Query psy9966
Match_columns 1101
No_of_seqs 543 out of 1975
Neff 6.1
Searched_HMMs 46136
Date Sat Aug 17 00:15:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1136|consensus 100.0 1.2E-74 2.6E-79 619.8 28.9 333 1-334 163-499 (501)
2 KOG2651|consensus 100.0 4.8E-75 1E-79 635.4 18.8 453 479-1069 9-472 (476)
3 KOG1137|consensus 100.0 9.1E-72 2E-76 629.3 31.0 405 1-431 166-581 (668)
4 COG1782 Predicted metal-depend 100.0 2.4E-52 5.2E-57 468.9 25.2 280 4-284 340-636 (637)
5 TIGR03675 arCOG00543 arCOG0054 100.0 2.6E-51 5.7E-56 497.8 35.7 283 1-284 329-629 (630)
6 COG1236 YSH1 Predicted exonucl 100.0 4.6E-42 1E-46 402.1 27.8 275 1-283 148-426 (427)
7 KOG1135|consensus 100.0 8.3E-30 1.8E-34 296.1 29.2 301 1-301 156-621 (764)
8 PF13679 Methyltransf_32: Meth 100.0 3.6E-29 7.9E-34 251.9 12.6 132 669-870 1-141 (141)
9 KOG1138|consensus 99.9 1.5E-26 3.2E-31 260.6 22.4 406 2-437 226-652 (653)
10 TIGR00649 MG423 conserved hypo 99.9 1.8E-24 4E-29 254.7 25.0 254 1-286 143-419 (422)
11 PF10996 Beta-Casp: Beta-Casp 99.9 1.6E-21 3.4E-26 192.0 11.4 119 83-201 1-126 (126)
12 COG0595 mRNA degradation ribon 99.7 1.2E-15 2.5E-20 182.7 23.7 256 2-289 152-432 (555)
13 PF07521 RMMBL: RNA-metabolisi 99.1 9.6E-11 2.1E-15 94.4 4.6 42 215-256 2-43 (43)
14 KOG2651|consensus 98.9 1.2E-09 2.5E-14 122.4 5.1 55 1044-1098 396-452 (476)
15 PF11718 CPSF73-100_C: Pre-mRN 98.2 1.4E-05 3E-10 86.6 11.8 107 316-436 2-114 (216)
16 KOG1361|consensus 98.1 4.4E-05 9.4E-10 90.1 15.2 216 1-256 188-413 (481)
17 PF05206 TRM13: Methyltransfer 97.7 0.00019 4.2E-09 79.8 10.4 46 827-872 97-150 (259)
18 KOG2811|consensus 97.0 0.0015 3.2E-08 74.4 7.5 41 828-868 259-305 (420)
19 PF12847 Methyltransf_18: Meth 96.7 0.0018 4E-08 61.7 4.6 42 691-732 3-45 (112)
20 TIGR00138 gidB 16S rRNA methyl 96.3 0.01 2.3E-07 62.7 7.9 40 690-729 43-83 (181)
21 PF13847 Methyltransf_31: Meth 96.3 0.0051 1.1E-07 62.6 5.0 43 690-732 4-48 (152)
22 COG2230 Cfa Cyclopropane fatty 96.2 0.0061 1.3E-07 68.5 5.6 51 683-733 66-116 (283)
23 PRK04148 hypothetical protein; 96.2 0.0084 1.8E-07 60.3 5.7 52 676-728 3-55 (134)
24 TIGR00477 tehB tellurite resis 96.1 0.0047 1E-07 65.9 4.1 39 690-729 31-69 (195)
25 PF02353 CMAS: Mycolic acid cy 95.9 0.008 1.7E-07 67.7 4.8 52 682-733 55-106 (273)
26 PRK00107 gidB 16S rRNA methylt 95.9 0.015 3.3E-07 61.9 6.4 41 690-730 46-87 (187)
27 PRK11036 putative S-adenosyl-L 95.8 0.012 2.7E-07 65.2 5.9 51 679-732 36-86 (255)
28 TIGR03587 Pse_Me-ase pseudamin 95.8 0.017 3.7E-07 62.3 6.6 55 673-730 30-85 (204)
29 PF13489 Methyltransf_23: Meth 95.8 0.013 2.7E-07 59.3 5.3 49 676-725 8-57 (161)
30 COG2227 UbiG 2-polyprenyl-3-me 95.8 0.0087 1.9E-07 65.4 4.0 40 690-730 60-99 (243)
31 TIGR02021 BchM-ChlM magnesium 95.6 0.027 5.8E-07 61.0 7.0 42 689-731 55-96 (219)
32 PLN02244 tocopherol O-methyltr 95.6 0.021 4.6E-07 66.3 6.5 42 689-730 118-159 (340)
33 smart00650 rADc Ribosomal RNA 95.5 0.018 3.8E-07 59.9 5.3 39 690-729 14-52 (169)
34 PRK11207 tellurite resistance 95.5 0.019 4.2E-07 61.3 5.7 39 690-729 31-69 (197)
35 TIGR00080 pimt protein-L-isoas 95.5 0.023 5.1E-07 61.4 6.3 44 688-731 76-121 (215)
36 PRK08287 cobalt-precorrin-6Y C 95.5 0.027 5.7E-07 59.5 6.6 41 689-729 31-72 (187)
37 PRK13942 protein-L-isoaspartat 95.5 0.024 5.1E-07 61.5 6.3 44 688-731 75-120 (212)
38 PRK14896 ksgA 16S ribosomal RN 95.5 0.022 4.9E-07 63.5 6.3 40 689-729 29-68 (258)
39 TIGR00452 methyltransferase, p 95.5 0.038 8.2E-07 63.5 8.1 82 641-727 78-159 (314)
40 PRK00274 ksgA 16S ribosomal RN 95.4 0.023 5E-07 63.9 6.1 40 689-729 42-81 (272)
41 TIGR02469 CbiT precorrin-6Y C5 95.4 0.034 7.4E-07 53.6 6.5 41 690-730 20-61 (124)
42 PRK13944 protein-L-isoaspartat 95.4 0.027 5.8E-07 60.6 6.3 42 689-730 72-115 (205)
43 COG4106 Tam Trans-aconitate me 95.4 0.014 3E-07 62.7 3.8 52 679-731 21-73 (257)
44 PRK01683 trans-aconitate 2-met 95.3 0.028 6.1E-07 62.3 6.2 41 689-729 31-72 (258)
45 PRK10258 biotin biosynthesis p 95.3 0.029 6.2E-07 62.0 6.1 40 689-729 42-81 (251)
46 PRK07402 precorrin-6B methylas 95.3 0.037 8E-07 58.9 6.7 42 689-730 40-82 (196)
47 PF08241 Methyltransf_11: Meth 95.2 0.02 4.4E-07 52.1 4.1 39 694-732 1-39 (95)
48 PRK11705 cyclopropane fatty ac 95.2 0.031 6.8E-07 66.0 6.5 59 672-731 151-209 (383)
49 PLN02396 hexaprenyldihydroxybe 95.2 0.032 6.8E-07 64.4 6.3 40 690-730 132-171 (322)
50 PRK14103 trans-aconitate 2-met 95.2 0.028 6E-07 62.4 5.7 50 679-729 20-70 (255)
51 PF07522 DRMBL: DNA repair met 95.2 0.11 2.3E-06 50.6 9.0 92 154-251 12-105 (110)
52 PRK06202 hypothetical protein; 95.1 0.029 6.3E-07 61.3 5.6 42 688-729 59-105 (232)
53 PRK15451 tRNA cmo(5)U34 methyl 95.1 0.037 7.9E-07 61.3 6.2 42 690-731 57-101 (247)
54 PTZ00098 phosphoethanolamine N 95.0 0.038 8.3E-07 61.9 6.0 51 679-730 43-93 (263)
55 TIGR00755 ksgA dimethyladenosi 95.0 0.04 8.6E-07 61.2 6.1 41 688-729 28-68 (253)
56 PRK07580 Mg-protoporphyrin IX 95.0 0.046 1E-06 59.1 6.5 41 690-731 64-104 (230)
57 PRK00312 pcm protein-L-isoaspa 94.9 0.046 9.9E-07 58.9 6.1 43 687-730 76-118 (212)
58 PRK15068 tRNA mo(5)U34 methylt 94.8 0.065 1.4E-06 61.9 7.5 37 690-726 123-159 (322)
59 PRK12335 tellurite resistance 94.8 0.03 6.6E-07 63.4 4.7 38 691-729 122-159 (287)
60 TIGR00537 hemK_rel_arch HemK-r 94.8 0.044 9.6E-07 57.4 5.6 40 690-730 20-59 (179)
61 KOG1270|consensus 94.8 0.016 3.5E-07 63.9 2.3 39 692-731 92-130 (282)
62 TIGR00740 methyltransferase, p 94.7 0.057 1.2E-06 59.3 6.5 41 690-730 54-97 (239)
63 PRK05785 hypothetical protein; 94.7 0.047 1E-06 59.8 5.6 40 690-729 52-91 (226)
64 PF05175 MTS: Methyltransferas 94.6 0.06 1.3E-06 56.2 6.1 40 689-728 31-71 (170)
65 PTZ00338 dimethyladenosine tra 94.6 0.051 1.1E-06 61.9 5.8 41 689-730 36-76 (294)
66 PRK05134 bifunctional 3-demeth 94.6 0.083 1.8E-06 57.5 7.3 51 679-730 38-88 (233)
67 TIGR03438 probable methyltrans 94.5 0.061 1.3E-06 61.5 6.4 61 671-731 44-107 (301)
68 TIGR00406 prmA ribosomal prote 94.5 0.064 1.4E-06 60.9 6.4 58 671-730 142-200 (288)
69 TIGR02081 metW methionine bios 94.4 0.046 1E-06 58.1 4.7 38 691-728 15-52 (194)
70 PRK14968 putative methyltransf 94.4 0.064 1.4E-06 55.9 5.6 41 688-729 22-62 (188)
71 PRK00377 cbiT cobalt-precorrin 94.3 0.093 2E-06 56.1 6.7 57 672-731 26-84 (198)
72 PHA03411 putative methyltransf 94.2 0.12 2.6E-06 58.1 7.7 76 640-729 29-105 (279)
73 PF03848 TehB: Tellurite resis 94.1 0.063 1.4E-06 57.4 5.0 38 690-728 31-68 (192)
74 PLN02233 ubiquinone biosynthes 94.1 0.089 1.9E-06 58.9 6.4 43 689-731 73-117 (261)
75 PRK00517 prmA ribosomal protei 94.0 0.096 2.1E-06 58.2 6.4 42 689-730 119-160 (250)
76 PRK00121 trmB tRNA (guanine-N( 94.0 0.058 1.3E-06 58.0 4.5 42 690-731 41-83 (202)
77 PRK03522 rumB 23S rRNA methylu 94.0 0.089 1.9E-06 60.5 6.3 39 690-729 174-212 (315)
78 PRK11088 rrmA 23S rRNA methylt 93.9 0.085 1.8E-06 59.3 5.8 40 690-729 86-129 (272)
79 TIGR03840 TMPT_Se_Te thiopurin 93.9 0.077 1.7E-06 57.7 5.3 37 691-728 36-72 (213)
80 PF01135 PCMT: Protein-L-isoas 93.9 0.088 1.9E-06 57.1 5.6 45 689-733 72-118 (209)
81 TIGR02752 MenG_heptapren 2-hep 93.9 0.09 2E-06 57.1 5.8 40 690-729 46-87 (231)
82 COG4123 Predicted O-methyltran 93.9 0.076 1.6E-06 58.8 5.1 51 679-729 34-85 (248)
83 smart00828 PKS_MT Methyltransf 93.9 0.061 1.3E-06 58.2 4.4 41 691-731 1-42 (224)
84 PRK13255 thiopurine S-methyltr 93.8 0.087 1.9E-06 57.5 5.3 37 691-728 39-75 (218)
85 TIGR02072 BioC biotin biosynth 93.6 0.11 2.4E-06 56.0 5.9 39 690-728 35-74 (240)
86 PLN02585 magnesium protoporphy 93.5 0.13 2.8E-06 59.3 6.4 42 690-732 145-186 (315)
87 PF07021 MetW: Methionine bios 93.4 0.1 2.3E-06 55.5 4.9 48 680-729 6-53 (193)
88 PF08242 Methyltransf_12: Meth 93.4 0.023 4.9E-07 53.3 -0.0 39 694-732 1-40 (99)
89 PLN02336 phosphoethanolamine N 93.3 0.12 2.6E-06 62.7 6.0 40 690-729 267-306 (475)
90 PRK14967 putative methyltransf 93.3 0.12 2.5E-06 56.4 5.3 56 673-729 21-76 (223)
91 PF13659 Methyltransf_26: Meth 93.3 0.11 2.3E-06 50.0 4.5 41 691-731 2-42 (117)
92 PHA03412 putative methyltransf 93.2 0.19 4E-06 55.5 6.7 68 654-729 22-93 (241)
93 TIGR03533 L3_gln_methyl protei 93.2 0.16 3.5E-06 57.6 6.5 41 690-730 122-163 (284)
94 PRK11805 N5-glutamine S-adenos 93.2 0.15 3.3E-06 58.5 6.4 41 691-731 135-176 (307)
95 PRK08317 hypothetical protein; 93.1 0.18 4E-06 54.2 6.5 42 688-729 18-61 (241)
96 TIGR03704 PrmC_rel_meth putati 93.1 0.16 3.6E-06 56.5 6.2 57 673-729 69-127 (251)
97 TIGR00091 tRNA (guanine-N(7)-) 93.0 0.1 2.2E-06 55.7 4.3 41 690-730 17-58 (194)
98 cd02440 AdoMet_MTases S-adenos 93.0 0.098 2.1E-06 47.2 3.5 38 692-729 1-38 (107)
99 PRK13943 protein-L-isoaspartat 92.9 0.18 4E-06 58.2 6.4 41 690-730 81-123 (322)
100 PRK09328 N5-glutamine S-adenos 92.8 0.16 3.4E-06 56.7 5.5 42 689-730 108-150 (275)
101 COG2518 Pcm Protein-L-isoaspar 92.7 0.19 4.2E-06 54.3 5.8 64 664-732 51-114 (209)
102 PF13649 Methyltransf_25: Meth 92.6 0.12 2.5E-06 48.9 3.7 40 693-732 1-44 (101)
103 TIGR01983 UbiG ubiquinone bios 92.6 0.22 4.7E-06 53.8 6.2 40 689-729 45-84 (224)
104 PRK00216 ubiE ubiquinone/menaq 92.5 0.23 4.9E-06 53.7 6.3 40 690-729 52-93 (239)
105 TIGR00478 tly hemolysin TlyA f 92.5 0.19 4.1E-06 55.3 5.5 37 689-725 75-111 (228)
106 COG2263 Predicted RNA methylas 92.4 0.38 8.3E-06 51.1 7.4 79 642-730 5-86 (198)
107 PF01209 Ubie_methyltran: ubiE 92.4 0.19 4.1E-06 55.4 5.5 45 689-733 47-93 (233)
108 PF00398 RrnaAD: Ribosomal RNA 92.4 0.17 3.8E-06 56.5 5.3 40 685-725 26-65 (262)
109 PRK06922 hypothetical protein; 92.4 0.19 4.2E-06 62.5 6.0 41 690-730 419-460 (677)
110 TIGR00536 hemK_fam HemK family 92.3 0.23 4.9E-06 56.3 6.1 40 691-730 116-156 (284)
111 COG0030 KsgA Dimethyladenosine 92.2 0.23 5E-06 55.5 5.9 35 690-725 31-65 (259)
112 PRK09489 rsmC 16S ribosomal RN 92.2 0.21 4.7E-06 58.1 5.9 38 692-729 199-237 (342)
113 TIGR03534 RF_mod_PrmC protein- 92.2 0.24 5.2E-06 54.2 6.1 41 690-730 88-129 (251)
114 PLN02781 Probable caffeoyl-CoA 92.2 0.2 4.4E-06 55.2 5.4 52 678-729 57-110 (234)
115 TIGR02650 RNase_Z_T_toga ribon 91.9 0.52 1.1E-05 53.2 8.3 93 6-108 179-274 (277)
116 PRK10909 rsmD 16S rRNA m(2)G96 91.8 0.26 5.7E-06 53.1 5.6 40 690-729 54-93 (199)
117 PRK13168 rumA 23S rRNA m(5)U19 91.8 0.31 6.8E-06 58.7 6.8 52 677-729 285-336 (443)
118 PRK14966 unknown domain/N5-glu 91.8 0.26 5.6E-06 58.6 5.9 40 691-730 253-293 (423)
119 PF08123 DOT1: Histone methyla 91.7 0.25 5.4E-06 53.5 5.3 60 676-736 30-90 (205)
120 PLN02336 phosphoethanolamine N 91.7 0.19 4.1E-06 61.0 4.9 40 690-730 38-77 (475)
121 PRK04266 fibrillarin; Provisio 91.6 0.29 6.3E-06 53.7 5.8 48 679-726 60-110 (226)
122 PRK04457 spermidine synthase; 91.5 0.32 6.8E-06 54.6 6.1 45 687-731 64-109 (262)
123 PRK15001 SAM-dependent 23S rib 91.4 0.28 6E-06 57.9 5.6 49 680-729 220-269 (378)
124 TIGR00479 rumA 23S rRNA (uraci 91.3 0.3 6.5E-06 58.6 6.0 41 688-729 291-331 (431)
125 TIGR02085 meth_trns_rumB 23S r 91.3 0.34 7.3E-06 57.2 6.3 39 690-729 234-272 (374)
126 TIGR01934 MenG_MenH_UbiE ubiqu 91.1 0.39 8.4E-06 51.3 6.0 41 689-729 39-81 (223)
127 PRK01544 bifunctional N5-gluta 91.0 0.34 7.4E-06 59.4 6.2 41 691-731 140-181 (506)
128 COG2242 CobL Precorrin-6B meth 91.0 0.54 1.2E-05 50.0 6.7 50 671-723 19-69 (187)
129 TIGR00438 rrmJ cell division p 91.0 0.37 8.1E-06 50.9 5.7 42 682-723 25-68 (188)
130 PF06325 PrmA: Ribosomal prote 90.7 0.39 8.6E-06 54.8 5.9 56 671-729 144-201 (295)
131 TIGR02716 C20_methyl_CrtF C-20 90.5 0.43 9.3E-06 54.5 6.1 49 679-728 139-188 (306)
132 PRK10901 16S rRNA methyltransf 90.5 0.4 8.8E-06 57.5 6.0 53 679-731 234-287 (427)
133 PRK14121 tRNA (guanine-N(7)-)- 90.4 0.4 8.7E-06 56.6 5.7 53 679-732 113-166 (390)
134 COG2890 HemK Methylase of poly 90.3 0.41 8.9E-06 54.3 5.6 38 692-729 113-151 (280)
135 PF05724 TPMT: Thiopurine S-me 90.2 0.34 7.3E-06 53.0 4.6 40 690-730 38-77 (218)
136 TIGR01444 fkbM_fam methyltrans 90.0 0.32 7E-06 48.6 3.9 37 693-729 2-39 (143)
137 TIGR01177 conserved hypothetic 89.7 0.53 1.1E-05 54.5 6.0 53 677-730 170-222 (329)
138 COG2813 RsmC 16S RNA G1207 met 89.7 0.35 7.7E-06 54.9 4.4 48 680-728 150-198 (300)
139 TIGR02143 trmA_only tRNA (urac 89.7 0.52 1.1E-05 55.2 5.9 37 692-729 200-236 (353)
140 PF05401 NodS: Nodulation prot 89.7 0.56 1.2E-05 50.3 5.6 62 671-734 25-87 (201)
141 COG2264 PrmA Ribosomal protein 89.2 0.51 1.1E-05 53.8 5.1 42 689-730 162-203 (300)
142 PF08003 Methyltransf_9: Prote 89.1 0.7 1.5E-05 52.7 6.1 80 641-727 72-153 (315)
