
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 151/270 (55%), Gaps = 30/270 (11%)
Query: 763 NRQTSHASVEHHGKNWKRKSKAPVVSIKDEELVVCKDKCKQITHFVTPDSDISSILSQAY 822
NR+TS A+ E K + S++ + S +T F+T DS++ I+
Sbjct: 333 NRETSEANKERR-KMTSKSSESNIYS--------------PLTSFITADSELHDIIKD-- 375
Query: 823 PQDSLHNVCIMGLHTCGDLSGTALRLFTKSS-LQCLVQVGCCYHLLEEEFIRSPFWKDVD 881
L + ++GLHTCGDL+ LR+FT +S ++ + VGCCYHLL EEF ++
Sbjct: 376 ----LEDCLMVGLHTCGDLAPNTLRIFTSNSEIKGVCSVGCCYHLLSEEF------ENQH 425
Query: 882 QSLYEHGYGFPLSEHLRSRKFFLGRNVRMSGTQSPERVIDLKQTQTLPLFYRALLEKYLR 941
+ + +GFP+ +L+ ++ GRN RMS + ERV + T LFYRA+L+ ++
Sbjct: 426 KERTQEKWGFPMCHYLKEERWCCGRNARMSACLALERVAAGQGLPTESLFYRAVLQDIIK 485
Query: 942 SKITINDEEPKVVGRLATKCSNFVEYVHRAVDKLKLD-LEVDDEEVTRLFNSHQREYEYL 1000
I + + VG++ +KCS+F++YV R++ KL LD ++ ++ + + ++ L
Sbjct: 486 DCYGITKCD-RHVGKIYSKCSSFLDYVRRSLKKLGLDESKLPEKIIMNYYEKYKPRMNEL 544
Query: 1001 QIYYFLKTALAPVIEALIVLDRVLYLREQQ 1030
+ + LK LAP IE LI+LDR+ YL+EQ+
Sbjct: 545 EAFNMLKVVLAPCIETLILLDRLCYLKEQE 574
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 52/255 (20%)
Query: 485 IKNTIDEMIEFITPNIACVNTHTVHFMVEKLWETTI---PKAILSQVNNSPSFDSLLEEF 541
++ + +++F+ ++ N HTV F E +WE + P+ +L+ + S S L
Sbjct: 16 LRAKLQGLLQFLRDALSISNAHTVDFYTESVWEELVDLPPETVLAALRKSASETEALP-- 73
Query: 542 WKSRQDNHVETNSELVKFFQAADKFRLTSLMNGESIITVDELFSKLQARKCGQVVESAKV 601
SE +A + +T F K+ ++V V
Sbjct: 74 ------------SETRPLVEAEWEAGMTD-------------FPKIFCETSQKLV---SV 105
Query: 602 SQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGSTITVDELFSKLQARKCGLVVESAK 661
K Y VQ +LG ++L L+ + + E+ K
Sbjct: 106 EAFALAAKYYSVQ-------------------NLGICTPFEQLLVALRGNQNQRIGENQK 146
Query: 662 VSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYN 721
+ M+ KKS+EVQ MS++++++ + +IDLG G+GYLS+ L+L++G K +D +
Sbjct: 147 AVEFMNMKKSHEVQAMSELISSIADYYGIKQVIDLGSGKGYLSSFLSLKYGLKVYGIDSS 206
Query: 722 QVNTHGAAVRSKKLE 736
NTHGA R++KL+
Sbjct: 207 NTNTHGAEERNRKLK 221
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 154/281 (54%), Gaps = 10/281 (3%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATT--IRDSKRCRERDFLK 61
++V + I+YTGD N R L A D D+LI ESTY + I+ +++ ER ++
Sbjct: 141 LEVDGKKILYTGDINEGVSRTLLPADTDIDEIDVLIIESTYGSPLDIKPARKTLERQLIE 200
Query: 62 KVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQ-APIYFAVGLTEKATNYYKMF 120
++ E ++ GGKV+IPVFA+GRAQE+ +++ Y L+ PIY L AT Y +
Sbjct: 201 EISETIENGGKVIIPVFAIGRAQEILLIINNYIRSGKLRDVPIYTDGSLIH-ATAVYMSY 259
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I W N KI K V+ + F I+ D+S + N P ++ +T GM+ G ++ + K
Sbjct: 260 INWLNPKI-KNMVENRINPFGEIKKADESLVFNKEPCIIVSTSGMVQGG-PVLKYLKLLK 317
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLE-FENKQIIDVKMAIEYMSFSAHADAKGIMQL 239
N LI+ G+ +GT+G ++ G K+++ F+NK I ++ + + FSAH D +++
Sbjct: 318 DPKNKLILTGYQAEGTLGRELEEGAKEIQPFKNK--IPIRGKVVKIEFSAHGDYNSLVRY 375
Query: 240 IQYC-EPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANG 279
I+ +P+ +++HGE + + I + + F+P G
Sbjct: 376 IKKIPKPEKAIVMHGERYQSLSFAMTIWKTLKIPTFVPVRG 416