143 PRK13256 thiopurine S-methyltr 89.1 0.57 1.2E-05 51.5 5.3 39 691-730 45-83 (226)
144 PRK14902 16S rRNA methyltransf 89.0 0.58 1.2E-05 56.5 5.8 53 678-730 239-293 (444)
145 PRK14904 16S rRNA methyltransf 89.0 0.6 1.3E-05 56.3 5.9 53 680-732 241-295 (445)
146 KOG1541|consensus 89.0 0.42 9.2E-06 51.8 4.0 40 690-730 51-90 (270)
147 PF02390 Methyltransf_4: Putat 88.7 0.45 9.7E-06 51.1 4.1 41 692-732 20-61 (195)
148 PRK11727 23S rRNA mA1618 methy 88.7 0.59 1.3E-05 54.0 5.3 40 690-729 115-155 (321)
149 PF01596 Methyltransf_3: O-met 88.6 0.65 1.4E-05 50.3 5.3 52 679-730 35-88 (205)
150 PRK11873 arsM arsenite S-adeno 88.5 0.49 1.1E-05 52.9 4.5 42 689-730 77-120 (272)
151 TIGR00563 rsmB ribosomal RNA s 88.3 0.76 1.7E-05 55.1 6.1 53 678-730 227-280 (426)
152 TIGR00446 nop2p NOL1/NOP2/sun 88.3 0.78 1.7E-05 51.5 5.8 51 680-730 62-114 (264)
153 PRK14903 16S rRNA methyltransf 88.1 0.78 1.7E-05 55.2 6.1 53 678-730 226-280 (431)
154 TIGR00095 RNA methyltransferas 87.6 1.1 2.4E-05 47.8 6.2 39 690-728 50-88 (189)
155 PLN02490 MPBQ/MSBQ methyltrans 87.6 0.85 1.8E-05 53.2 5.7 40 690-729 114-154 (340)
156 PF00891 Methyltransf_2: O-met 87.5 0.98 2.1E-05 49.6 6.0 45 685-730 96-141 (241)
157 KOG1271|consensus 87.5 0.65 1.4E-05 49.1 4.1 40 690-729 68-108 (227)
158 COG2226 UbiE Methylase involve 87.5 0.86 1.9E-05 50.5 5.4 54 680-734 43-97 (238)
159 PRK05031 tRNA (uracil-5-)-meth 86.5 1.1 2.5E-05 52.5 6.1 38 691-729 208-245 (362)
160 PRK11188 rrmJ 23S rRNA methylt 86.5 1.2 2.6E-05 48.3 5.8 33 690-722 52-86 (209)
161 KOG3420|consensus 86.3 1.8 3.9E-05 44.3 6.4 87 639-728 1-87 (185)
162 PRK14901 16S rRNA methyltransf 86.1 1.1 2.3E-05 54.0 5.7 54 677-730 240-295 (434)
163 TIGR03307 PhnP phosphonate met 86.0 1 2.2E-05 49.4 5.1 45 1-47 137-181 (238)
164 PF12706 Lactamase_B_2: Beta-l 85.9 0.45 9.8E-06 49.6 2.2 38 2-47 123-160 (194)
165 PRK00050 16S rRNA m(4)C1402 me 85.9 1.1 2.4E-05 51.2 5.3 53 678-731 9-63 (296)
166 PRK00811 spermidine synthase; 85.7 0.99 2.2E-05 51.2 4.9 43 688-730 75-118 (283)
167 PLN02476 O-methyltransferase 84.9 1.5 3.2E-05 49.7 5.8 51 679-729 108-160 (278)
168 PLN02672 methionine S-methyltr 84.6 1.3 2.8E-05 58.6 5.8 58 672-729 100-159 (1082)
169 PF05958 tRNA_U5-meth_tr: tRNA 84.4 1.5 3.3E-05 51.4 5.8 55 673-729 181-235 (352)
170 COG4076 Predicted RNA methylas 84.2 1.3 2.9E-05 46.9 4.5 51 673-725 17-67 (252)
171 PLN03075 nicotianamine synthas 83.7 1.7 3.6E-05 49.7 5.5 50 680-730 115-167 (296)
172 PRK11244 phnP carbon-phosphoru 81.3 1.9 4E-05 47.8 4.7 45 1-47 147-191 (250)
173 KOG2899|consensus 81.0 1.4 3.1E-05 48.5 3.5 45 690-734 59-104 (288)
174 PF03291 Pox_MCEL: mRNA cappin 81.0 2 4.4E-05 49.9 5.0 46 689-735 62-108 (331)
175 smart00138 MeTrc Methyltransfe 80.8 2.8 6E-05 47.2 5.9 90 639-730 41-150 (264)
176 COG4122 Predicted O-methyltran 80.8 2.7 5.9E-05 46.1 5.6 51 679-729 49-101 (219)
177 KOG1499|consensus 80.4 1.5 3.3E-05 50.7 3.6 34 690-723 61-94 (346)
178 PRK00685 metal-dependent hydro 80.2 3.6 7.9E-05 44.5 6.4 56 228-284 168-228 (228)
179 TIGR00417 speE spermidine synt 80.0 2.4 5.1E-05 47.8 5.1 43 688-730 71-114 (270)
180 KOG0820|consensus 79.0 3.9 8.4E-05 46.0 6.0 63 661-725 28-93 (315)
181 KOG1661|consensus 78.8 0.99 2.1E-05 48.7 1.4 38 692-729 85-125 (237)
182 KOG2904|consensus 78.4 5.5 0.00012 44.9 6.9 39 690-728 149-188 (328)
183 PLN02366 spermidine synthase 77.9 2.9 6.4E-05 48.1 5.0 45 687-731 89-134 (308)
184 PRK15128 23S rRNA m(5)C1962 me 77.8 2.9 6.3E-05 49.9 5.1 40 690-729 221-260 (396)
185 KOG1500|consensus 76.8 2.3 5E-05 48.6 3.6 34 690-723 178-211 (517)
186 PRK04338 N(2),N(2)-dimethylgua 76.8 3.8 8.3E-05 48.6 5.7 67 662-729 30-98 (382)
187 PLN02589 caffeoyl-CoA O-methyl 76.0 4.2 9.1E-05 45.4 5.4 51 679-729 69-121 (247)
188 KOG2187|consensus 75.8 3.7 8.1E-05 49.7 5.1 56 673-729 367-422 (534)
189 PF10294 Methyltransf_16: Puta 75.2 6.2 0.00013 41.4 6.2 47 676-722 26-79 (173)
190 PRK11783 rlmL 23S rRNA m(2)G24 75.1 3.3 7.2E-05 53.0 4.9 47 680-729 532-578 (702)
191 PRK03612 spermidine synthase; 74.8 4.8 0.0001 49.7 6.0 45 686-730 294-339 (521)
192 COG2519 GCD14 tRNA(1-methylade 74.8 4.8 0.0001 44.9 5.3 51 679-729 84-136 (256)
193 PF02475 Met_10: Met-10+ like- 73.7 3.4 7.4E-05 44.7 3.9 58 665-728 83-141 (200)
194 PF05185 PRMT5: PRMT5 arginine 72.4 6.9 0.00015 47.4 6.4 36 690-725 187-227 (448)
195 PTZ00146 fibrillarin; Provisio 72.1 5 0.00011 45.9 4.8 34 690-723 133-168 (293)
196 PRK01581 speE spermidine synth 72.1 4.6 0.0001 47.5 4.6 45 686-730 147-192 (374)
197 PRK00055 ribonuclease Z; Revie 71.2 1.9 4.2E-05 47.6 1.3 41 2-47 160-200 (270)
198 PF09445 Methyltransf_15: RNA 69.8 4.1 8.9E-05 42.7 3.3 38 691-729 1-38 (163)
199 KOG3191|consensus 68.7 6 0.00013 42.1 4.1 36 690-725 44-81 (209)
200 KOG3010|consensus 68.4 4.2 9.1E-05 45.0 3.1 46 679-725 22-68 (261)
201 COG4976 Predicted methyltransf 67.5 2.6 5.6E-05 46.2 1.2 40 690-730 126-165 (287)
202 PRK00055 ribonuclease Z; Revie 66.8 14 0.0003 40.9 6.9 60 227-287 207-269 (270)
203 PF08704 GCD14: tRNA methyltra 65.5 11 0.00023 42.3 5.6 50 680-729 31-82 (247)
204 COG0220 Predicted S-adenosylme 64.3 6.9 0.00015 43.2 3.8 42 691-732 50-92 (227)
205 COG1234 ElaC Metal-dependent h 63.4 10 0.00022 43.4 5.1 94 7-107 189-284 (292)
206 TIGR02108 PQQ_syn_pqqB coenzym 61.4 10 0.00022 43.5 4.7 39 2-44 182-222 (302)
207 KOG2862|consensus 60.2 39 0.00084 38.9 8.7 81 158-255 71-153 (385)
208 PF02527 GidB: rRNA small subu 58.2 17 0.00037 38.8 5.4 32 692-723 51-83 (184)
209 PF01728 FtsJ: FtsJ-like methy 57.1 11 0.00023 39.5 3.6 35 689-723 23-59 (181)
210 PF12147 Methyltransf_20: Puta 56.6 18 0.0004 41.3 5.4 72 661-732 107-181 (311)
211 COG2265 TrmA SAM-dependent met 56.6 17 0.00036 44.0 5.5 54 675-729 279-332 (432)
212 TIGR03439 methyl_EasF probable 55.9 23 0.0005 41.1 6.3 60 671-730 57-122 (319)
213 PF05148 Methyltransf_8: Hypot 55.7 16 0.00034 39.9 4.6 42 680-723 63-104 (219)
214 PF02384 N6_Mtase: N-6 DNA Met 53.8 25 0.00054 40.1 6.2 62 662-729 25-94 (311)
215 PF02636 Methyltransf_28: Puta 51.7 29 0.00062 38.6 6.1 36 690-725 19-63 (252)
216 TIGR02649 true_RNase_BN ribonu 50.6 8.7 0.00019 43.9 1.8 35 7-46 201-235 (303)
217 COG0357 GidB Predicted S-adeno 49.8 28 0.0006 38.2 5.4 34 690-723 68-102 (215)
218 PLN02823 spermine synthase 49.3 21 0.00046 41.7 4.7 42 689-730 103-145 (336)
219 COG2333 ComEC Predicted hydrol 49.0 23 0.00049 40.7 4.8 78 1-93 175-259 (293)
220 PRK01544 bifunctional N5-gluta 49.0 16 0.00034 45.1 3.8 39 690-728 348-387 (506)
221 TIGR02651 RNase_Z ribonuclease 48.3 10 0.00023 42.8 2.0 35 8-47 200-234 (299)
222 PRK11760 putative 23S rRNA C24 47.8 19 0.00041 42.1 3.9 31 690-721 212-242 (357)
223 PF07757 AdoMet_MTase: Predict 47.7 32 0.0007 33.8 4.8 52 669-721 34-89 (112)
224 PF04816 DUF633: Family of unk 47.3 16 0.00036 39.6 3.2 38 693-730 1-39 (205)
225 COG2248 Predicted hydrolase (m 46.9 42 0.00092 37.6 6.1 95 1-98 169-269 (304)
226 PF01795 Methyltransf_5: MraW 46.8 24 0.00051 40.8 4.5 48 679-728 11-60 (310)
227 PF03141 Methyltransf_29: Puta 45.5 24 0.00051 43.1 4.3 48 673-721 101-148 (506)
228 KOG1540|consensus 44.2 27 0.00059 39.2 4.2 54 680-734 92-152 (296)
229 PF01170 UPF0020: Putative RNA 41.9 42 0.00092 35.5 5.2 55 676-730 15-79 (179)
230 PRK02126 ribonuclease Z; Provi 41.6 14 0.00031 43.0 1.8 39 7-47 241-280 (334)
231 PRK14532 adenylate kinase; Pro 41.5 16 0.00034 38.4 2.0 23 696-718 9-31 (188)
232 KOG3816|consensus 41.5 35 0.00076 39.9 4.7 63 396-468 347-418 (526)
233 PRK11244 phnP carbon-phosphoru 40.7 39 0.00086 37.3 5.0 55 228-284 196-250 (250)
234 PF04672 Methyltransf_19: S-ad 40.4 35 0.00076 38.6 4.5 52 677-729 56-112 (267)
235 PRK05184 pyrroloquinoline quin 39.5 18 0.00039 41.5 2.2 39 2-44 182-222 (302)
236 COG1565 Uncharacterized conser 39.3 48 0.001 39.0 5.4 35 691-725 79-122 (370)
237 KOG1975|consensus 39.1 33 0.0007 39.8 4.0 53 679-735 109-163 (389)
238 PRK04286 hypothetical protein; 38.5 46 0.001 38.1 5.2 39 2-42 171-210 (298)
239 PRK03839 putative kinase; Prov 38.4 17 0.00037 37.9 1.6 23 697-719 10-32 (180)
240 PRK10742 putative methyltransf 38.4 44 0.00095 37.5 4.8 31 692-723 91-121 (250)
241 PTZ00088 adenylate kinase 1; P 37.4 18 0.00038 40.0 1.6 23 697-719 16-38 (229)
242 TIGR01359 UMP_CMP_kin_fam UMP- 36.8 20 0.00044 37.3 1.8 22 697-718 9-30 (183)
243 PF12706 Lactamase_B_2: Beta-l 36.4 32 0.0007 35.7 3.3 26 227-252 168-193 (194)
244 COG0500 SmtA SAM-dependent met 36.4 39 0.00085 31.5 3.6 32 693-725 52-85 (257)
245 COG2384 Predicted SAM-dependen 34.6 70 0.0015 35.3 5.4 37 692-728 19-56 (226)
246 PRK11524 putative methyltransf 34.0 68 0.0015 36.4 5.7 56 675-733 196-251 (284)
247 cd01428 ADK Adenylate kinase ( 34.0 24 0.00052 36.9 1.9 24 696-719 8-31 (194)
248 PF03602 Cons_hypoth95: Conser 33.8 50 0.0011 35.2 4.2 37 689-725 42-78 (183)
249 COG3897 Predicted methyltransf 33.5 26 0.00056 37.9 1.9 56 677-733 67-122 (218)
250 TIGR03307 PhnP phosphonate met 33.4 53 0.0012 35.9 4.6 52 228-281 186-237 (238)
251 PF01555 N6_N4_Mtase: DNA meth 33.4 68 0.0015 34.0 5.3 50 677-729 181-230 (231)
252 PRK11188 rrmJ 23S rRNA methylt 33.4 85 0.0018 34.0 6.0 64 32-95 115-183 (209)
253 PF03686 UPF0146: Uncharacteri 32.9 73 0.0016 32.2 4.9 45 675-723 2-47 (127)
254 TIGR00438 rrmJ cell division p 32.6 1.2E+02 0.0026 31.9 6.9 64 31-94 95-163 (188)
255 PRK14531 adenylate kinase; Pro 32.5 24 0.00053 37.1 1.6 23 696-718 11-33 (183)
256 PF09243 Rsm22: Mitochondrial 32.5 60 0.0013 36.8 4.9 41 689-729 33-75 (274)
257 KOG4300|consensus 32.2 52 0.0011 36.0 4.0 58 674-732 62-119 (252)
258 PF12242 Eno-Rase_NADH_b: NAD( 31.9 1.3E+02 0.0028 27.9 5.8 50 672-721 21-73 (78)
259 PRK00685 metal-dependent hydro 31.5 70 0.0015 34.5 5.0 37 2-42 128-165 (228)
260 TIGR02649 true_RNase_BN ribonu 31.4 91 0.002 35.5 6.2 56 228-284 244-303 (303)
261 PRK11933 yebU rRNA (cytosine-C 31.3 85 0.0018 38.5 6.1 50 679-728 101-154 (470)
262 COG2520 Predicted methyltransf 31.3 52 0.0011 38.6 4.2 65 664-736 169-234 (341)
263 COG1255 Uncharacterized protei 31.1 58 0.0013 32.4 3.7 42 678-723 5-47 (129)
264 PRK02113 putative hydrolase; P 30.8 94 0.002 34.2 6.0 56 227-284 197-252 (252)
265 TIGR01351 adk adenylate kinase 30.8 27 0.00059 37.5 1.7 23 696-718 8-30 (210)
266 COG0293 FtsJ 23S rRNA methylas 30.1 56 0.0012 35.6 3.9 34 690-723 46-81 (205)
267 PRK06217 hypothetical protein; 29.8 32 0.00068 36.2 1.9 24 696-719 10-33 (183)
268 PF02844 GARS_N: Phosphoribosy 29.7 2.6E+02 0.0056 27.1 7.9 47 229-277 47-93 (100)
269 PF05891 Methyltransf_PK: AdoM 29.5 51 0.0011 36.2 3.5 44 689-732 55-98 (218)
270 COG3963 Phospholipid N-methylt 29.5 1E+02 0.0022 32.8 5.4 41 687-727 46-88 (194)
271 PF07091 FmrO: Ribosomal RNA m 29.4 58 0.0013 36.6 3.9 48 679-726 94-143 (251)
272 TIGR02651 RNase_Z ribonuclease 28.2 1.2E+02 0.0025 34.3 6.3 56 228-284 242-299 (299)
273 PF11599 AviRa: RRNA methyltra 27.8 84 0.0018 34.6 4.6 41 689-729 51-94 (246)
274 PF03721 UDPG_MGDP_dh_N: UDP-g 27.5 29 0.00063 37.0 1.2 27 699-725 7-36 (185)
275 COG4029 Uncharacterized protei 27.3 2.8E+02 0.006 27.9 7.6 55 225-279 11-72 (142)
276 TIGR02987 met_A_Alw26 type II 27.3 62 0.0013 40.0 4.1 42 690-731 32-82 (524)
277 PF00406 ADK: Adenylate kinase 27.1 37 0.00081 34.3 1.8 22 697-718 6-27 (151)
278 PRK14528 adenylate kinase; Pro 27.0 34 0.00073 36.3 1.6 23 696-718 10-32 (186)
279 PF13207 AAA_17: AAA domain; P 27.0 38 0.00082 32.5 1.8 24 697-720 9-32 (121)
280 COG0399 WecE Predicted pyridox 26.3 1.4E+02 0.0029 35.7 6.5 89 171-273 61-152 (374)
281 PF01564 Spermine_synth: Sperm 26.2 1.2E+02 0.0026 33.9 5.7 43 689-731 76-119 (246)
282 TIGR00537 hemK_rel_arch HemK-r 26.2 1.4E+02 0.003 31.1 6.0 60 34-93 82-156 (179)
283 TIGR03018 pepcterm_TyrKin exop 26.0 1.7E+02 0.0036 31.4 6.7 55 670-724 11-77 (207)
284 PRK02113 putative hydrolase; P 25.8 50 0.0011 36.4 2.7 33 9-45 162-194 (252)
285 PHA01634 hypothetical protein 25.7 77 0.0017 32.2 3.6 36 690-725 29-64 (156)
286 KOG2940|consensus 25.1 73 0.0016 35.3 3.6 34 691-724 74-107 (325)
287 PRK11539 ComEC family competen 24.5 1.1E+02 0.0023 39.9 5.7 78 2-93 625-709 (755)
288 KOG1663|consensus 24.3 1.3E+02 0.0029 33.4 5.4 50 680-729 64-115 (237)
289 PF01189 Nol1_Nop2_Fmu: NOL1/N 24.0 1.5E+02 0.0031 33.9 6.0 48 679-726 75-124 (283)
290 PF00753 Lactamase_B: Metallo- 23.8 1.7E+02 0.0036 29.3 6.0 63 2-77 131-193 (194)
291 KOG4058|consensus 23.7 54 0.0012 34.0 2.1 37 691-728 74-111 (199)
292 PF05050 Methyltransf_21: Meth 23.3 65 0.0014 32.4 2.8 34 695-728 1-39 (167)
293 COG0144 Sun tRNA and rRNA cyto 23.3 1.3E+02 0.0028 35.5 5.6 47 678-724 145-194 (355)
294 PRK13699 putative methylase; P 23.2 1.6E+02 0.0034 32.6 5.9 56 676-734 152-207 (227)
295 PRK14530 adenylate kinase; Pro 23.1 48 0.001 35.7 1.9 23 696-718 12-34 (215)
296 PF05971 Methyltransf_10: Prot 23.1 1E+02 0.0022 35.6 4.5 39 691-729 104-143 (299)
297 PF13483 Lactamase_B_3: Beta-l 22.8 95 0.002 31.8 3.9 31 222-252 131-163 (163)
298 COG0742 N6-adenine-specific me 22.0 1.5E+02 0.0033 32.0 5.2 44 680-723 33-77 (187)
299 PRK08118 topology modulation p 21.9 47 0.001 34.6 1.5 25 696-720 10-34 (167)
300 TIGR00308 TRM1 tRNA(guanine-26 21.7 1.2E+02 0.0026 36.2 4.8 37 692-728 47-85 (374)
301 COG1064 AdhP Zn-dependent alco 21.4 67 0.0014 37.7 2.7 32 693-725 172-203 (339)
302 KOG1501|consensus 20.7 86 0.0019 37.8 3.3 40 690-729 67-106 (636)
303 cd02440 AdoMet_MTases S-adenos 20.6 1.9E+02 0.0041 25.3 5.1 40 32-76 64-103 (107)
304 TIGR02370 pyl_corrinoid methyl 20.1 7.2E+02 0.016 26.7 10.1 177 56-277 11-193 (197)
No 1
>KOG1136|consensus
Probab=100.00 E-value=1.2e-74 Score=619.83 Aligned_cols=333 Identities=64% Similarity=1.120 Sum_probs=310.5
Q ss_pred CEEEEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhCCCeEEEeecch
Q psy9966 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFAL 80 (1101)
Q Consensus 1 Mf~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl~~GG~VLIPvFAl 80 (1101)
||+|..|+.+|+||||||+++||||++|++.+.+||+||+|||||++.++++..||++|++.|++++.+||+||||+|||
T Consensus 163 Mf~ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGkvlIPvFAL 242 (501)
T KOG1136|consen 163 MFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPVFAL 242 (501)
T ss_pred EEEEEecceeEEEecCccCCcccccchhhhccccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCeEEEEeeec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCccEEEeChHHHHHHHHHHHhHhhhhHHHHHhhhhcCCCcCCCccccCccccCCCCCeEEE
Q psy9966 81 GRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVF 160 (1101)
Q Consensus 81 GRaQELl~iL~~~w~~~~~~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f~~~npF~fk~i~~~~~~~~~~~gp~VVi 160 (1101)
||||||+.+|+.||+++++++|||+.++++.+++.+|+.++.|.|++++++|..+|+|+|+|++++++...+.+||+|+|
T Consensus 243 GRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~rNmfdfkhiKpfd~~~~~~pGp~VlF 322 (501)
T KOG1136|consen 243 GRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVERNMFDFKHIKPFDRSYIEAPGPMVLF 322 (501)
T ss_pred chHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhccCCccccccCChhhhhhhcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCchHHHHHHHhCCCCCCeEEEecccCCCcchhhhhcCcceEEecCCeeEEEeeEEEEEecccCCCHHHHHHHH
Q psy9966 161 ATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240 (1101)
Q Consensus 161 aspGmL~~G~s~~~~~~w~~d~~N~VI~tGy~~~GT~g~~Ll~g~k~i~l~~g~~i~v~~~V~~i~fSaHAD~~~l~~~I 240 (1101)
||||||.+|.|++.|++||+||.|+||++|||+.||.|.++++|++++++. |+.+.+++.|++++||+|||..+|+++|
T Consensus 323 atPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~GTvG~kvl~G~~kvei~-~~~~eirl~V~~maFSaHaDAkGIm~li 401 (501)
T KOG1136|consen 323 ATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAGTVGHKVLNGATKVEIY-GTKVEIRLKVEYMAFSAHADAKGIMQLI 401 (501)
T ss_pred cCCcccccccchHHHHhhCCCccceEeecCceeccchhhhhhCCccEEEEe-eeEEEEEEEEEEeeeccccCchhHHHHH
Confidence 999999999999999999999999999999999999999999999999998 7899999999999999999999999999
Q ss_pred HHhCCCEEEEecCChhHHHHHHHHHHHHcCCceeecCCCCEEEEecCceeeEecchhhHHHHHh----hcCCCCCCCCCc
Q psy9966 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLKEEAV----KYNSEPPNPLKE 316 (1101)
Q Consensus 241 ~~l~Pk~VILVHGe~~~m~~Lk~~L~~e~gi~v~~P~nGe~v~l~~~~~~~v~~~~~ll~~~~~----~~~~~~p~~~~~ 316 (1101)
+.+.|+||++||||..+|..|+.++.+++++++|+|.|||++.|+..+.+.+.++.+.+....+ .-+...+.+...
T Consensus 402 ~~csPknVmlVHGE~~kM~~Lk~ki~~e~~ip~~mPaNGetv~i~s~~~i~~ri~~~~~~~~~k~~~k~s~~qlr~~~~r 481 (501)
T KOG1136|consen 402 KQCSPKNVMLVHGEKSKMKFLKEKIESEFDIPTFMPANGETVVISSTTYIKARIPDEFLVSLSKPNLKFSSTQLRVTDHR 481 (501)
T ss_pred HhcCcceEEEEeccchhhHHHHHhhHhhcCCceeeCCCCCEEEecccceeeecCcHHHHHHhcCcccccccccCCCCccc
Confidence 9999999999999999999999999999999999999999999999988888888777643211 101123344444
Q ss_pred cceeEEEEeeCCceeeec
Q psy9966 317 RQIHGVLVIKDSSISLMD 334 (1101)
Q Consensus 317 ~~~~G~Lv~~d~~~~l~~ 334 (1101)
....++++++|++.++++
T Consensus 482 ~~~g~~v~~kd~~~~i~~ 499 (501)
T KOG1136|consen 482 TADGVLVIEKDKKAKIVH 499 (501)
T ss_pred ccCceEEEEecchhhhcc
Confidence 555667777888887764
No 2
>KOG2651|consensus
Probab=100.00 E-value=4.8e-75 Score=635.36 Aligned_cols=453 Identities=25% Similarity=0.369 Sum_probs=323.6
Q ss_pred cccHHHHHHHHHHHHHhhccccccccccchhhchhhhhhccchHHHHHHhc-CCCCchhhHHHHHhhccCCCCcCchHHH
Q psy9966 479 KETMELIKNTIDEMIEFITPNIACVNTHTVHFMVEKLWETTIPKAILSQVN-NSPSFDSLLEEFWKSRQDNHVETNSELV 557 (1101)
Q Consensus 479 ~~~~~~~~~~~~~~~~fl~~~~~~~n~h~v~f~t~~~w~~~vp~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1101)
+...++++...+ +++||++|.+|+|||+|||||++.|+. +|++-+++|. .++.. .
T Consensus 9 ~~~~~tl~~~~~-l~~~l~~y~~IlNAh~iefftds~Wd~-l~~Ew~e~l~~ek~e~-~--------------------- 64 (476)
T KOG2651|consen 9 LSHEGTLQLAVN-LTRVLALYRSILNAHIIEFFTDSLWDT-LPCEWQEALDGEKPEQ-L--------------------- 64 (476)
T ss_pred CCccHHHHHHHH-HHHHHHHHHHHHhhhHHHHhhhhhhhh-CCHHHHHHHccCCHHH-h---------------------
Confidence 345678888888 999999999999999999999999999 6666666664 23211 0
Q ss_pred HHHHHhhhhhhhcccCCCccchHHHHHHHHHHhhhcccchhhhHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCccccCCC
Q psy9966 558 KFFQAADKFRLTSLMNGESIITVDELFSKLQARKCGQVVESAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGS 637 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1101)
..+-++..+.+. +.+++|+.-..+.+ ++.++.+.+++++| |+
T Consensus 65 -----------~~~ps~~~g~~d---~~~~~a~lk~fl~~---lks~a~~~~~~r~q---------------------~i 106 (476)
T KOG2651|consen 65 -----------ATMPSGMPGEGD---VVRYRAVLKLFLLA---LKSTACALAFTRMQ---------------------GI 106 (476)
T ss_pred -----------hhcccCCCCCcc---hhhhhhhHHHHHHH---HHHHhhhHHHHhcc---------------------cc
Confidence 001122233332 44555544433332 45566666666633 88
Q ss_pred ccchHHHHHHHhhhccCccccchhhccCCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEE
Q psy9966 638 TITVDELFSKLQARKCGLVVESAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLS 717 (1101)
Q Consensus 638 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~ 717 (1101)
|||.|.+....++++-... ......+||+|||++|+++|+++.+.+|+.++||+|+|+|||||+||++||+.|+|
T Consensus 107 ~t~~e~l~~~~~~sq~~~l-----~rkh~~~k~qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~a 181 (476)
T KOG2651|consen 107 QTPSEFLENPSQSSQLTAL-----FRKHVRPKKQHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKA 181 (476)
T ss_pred cCchhhhcchhhhhhhhhh-----hhhcccHHHHHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEE
Confidence 9999999999988876443 44456789999999999999999999999999999999999999999999999999
Q ss_pred EeCCccccchHHHHhhhhh-hhhhhccCCCccchhhhhhhhhhhhhccccccccccccccccccccCCCccccccchhhh
Q psy9966 718 LDYNQVNTHGAAVRSKKLE-DSEKESKGPFQSYAGVINKKLWMRTQNRQTSHASVEHHGKNWKRKSKAPVVSIKDEELVV 796 (1101)
Q Consensus 718 IE~~~~~~~gA~~r~~kl~-~~~k~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1101)
||+++..++.|.+.++++. +..|+ +.+|... . .+.|++..
T Consensus 182 Iegsq~~~~ra~rLdkhl~l~maK~---------gk~n~~~---~--------------------~ksp~Hlp------- 222 (476)
T KOG2651|consen 182 IEGSQRLVERAQRLDKHLLLAMAKE---------GKRNPQV---V--------------------QKSPRHLP------- 222 (476)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHh---------cccCchh---h--------------------hcCCCCCC-------
Confidence 9999655555554444432 11111 1111110 0 01111000
Q ss_pred cccccccccccccCCCchhhh-hhhcCCCCCCCceEEEEEecCcchhHHHHHHHHh-cCCceEEEecccccchhhhhhcC
Q psy9966 797 CKDKCKQITHFVTPDSDISSI-LSQAYPQDSLHNVCIMGLHTCGDLSGTALRLFTK-SSLQCLVQVGCCYHLLEEEFIRS 874 (1101)
Q Consensus 797 ~~~~~~~~~~~It~d~~l~~i-l~~~~~~~~~~~~~lvgLHaCGdLs~~~Lr~f~~-~~~~~l~~VgCCYhllte~~~~~ 874 (1101)
...+.+++++.+-... +....+..+..+..||||||||||++++||+|.. +++||||+|||||||++++|...
T Consensus 223 -----i~~v~~v~se~n~E~~~l~~kssd~n~~s~lLvGLHaCGDlS~t~LR~F~~~eevKalvsvGCCYh~lse~f~~~ 297 (476)
T KOG2651|consen 223 -----IHVVRWVDSEANCEELLLPLKSSDQNRASLLLVGLHACGDLSVTLLRHFSCCEEVKALVSVGCCYHKLSEPFHFL 297 (476)
T ss_pred -----ccccccCChhhhhhhhhccccCchhhhHHHHHhhhhhcccccHHHHHHHhhhHhhhhhheecchhhhhccchhhc
Confidence 0112222221111111 1100111122467899999999999999999997 57999999999999999987542
Q ss_pred CCccccccccccCCCccccchhhhhcc-cccChhHHHhcCCchhHHHhhhccC---hhhHHHHHHHHHHhhhhcccCCCC
Q psy9966 875 PFWKDVDQSLYEHGYGFPLSEHLRSRK-FFLGRNVRMSGTQSPERVIDLKQTQ---TLPLFYRALLEKYLRSKITINDEE 950 (1101)
Q Consensus 875 ~~~~~~~~~~~~~~~GFPmS~~l~~~~-~~lg~~aRm~AcqA~er~~~~~~~~---~~~lfyRAlLe~il~~~~~~~~~~ 950 (1101)
..+.+|||||+++|+.+ +.+|+++||+||||.|||......+ ...|+|||++|.+++++++... .
T Consensus 298 ----------~~ek~gypm~~~lk~~~~~elg~n~Re~ACha~Er~ae~~~ka~~~~r~~~yraa~q~vi~~~ype~r-~ 366 (476)
T KOG2651|consen 298 ----------RPEKGGYPMSQWLKGLPGYELGYNLREGACHALERYAERLQKAGPGLRTHCYRAALQTVIRRAYPELR-R 366 (476)
T ss_pred ----------chhccCCcchHHhhcCCCcccccchHHHHHhhHHHHHHhcccCCcchHHHHHHHHHHHHHHHhcchhc-c
Confidence 23468999999999875 9999999999999999998876654 3679999999999998877533 3
Q ss_pred ccccccccccCCCHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHH
Q psy9966 951 PKVVGRLATKCSNFVEYVHRAVDKLKLDLE-VDDEEVTRLFNSHQR--EYEYLQIYYFLKTALAPVIEALIVLDRVLYLR 1027 (1101)
Q Consensus 951 p~~vg~~~~~~~sF~~Y~~~al~kl~l~~~-i~~~ei~~~~~~~~~--~~~~l~~f~~Lr~~lapvvEslIlLDR~lyL~ 1027 (1101)
+...|.....+.+|++|++++++|+|+++. ++....+.+...+.+ +.+++.+||+||++|||+|||+|++||++||+
T Consensus 367 ~gr~~~k~~~qtsfeeyvrrsl~k~gl~~skl~~~ip~n~~~~~~~~ar~n~~~af~~Lr~~laP~iETlILlDRl~yLq 446 (476)
T KOG2651|consen 367 PGRQGIKRVHQTSFEEYVRRSLQKVGLHLSKLDPQIPLNLAALQAHLARENRVVAFFSLRLLLAPLIETLILLDRLLYLQ 446 (476)
T ss_pred ccccccceeecccHHHHHHHHHHHhCcchhhcChhcchhHHHhhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444578999999999999997752 333333444444444 78899999999999999999999999999999
Q ss_pred hcCCceeeehhhhccccCCChhhHHHHHhhhccchhHHHHHH
Q psy9966 1028 EQQKPQIISNLFLSLLTQVDDEEVTRLFDSHQREYEYLQIYY 1069 (1101)
Q Consensus 1028 Eqg~~~~~~~~~~~~l~~V~d~~ve~lfd~~~s~~~~vv~f~ 1069 (1101)
|||... .+.+|||+-.|++|.++|.+
T Consensus 447 Eqgi~s----------------~llpiFdP~iSPRnlAiIA~ 472 (476)
T KOG2651|consen 447 EQGIHS----------------ELLPIFDPEISPRNLAIIAT 472 (476)
T ss_pred Hccccc----------------eeeeccCCCCCcceeeeeee
Confidence 999754 45567777777777777654
No 3
>KOG1137|consensus
Probab=100.00 E-value=9.1e-72 Score=629.31 Aligned_cols=405 Identities=32% Similarity=0.537 Sum_probs=349.1
Q ss_pred CEEEEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhCCCeEEEeecch
Q psy9966 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFAL 80 (1101)
Q Consensus 1 Mf~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl~~GG~VLIPvFAl 80 (1101)
||+||++|.+|+|||||+++.|||+.+|++|+.++|+||+|||||+..|.+|.+||++|...|++++.+|||||||+||+
T Consensus 166 Mf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAl 245 (668)
T KOG1137|consen 166 MFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFAL 245 (668)
T ss_pred eeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcC--CCccEEEeChHHHHHHHHHHHhHhhhhHHHHHhhhhcCCCcCCCccccC-ccccCCCCCe
Q psy9966 81 GRAQELCILLETYWERMN--LQAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMFDFKHIRPFD-KSFIDNPGPM 157 (1101)
Q Consensus 81 GRaQELl~iL~~~w~~~~--~~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f~~~npF~fk~i~~~~-~~~~~~~gp~ 157 (1101)
||||||+++|++||..+. .++|||++|++|++|+.+||+|++.||++|++.+..+|||.|++++.+. -+-+++.|||
T Consensus 246 grAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~~Npfifk~vs~L~~~D~f~D~gP~ 325 (668)
T KOG1137|consen 246 GRAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSALRNPFIFKHVSILRTGDWFDDEGPS 325 (668)
T ss_pred chHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhccCCceEeeccccccccccccccCCc
Confidence 999999999999998775 4899999999999999999999999999999999999999999998875 2446789999
Q ss_pred EEEEcCCCCCCchHHHHHHHhCCCCCCeEEEecccCCCcchhhhhcCcceEEecCCeeEEEeeEEEEEecccCCCHHHHH
Q psy9966 158 VVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237 (1101)
Q Consensus 158 VViaspGmL~~G~s~~~~~~w~~d~~N~VI~tGy~~~GT~g~~Ll~g~k~i~l~~g~~i~v~~~V~~i~fSaHAD~~~l~ 237 (1101)
|++|+||||++|.|+++|++||+|++|+||++||+++||+++.++.+|++|...+|+.+|++|+|++++||||+|+.|..