>sp|Q58633|Y1236_METJA Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1236 PE=4 SV=1
Length = 634
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 154/298 (51%), Gaps = 23/298 (7%)
Query: 7 GNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYAT--TIRDSKRCRERDFLKKVH 64
G ++ YTGD R L A R + LI ESTY + + ER+ L+ V
Sbjct: 341 GLYNLAYTGDIKFETSRLLEPAVCQFPRLETLIIESTYGAYDDVLPEREEAERELLRVVS 400
Query: 65 ECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMFITWT 124
E DRGGKVLIPVF +GRAQEL ++LE + + AP+Y G+ +AT + + +
Sbjct: 401 ETTDRGGKVLIPVFGVGRAQELMLVLEEGYNQGIFNAPVYLD-GMIWEATAIHTAYPEYL 459
Query: 125 NQKIRKTFVQR--NMF---DFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++++R+ N F FK + + + ID+ P V+ AT GML G S+ K
Sbjct: 460 SKEMRQKIFHEGDNPFLSEVFKRVGSTNERRKVIDSDEPCVILATSGMLTGGPSVEYLKH 519
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEF--ENKQIIDVKMAIEYMS---FSAHAD 232
AP E N +I G+ +GT+G KV SG K++ N + + + ++ + FS H+D
Sbjct: 520 LAPDEKNAIIFVGYQAEGTLGRKVQSGWKEIPIITRNGKTKSIPINLQVYTIEGFSGHSD 579
Query: 233 AKGIMQLIQYCE-----PKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQ 285
K QLI+Y P+ +++VHGE SK + + +++ F ++P N ++ V+
Sbjct: 580 RK---QLIKYIRRLKPSPEKIIMVHGEESKCLDFADTVRRLFKKQTYVPMNLDAIRVK 634
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 10/205 (4%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYAT-TIRDSKRCRERD 58
++++ + ++Y DYN +RHL + RP +LIT++ +A T + +++ R+++
Sbjct: 159 IWRITKDGEDVIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKE 218
Query: 59 FLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYK 118
FL + + ++ GG VL+PV GR EL ++LE +W + PIYF ++ +Y K
Sbjct: 219 FLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVK 278
Query: 119 MFITWTNQKIRKTF--VQRNMFDFKHIRPF-DKSFIDN--PGPMVVFATPGMLHSGLSLI 173
F+ W + I K+F + N F +H+ +K+ +DN PGP VV A+ L +G +
Sbjct: 279 SFLEWMSDSISKSFETSRDNAFLLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFARE 338
Query: 174 IFKKWAPVENNMLIMPGFCVQGTIG 198
IF +WA N+++ F G G
Sbjct: 339 IFVEWANDPRNLVL---FTETGQFG 360
>sp|Q60355|Y047_METJA Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0047 PE=3 SV=2
Length = 428
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 21/281 (7%)
Query: 8 NQSIVYTGDYNMTPDRHLGAAWIDKCRPDL--LITESTYATTIRDSKRCRERDFLKKVHE 65
N++I+YTGD + R A + + D+ LI ESTY +I ++ E F++K+ E
Sbjct: 157 NKTILYTGDVKLRDTRLTKGADLSYTKDDIDILIIESTYGNSIHPDRKAVELSFIEKIKE 216
Query: 66 CVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYF---AVGLTEKATNYYKMFIT 122
+ RGG LIPVFA+ RAQE+ ++L Y N+ APIY AV +T+ NY M
Sbjct: 217 ILFRGGVALIPVFAVDRAQEILLILNDY----NIDAPIYLDGMAVEVTKLMLNYKHMLNE 272
Query: 123 WTN-QKIRKT--FVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWA 179
+ +K K ++++ K I K N G +V T GML G L K +
Sbjct: 273 SSQLEKALKNVKIIEKSEDRIKAIENLSK----NGG--IVVTTAGMLDGGPILYYLKLFM 326
Query: 180 PVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQL 239
N L++ G+ V+ + G ++ K F K I + + +FS HA + ++
Sbjct: 327 HNPKNALLLTGYQVRDSNGRHLIETGKI--FIGKDEIKPNLEVCMYNFSCHAGMDELHEI 384