T Consensus 326 vv~aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s 405 (668)
T KOG1137|consen 326 VVMASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNS 405 (668)
T ss_pred eeEeCchHhhhhhhHHHHHHhCCCCCCcEEeccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeechhhhhhH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHhCCCEEEEecCChhHHHHHHHHHHHHc-----CCceeecCCCCEEEEecCceeeEecchhhHHHHHhhcCCCCCC
Q psy9966 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF-----NLDCFMPANGESCFVQTDMKISIDVSVNLLKEEAVKYNSEPPN 312 (1101)
Q Consensus 238 ~~I~~l~Pk~VILVHGe~~~m~~Lk~~L~~e~-----gi~v~~P~nGe~v~l~~~~~~~v~~~~~ll~~~~~~~~~~~p~ 312 (1101)
+||+.++|+++|+||||.+.|.+||++|..++ .+++++|+|+|.+++.+.+.. ++ +.+|++...
T Consensus 406 ~fi~~i~~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~~ek-------la----k~~G~~a~~ 474 (668)
T KOG1137|consen 406 EFIADITPPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFPGEK-------LA----KTTGSLAEV 474 (668)
T ss_pred HHHHHhCCCeEEEEecccchhHHHHHHHHHHhccCCCcceecCCccceEeeeecCcch-------hh----hhhhccccC
Confidence 99999999999999999999999999999976 367999999999999998763 22 233332223
Q ss_pred CCCccceeEEEEeeCCceeeechhhhhhhcCceeEEEEEEeeeecCCCccccccHHHHHHHHHHhccCCCCCceEEEecC
Q psy9966 313 PLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDSSPINKTLELIYDQLLSYLQDKSQEYKIQLTES 392 (1101)
Q Consensus 313 ~~~~~~~~G~Lv~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 392 (1101)
|+. ..++|+|+.++++|.+++++|+..+..+++..++.++.++ +......+..+|+++.. .-.|.+++
T Consensus 475 p~~-~~~sgiLv~~~~~~~ils~edL~~ys~l~~~~~~erq~i~------~~~~~~li~~~l~~~~~-----e~~e~s~~ 542 (668)
T KOG1137|consen 475 PKE-DRVSGILVSYGFSYAILSPEDLILYSDLKTIPLNERQVIP------YMGRIALIGPNLIQGKN-----EMLETSKK 542 (668)
T ss_pred Ccc-ceEEEEEEecCCceeeccHHHhhhhhhheeeeccceEEEe------ccccHHhhhhHHHhcch-----hhhhcccC
Confidence 333 6799999999999999999999988889888777777665 44455677777766522 11122222
Q ss_pred e-EEEEEEEEEEeecCCCCeEEEEEcCCCc--hhHHHHHHHH
Q psy9966 393 S-LSIDSVLLSVERIDDKNKRVFVTWPNQD--EEVGKIVLHV 431 (1101)
Q Consensus 393 ~-~~~~~v~i~v~~~~~~~~~~~~~W~~~~--e~l~~~~~~~ 431 (1101)
+ +++..+..-+. ..++.+.++|..+. +-++.-+.-+
T Consensus 543 ~a~~v~~vi~v~~---~q~~~ivlEw~~~~~~D~~adSi~~~ 581 (668)
T KOG1137|consen 543 HAYRVELVIKVVK---PQEFPIVLEWLSNPENDMLADSIGAR 581 (668)
T ss_pred cceEEEeEEEEec---cCCceEEEEeccCchhhhhHhhhhhe
Confidence 2 35554444443 23568899998764 3444444333
No 4
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=2.4e-52 Score=468.95 Aligned_cols=280 Identities=33% Similarity=0.583 Sum_probs=252.6
Q ss_pred EEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCC--CCCCChhHHHHHHHHHHHHHHhCCCeEEEeecchh
Q psy9966 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYAT--TIRDSKRCRERDFLKKVHECVDRGGKVLIPVFALG 81 (1101)
Q Consensus 4 Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~--~~~~~r~~rE~~f~~~I~etl~~GG~VLIPvFAlG 81 (1101)
|-.|...|+|||||+.+++|.|++|.-.-.+++.||||||||. ..+++|.+.|++|.+.|++|+++||+||||+||+|
T Consensus 340 IGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP~fAVG 419 (637)
T COG1782 340 IGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKRGGKVLIPVFAVG 419 (637)
T ss_pred ecCCceeEEEecccccceeeecChhhccCcchhheeeeeccCCccccCccHHHHHHHHHHHHHHHHhcCCeEEEEeeecc
Confidence 3345569999999999999999988655568999999999995 46789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC-CccEEEeChHHHHHHHHHHHhHhhhhHHHHHhhh--hcCCCcCCCccccC-----ccccCC
Q psy9966 82 RAQELCILLETYWERMNL-QAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFV--QRNMFDFKHIRPFD-----KSFIDN 153 (1101)
Q Consensus 82 RaQELl~iL~~~w~~~~~-~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f~--~~npF~fk~i~~~~-----~~~~~~ 153 (1101)
|+||+|..|++++++.-. .+|||+ +||..++++++..|++|||..+++.+. ..|||.-...+.++ .++.++
T Consensus 420 R~QEvM~VLee~mr~g~ipe~PVYl-DGMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~~r~~i~~~ 498 (637)
T COG1782 420 RSQEVMIVLEEAMRKGLIPEVPVYL-DGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSDERQEIIES 498 (637)
T ss_pred ccceehhHHHHHHhcCCCCCCceee-eeeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChhHHHHHhcC
Confidence 999999999999987554 599999 699999999999999999999998864 47999765555443 246778
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHhCCCCCCeEEEecccCCCcchhhhhcCcceEEec--CC--eeEEEeeEEEEE-ecc
Q psy9966 154 PGPMVVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFE--NK--QIIDVKMAIEYM-SFS 228 (1101)
Q Consensus 154 ~gp~VViaspGmL~~G~s~~~~~~w~~d~~N~VI~tGy~~~GT~g~~Ll~g~k~i~l~--~g--~~i~v~~~V~~i-~fS 228 (1101)
+.||||+||+|||.+|++.++|+.|++||+|++||.|||++||+||++.+|++++++. +| ..++++|.|+.+ +||
T Consensus 499 ~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQAeGTLGRriq~G~kEipi~~~~G~te~i~inMeV~tieGFS 578 (637)
T COG1782 499 DEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEGTLGRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFS 578 (637)
T ss_pred CCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEeccCcchhhhhhcCceecccccCCCCeEEEEEEEEEEEecCcC
Confidence 8999999999999999999999999999999999999999999999999999999863 23 358899999999 899
Q ss_pred cCCCHHHHHHHHHHhC--CCEEEEecCChhHHHHHHHHHHHHcCCceeecCCCCEEEE
Q psy9966 229 AHADAKGIMQLIQYCE--PKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFV 284 (1101)
Q Consensus 229 aHAD~~~l~~~I~~l~--Pk~VILVHGe~~~m~~Lk~~L~~e~gi~v~~P~nGe~v~l 284 (1101)
||+|+.||+++|+.++ |++|+++|||+.+...|++.+...|++..++|+|.|++++
T Consensus 579 GHsdrrqL~~yvr~~~PkP~ki~~~HGe~sk~~~lA~si~~~~~i~t~ap~nLetiR~ 636 (637)
T COG1782 579 GHSDRRQLMKYVRRMNPKPEKILLNHGEPSKCLDLASSIRRKFKIETYAPKNLETIRL 636 (637)
T ss_pred CCccHHHHHHHHHhcCCCCceeEeecCChHHHHHHHHHHHhhcceeeeccccccceec
Confidence 9999999999999996 5799999999999999999999999999999999999976
No 5
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=2.6e-51 Score=497.75 Aligned_cols=283 Identities=32% Similarity=0.566 Sum_probs=257.1
Q ss_pred CEEEEEC--CEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHhCCCeEEEe
Q psy9966 1 MFQVKVG--NQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTI--RDSKRCRERDFLKKVHECVDRGGKVLIP 76 (1101)
Q Consensus 1 Mf~Ie~~--g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~~--~~~r~~rE~~f~~~I~etl~~GG~VLIP 76 (1101)
||.++++ +.+|+|||||+..+++++.++..+..++|+||+|||||++. |+++.++|.+|.+.|.+++++||+||||
T Consensus 329 ~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP 408 (630)
T TIGR03675 329 IAHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIP 408 (630)
T ss_pred EEEEEECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5667764 36999999999999999987765556899999999999987 8899999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHHHHHhcCC-CccEEEeChHHHHHHHHHHHhHhhhhHHHHHhhh--hcCCCcCCCccccC-----c
Q psy9966 77 VFALGRAQELCILLETYWERMNL-QAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFV--QRNMFDFKHIRPFD-----K 148 (1101)
Q Consensus 77 vFAlGRaQELl~iL~~~w~~~~~-~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f~--~~npF~fk~i~~~~-----~ 148 (1101)
+||+||+|||+.+|+++|++..+ ++|||++ +|+.+++++|+.|++||++++++.+. ..|||.|++++.++ +
T Consensus 409 ~favGR~QEll~~L~~~~~~g~lp~~pIy~d-g~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~~~v~~~~~~~ 487 (630)
T TIGR03675 409 VFAVGRAQEVMLVLEEAMRKGLIPEVPVYLD-GMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFVRVEGSDERR 487 (630)
T ss_pred echhHHHHHHHHHHHHHHHhCCCCCCcEEEE-chHHHHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCceEEeCCHHHHH
Confidence 99999999999999999987554 7999996 59999999999999999999887754 57999998887654 2
Q ss_pred cccCCCCCeEEEEcCCCCCCchHHHHHHHhCCCCCCeEEEecccCCCcchhhhhcCcceEEecC---CeeEEEeeEEEEE
Q psy9966 149 SFIDNPGPMVVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFEN---KQIIDVKMAIEYM 225 (1101)
Q Consensus 149 ~~~~~~gp~VViaspGmL~~G~s~~~~~~w~~d~~N~VI~tGy~~~GT~g~~Ll~g~k~i~l~~---g~~i~v~~~V~~i 225 (1101)
++....+|||||||||||++|+++++|++|++|++|+|||||||++||+|++|++|++++++.+ .+.++++|+|+.+
T Consensus 488 ~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~ 567 (630)
T TIGR03675 488 EIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAEGTLGRRIQSGWREIPLTDEGKTETIKINMEVETV 567 (630)
T ss_pred HHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCCCchHHHHhcCCcEEEecCCCCceEEEEEEEEEEe
Confidence 3456789999999999999999999999999999999999999999999999999999999873 2789999999999
Q ss_pred e-cccCCCHHHHHHHHHHhCC--CEEEEecCChhHHHHHHHHHHHHcCCceeecCCCCEEEE
Q psy9966 226 S-FSAHADAKGIMQLIQYCEP--KNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFV 284 (1101)
Q Consensus 226 ~-fSaHAD~~~l~~~I~~l~P--k~VILVHGe~~~m~~Lk~~L~~e~gi~v~~P~nGe~v~l 284 (1101)
. ||||||+.||++|++.++| ++|++||||+.++..|++.|.+++++++++|+|||+++|
T Consensus 568 ~gfSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 568 EGFSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFNIETYAPKNLETIRL 629 (630)
T ss_pred CCccccCCHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhCCcEEeCCCCCEEEe
Confidence 5 9999999999999999965 999999999999999999999999999999999999987
No 6
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-42 Score=402.08 Aligned_cols=275 Identities=35% Similarity=0.531 Sum_probs=247.6
Q ss_pred CEEEEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhCCCeEEEeecch
Q psy9966 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFAL 80 (1101)
Q Consensus 1 Mf~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl~~GG~VLIPvFAl 80 (1101)
||.||.++.+|+|||||++.+++++.+++++.. +|+||+|||||++.|+++.+.|++|.+.|.+++.+||+||||+||+
T Consensus 148 ~~~le~~~~~ilytGD~~~~~~~l~~~a~~~~~-~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~ 226 (427)
T COG1236 148 AILLEVDGGRILYTGDVKRRKDRLLNGAELPPC-IDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFAL 226 (427)
T ss_pred EEEEEeCCceEEEEeccCCCcCCCCCccccCCC-CcEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 689999999999999999999999999987766 9999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCccEEEeChHHHHHHHHHHHhHhhhhHHHHHhhhhcCCCcCCCccccC--ccccCCCCCeE
Q psy9966 81 GRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMFDFKHIRPFD--KSFIDNPGPMV 158 (1101)
Q Consensus 81 GRaQELl~iL~~~w~~~~~~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f~~~npF~fk~i~~~~--~~~~~~~gp~V 158 (1101)
||+|||+.+|+.+|.+. ++|||+++++++.++.+++.+.+|++....+.+..+ |+.++... .......+|+|
T Consensus 227 graQEll~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~v 300 (427)
T COG1236 227 GRAQELLLILRELGFAG--DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR----FRFVESRRNSMREGIDKGPAV 300 (427)
T ss_pred cHHHHHHHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh----cccccchhhhhhhhccCCceE
Confidence 99999999999999765 799999999999999999999999999887765433 33443332 12345678999
Q ss_pred EEEcCCCCCCchHHHHHHHhCCCCCCeEEEecccCCCcchhhhhcCcceEEecCCeeEEEeeEEEEEecccCCCHHHHHH
Q psy9966 159 VFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQ 238 (1101)
Q Consensus 159 ViaspGmL~~G~s~~~~~~w~~d~~N~VI~tGy~~~GT~g~~Ll~g~k~i~l~~g~~i~v~~~V~~i~fSaHAD~~~l~~ 238 (1101)
|++++||+++|.++.++++|+++++|.++++||+++||+|+.+++++..+.+. +..++++++|+.+.||+|||+.++.+
T Consensus 301 i~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~~~~~~~~~-~~~i~~~~~ve~~~~s~Had~~~l~~ 379 (427)
T COG1236 301 VLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGTSVHIK-GIEIKVKARVEELDFSAHADGDELLE 379 (427)
T ss_pred EEEecccccCCcHHHHHHHHhcCCcceEEEcccccCCcchhHHhcCCcEEeec-ceeecccceEEEeccccccCcHHHHH
Confidence 99999999999999999999999999999999999999999999988777776 67899999999999999999999999
Q ss_pred HHHHhCCCEEEEecCChhHHHHHHHHHHHH-cCC-ceeecCCCCEEE
Q psy9966 239 LIQYCEPKNVLLVHGEASKMVFLKEKIKQE-FNL-DCFMPANGESCF 283 (1101)
Q Consensus 239 ~I~~l~Pk~VILVHGe~~~m~~Lk~~L~~e-~gi-~v~~P~nGe~v~ 283 (1101)
||+...|++|+++||++..+..++..+.++ .+. .+++|+||+.+.
T Consensus 380 ~i~~~~~~~v~~~Hg~~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~ 426 (427)
T COG1236 380 FIKDISPPKVVLVHGEPEYGAALRARLLEELIGIRELELPANGEEYE 426 (427)
T ss_pred HHhcCCCceEEEEeCCchhhhHHHHHHHHhhCCcceeecCCCccccC
Confidence 999999999999999998877777777776 466 589999999875
No 7
>KOG1135|consensus
Probab=99.97 E-value=8.3e-30 Score=296.12 Aligned_cols=301 Identities=30% Similarity=0.533 Sum_probs=262.6
Q ss_pred CEEEEECCEEEEEEcCCCCCCCCCCCCcccC-CCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhCCCeEEEeecc
Q psy9966 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWID-KCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFA 79 (1101)
Q Consensus 1 Mf~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip-~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl~~GG~VLIPvFA 79 (1101)
.|.|-.++.+|+|.-|||+.+++||++..+. ..+|.+||+++-...-..++|+.|...|.+.|.++++.||+|||||..
T Consensus 156 IWkI~k~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~~~~~rkkRDe~f~d~v~~~L~~~G~VlipVDt 235 (764)
T KOG1135|consen 156 IWKISKVGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALYSQPRRKKRDEQFLDTVLKTLRSGGNVLIPVDT 235 (764)
T ss_pred EEEEEecCceEEEEEecccchhcccCCccccccCCcceEEeccccccccccchhHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 4889999999999999999999999998776 479999999998877665788999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhc--CC-CccEEEeChHHHHHHHHHHHhHhhhhHHHHHhhhh--cCCCcCCCccccC--cccc-
Q psy9966 80 LGRAQELCILLETYWERM--NL-QAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQ--RNMFDFKHIRPFD--KSFI- 151 (1101)
Q Consensus 80 lGRaQELl~iL~~~w~~~--~~-~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f~~--~npF~fk~i~~~~--~~~~- 151 (1101)
.||..||+.+|++.|.+. ++ .+||++.|+.+.+...+.+.+++||++++-+.|.. .|||.|+|+.... .++.
T Consensus 236 AgRvLELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr 315 (764)
T KOG1135|consen 236 AGRVLELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSR 315 (764)
T ss_pred cHHHHHHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhc
Confidence 999999999999999765 55 49999999999999999999999999999999864 6999999986643 2332
Q ss_pred CCCCCeEEEEcCCCCCCchHHHHHHHhCCCCCCeEEEecccCCCcchhhhhcCcce---EE--------e----------
Q psy9966 152 DNPGPMVVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKK---LE--------F---------- 210 (1101)
Q Consensus 152 ~~~gp~VViaspGmL~~G~s~~~~~~w~~d~~N~VI~tGy~~~GT~g~~Ll~g~k~---i~--------l---------- 210 (1101)
-.+||.||+||...|+.|.|+++|-.|+.|++|.|+||....+||+++++++.+++ +. +
T Consensus 316 ~p~gpkVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~ 395 (764)
T KOG1135|consen 316 VPPGPKVVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVKLEGEELLEYLE 395 (764)
T ss_pred CCCCCeEEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccCCchHHHHHHHh
Confidence 24669999999999999999999999999999999999999999999988653200 00 0
Q ss_pred --------------------------------------------------------------------------------
Q psy9966 211 -------------------------------------------------------------------------------- 210 (1101)
Q Consensus 211 -------------------------------------------------------------------------------- 210 (1101)
T Consensus 396 ~e~~r~e~~~~~~~~~~~~~~~~~~Sd~~dd~d~~~~~~~~Hd~~~~~~~~~~~~f~~~~~~~~~MFPy~e~r~k~DdYG 475 (764)
T KOG1135|consen 396 GERLRNEDALRLNVNRDVEIDSSHESDDSDDEDMENDTEVRHDIMSKAGKSTKDGFFKSAKSKHPMFPYIEERRKWDDYG 475 (764)
T ss_pred hhhhhhhhhHHhhccCCccccccccCCcccccccccccccchhhhhccCCcccccccccccccCcccCCcHHhccccccc
Confidence
Q ss_pred ----------------------------------------------------cCCeeEEEeeEEEEEecccCCCHHHHHH
Q psy9966 211 ----------------------------------------------------ENKQIIDVKMAIEYMSFSAHADAKGIMQ 238 (1101)
Q Consensus 211 ----------------------------------------------------~~g~~i~v~~~V~~i~fSaHAD~~~l~~ 238 (1101)
.+...+.++|+|+.|.+-|-.|.+.++.
T Consensus 476 EiI~~~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDyeGisDgrSik~ 555 (764)
T KOG1135|consen 476 EIIKPDDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDYEGISDGRSIKK 555 (764)
T ss_pred cccCHHHcccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEEEEEeeeeccccchhHHH
Confidence 0012578999999999999999999999
Q ss_pred HHHHhCCCEEEEecCChhHHHHHHHHHHHHcC--CceeecCCCCEEEEecCcee-eEecchhhHHH
Q psy9966 239 LIQYCEPKNVLLVHGEASKMVFLKEKIKQEFN--LDCFMPANGESCFVQTDMKI-SIDVSVNLLKE 301 (1101)
Q Consensus 239 ~I~~l~Pk~VILVHGe~~~m~~Lk~~L~~e~g--i~v~~P~nGe~v~l~~~~~~-~v~~~~~ll~~ 301 (1101)
+|.+++|+++|+|||..+..+.++......-+ +.||+|+-||.++++.+-.+ .|.++..+++.
T Consensus 556 ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~~~~~~vyaP~~~e~idvtsd~~~y~V~L~d~l~~~ 621 (764)
T KOG1135|consen 556 IIAQLSPRKLILVHGSAEDTRDLKHTCASLGCFTIDVYAPKSGEIIDVTSDVHIYQVKLSDGLLSN 621 (764)
T ss_pred HHhccCccEEEEecCCchhhHHHHHHHHhcCCCcceeecccccceEEeeehheeeeeEechhhhhh
Confidence 99999999999999999999999987776434 68999999999999998765 88898888854
No 8
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=99.96 E-value=3.6e-29 Score=251.86 Aligned_cols=132 Identities=37% Similarity=0.623 Sum_probs=105.6
Q ss_pred chHHHHHHHHHHHHHHhcc----CCCCeEEEEcCccchHhHHHHh-----cCCCeEEEEeCCccccchHHHHhhhhhhhh
Q psy9966 669 KKSYEVQVMSQVVAAVTNS----CDSSHIIDLGGGQGYLSTILAL-----QHGKKTLSLDYNQVNTHGAAVRSKKLEDSE 739 (1101)
Q Consensus 669 KK~hEV~~~s~~v~~l~~~----~~~~~vVD~GsGkGyLsr~La~-----~~~~~V~~IE~~~~~~~gA~~r~~kl~~~~ 739 (1101)
||+|||++|+++|+++++. .++.+|||||||+||||++||+ .++++|+|||+++.++++|..|++++...+
T Consensus 1 kK~~Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~ 80 (141)
T PF13679_consen 1 KKRHEIERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDL 80 (141)
T ss_pred ChHHHHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchh
Confidence 8999999999999999877 7788999999999999999999 899999999999999999998887654211
Q ss_pred hhccCCCccchhhhhhhhhhhhhccccccccccccccccccccCCCccccccchhhhcccccccccccccCCCchhhhhh
Q psy9966 740 KESKGPFQSYAGVINKKLWMRTQNRQTSHASVEHHGKNWKRKSKAPVVSIKDEELVVCKDKCKQITHFVTPDSDISSILS 819 (1101)
Q Consensus 740 k~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~It~d~~l~~il~ 819 (1101)
.. .. +++..+ ..+..
T Consensus 81 ~~--------------~~------------------------------------------------~~~~~~--~~~~~- 95 (141)
T PF13679_consen 81 EK--------------RL------------------------------------------------SFIQGD--IADES- 95 (141)
T ss_pred hc--------------cc------------------------------------------------hhhccc--hhhhc-
Confidence 00 00 000000 00000
Q ss_pred hcCCCCCCCceEEEEEecCcchhHHHHHHHHhcCCceEEEecccccchhhh
Q psy9966 820 QAYPQDSLHNVCIMGLHTCGDLSGTALRLFTKSSLQCLVQVGCCYHLLEEE 870 (1101)
Q Consensus 820 ~~~~~~~~~~~~lvgLHaCGdLs~~~Lr~f~~~~~~~l~~VgCCYhllte~ 870 (1101)
....+.++|||||||||++++||+|+++++++|++||||||+|+++
T Consensus 96 -----~~~~~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vpCCyh~l~~~ 141 (141)
T PF13679_consen 96 -----SSDPPDILVGLHACGDLSDRALRLFIRPNARFLVLVPCCYHKLTEQ 141 (141)
T ss_pred -----ccCCCeEEEEeecccchHHHHHHHHHHcCCCEEEEcCCccchhhcC
Confidence 0134679999999999999999999998899999999999999874
No 9
>KOG1138|consensus
Probab=99.95 E-value=1.5e-26 Score=260.58 Aligned_cols=406 Identities=16% Similarity=0.180 Sum_probs=299.6
Q ss_pred EEEEECCEEEEEEcCCCCCCCCCCCCccc-CCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhCCCeEEEeecch
Q psy9966 2 FQVKVGNQSIVYTGDYNMTPDRHLGAAWI-DKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFAL 80 (1101)
Q Consensus 2 f~Ie~~g~rIlYTGDf~~~~dr~L~~a~i-p~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl~~GG~VLIPvFAl 80 (1101)
|.|....+++-|..|=+.- ..|..+.+. +....|+||+.+-...+.. +.+++-.+|++.|..+++++|.||+|++..
T Consensus 226 W~I~t~nek~sYvS~Ss~l-tth~r~md~a~Lk~~Dvli~T~lsql~ta-npd~m~gelc~nvt~~~rn~GsvL~PcyPs 303 (653)
T KOG1138|consen 226 WLINTPNEKLSYVSGSSFL-TTHPRPMDQAGLKETDVLIYTGLSQLPTA-NPDEMGGELCKNVTLTGRNHGSVLLPCYPS 303 (653)
T ss_pred eEEecCCcceEEEecCccc-ccCCccccccccccccEEEEecccccccC-CccchhhhHHHHHHHHhhcCCceeeeccCC
Confidence 8899999999998887753 233332222 3568999999887654432 446677899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCC-CccEEEeChHHHHHHHHHHHhHhhhhHHHHHhh-hhcCCCcCCCcc------ccC---cc
Q psy9966 81 GRAQELCILLETYWERMNL-QAPIYFAVGLTEKATNYYKMFITWTNQKIRKTF-VQRNMFDFKHIR------PFD---KS 149 (1101)
Q Consensus 81 GRaQELl~iL~~~w~~~~~-~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f-~~~npF~fk~i~------~~~---~~ 149 (1101)
|-..||++++..+.+..+. +.|||++||.|..++++.+.+.+||+...+.+. .++.||....+. .+. ..
T Consensus 304 Gviydl~Ecls~~idna~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~ 383 (653)
T KOG1138|consen 304 GVIYDLIECLSQDIDNAGLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGL 383 (653)
T ss_pred chhhHHHHHhhhcccccCCcCCcceEecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceeehHHHHHH
Confidence 9999999999999887765 799999999999999999999999999877764 578888765431 111 12
Q ss_pred c-cCCCCCeEEEEcCCCCCCchHHHHHHHhCCCCCCeEEEecccCCCcchhhhhcCcceEEecCCeeEEEeeEEEEEecc
Q psy9966 150 F-IDNPGPMVVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFS 228 (1101)
Q Consensus 150 ~-~~~~gp~VViaspGmL~~G~s~~~~~~w~~d~~N~VI~tGy~~~GT~g~~Ll~g~k~i~l~~g~~i~v~~~V~~i~fS 228 (1101)
+ .+...||||++++..++.|.+.|+++-|..+|+|+||+|..-.+-- ..+. +..|+.|++-|+++-
T Consensus 384 fSndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~~~---~vl~----------PfrpLamK~i~cpid 450 (653)
T KOG1138|consen 384 FSNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFSYL---LVLA----------PFRPLAMKIIYCPID 450 (653)
T ss_pred HhhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCchh---hhhc----------CCccccceeEecccc
Confidence 2 3457899999999999999999999999999999999996432211 1111 345677889999999
Q ss_pred cCCCHHHHHHHHHHhCCCEEEEecC--ChhHHHHHHHHHHHHcCCceeecCCCCEEEEecCcee-eEecchhhHHHHHhh
Q psy9966 229 AHADAKGIMQLIQYCEPKNVLLVHG--EASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKI-SIDVSVNLLKEEAVK 305 (1101)
Q Consensus 229 aHAD~~~l~~~I~~l~Pk~VILVHG--e~~~m~~Lk~~L~~e~gi~v~~P~nGe~v~l~~~~~~-~v~~~~~ll~~~~~~ 305 (1101)
-..++.++.++++.++|+.|+..-. .+......+. +...--.++..-+.+|.++++.++.+ .|.+..+++++..-+
T Consensus 451 trlnfqql~kLlkelqPk~vlcpeaytqp~~~ap~~~-i~~~d~~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~k 529 (653)
T KOG1138|consen 451 TRLNFQQLPKLLKELQPKIVLCPEAYTQPIPLAPIKT-ISILDYFPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPK 529 (653)
T ss_pred ccccHHHHHHHHHHhCCCEEEChhhhcCCCCccchhe-ehhccccccceeehhHHhcCccccceeEEEEcHHHHhhCChh
Confidence 9999999999999999997776532 2222222221 11111124666788899999988876 899999988532100
Q ss_pred cCCCCCCCCCccceeEEEEeeCCceeeechhhhhhhcCceeEEEEEEeeee-cCCCccccccHHHHHHHHHHhccCCCCC
Q psy9966 306 YNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQ-ISDSSPINKTLELIYDQLLSYLQDKSQE 384 (1101)
Q Consensus 306 ~~~~~p~~~~~~~~~G~Lv~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (1101)
.+.+.+-..+.++|+|.++|++++|++..+- ++..... +...+ .+..++..++-..+...++...++++.+
T Consensus 530 --e~~~~~~~iAtl~~~L~~~d~kh~Lvp~~~~-----~k~ek~s-~~~~p~lk~lk~~~a~ei~vda~~k~~ik~~~s~ 601 (653)
T KOG1138|consen 530 --ELRQGEFGIATLKGVLLMKDGKHRLVPAKVS-----LKQEKSS-SKARPVLKVLKNSVAGEILVDALLKMLIKGGFSQ 601 (653)
T ss_pred --hccCceeEEEEEEEEEEEecCceeeeecccc-----hhhhhcc-cccchHHhhhhhccCcccchHHHHHHHhhcchhh
Confidence 0222223567899999999999999975442 2221000 01111 2222334555567788888889999999
Q ss_pred ceEEEec-CeE--EE-EEEEEEEeecCCCCeEEEEEcCCCchhHHHHHHHHHHhhcc
Q psy9966 385 YKIQLTE-SSL--SI-DSVLLSVERIDDKNKRVFVTWPNQDEEVGKIVLHVLKSMSN 437 (1101)
Q Consensus 385 ~~v~~~~-~~~--~~-~~v~i~v~~~~~~~~~~~~~W~~~~e~l~~~~~~~~~~~~~ 437 (1101)
.+|+.++ |++ +. +..+|+++ |..||++| ++|+-+|..++++..++++
T Consensus 602 itvdn~g~g~~i~~~e~enlikf~--Em~t~Ii~----~dd~~v~~~~~di~~~llq 652 (653)
T KOG1138|consen 602 ITVDNTGEGKSIILIENENLIKFE--EMGTHIIC----GDDNVVRQVLRDIDGKLLQ 652 (653)
T ss_pred eeeecCCCceEEEeccCchhhhhh--hccceEEE----CCCchhhhhhHhhhhhhcc
Confidence 9999988 664 22 66789998 78999999 9999999999999888775
No 10
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.93 E-value=1.8e-24 Score=254.74 Aligned_cols=254 Identities=18% Similarity=0.246 Sum_probs=186.9
Q ss_pred CEEEEECCEEEEEEcCCCCCCCCCCC-Ccc------cCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHH-hCCCe
Q psy9966 1 MFQVKVGNQSIVYTGDYNMTPDRHLG-AAW------IDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECV-DRGGK 72 (1101)
Q Consensus 1 Mf~Ie~~g~rIlYTGDf~~~~dr~L~-~a~------ip~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl-~~GG~ 72 (1101)
+|+++.++++|+||||++...++... +++ ....++|+||+||||+.+ +.+...|..+.+.+.+++ +.+|+
T Consensus 143 g~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~--~~~~~~e~~~~~~i~~~~~~~~~~ 220 (422)
T TIGR00649 143 GFALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVEN--PGFTPSEAKVLEQLNDIFKNAKGR 220 (422)
T ss_pred EEEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCC--CCCCCCHHHHHHHHHHHHHhCCCE
Confidence 47888889999999999987665543 222 134579999999999974 333456778888888888 57999
Q ss_pred EEEeecc--hhHHHHHHHHHHHHHHhcCCCccEEEeChHHHHHHHHHHHhHhhhhHHHHHhhhhcCCCcCCCccccCccc
Q psy9966 73 VLIPVFA--LGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMFDFKHIRPFDKSF 150 (1101)
Q Consensus 73 VLIPvFA--lGRaQELl~iL~~~w~~~~~~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f~~~npF~fk~i~~~~~~~ 150 (1101)
+++|+|| ++|.|+++.++.++ +.||++.+.++.++++++..+ +|++.. ...+-.. +++
T Consensus 221 viv~~fa~~~~R~~~i~~~a~~~------~r~v~v~g~~~~~~~~~~~~~-g~~~~~---------~~~~~~~----~~i 280 (422)
T TIGR00649 221 VIVATFASNIHRVQQLIQIARKQ------GRKFAVYGRSMEHLFGIARRL-GLIKNP---------HNNFISL----KEV 280 (422)
T ss_pred EEEEEccccHHHHHHHHHHHHHh------CCEEEEECccHHHHHHHHHHc-CCccCC---------ccceeCH----HHH
Confidence 9999999 99999999999887 568999888888888888765 444311 0000001 122
Q ss_pred cCC-CCCeEEEEcCCCCCCchHHHHHHHhCCCC--------CCeEEEecccCCCcchhhhhcCcceEEecCCeeEEEeeE
Q psy9966 151 IDN-PGPMVVFATPGMLHSGLSLIIFKKWAPVE--------NNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMA 221 (1101)
Q Consensus 151 ~~~-~gp~VViaspGmL~~G~s~~~~~~w~~d~--------~N~VI~tGy~~~GT~g~~Ll~g~k~i~l~~g~~i~v~~~ 221 (1101)
... ++++||++|++ ++|+ ...+.+++.++ .++||++. ++++|++.++....+ +|....+.++
T Consensus 281 ~~~~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s~---~~~~G~~~~~~~~~~---~~~~~~~~~~ 351 (422)
T TIGR00649 281 NNSPDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVVFSA---PPIPGNENIAVSILL---DIRLNEVGAR 351 (422)
T ss_pred hcCCcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEEEEC---CCCCcHHHHHHHHHH---HHHHHhcCCE
Confidence 222 36899999888 6677 77788888864 47899884 455555422211111 1122334555
Q ss_pred EEE-EecccCCCHHHHHHHHHHhCCCEEEEecCChhHHHHHHHHHHHHcCC---ceeecCCCCEEEEec
Q psy9966 222 IEY-MSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNL---DCFMPANGESCFVQT 286 (1101)
Q Consensus 222 V~~-i~fSaHAD~~~l~~~I~~l~Pk~VILVHGe~~~m~~Lk~~L~~e~gi---~v~~P~nGe~v~l~~ 286 (1101)
|.+ ++|||||+.+++..||+.++|+++|+||||++....+++ +.++.|+ ++++|+||+++.+..