Query: 240 IQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGE 280
I+ P+ +++ HGE + L+ E D P GE
Sbjct: 385 IKKVNPELLIIQHGEEVQATILRN-WALEHGFDAITPKLGE 424
>sp|Q5SLP1|RNSE_THET8 Ribonuclease TTHA0252 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=TTHA0252 PE=1 SV=1
Length = 431
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 130/259 (50%), Gaps = 22/259 (8%)
Query: 8 NQSIVYTGDY-----NMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKK 62
+++VY+GD ++ PD L DL++ E TY R R+FL+
Sbjct: 154 GRTLVYSGDLGNREKDVLPDPSL------PPLADLVLAEGTYGDRPHRPYRETVREFLEI 207
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMFIT 122
+ + + +GGKVLIP FA+ RAQE+ +L T+ R+ +APIY + + + Y +
Sbjct: 208 LEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRLVR 266
Query: 123 WTNQKIRKTFVQ-RNMFDFKHIRPFD-----KSFIDNPGPMVVFATPGMLHSGLSLIIFK 176
+ +++++ F+Q +N F + + K+ PGPMVV A GML G L K
Sbjct: 267 YFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLK 326
Query: 177 KWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYM-SFSAHADAKG 235
N L+ G+ QG +G ++++ + ++ + ++ ++ + FS HA
Sbjct: 327 HGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEE-VPLRASVHTLGGFSGHAGQDE 385
Query: 236 IMQLIQYCEPKNVLLVHGE 254
++ +Q EP+ V+LVHGE
Sbjct: 386 LLDWLQ-GEPR-VVLVHGE 402
>sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2
OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1
Length = 756
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 14/231 (6%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VKVG + IVY D+N +RHL +D+ RP LLIT++ A + +R R+ +
Sbjct: 163 VKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
+ + V G VLI V GR EL +L+ W+ Y L + N + K
Sbjct: 223 ILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKS 282
Query: 120 FITWTNQKIRKTF--VQRNMFDFKHIRPFDKSFID----NPGPMVVFATPGMLHSGLSLI 173
I W + K+ K F + N F FKHI+ S D GP VV A+ L SG +
Sbjct: 283 QIEWMSDKLTKAFEGARNNPFQFKHIQ-LCHSLADVYKLPAGPKVVLASTPDLESGFTRD 341
Query: 174 IFKKWAPVENNMLIMPGFCVQGTIGHKVLSGV---KKLEFENKQIIDVKMA 221
+F +WA NN +I+ GT+ +++ K++E + ++ +D++ A
Sbjct: 342 LFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGA 392
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 213 KQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLD 272
++ I+V ++ + F +D + +++++ P+ V+++HG A + +Q
Sbjct: 537 RKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGAR 596
Query: 273 CFMPANGESCFVQTDMKI 290
F P GE V +++ I
Sbjct: 597 VFTPQKGEIIDVTSEIHI 614
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 9/204 (4%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHL-GAAWIDKCRPDLLITESTYATTIRDSKRCRERDF 59
++++ + +VY D+N +RHL G A RP +LIT++ A KR +++DF
Sbjct: 159 VWKITKDGEDVVYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDF 218
Query: 60 LKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKM 119
+ + + + GG VL+P+ GR E+ ++LE YW + +L PIYF ++ +Y K
Sbjct: 219 IDALVKVLTGGGSVLLPIDTAGRVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKS 278
Query: 120 FITWTNQKIRKTF--VQRNMFDFKHI-RPFDKSFIDNPG--PMVVFATPGMLHSGLSLII 174
F+ W N I K+F + N F K + + +K ++ G P VV A+ L G S I
Sbjct: 279 FLEWMNDSISKSFEHTRDNAFLLKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDI 338
Query: 175 FKKWAPVENNMLIMPGFCVQGTIG 198
F A N+++ F +G G
Sbjct: 339 FVDMANEAKNLVL---FTEKGQFG 359
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 212 NKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNL 271
N+ + VK ++ YM F +D + + +I + P ++LVHG A LK + +L
Sbjct: 531 NEMTVQVKCSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKNSDL 590
Query: 272 DCFMPANGESCFVQTDM 288
+ P E+ V +D+
Sbjct: 591 HVYAPQIEETIDVTSDL 607
>sp|O74740|CFT2_SCHPO Cleavage factor two protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cft2 PE=1 SV=1
Length = 797
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 8 NQSIVYTGDYNMTPDRHL-GAAWIDKC-------RPDLLITESTYATTIRDSKRCRERDF 59
++S++Y D+N + D+HL GAA RP+ LIT++ + S++ R+ F
Sbjct: 152 SESVLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSIPSRKKRDEAF 211
Query: 60 LKKVHECVDRGGKVLIPVFALGRAQELCILLETYW--ERMNLQAPIYFAVGLTEKATNYY 117
++ V + +GG VL+PV A R ELC +L+ +W + L PI F + K +Y
Sbjct: 212 IESVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQPPLPFPILFLSPTSTKTIDYA 271
Query: 118 KMFITWTNQKIRKTF-VQRNMFDFKHIRPF-DKSFIDN--PGPMVVFATPGMLHSGLSLI 173
K I W I + F + N+ +F++I D S I + PGP V+ AT L G S
Sbjct: 272 KSMIEWMGDNIVRDFGINENLLEFRNINTITDFSQISHIGPGPKVILATALTLECGFSQR 331
Query: 174 IFKKWAPVENNMLIM 188
I +N LI+
Sbjct: 332 ILLDLMSENSNDLIL 346
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus
musculus GN=Cpsf2 PE=1 SV=1
Length = 782
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 8/203 (3%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W + K+ + F + N F F+H+ P P VV A+ L G S +F
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIG 198
+W N +I+ GT+
Sbjct: 343 IQWCQDPKNSIILTYRTTPGTLA 365
>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2
OS=Xenopus laevis GN=cpsf2 PE=1 SV=1
Length = 783
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 16/226 (7%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFDKSFID---NPGPMVVFATPGMLHSGLSLII 174
+ W + K+ + F + N F F+H+ + D P P VV A+ L G S +
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLT-LCHGYSDLARVPSPKVVLASQPDLECGFSREL 341
Query: 175 FKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKM 220
F +W N +I+ GT+ + ++ +++IID+++
Sbjct: 342 FIQWCQDPKNSVILTYRTTPGTLARFL------IDHPSERIIDIEL 381
>sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo
sapiens GN=CPSF2 PE=1 SV=2
Length = 782
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 8/203 (3%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W + K+ + F + N F F+H+ P P VV A+ L G S +F
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIG 198
+W N +I+ GT+
Sbjct: 343 IQWCQDPKNSIILTYRTTPGTLA 365
>sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos
taurus GN=CPSF2 PE=1 SV=1
Length = 782
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 8/203 (3%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W + K+ + F + N F F+H+ P P VV A+ L G S +F