T Consensus 352 ~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~~~~~-~a~~~g~~~~~~~~~~nG~~~~~~~ 419 (422)
T TIGR00649 352 VIKRIHVSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLINHTK-LAEEEGYPGENIFILRNGDVLEING 419 (422)
T ss_pred EEeceEecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHHHHHH-HHHHcCCCcccEEEecCCcEEEecC
Confidence 655 899999999999999999999999999999999999997 4466786 799999999998864
No 11
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.86 E-value=1.6e-21 Score=191.99 Aligned_cols=119 Identities=34% Similarity=0.691 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhcCC--CccEEEeChHHHHHHHHHHHhHhhhhHHHHHhhhhcC--CC-cCCCccccC--ccccCCCC
Q psy9966 83 AQELCILLETYWERMNL--QAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRN--MF-DFKHIRPFD--KSFIDNPG 155 (1101)
Q Consensus 83 aQELl~iL~~~w~~~~~--~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f~~~n--pF-~fk~i~~~~--~~~~~~~g 155 (1101)
+|||+.+|+++|+++.. ++|||++|+++.+++++|+.+.+||++++.+.+...+ || .+.+++..+ +++....+
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFVKSVDESKELNALSG 80 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEEESHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEecccccccccccCCC
Confidence 69999999999987763 7999999999999999999999999999888775433 34 233343333 23333459
Q ss_pred CeEEEEcCCCCCCchHHHHHHHhCCCCCCeEEEecccCCCcchhhh
Q psy9966 156 PMVVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKV 201 (1101)
Q Consensus 156 p~VViaspGmL~~G~s~~~~~~w~~d~~N~VI~tGy~~~GT~g~~L 201 (1101)
|+|||||+|||++|+|+++|++|++|++|+||||||+++||+|++|
T Consensus 81 p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~T~g~~l 126 (126)
T PF10996_consen 81 PKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPGTLGRRL 126 (126)
T ss_dssp SEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TTSHHHHH
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCCCccccC
Confidence 9999999999999999999999999999999999999999999875
No 12
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.70 E-value=1.2e-15 Score=182.66 Aligned_cols=256 Identities=20% Similarity=0.268 Sum_probs=173.7
Q ss_pred EEEEECCEEEEEEcCCCCCCCCCCCC-cc------cCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHh-CCCeE
Q psy9966 2 FQVKVGNQSIVYTGDYNMTPDRHLGA-AW------IDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVD-RGGKV 73 (1101)
Q Consensus 2 f~Ie~~g~rIlYTGDf~~~~dr~L~~-a~------ip~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl~-~GG~V 73 (1101)
+.|+++.+.|+|||||+.++++..+. ++ +...++++||||||.+.. +.....|+.....+.++++ ..|+|
T Consensus 152 ~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~--pg~t~SE~~v~~~l~~i~~~a~grV 229 (555)
T COG0595 152 IVIKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAEN--PGFTPSESEVGENLEDIIRNAKGRV 229 (555)
T ss_pred EEEECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCC--CCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 56788889999999999998777643 33 346789999999999984 3345567777777777775 68999
Q ss_pred EEeecc--hhHHHHHHHHHHHHHHhcCCCccEEEeChHHHHHHHHHHHhHhhhhHHHHHhhhhcCCCc-CCCccccCccc
Q psy9966 74 LIPVFA--LGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMFD-FKHIRPFDKSF 150 (1101)
Q Consensus 74 LIPvFA--lGRaQELl~iL~~~w~~~~~~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f~~~npF~-fk~i~~~~~~~ 150 (1101)
++-+|| ++|.|.++.+..++ +.++.+.+..+.+...+.+....|-.. .+.|. -+.+..+
T Consensus 230 Iv~tfaSni~Ri~~i~~~A~~~------gR~vvv~GrSm~~~~~~a~~lg~~~~~--------~~~~i~~~~~~~~---- 291 (555)
T COG0595 230 IVTTFASNIERIQTIIDAAEKL------GRKVVVTGRSMERLIAIARRLGYLKLP--------DESFIEIREVKRY---- 291 (555)
T ss_pred EEEEchhhHHHHHHHHHHHHHc------CCeEEEEcHhHHHHHHHHhhcccccCc--------cccccCHHHhccc----
Confidence 999999 89999999998876 456777676666666666554222111 11110 0111111
Q ss_pred cCCCCCeEEEEcCCCCCCchHHHHHHHhCC--------CCCCeEEEecccCCCcch--hhhhcCcceEEecCCeeEEEee
Q psy9966 151 IDNPGPMVVFATPGMLHSGLSLIIFKKWAP--------VENNMLIMPGFCVQGTIG--HKVLSGVKKLEFENKQIIDVKM 220 (1101)
Q Consensus 151 ~~~~gp~VViaspGmL~~G~s~~~~~~w~~--------d~~N~VI~tGy~~~GT~g--~~Ll~g~k~i~l~~g~~i~v~~ 220 (1101)
. ...-++++|..+ |.....+.+++. .+.++|||+.-..+|... ..+++.-.+ . | +.+.-
T Consensus 292 ~--~~~~lii~TG~q---gep~aaL~r~a~~~h~~~~i~~gD~vIfss~~ipgne~~~~~~~n~l~~---~-g--~~i~~ 360 (555)
T COG0595 292 P--DEEVLIICTGSQ---GEPMAALSRMANGEHRYVKIKEGDTVIFSSSPIPGNEAAVYRLLNRLYK---A-G--AKVIT 360 (555)
T ss_pred c--ccceEEEEeCCC---CCchhhhhHhhcCCccceecCCCCeEEEeccCcCCcHHHHHHHHHHHHh---c-C--cEEee
Confidence 1 113456666543 322233333332 366799999888888432 233321000 0 1 11111
Q ss_pred E-EEEEecccCCCHHHHHHHHHHhCCCEEEEecCChhHHHHHHHHHHHHcCC---ceeecCCCCEEEEecCce
Q psy9966 221 A-IEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNL---DCFMPANGESCFVQTDMK 289 (1101)
Q Consensus 221 ~-V~~i~fSaHAD~~~l~~~I~~l~Pk~VILVHGe~~~m~~Lk~~L~~e~gi---~v~~P~nGe~v~l~~~~~ 289 (1101)
. ...+|.|||+..+++..||+.++|+++|+|||+.+.+..+++ +..+.|+ +++.++||+.+++..+.-
T Consensus 361 ~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~~~a~-la~~~G~~~~~i~i~~nG~v~~l~~~~~ 432 (555)
T COG0595 361 GGDKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRMLVAHAK-LAEEEGIPQENIFILRNGDVLELEGGKA 432 (555)
T ss_pred cccceeEecCCCChHHHHHHHHhhCCceecccCCCcHHHHHHHH-HHHhcCCCcccEEEecCceEEEecCCcc
Confidence 1 145799999999999999999999999999999998888884 6666664 599999999999986543
No 13
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=99.09 E-value=9.6e-11 Score=94.41 Aligned_cols=42 Identities=38% Similarity=0.753 Sum_probs=37.2
Q ss_pred eEEEeeEEEEEecccCCCHHHHHHHHHHhCCCEEEEecCChh
Q psy9966 215 IIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAS 256 (1101)
Q Consensus 215 ~i~v~~~V~~i~fSaHAD~~~l~~~I~~l~Pk~VILVHGe~~ 256 (1101)
.++++|+|+.++||||||+++|.+||+.++|+++||||||++
T Consensus 2 ~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe~~ 43 (43)
T PF07521_consen 2 MIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILVHGEPR 43 (43)
T ss_dssp EEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSEHH
T ss_pred EEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 578999999999999999999999999999999999999974
No 14
>KOG2651|consensus
Probab=98.89 E-value=1.2e-09 Score=122.43 Aligned_cols=55 Identities=33% Similarity=0.500 Sum_probs=46.9
Q ss_pred cCCChhhHHHHHhhhcc--chhHHHHHHHHHHhHhHHHHHHHHHHHhHHhhhcCCCC
Q psy9966 1044 TQVDDEEVTRLFDSHQR--EYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQQKPQ 1098 (1101)
Q Consensus 1044 ~~V~d~~ve~lfd~~~s--~~~~vv~f~~l~~~~ap~~e~~il~dr~~~l~e~~~~~ 1098 (1101)
.+++....+.++..+-+ +.+++++||+||++|||+|||+|||||++||||||++.
T Consensus 396 skl~~~ip~n~~~~~~~~ar~n~~~af~~Lr~~laP~iETlILlDRl~yLqEqgi~s 452 (476)
T KOG2651|consen 396 SKLDPQIPLNLAALQAHLARENRVVAFFSLRLLLAPLIETLILLDRLLYLQEQGIHS 452 (476)
T ss_pred hhcChhcchhHHHhhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34566666666665655 99999999999999999999999999999999999764
No 15
>PF11718 CPSF73-100_C: Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; InterPro: IPR021718 This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins. The exact function of this domain is not known.
Probab=98.15 E-value=1.4e-05 Score=86.60 Aligned_cols=107 Identities=18% Similarity=0.308 Sum_probs=82.2
Q ss_pred ccceeEEEEeeCCceeeechhhhhhhcCceeEEEEEEeeeecCCCccccccHHHHHHHHHHhccCCCCCceEEEecC--e
Q psy9966 316 ERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDSSPINKTLELIYDQLLSYLQDKSQEYKIQLTES--S 393 (1101)
Q Consensus 316 ~~~~~G~Lv~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~--~ 393 (1101)
+..++|+||.+||+|+||+|+|+.++++|++.++++++.++++. ++..++++|+++++ +..+-..+. .
T Consensus 2 G~~vsGvLV~~~f~~~lm~p~DL~~yt~L~ts~i~Qrq~i~~~~------~~~ll~~~L~~~fg----~ve~~~~~~~~~ 71 (216)
T PF11718_consen 2 GQQVSGVLVKKDFDYHLMAPDDLREYTDLSTSTITQRQSIPFNG------SFSLLRWHLEQMFG----DVEEIEDDEGKP 71 (216)
T ss_pred CcEEEEEEEecCCcccEEcHHHHhhcCCeeeeEEEEEEEEEeCC------CHHHHHHHHHHhhC----ceEEeecCCCce
Confidence 56799999999999999999999999999999999888876443 46789999999987 443333222 1
Q ss_pred -E-EEEEEEEEEeecCCCCeEEEEEcCCC--chhHHHHHHHHHHhhc
Q psy9966 394 -L-SIDSVLLSVERIDDKNKRVFVTWPNQ--DEEVGKIVLHVLKSMS 436 (1101)
Q Consensus 394 -~-~~~~v~i~v~~~~~~~~~~~~~W~~~--~e~l~~~~~~~~~~~~ 436 (1101)
+ -...|.|.++.+ ..+.++|..+ +..++--+..+|++.-
T Consensus 72 ~l~V~~~V~v~~~~~----~~v~lEW~s~~~nDmiADsv~a~il~~~ 114 (216)
T PF11718_consen 72 TLRVMGCVTVTYDPN----EEVVLEWESSPVNDMIADSVVAVILQID 114 (216)
T ss_pred EEEEeeeEEEEEeCC----cEEEEEEcCCcchhHHHHHHHHHHHHHh
Confidence 2 338899999733 2799999875 4567777777777654
No 16
>KOG1361|consensus
Probab=98.10 E-value=4.4e-05 Score=90.15 Aligned_cols=216 Identities=15% Similarity=0.192 Sum_probs=127.3
Q ss_pred CEEEEEC-CEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHhCCCe--EEE
Q psy9966 1 MFQVKVG-NQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTI--RDSKRCRERDFLKKVHECVDRGGK--VLI 75 (1101)
Q Consensus 1 Mf~Ie~~-g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~~--~~~r~~rE~~f~~~I~etl~~GG~--VLI 75 (1101)
||+.+.. |..|+|||||+..++..-.++......+|.|..|.||-++. .+++.+......+.|......+-+ ++|
T Consensus 188 mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~esvq~v~~~i~~~~~~~~~~Li~v 267 (481)
T KOG1361|consen 188 MFLFELSFGPCILHTGDFRASADMSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEESVQEVVDVIRSHASKNDRVLIVV 267 (481)
T ss_pred EEEeecCCCceEEecCCcccChhhhhChHHhcCCccceEEEeecccCCCCCCccHHHHHHHHHHHHHhhhhhCCceEEEE
Confidence 7777764 45999999999987665555555557899999999999985 456667777777777766655433 568
Q ss_pred eecchhHHHHHHHHHHHHHHhcCCCccEEEeChHHHHHHHHHHHhHhhhhHHHHHhhhhcCCCcCCCccccCccccCCCC
Q psy9966 76 PVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPG 155 (1101)
Q Consensus 76 PvFAlGRaQELl~iL~~~w~~~~~~vPIy~~s~la~k~~~vy~~~~~~ln~~i~~~f~~~npF~fk~i~~~~~~~~~~~g 155 (1101)
++|.+|+--=++.+.... +.||++. +.-..+++. ++ |-. + ++.+. .+..+
T Consensus 268 ~~ysiGkE~l~~eia~~l------~~kI~v~-~~~~~~~~~---lg-~~d-----------~--~~~~s------~d~~~ 317 (481)
T KOG1361|consen 268 GTYSIGKEKLLLEIARIL------NSKIWVE-PRRLRLLQC---LG-FDD-----------E--SKLLS------IDVDE 317 (481)
T ss_pred EEEecchhHHHHHHHHHh------CCceEEe-hhhchhhhh---cC-CCC-----------h--hhhhc------ccccc
Confidence 899999987666666554 6889985 322222221 11 110 0 00011 11233
Q ss_pred CeEEEEcCCCCCC-chHHHHHHHhCCCCCC---eEEEecccCCCcchhhhhcCcce-EEecCCeeEEEeeEEEEEecccC
Q psy9966 156 PMVVFATPGMLHS-GLSLIIFKKWAPVENN---MLIMPGFCVQGTIGHKVLSGVKK-LEFENKQIIDVKMAIEYMSFSAH 230 (1101)
Q Consensus 156 p~VViaspGmL~~-G~s~~~~~~w~~d~~N---~VI~tGy~~~GT~g~~Ll~g~k~-i~l~~g~~i~v~~~V~~i~fSaH 230 (1101)
-+|-+++-..+.. -...++.. ...+... +++.|||.-.. +++..+. .+...|. ++.+..+++|-|
T Consensus 318 ssvhv~~~~~l~~~~~l~~~~~-~~~~~~s~~v~~~~tgwt~~~-----~~s~~~~~~~~~~~~----~i~~~~vpYseH 387 (481)
T KOG1361|consen 318 SSVHVVPMNSLASSPSLKEYES-QYEDGYSKLVGFSPTGWTKGK-----LVSLDKENSRPQSGS----KIPISLVPYSEH 387 (481)
T ss_pred CceeEeehhhhccccchhhhhc-ccccCcceeEeeccccccccc-----ccccCcccccccccc----cccccccccccc
Confidence 3444444333331 11112111 1112222 22335553222 1211110 0111121 456667899999
Q ss_pred CCHHHHHHHHHHhCCCEEEEecCChh
Q psy9966 231 ADAKGIMQLIQYCEPKNVLLVHGEAS 256 (1101)
Q Consensus 231 AD~~~l~~~I~~l~Pk~VILVHGe~~ 256 (1101)
..+.++.+|++.++|+.||+.=++..
T Consensus 388 Ss~~el~~f~~~lk~k~iiptv~~~~ 413 (481)
T KOG1361|consen 388 SSYTELSEFLSKLKPKTIIPTVNEDT 413 (481)
T ss_pred CCHHHHHHHHHhcCCCeeecCccCCc
Confidence 99999999999999999999988754
No 17
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=97.68 E-value=0.00019 Score=79.83 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=38.5
Q ss_pred CCceEEEEEecCcchhHHHHHHHHhc--------CCceEEEecccccchhhhhh
Q psy9966 827 LHNVCIMGLHTCGDLSGTALRLFTKS--------SLQCLVQVGCCYHLLEEEFI 872 (1101)
Q Consensus 827 ~~~~~lvgLHaCGdLs~~~Lr~f~~~--------~~~~l~~VgCCYhllte~~~ 872 (1101)
..+.++||=|-||.-+.-.||...+. .++++++++||-|+-+-..|
T Consensus 97 ~~~vv~isKHLCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~CCHH~C~~~~y 150 (259)
T PF05206_consen 97 EKPVVAISKHLCGAATDLALRCLLNSQKLSEGNGSVRGIVIAPCCHHRCDWDSY 150 (259)
T ss_pred CCcEEEEEccccccchhHHHHhhccCccccccCCccCeEEEEeCCCCcCCHHHh
Confidence 35789999999999999999977642 27899999999999876544
No 18
>KOG2811|consensus
Probab=97.01 E-value=0.0015 Score=74.37 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=33.2
Q ss_pred CceEEEEEecCcchhHHHHHHHHh------cCCceEEEecccccchh
Q psy9966 828 HNVCIMGLHTCGDLSGTALRLFTK------SSLQCLVQVGCCYHLLE 868 (1101)
Q Consensus 828 ~~~~lvgLHaCGdLs~~~Lr~f~~------~~~~~l~~VgCCYhllt 868 (1101)
-+.+.+|=|-||--+.-.||-..+ +.++++++..||-|+=.
T Consensus 259 ~p~vaisKHLCG~ATDLtLRCl~~s~~~~~p~l~~i~IAlCCHH~c~ 305 (420)
T KOG2811|consen 259 KPYVAISKHLCGAATDLTLRCLLSSGDASSPVLAGILIALCCHHRCR 305 (420)
T ss_pred CcEEEEecccccchhhhHHHHhccCccccccchhhHHHHHhhccccc
Confidence 358999999999999999996654 23477999999999744
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.70 E-value=0.0018 Score=61.72 Aligned_cols=42 Identities=31% Similarity=0.412 Sum_probs=37.2
Q ss_pred CeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHHHh
Q psy9966 691 SHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
..|+|+|||.|.++..|+.. ++.+|+|||.++..++-|+++.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 47999999999999999973 8999999999999887776555
No 20
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.34 E-value=0.01 Score=62.71 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=33.5
Q ss_pred CCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~ 729 (1101)
..+|+|+|||.|++|..||... +.+|+|||.++..++-|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~ 83 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR 83 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH
Confidence 5689999999999999998654 679999999987665554
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.29 E-value=0.0051 Score=62.62 Aligned_cols=43 Identities=33% Similarity=0.424 Sum_probs=35.6
Q ss_pred CCeEEEEcCccchHhHHHHh--cCCCeEEEEeCCccccchHHHHh
Q psy9966 690 SSHIIDLGGGQGYLSTILAL--QHGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~--~~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
...|+|+|||.|+++..|+. .++.+|+|||.++..+.-|+.+.
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~ 48 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRA 48 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccc
Confidence 45899999999999999993 35899999999999887776544
No 22
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.0061 Score=68.49 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=43.1
Q ss_pred HHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHhh
Q psy9966 683 AVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRSK 733 (1101)
Q Consensus 683 ~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~~ 733 (1101)
......+..+|+|||||-|-|++.+|-.||.+|+||+.+++...-|++|-+
T Consensus 66 ~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~ 116 (283)
T COG2230 66 EKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIA 116 (283)
T ss_pred HhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHH
Confidence 333445567999999999999999999999999999999998877776554
No 23
>PRK04148 hypothetical protein; Provisional
Probab=96.16 E-value=0.0084 Score=60.35 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCccch-HhHHHHhcCCCeEEEEeCCccccchH
Q psy9966 676 VMSQVVAAVTNSCDSSHIIDLGGGQGY-LSTILALQHGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 676 ~~s~~v~~l~~~~~~~~vVD~GsGkGy-Lsr~La~~~~~~V~~IE~~~~~~~gA 728 (1101)
.++++++.-........|+|+|+|.|. ++..|+ +.|..|+|||.++..++.|
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a 55 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKA 55 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHH
Confidence 355666664444445689999999996 999999 6799999999998865444
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.15 E-value=0.0047 Score=65.92 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=33.1
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|+++..||. .|.+|+|+|.++..+..|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~ 69 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL-AGYDVRAWDHNPASIASVL 69 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH-CCCeEEEEECCHHHHHHHH
Confidence 35899999999999999995 5889999999987665554
No 25
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.92 E-value=0.008 Score=67.72 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=36.4
Q ss_pred HHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHhh
Q psy9966 682 AAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRSK 733 (1101)
Q Consensus 682 ~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~~ 733 (1101)
...+.-.+..+|+|+|||-|-++..+|..||.+|+||..++....-|+++.+
T Consensus 55 ~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~ 106 (273)
T PF02353_consen 55 CEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIR 106 (273)
T ss_dssp HTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHH
Confidence 3333444567999999999999999999999999999999887766665544
No 26
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.89 E-value=0.015 Score=61.93 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=35.0
Q ss_pred CCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||.|+++..+|.. ++.+|+|||.++..++-|+.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~ 87 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE 87 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH
Confidence 458999999999999999964 57899999999887766654
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.85 E-value=0.012 Score=65.19 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=40.2
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHh
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
++++.+.. ....|+|+|||.|+++..||. .|.+|+|+|.++..+..|+++.