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIG 198
+W N +I+ GT+
Sbjct: 343 IQWCQDPKNSIILTYRTTPGTLA 365
>sp|Q55470|Y514_SYNY3 Uncharacterized protein sll0514 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0514 PE=4 SV=1
Length = 554
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 38/287 (13%)
Query: 11 IVYTGDYNMTPDRHL----GAAW--IDKCRPDLLITESTYATTIRDSKRCRERDFLKKVH 64
++YTGDY ++ HL G A + +PD+LI E Y +R +E+ F++ +
Sbjct: 155 VIYTGDYCLS---HLQLVDGLALTPLRGLKPDVLILEGHYGNRRLPHRRQQEKQFIQAIE 211
Query: 65 ECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMFITWT 124
+ +G +L+PV LG AQE+ LL T+ + Q ++ + + + Y+ I
Sbjct: 212 TVLAKGRNILLPVPPLGLAQEILKLLRTHHQFTGRQVNLWAGESVA-RGCDAYQGIIDHL 270
Query: 125 NQKIRKTFVQRNMF----DFKHIRPF--DKSFIDNPGPMVVFAT--PGMLHSGLSLIIFK 176
+R + +F + H+RP D+ + P +V T P S +L
Sbjct: 271 PDNVRNFAQHQPLFWDDKVYPHLRPLTDDQGELSLSAPSIVITTTWPAFWPSPAALPGL- 329
Query: 177 KWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGI 236
W +L +P V + L K E E+ + D H+D +
Sbjct: 330 -WTVFMPQLLTLPSCLV--NFAWQDLEEFPKYELEDYLLAD------------HSDGRNT 374
Query: 237 MQLIQYCEPKNVLLVHGEASKMVFLK--EKIKQEFNLDCFMPANGES 281
QLI P++++ VHG+ S + L E+++ + L PA G +
Sbjct: 375 TQLIHNLRPQHLVFVHGQPSDIEDLTSLEELQSRYQLHS--PAAGNA 419
>sp|Q8BZG5|RRNAD_MOUSE Protein RRNAD1 OS=Mus musculus GN=Rrnad1 PE=2 SV=1
Length = 475
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 150/376 (39%), Gaps = 68/376 (18%)
Query: 659 SAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSL 718
+A + + KK +E++ + ++V +++ + ++D+G GQG+LS ++L
Sbjct: 123 TAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSL--------- 173
Query: 719 DYNQVNTHGAAVRSKKLEDSEKESKGPFQSYAGVINKKLWMRTQNRQTSHASVEHHGKNW 778
G + K LE +++ K A ++++L + H + G
Sbjct: 174 --------GLGLMVKSLEGNQRLVK-----RAQHLDQELLKALDKMEKRHPKMVQRGP-- 218
Query: 779 KRKSKAPVVSIKDEELVVCKDKCKQITHFVTPDSDISSILSQAY-PQDSLHNVCIMGLHT 837
+ + + +V+P + +L P S + + GLH
Sbjct: 219 -------------------RHRPHHVVQWVSPTTLCEELLLPLERPGQSSARLLLTGLHA 259
Query: 838 CGDLSGTALRLFTK-SSLQCLVQVGCCYHLLEEEFIRSPFWKDVDQSLYEHGYGFPLSEH 896
CGDLS LR F + L VGCCY L + P + Q + G P E
Sbjct: 260 CGDLSVALLRHFCCCPEVVALASVGCCYMKLSD-----PGSYPLSQWIA----GLPGHE- 309
Query: 897 LRSRKFFLGRNVRMSGTQSPERVIDLKQTQTLPL---FYRALLEKYLRSKITINDEEPKV 953
L +R + E + L +RA LE +R ++ P V
Sbjct: 310 -------LPYRLREGACHALEDYAERLHKAEPGLQTHCFRAALETVIR-QVYPELRRPGV 361
Query: 954 VGRLATKCSNFVEYVHRAVDKLKLDLEVDDEEVTRLFNSHQREYEYLQIYYFLKTALAPV 1013
G EYV + + ++ LD ++ + +HQ + + ++ L LAP+
Sbjct: 362 QGIPRVHELKIEEYVKQGLKRVGLDPQLPLDLAA--LQAHQAQENRVVAFFSLALLLAPL 419
Query: 1014 IEALIVLDRVLYLREQ 1029
+E LI+LDR+LYL+EQ
Sbjct: 420 VETLILLDRMLYLQEQ 435
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 1055 FDSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1094
+HQ + + ++ L LAP++E LI+LDR+LYL+EQ
Sbjct: 396 LQAHQAQENRVVAFFSLALLLAPLVETLILLDRMLYLQEQ 435
>sp|Q6AYG0|RRNAD_RAT Protein RRNAD1 OS=Rattus norvegicus GN=Rrnad1 PE=2 SV=1
Length = 475
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 146/378 (38%), Gaps = 72/378 (19%)
Query: 659 SAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSL 718
+A + + KK +E++ + ++V +++ + ++D+G GQG+LS ++L G SL
Sbjct: 123 TAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSL 182
Query: 719 DYNQVNTHGAAVRSKKLEDSEKESKGPFQSYAGVINKKLWMRTQNRQTSHASVEHHGKNW 778
+ N+ R+++L+ Q ++K + Q S HH W
Sbjct: 183 EGNKR----LVARAQRLD----------QELLQALDKMEKRHPKMVQRSPRHRPHHVVQW 228
Query: 779 KRKSKAPVVSIKDEELVVCKDKCKQITHFVTPDSDISSILSQA-YPQDSLHNVCIMGLHT 837
V+P + +L P S + + GLH
Sbjct: 229 -----------------------------VSPTTLCEELLLPLEMPGQSSTRLLLTGLHA 259
Query: 838 CGDLSGTALRLFTKSS-LQCLVQVGCCYHLLEEEFIRSPFWKDVDQSLYEHGYGFPLSEH 896
CGDLS LR F + L VGCCY L + L + G P E
Sbjct: 260 CGDLSVALLRHFCCCPEVVALASVGCCYMKLSDPG---------SYPLSQWVAGLPGHE- 309
Query: 897 LRSRKFFLGRNVRMSGTQSPERVIDLKQTQTLPL---FYRALLEKYLRSKITINDEEPKV 953
L +R + E + Q L +RA LE +R ++ P V
Sbjct: 310 -------LPYRLREGACHALEDYAERLQKAGPGLQTHCFRAALEAVIR-QVCPELRRPGV 361
Query: 954 VGRLATKCSNFVEYVHRAVDKLKLD--LEVDDEEVTRLFNSHQREYEYLQIYYFLKTALA 1011
G EYV + + ++ LD L +D + R + ++ L LA
Sbjct: 362 QGIPRVHELKIEEYVQQGLQRVGLDPQLPLDQAALQAHQAQENR----VVAFFSLALLLA 417
Query: 1012 PVIEALIVLDRVLYLREQ 1029
P++E LI+LDR+LYL+EQ
Sbjct: 418 PLVETLILLDRMLYLQEQ 435
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 1068 YYFLKTALAPVIEALIVLDRVLYLREQ 1094
++ L LAP++E LI+LDR+LYL+EQ
Sbjct: 409 FFSLALLLAPLVETLILLDRMLYLQEQ 435
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1
Length = 843
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 9/208 (4%)
Query: 5 KVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKKV 63
+V + IVY D+N +RHL D RP LLIT + + + + ++ R+ + K+
Sbjct: 163 RVTGEDIVYCVDFNHKKERHLNGCSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKI 222
Query: 64 HECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKMF 120
V + G +I + GR EL LL+ W + Y V ++ A++ + K
Sbjct: 223 LRTVRQKGDCMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQ 282
Query: 121 ITWTNQKIRK---TFVQRNMFDFKHIR--PFDKSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W N+K+ K + + N F KH+ + + P VV + + SG S +F
Sbjct: 283 LEWMNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLS 203
W N +I+ T+ K+++
Sbjct: 343 LDWCSDPRNGVILTARPASFTLAAKLVN 370
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2
Length = 842
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 94/207 (45%), Gaps = 9/207 (4%)
Query: 5 KVGNQSIVYTGDYNMTPDRHL-GAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKV 63
++ + I+Y D+N DRHL G ++ + RP LLIT + + + + ++ R+ + K+
Sbjct: 163 RITGEDIIYCVDFNHRKDRHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKI 222
Query: 64 HECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKMF 120
V + G +I + GR EL LL+ W + Y V ++ A++ + K
Sbjct: 223 LRTVRQKGDCMIVIDTAGRVLELAYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQ 282
Query: 121 ITWTNQKIRK---TFVQRNMFDFKHIRPFDK--SFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W ++K+ + + + N F K++ I P VV + + +G S +F