T Consensus 36 ~~l~~l~~--~~~~vLDiGcG~G~~a~~la~-~g~~v~~vD~s~~~l~~a~~~~ 86 (255)
T PRK11036 36 RLLAELPP--RPLRVLDAGGGEGQTAIKLAE-LGHQVILCDLSAEMIQRAKQAA 86 (255)
T ss_pred HHHHhcCC--CCCEEEEeCCCchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHH
Confidence 45555542 235899999999999999995 5899999999998887776543
No 28
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.81 E-value=0.017 Score=62.26 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHH
Q psy9966 673 EVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 673 EV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~ 730 (1101)
+++.+..++..+. ....|+|+|||.|+++..|+.. .+.+|+|||.++..++.|++
T Consensus 30 ~~~~~~~~l~~~~---~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~ 85 (204)
T TIGR03587 30 KLAMFARALNRLP---KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKA 85 (204)
T ss_pred HHHHHHHHHHhcC---CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHh
Confidence 4444444444433 3457999999999999999865 47899999999987766643
No 29
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.81 E-value=0.013 Score=59.25 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=39.6
Q ss_pred HHHHHHHHHhc-cCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcccc
Q psy9966 676 VMSQVVAAVTN-SCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725 (1101)
Q Consensus 676 ~~s~~v~~l~~-~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~ 725 (1101)
.+++++..+.. ......|+|+|||.|.+++.|+ ..|.+|+|+|.++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~~g~D~~~~~~ 57 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALA-KRGFEVTGVDISPQMI 57 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHH-HTTSEEEEEESSHHHH
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHH-HhCCEEEEEECCHHHH
Confidence 45677777774 4456799999999999999996 5688999999997644
No 30
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.76 E-value=0.0087 Score=65.38 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=35.6
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||.|-||..|| .-|..|+|||.++.+++-|+.
T Consensus 60 g~~vLDvGCGgG~Lse~mA-r~Ga~VtgiD~se~~I~~Ak~ 99 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKL 99 (243)
T ss_pred CCeEEEecCCccHhhHHHH-HCCCeeEEecCChHHHHHHHH
Confidence 3589999999999999999 568999999999999877753
No 31
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.58 E-value=0.027 Score=60.97 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=35.4
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r 731 (1101)
...+|+|+|||.|.++..|+. .+.+|+|+|.++..+..|+++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~-~~~~v~gvD~s~~~i~~a~~~ 96 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAK-RGAIVKAVDISEQMVQMARNR 96 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHH
Confidence 456899999999999999985 578999999998877666543
No 32
>PLN02244 tocopherol O-methyltransferase
Probab=95.55 E-value=0.021 Score=66.31 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=35.6
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
....|+|+|||.|.+++.|+-.++.+|+|||.++..+..|++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~ 159 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA 159 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence 346899999999999999998789999999999876655543
No 33
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.54 E-value=0.018 Score=59.95 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|.|++.|+.. +.+|+++|.++.....++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~ 52 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLR 52 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHH
Confidence 458999999999999999965 789999999987654443
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.54 E-value=0.019 Score=61.33 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=33.2
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|+++..||. .|.+|+|+|.++..++.|+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~-~g~~V~gvD~S~~~i~~a~ 69 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAA-NGFDVTAWDKNPMSIANLE 69 (197)
T ss_pred CCcEEEECCCCCHHHHHHHH-CCCEEEEEeCCHHHHHHHH
Confidence 35899999999999999994 5889999999987665554
No 35
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.52 E-value=0.023 Score=61.43 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=35.8
Q ss_pred CCCCeEEEEcCccchHhHHHHhcCC--CeEEEEeCCccccchHHHH
Q psy9966 688 CDSSHIIDLGGGQGYLSTILALQHG--KKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 688 ~~~~~vVD~GsGkGyLsr~La~~~~--~~V~~IE~~~~~~~gA~~r 731 (1101)
.....|+|+|||.||++..||...+ -+|++||.++.....|+++
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~ 121 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERR 121 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 3456899999999999999997643 4799999999887766544
No 36
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.51 E-value=0.027 Score=59.51 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=34.5
Q ss_pred CCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~ 729 (1101)
....|+|+|||.|+++..++..+ +.+|+++|.++..++.|+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~ 72 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIK 72 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 45689999999999999999764 689999999987666654
No 37
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.50 E-value=0.024 Score=61.47 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHHH
Q psy9966 688 CDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 688 ~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~r 731 (1101)
.....|+|+|||.||++..||... +.+|+|+|.++.....|+++
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~ 120 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT 120 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 345689999999999999999654 46999999999877666543
No 38
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.50 E-value=0.022 Score=63.50 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=33.8
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
....|+|+|||.|+|+..|+.. +.+|+|||.++...+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~ 68 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLR 68 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHH
Confidence 4568999999999999999965 779999999987665554
No 39
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=95.48 E-value=0.038 Score=63.53 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=48.0
Q ss_pred hHHHHHHHhhhccCccccchhhccCCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeC
Q psy9966 641 VDELFSKLQARKCGLVVESAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDY 720 (1101)
Q Consensus 641 ~~~l~~~l~~~~~~~~~~~~~~~~~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~ 720 (1101)
++.+|..|.+...+. ..+-+-+.+--+..=-....++..+... ....|+|+|||.||++..++......|+|||.
T Consensus 78 l~~~l~~l~p~~~~~----~~l~~~~~~~e~~s~~~~~~~l~~l~~~-~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDp 152 (314)
T TIGR00452 78 ILEEIMALMPWRKGP----FELSGIKIDSEWRSDIKWDRVLPHLSPL-KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDP 152 (314)
T ss_pred HHHHHHhcCCCCCCC----cccccccCCHHHHHHHHHHHHHHhcCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcC
Confidence 455566666554432 2343333333222111122344443322 24689999999999998888654458999999
Q ss_pred Cccccch
Q psy9966 721 NQVNTHG 727 (1101)
Q Consensus 721 ~~~~~~g 727 (1101)
++.....
T Consensus 153 S~~ml~q 159 (314)
T TIGR00452 153 TVLFLCQ 159 (314)
T ss_pred CHHHHHH
Confidence 9865543
No 40
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.44 E-value=0.023 Score=63.95 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
....|+|+|||.|.+++.|+.. +.+|+|+|.++..++.|+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~ 81 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILA 81 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHH
Confidence 3468999999999999999966 459999999988766554
No 41
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.42 E-value=0.034 Score=53.61 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||-|+++..++... +.+|+|+|.++...+.|+.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 61 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER 61 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH
Confidence 4589999999999999999764 6899999999876655543
No 42
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.42 E-value=0.027 Score=60.65 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=34.3
Q ss_pred CCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~ 730 (1101)
....|+|+|||.||++..||... +-+|+|+|.++.....|++
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~ 115 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQ 115 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 34589999999999999999654 4699999999887766643
No 43
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=95.39 E-value=0.014 Score=62.69 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=42.3
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~r 731 (1101)
++++++... ....|+|+|||-|+.+..|+-.+ +..|+|||+++..++.|..|
T Consensus 21 dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r 73 (257)
T COG4106 21 DLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR 73 (257)
T ss_pred HHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh
Confidence 466666533 35689999999999999999884 78999999999988777543
No 44
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.30 E-value=0.028 Score=62.25 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=34.6
Q ss_pred CCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~ 729 (1101)
....|+|+|||.|.+++.|+..+ +.+|+|||.++..+..|+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~ 72 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEAR 72 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 35689999999999999999764 689999999987665554
No 45
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.27 E-value=0.029 Score=61.98 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=33.3
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
....|+|+|||-|.+++.|+. .+.+|+|+|.++..++.|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~ 81 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQAR 81 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHH
Confidence 356899999999999999984 5789999999987665443
No 46
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.25 E-value=0.037 Score=58.92 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=34.5
Q ss_pred CCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~ 730 (1101)
....|+|+|||.|+++..+|.. .+.+|++||.++..+..|++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~ 82 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR 82 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 3458999999999999999854 56899999999887765543
No 47
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=95.24 E-value=0.02 Score=52.13 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=31.3
Q ss_pred EEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHh
Q psy9966 694 IDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 694 VD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
+|+|||.|..+..|+...+.+|+|+|.++...+.|+++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~ 39 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRL 39 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHT
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcc
Confidence 699999999999999666999999999988776665444
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.21 E-value=0.031 Score=66.00 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHH
Q psy9966 672 YEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 672 hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r 731 (1101)
.+...+..++..+. .....+|+|+|||.|.++..+|..+|.+|+|||.++...+-|+++
T Consensus 151 Aq~~k~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~ 209 (383)
T PRK11705 151 AQEAKLDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQER 209 (383)
T ss_pred HHHHHHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 33344444444443 223458999999999999999988899999999998877666543
No 49
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=95.20 E-value=0.032 Score=64.41 Aligned_cols=40 Identities=33% Similarity=0.405 Sum_probs=34.7
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||-|+++..|| ..|.+|+|||.++..++-|+.
T Consensus 132 g~~ILDIGCG~G~~s~~La-~~g~~V~GID~s~~~i~~Ar~ 171 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLA-RMGATVTGVDAVDKNVKIARL 171 (322)
T ss_pred CCEEEEeeCCCCHHHHHHH-HcCCEEEEEeCCHHHHHHHHH
Confidence 3479999999999999998 578999999999988776654
No 50
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.20 E-value=0.028 Score=62.41 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=38.1
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~ 729 (1101)
.+++.+.. .....|+|+|||.|.+++.|+.. ++.+|+|+|.++..++.|+
T Consensus 20 ~ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~ 70 (255)
T PRK14103 20 DLLARVGA-ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR 70 (255)
T ss_pred HHHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 34444432 23468999999999999999976 4789999999987765553
No 51
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=95.17 E-value=0.11 Score=50.56 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHhCCCCCCeEEE--ecccCCCcchhhhhcCcceEEecCCeeEEEeeEEEEEecccCC
Q psy9966 154 PGPMVVFATPGMLHSGLSLIIFKKWAPVENNMLIM--PGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHA 231 (1101)
Q Consensus 154 ~gp~VViaspGmL~~G~s~~~~~~w~~d~~N~VI~--tGy~~~GT~g~~Ll~g~k~i~l~~g~~i~v~~~V~~i~fSaHA 231 (1101)
..-.|=+++-+.+.......+++...+...+.|.| |||.-..........-.+.. ...-+..+..+++|-|+
T Consensus 12 ~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~------~~~~~~~~~~VPYSeHS 85 (110)
T PF07522_consen 12 SETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSL------QSRGNVRIYRVPYSEHS 85 (110)
T ss_pred CCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCcccccccccc------ccCCCceEEEEecccCC
Confidence 34466666666666445555666666555665544 78644322111111000000 01113457789999999
Q ss_pred CHHHHHHHHHHhCCCEEEEe
Q psy9966 232 DAKGIMQLIQYCEPKNVLLV 251 (1101)
Q Consensus 232 D~~~l~~~I~~l~Pk~VILV 251 (1101)
.+.||.+|++.++|++||+.
T Consensus 86 Sf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 86 SFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred CHHHHHHHHHhcCCcEEEcc
Confidence 99999999999999999974
No 52
>PRK06202 hypothetical protein; Provisional
Probab=95.14 E-value=0.029 Score=61.31 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCccchHhHHHHh-----cCCCeEEEEeCCccccchHH
Q psy9966 688 CDSSHIIDLGGGQGYLSTILAL-----QHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 688 ~~~~~vVD~GsGkGyLsr~La~-----~~~~~V~~IE~~~~~~~gA~ 729 (1101)
.+...|+|+|||.|.+++.|+. .++.+|+|||.++..+..|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~ 105 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFAR 105 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH
Confidence 3456899999999999999984 23579999999987765553
No 53
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.09 E-value=0.037 Score=61.32 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=34.9
Q ss_pred CCeEEEEcCccchHhHHHHh---cCCCeEEEEeCCccccchHHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILAL---QHGKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~---~~~~~V~~IE~~~~~~~gA~~r 731 (1101)
..+|+|+|||.|.++..|+. .++.+|+|||.++..++.|+.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~ 101 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRH 101 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHH
Confidence 45899999999999998885 3589999999998877666543
No 54
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.95 E-value=0.038 Score=61.85 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=39.4
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
.+++.+. ......|+|+|||.|.+++.|+..++.+|+|+|.++..+..|++
T Consensus 43 ~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~ 93 (263)
T PTZ00098 43 KILSDIE-LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKL 93 (263)
T ss_pred HHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHH
Confidence 4555542 22345899999999999999997789999999999877665544
No 55
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.95 E-value=0.04 Score=61.25 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 688 CDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 688 ~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
.....|+|+|||.|.|++.|+... .+|+++|.++..++.|+
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~ 68 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILR 68 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHH
Confidence 345689999999999999999654 57999999987765554
No 56
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.95 E-value=0.046 Score=59.12 Aligned_cols=41 Identities=34% Similarity=0.382 Sum_probs=34.4
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r 731 (1101)
...|+|+|||.|++++.|+. .+.+|+|+|.++..+..|+++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~-~~~~v~~~D~s~~~i~~a~~~ 104 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLAR-RGAKVVASDISPQMVEEARER 104 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHH-cCCEEEEEECCHHHHHHHHHH
Confidence 45899999999999999984 577899999998877666543
No 57
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.88 E-value=0.046 Score=58.90 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=34.1
Q ss_pred cCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 687 SCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 687 ~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
..+...|+|+|||.||++..||... .+|++||.++..+..|++
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~ 118 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKR 118 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHH
Confidence 3345689999999999999888654 489999999877655543
No 58
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=94.82 E-value=0.065 Score=61.89 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=30.7
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTH 726 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~ 726 (1101)
...|+|+|||.||++..++......|+|||.++....
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~ 159 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLC 159 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 3689999999999999998765557999998876543
No 59
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.79 E-value=0.03 Score=63.38 Aligned_cols=38 Identities=37% Similarity=0.435 Sum_probs=32.5
Q ss_pred CeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 691 SHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
..|+|+|||.|.++..||. .|.+|+|+|.++..+..|+
T Consensus 122 ~~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~ai~~~~ 159 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLAL-LGFDVTAVDINQQSLENLQ 159 (287)
T ss_pred CCEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHH
Confidence 4899999999999999995 5899999999987665554
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=94.79 E-value=0.044 Score=57.40 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=33.3
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||.|+++..++.... +|+|+|.++...+.|+.
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~ 59 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRE 59 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHH
Confidence 35799999999999999996544 99999999887766543
No 61
>KOG1270|consensus
Probab=94.78 E-value=0.016 Score=63.89 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=35.8
Q ss_pred eEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHH
Q psy9966 692 HIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r 731 (1101)
.|+|+|||-|-||.-|| .+|..|+|||..+.+++-|++-
T Consensus 92 ~ilDvGCGgGLLSepLA-rlga~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 92 KILDVGCGGGLLSEPLA-RLGAQVTGIDASDDMVEVANEH 130 (282)
T ss_pred eEEEeccCccccchhhH-hhCCeeEeecccHHHHHHHHHh
Confidence 49999999999999999 7899999999999999888654
No 62
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=94.72 E-value=0.057 Score=59.29 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=34.1
Q ss_pred CCeEEEEcCccchHhHHHHhc---CCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ---HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~---~~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||.|.++..|+.. ++.+|+|+|.++..+..|++
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~ 97 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQ 97 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHH
Confidence 358999999999999999864 48899999999877766643
No 63
>PRK05785 hypothetical protein; Provisional
Probab=94.67 E-value=0.047 Score=59.80 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=34.4
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|.+++.|+...+.+|+|||.++..++.|.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL 91 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH
Confidence 3589999999999999999766789999999988776654
No 64
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=94.62 E-value=0.06 Score=56.15 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=33.3
Q ss_pred CCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA 728 (1101)
....|+|+|||-|.+|..|+... ..+|+++|.|+..++.|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a 71 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELA 71 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHH
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 45589999999999999999764 55899999998766554
No 65
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=94.56 E-value=0.051 Score=61.93 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=34.6
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
....|+|+|||.|+|++.|+. .+.+|+|||.++..+..|++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~-~~~~V~avEiD~~li~~l~~ 76 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQ-LAKKVIAIEIDPRMVAELKK 76 (294)
T ss_pred CcCEEEEecCchHHHHHHHHH-hCCcEEEEECCHHHHHHHHH
Confidence 446899999999999999985 46789999999987766654
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=94.56 E-value=0.083 Score=57.53 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=37.8
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
+++...........|+|+|||.|.++..++. .+.+|+++|.++.....|.+
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~ 88 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARL 88 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHH
Confidence 3444444333456899999999999998885 58899999999876655543
No 67
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=94.55 E-value=0.061 Score=61.45 Aligned_cols=61 Identities=11% Similarity=0.233 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhccCC-CCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHHH
Q psy9966 671 SYEVQVMSQVVAAVTNSCD-SSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 671 ~hEV~~~s~~v~~l~~~~~-~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~r 731 (1101)
+.|.+.+....+.++...+ ...|||+|||-|..++.|+... +.+|+|||.++...+.|.++
T Consensus 44 r~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~ 107 (301)
T TIGR03438 44 RTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAA 107 (301)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHH
Confidence 4566666666666664332 3589999999999999998664 68999999999877666543
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.50 E-value=0.064 Score=60.91 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=40.8
Q ss_pred HHHHHHHH-HHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 671 SYEVQVMS-QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 671 ~hEV~~~s-~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
.|+..+|. +.+..+.. ....|+|+|||.|+|+..++.....+|+|+|.++..+..|++
T Consensus 142 ~h~tt~l~l~~l~~~~~--~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDL--KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred CCHHHHHHHHHHHhhcC--CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH
Confidence 56665543 23333322 236899999999999999886444699999999887766643
No 69
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=94.40 E-value=0.046 Score=58.10 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=32.6
Q ss_pred CeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchH
Q psy9966 691 SHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA 728 (1101)
..|+|+|||.|.++..|+..++..++|||.++.....|
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLAC 52 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHH
Confidence 48999999999999999877788999999997755444
No 70
>PRK14968 putative methyltransferase; Provisional
Probab=94.36 E-value=0.064 Score=55.92 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=34.3
Q ss_pred CCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 688 CDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 688 ~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
.+...|+|+|||.|+++..|+.. +.+|+|+|.++.....|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~ 62 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAK 62 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHH
Confidence 34558999999999999999976 899999999987665553
No 71
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.28 E-value=0.093 Score=56.05 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhc--CCCeEEEEeCCccccchHHHH
Q psy9966 672 YEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ--HGKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 672 hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~--~~~~V~~IE~~~~~~~gA~~r 731 (1101)
+||..++ +..+. ......|+|+|||.|+++..+|.. .+.+|++||.++...+.|++.