Sbjct: 283 LEWMDEKLFRYDSSSARYNPFTLKNVNLVHSHLELIKIRSPKVVLCSSQDMETGFSRELF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVL 202
W + N +I+ T+ +++
Sbjct: 343 LDWCADQRNGVILTARPASFTLAARLV 369
>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2
OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1
Length = 784
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 15/191 (7%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWI--DKCRPDLLITESTYATTIRDSKRCRERD 58
++++ G SIVY DYN + HL + + D +P LLIT+S K+ RD
Sbjct: 161 VWKITKGTYSIVYAIDYNHRNEGHLDSLQLTSDILKPSLLITDSKGVDKTLAFKKTITRD 220
Query: 59 --FLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWER---MNLQAPIY---FAVGLT 110
++++ + GG VLIPV GR EL + +E YW + + L + ++ F+ +
Sbjct: 221 QSLFEQINRNLRDGGNVLIPVDTAGRVLELLLCIENYWSKNKSLALYSVVFLGRFSFSVC 280
Query: 111 EKATNYYKMFITWTNQKIRKTFVQRNMFDFKHIRPFD--KSFIDNPGP-MVVFATPGMLH 167
+ A + + + + K + N F FKHI+ + + P V+ + L
Sbjct: 281 QFARSQLEFMSSTASVKFEQNI--ENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLE 338
Query: 168 SGLSLIIFKKW 178
+G S +F +W
Sbjct: 339 TGFSRELFIQW 349
>sp|Q96FB5|RRNAD_HUMAN Protein RRNAD1 OS=Homo sapiens GN=RRNAD1 PE=2 SV=2
Length = 475
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 148/377 (39%), Gaps = 70/377 (18%)
Query: 659 SAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSL 718
+A + + KK +E++ + ++V +++ + ++D+G GQG+LS +AL G S+
Sbjct: 123 TAPFRKHVRPKKQHEIRRLGELVKKLSDFTGCTQVVDVGSGQGHLSRFMALGLGLMVKSI 182
Query: 719 DYNQVNTHGAAVRSKKLEDSEKESKGPFQSYAGVINKKLWMRTQNRQTSHASVEHHGKNW 778
+ +Q R+++L+ Q + K+ Q QTS HH W
Sbjct: 183 EGDQRLVE----RAQRLD----------QELLQALEKEEKRNPQVVQTSPRHSPHHVVRW 228
Query: 779 KRKSKAPVVSIKDEELVVCKDKCKQITHFVTPDSDISSILSQAY-PQDSLHNVCIMGLHT 837
V P + +L P + + GLH
Sbjct: 229 -----------------------------VDPTALCEELLLPLENPCQGRARLLLTGLHA 259
Query: 838 CGDLSGTALRLFTK-SSLQCLVQVGCCYHLLEEEFIRSPFWKDVDQSLYEHGYGFPLSEH 896
CGDLS LR F+ + L VGCCY L + G+PLS+
Sbjct: 260 CGDLSVALLRHFSCCPEVVALASVGCCYMKLSDPG------------------GYPLSQW 301
Query: 897 LRSRKFF-LGRNVRMSGTQSPERVIDLKQTQTLPL---FYRALLEKYLRSKITINDEEPK 952
+ + L +R + E + Q L YRA LE +R + P
Sbjct: 302 VAGLPGYELPYRLREGACHALEEYAERLQKAGPGLRTHCYRAALETVIR-RARPELRRPG 360
Query: 953 VVGRLATKCSNFVEYVHRAVDKLKLDLEVDDEEVTRLFNSHQREYEYLQIYYFLKTALAP 1012
V G EYV R + ++ LD ++ +H + + ++ L LAP
Sbjct: 361 VQGIPRVHELKIEEYVQRGLQRVGLDPQLPLNLAA--LQAHVAQENRVVAFFSLALLLAP 418
Query: 1013 VIEALIVLDRVLYLREQ 1029
++E LI+LDR+LYL+EQ
Sbjct: 419 LVETLILLDRLLYLQEQ 435
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,713,400
Number of Sequences: 539616
Number of extensions: 15816596
Number of successful extensions: 42725
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 42506
Number of HSP's gapped (non-prelim): 142
length of query: 1101
length of database: 191,569,459
effective HSP length: 128
effective length of query: 973
effective length of database: 122,498,611
effective search space: 119191148503
effective search space used: 119191148503
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)