T Consensus 26 ~~~r~~~--l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 26 EEIRALA--LSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred HHHHHHH--HHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 4665433 33332 223458999999999999998864 457999999998877665543
No 72
>PHA03411 putative methyltransferase; Provisional
Probab=94.22 E-value=0.12 Score=58.11 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=52.6
Q ss_pred chHHHHHHHhhhccCccccchhhccCCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcC-CCeEEEE
Q psy9966 640 TVDELFSKLQARKCGLVVESAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH-GKKTLSL 718 (1101)
Q Consensus 640 ~~~~l~~~l~~~~~~~~~~~~~~~~~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~I 718 (1101)
+-|.+...++|+. .. ..-+|++|+..- . .++. .......|+|+|||.|-++..++... +.+|+||
T Consensus 29 ~~~~v~~~~~g~~--~~----~~G~FfTP~~i~--~---~f~~---~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gV 94 (279)
T PHA03411 29 EKEFCYNNYHGDG--LG----GSGAFFTPEGLA--W---DFTI---DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCV 94 (279)
T ss_pred cHHHHHHhccccc--cc----CceeEcCCHHHH--H---HHHh---ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEE
Confidence 6778899999885 11 246677777431 1 1221 12223489999999999999888654 6899999
Q ss_pred eCCccccchHH
Q psy9966 719 DYNQVNTHGAA 729 (1101)
Q Consensus 719 E~~~~~~~gA~ 729 (1101)
|.++..+.-|+
T Consensus 95 Disp~al~~Ar 105 (279)
T PHA03411 95 ELNPEFARIGK 105 (279)
T ss_pred ECCHHHHHHHH
Confidence 99987665554
No 73
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=94.14 E-value=0.063 Score=57.42 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA 728 (1101)
...++|+|||.|--|..|| +.|..|+|+|.++.-++.+
T Consensus 31 ~g~~LDlgcG~GRNalyLA-~~G~~VtAvD~s~~al~~l 68 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLA-SQGFDVTAVDISPVALEKL 68 (192)
T ss_dssp SSEEEEES-TTSHHHHHHH-HTT-EEEEEESSHHHHHHH
T ss_pred CCcEEEcCCCCcHHHHHHH-HCCCeEEEEECCHHHHHHH
Confidence 4589999999999999999 5799999999998655443
No 74
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.10 E-value=0.089 Score=58.86 Aligned_cols=43 Identities=28% Similarity=0.384 Sum_probs=35.7
Q ss_pred CCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~r 731 (1101)
....|+|+|||.|+++..|+... +.+|+|||.++..++.|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r 117 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASR 117 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 34689999999999999999764 36999999999888777544
No 75
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.04 E-value=0.096 Score=58.15 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=32.8
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
....|+|+|||.|+|+..++.....+|+|+|.++..++.|++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~ 160 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARE 160 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH
Confidence 346899999999999998775333359999999887766643
No 76
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=94.02 E-value=0.058 Score=57.95 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~r 731 (1101)
...|+|+|||.|+++..||.. .+.+|+|||.++..+..|.+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~ 83 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKK 83 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHH
Confidence 458999999999999999866 467999999999887766543
No 77
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=93.99 E-value=0.089 Score=60.47 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=34.0
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|.++..||. .+.+|+|||.++..++.|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~ 212 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAK 212 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHH
Confidence 46899999999999999995 6789999999988776664
No 78
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=93.95 E-value=0.085 Score=59.25 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=31.9
Q ss_pred CCeEEEEcCccchHhHHHHhcC----CCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH----GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~----~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.||+++.|+... +..|+|||.++..+..|.
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~ 129 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA 129 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH
Confidence 3579999999999999998543 357999999987665554
No 79
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=93.92 E-value=0.077 Score=57.68 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=32.8
Q ss_pred CeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchH
Q psy9966 691 SHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA 728 (1101)
.+|+|+|||.|+-+..|| ..|..|+|||.++.-++.|
T Consensus 36 ~rvLd~GCG~G~da~~LA-~~G~~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLA-EQGHRVLGVELSEIAVEQF 72 (213)
T ss_pred CeEEEeCCCchhHHHHHH-hCCCeEEEEeCCHHHHHHH
Confidence 489999999999999999 5799999999998766544
No 80
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.91 E-value=0.088 Score=57.14 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=35.4
Q ss_pred CCCeEEEEcCccchHhHHHHhcCC--CeEEEEeCCccccchHHHHhh
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHG--KKTLSLDYNQVNTHGAAVRSK 733 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~--~~V~~IE~~~~~~~gA~~r~~ 733 (1101)
....|+|+|+|.||++-.||.--| -.|++||.++.+.+.|+++-.
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~ 118 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLA 118 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHH
Confidence 346899999999999999997544 379999999998888865543
No 81
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=93.91 E-value=0.09 Score=57.11 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=33.0
Q ss_pred CCeEEEEcCccchHhHHHHhc--CCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ--HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~--~~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|.+++.|+.. .+.+|+|+|.++..+.-|+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR 87 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 458999999999999999965 3579999999987654443
No 82
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=93.88 E-value=0.076 Score=58.84 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=43.8
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~ 729 (1101)
-++++.+.......|+|+|||-|-+|-+||..+ ..+|+|||.++...+-|+
T Consensus 34 iLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~ 85 (248)
T COG4123 34 ILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQ 85 (248)
T ss_pred HHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHH
Confidence 467777766667899999999999999999884 599999999998887775
No 83
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=93.87 E-value=0.061 Score=58.17 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=34.4
Q ss_pred CeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHHH
Q psy9966 691 SHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~r 731 (1101)
+.|+|+|||.|.+++.++..+ +.+|+|+|.++.....|+.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~ 42 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRER 42 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 369999999999999999776 68999999998776666543
No 84
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=93.76 E-value=0.087 Score=57.49 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=32.6
Q ss_pred CeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchH
Q psy9966 691 SHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA 728 (1101)
..|+|+|||.|+-+..|| +.|.+|+|||.++.-++.|
T Consensus 39 ~rvL~~gCG~G~da~~LA-~~G~~V~avD~s~~Ai~~~ 75 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLA-EQGHEVLGVELSELAVEQF 75 (218)
T ss_pred CeEEEeCCCChHhHHHHH-hCCCeEEEEccCHHHHHHH
Confidence 489999999999999999 6899999999998766544
No 85
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=93.64 E-value=0.11 Score=55.98 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=32.0
Q ss_pred CCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA 728 (1101)
...|+|+|||.|+++..|+... +.+|+++|.++.....|
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 74 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA 74 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH
Confidence 4589999999999999999663 57899999987755444
No 86
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=93.55 E-value=0.13 Score=59.31 Aligned_cols=42 Identities=29% Similarity=0.330 Sum_probs=35.7
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHh
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
...|+|+|||.|.++..|+. .|.+|+|+|.++..++-|+++.
T Consensus 145 ~~~VLDlGcGtG~~a~~la~-~g~~V~gvD~S~~ml~~A~~~~ 186 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLAL-EGAIVSASDISAAMVAEAERRA 186 (315)
T ss_pred CCEEEEecCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHH
Confidence 35899999999999999994 5899999999998877666543
No 87
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.37 E-value=0.1 Score=55.54 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=38.5
Q ss_pred HHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
+|++.... ...|+|+|||-|-|-..|....+..++|||.++.++..+.
T Consensus 6 ~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv 53 (193)
T PF07021_consen 6 IIAEWIEP--GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV 53 (193)
T ss_pred HHHHHcCC--CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH
Confidence 34444433 3589999999999999999889999999999998775543
No 88
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=93.37 E-value=0.023 Score=53.29 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=30.7
Q ss_pred EEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHHHh
Q psy9966 694 IDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 694 VD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
+|+|||.|.++..|... .+.+++|+|.++...+.|++|-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~ 40 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERL 40 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCH
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh
Confidence 69999999999999976 5899999999999886664443
No 89
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.33 E-value=0.12 Score=62.70 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|.++..||..++.+|+|+|.++.....|+
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~ 306 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFAL 306 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHH
Confidence 4589999999999999999878999999999987665554
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=93.28 E-value=0.12 Score=56.40 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 673 EVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 673 EV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
+.+.++..+....- .....|+|+|||.|+++..++.....+|+++|.++.....|+
T Consensus 21 ds~~l~~~l~~~~~-~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~ 76 (223)
T PRK14967 21 DTQLLADALAAEGL-GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR 76 (223)
T ss_pred cHHHHHHHHHhccc-CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH
Confidence 34445555554321 223589999999999999999653349999999987665554
No 91
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=93.27 E-value=0.11 Score=49.96 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=34.9
Q ss_pred CeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHH
Q psy9966 691 SHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r 731 (1101)
..|+|.|||.|.++..++.....+|+|+|.|+..++-|+..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~ 42 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRN 42 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHH
Confidence 37999999999999999966569999999999887766543
No 92
>PHA03412 putative methyltransferase; Provisional
Probab=93.22 E-value=0.19 Score=55.51 Aligned_cols=68 Identities=15% Similarity=0.330 Sum_probs=46.9
Q ss_pred CccccchhhccCCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhc----CCCeEEEEeCCccccchHH
Q psy9966 654 GLVVESAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ----HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 654 ~~~~~~~~~~~~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~----~~~~V~~IE~~~~~~~gA~ 729 (1101)
+......+.-++++|+= ++..+. + .......|+|+|||.|.|+-.++.. ....|+|||.|+...+-|+
T Consensus 22 ~~~~~~~~~GqFfTP~~------iAr~~~-i-~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar 93 (241)
T PHA03412 22 GAFTNNSELGAFFTPIG------LARDFT-I-DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK 93 (241)
T ss_pred ccccccccCCccCCCHH------HHHHHH-H-hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH
Confidence 34445567888999972 222221 1 1222458999999999999999864 3579999999987665554
No 93
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=93.21 E-value=0.16 Score=57.57 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=35.2
Q ss_pred CCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||.|.++..||... +.+|+|+|.++..+..|++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~ 163 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI 163 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 4589999999999999999764 7899999999887766653
No 94
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.21 E-value=0.15 Score=58.48 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=35.4
Q ss_pred CeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHHH
Q psy9966 691 SHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~r 731 (1101)
..|+|+|||.|.++..|+..+ +.+|+|+|.++..+..|+..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n 176 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN 176 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 589999999999999999774 78999999999877766543
No 95
>PRK08317 hypothetical protein; Provisional
Probab=93.07 E-value=0.18 Score=54.18 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHH
Q psy9966 688 CDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 688 ~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~ 729 (1101)
.....|+|+|||.|.++..++..+ +.+|+|+|.++.....|+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~ 61 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAK 61 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence 345689999999999999999765 579999999987665554
No 96
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=93.05 E-value=0.16 Score=56.49 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcc-CCCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHH
Q psy9966 673 EVQVMSQVVAAVTNS-CDSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 673 EV~~~s~~v~~l~~~-~~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~ 729 (1101)
+-+.+.+.+...... .+...|+|+|||.|.++..|+.. .+.+|+|+|.|+..++.|+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~ 127 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCAR 127 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 556666655444332 23347999999999999999966 4689999999988776554
No 97
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=93.02 E-value=0.1 Score=55.67 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=34.5
Q ss_pred CCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||.|.++..+|.. ++..|+|||.+...+..|.+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~ 58 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANN 58 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH
Confidence 347999999999999999976 47899999999887766543
No 98
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=92.95 E-value=0.098 Score=47.20 Aligned_cols=38 Identities=32% Similarity=0.441 Sum_probs=31.8
Q ss_pred eEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 692 HIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
.|+|+|||.|.++..++...+.+++++|.++.....++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 37999999999999999756889999999987655443
No 99
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.87 E-value=0.18 Score=58.17 Aligned_cols=41 Identities=22% Similarity=0.493 Sum_probs=34.2
Q ss_pred CCeEEEEcCccchHhHHHHhcCCC--eEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGK--KTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~--~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||.||++..+|...+. .|+|||.++..++.|++
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~ 123 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 123 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 458999999999999999976653 69999999987766653
No 100
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.76 E-value=0.16 Score=56.75 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=34.9
Q ss_pred CCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~ 730 (1101)
....|+|+|||.|.++..|+... +.+|+|+|.++..+..|+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~ 150 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARR 150 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 34589999999999999999764 6899999999876655543
No 101
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.19 Score=54.29 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=45.3
Q ss_pred cCCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHh
Q psy9966 664 QLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 664 ~~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
.|-+.-.-|-|-+|.++++ ......|++||+|.||.+-.||.--+ +|++||..+.+.+.|+++-
T Consensus 51 ~gqtis~P~~vA~m~~~L~----~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L 114 (209)
T COG2518 51 CGQTISAPHMVARMLQLLE----LKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNL 114 (209)
T ss_pred CCceecCcHHHHHHHHHhC----CCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHH
Confidence 3333334455554444333 33346899999999999999995445 9999999999998887543
No 102
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.65 E-value=0.12 Score=48.89 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=30.4
Q ss_pred EEEEcCccchHhHHHHhcC--C--CeEEEEeCCccccchHHHHh
Q psy9966 693 IIDLGGGQGYLSTILALQH--G--KKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 693 vVD~GsGkGyLsr~La~~~--~--~~V~~IE~~~~~~~gA~~r~ 732 (1101)
|+|+|||-|-..+.|+... + .+++|||.++..+.-|+++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~ 44 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF 44 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc
Confidence 7999999999999999654 4 89999999998876665444
No 103
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=92.61 E-value=0.22 Score=53.78 Aligned_cols=40 Identities=30% Similarity=0.366 Sum_probs=32.5
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
....|+|+|||.|+++..++. .+.+|+++|.++..+..|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~ 84 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAK 84 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHH
Confidence 356899999999999998885 5678999999987654443
No 104
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=92.53 E-value=0.23 Score=53.72 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=33.6
Q ss_pred CCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|.++..++... ..+|+++|.++.....|+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 93 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGR 93 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Confidence 4589999999999999999776 489999999987665554
No 105
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=92.49 E-value=0.19 Score=55.34 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=30.3
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcccc
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~ 725 (1101)
....|+|+|||.|+++..|+.....+|+|||.++...
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l 111 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQL 111 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 4568999999999999999965346899999987533
No 106
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.43 E-value=0.38 Score=51.14 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=51.7
Q ss_pred HHHHHHHhhhccCccccchhhccCCCcchHHHHHHHHHHHHHHhc---cCCCCeEEEEcCccchHhHHHHhcCCCeEEEE
Q psy9966 642 DELFSKLQARKCGLVVESAKVSQLMSEKKSYEVQVMSQVVAAVTN---SCDSSHIIDLGGGQGYLSTILALQHGKKTLSL 718 (1101)
Q Consensus 642 ~~l~~~l~~~~~~~~~~~~~~~~~mn~KK~hEV~~~s~~v~~l~~---~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~I 718 (1101)
|-+|..|++-...+ ..+-|-|+|- .+++.+...+. .-..+.|+|.|||.|-||-..++---..|+||
T Consensus 5 e~~l~kl~~f~~p~----~~LEQY~Tp~------~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~v 74 (198)
T COG2263 5 EILLEKLKGFPNPK----LGLEQYRTPA------PLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAV 74 (198)
T ss_pred hhhhhhhcCCCCCC----ccceecCCCh------HHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEE
Confidence 44555555544322 2455666654 23334433332 22356799999999999999986545899999
Q ss_pred eCCccccchHHH
Q psy9966 719 DYNQVNTHGAAV 730 (1101)
Q Consensus 719 E~~~~~~~gA~~ 730 (1101)
|.++..++-|+.
T Consensus 75 diD~~a~ei~r~ 86 (198)
T COG2263 75 DIDPEALEIARA 86 (198)
T ss_pred ecCHHHHHHHHH
Confidence 999998876653
No 107
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=92.41 E-value=0.19 Score=55.42 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=32.9
Q ss_pred CCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHHHhh
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAVRSK 733 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~r~~ 733 (1101)
....|+|+|||.|.+++.|+-.. +.+|+|+|.++....-|+++..
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~ 93 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK 93 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH
Confidence 34589999999999999999654 5799999999988877765543
No 108
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=92.38 E-value=0.17 Score=56.54 Aligned_cols=40 Identities=18% Similarity=0.449 Sum_probs=32.9
Q ss_pred hccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcccc
Q psy9966 685 TNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725 (1101)
Q Consensus 685 ~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~ 725 (1101)
+.......|||+|+|.|.|++.|+ +++.+|++||.++...
T Consensus 26 ~~~~~~~~VlEiGpG~G~lT~~L~-~~~~~v~~vE~d~~~~ 65 (262)
T PF00398_consen 26 LDLSEGDTVLEIGPGPGALTRELL-KRGKRVIAVEIDPDLA 65 (262)
T ss_dssp HTCGTTSEEEEESSTTSCCHHHHH-HHSSEEEEEESSHHHH
T ss_pred cCCCCCCEEEEeCCCCccchhhHh-cccCcceeecCcHhHH
Confidence 333356799999999999999997 5569999999997654
No 109
>PRK06922 hypothetical protein; Provisional
Probab=92.37 E-value=0.19 Score=62.47 Aligned_cols=41 Identities=17% Similarity=0.358 Sum_probs=34.9
Q ss_pred CCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||.|+++..||.. ++.+|+|+|.++..++.|+.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ara 460 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKK 460 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 458999999999999999965 58999999999887766643
No 110
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=92.32 E-value=0.23 Score=56.31 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=34.4
Q ss_pred CeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHH
Q psy9966 691 SHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~ 730 (1101)
..|+|+|||.|.++..|+... +.+|+|+|.++..+.-|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~ 156 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE 156 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 589999999999999999764 6899999999887766654
No 111
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=92.24 E-value=0.23 Score=55.49 Aligned_cols=35 Identities=14% Similarity=0.406 Sum_probs=30.9
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcccc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~ 725 (1101)
...|++||+|+|.|++.|+ +.+.+|++||.++.++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll-~~~~~v~aiEiD~~l~ 65 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLL-ERAARVTAIEIDRRLA 65 (259)
T ss_pred CCeEEEECCCCCHHHHHHH-hhcCeEEEEEeCHHHH
Confidence 5689999999999999999 5677899999997655
No 112
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=92.23 E-value=0.21 Score=58.13 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=32.7
Q ss_pred eEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHH
Q psy9966 692 HIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~ 729 (1101)
.|+|+|||-|+++..++.. ++.+|+++|.++..++.|+
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~ 237 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSR 237 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 7999999999999999976 4689999999987665554
No 113
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=92.21 E-value=0.24 Score=54.24 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=34.6
Q ss_pred CCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||.|+++..++..+ +.+|+|+|.++..++.|+.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~ 129 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK 129 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 3489999999999999999764 7799999999887766653
No 114
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=92.18 E-value=0.2 Score=55.17 Aligned_cols=52 Identities=12% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHHHHhccCCCCeEEEEcCccchHhHHHHhc--CCCeEEEEeCCccccchHH
Q psy9966 678 SQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ--HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 678 s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~--~~~~V~~IE~~~~~~~gA~ 729 (1101)
++++..++...+.+.|+|+|+|-||-+-.||.. .+-+|+++|.++...+-|+
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~ 110 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL 110 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 356666666667789999999999977766643 3579999999988765554
No 115
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=91.94 E-value=0.52 Score=53.21 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=54.7
Q ss_pred ECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCCCCCCh--hHHHHHHHHHHHHHHhCCCeEEEeecchhHH
Q psy9966 6 VGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSK--RCRERDFLKKVHECVDRGGKVLIPVFALGRA 83 (1101)
Q Consensus 6 ~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~~~~~r--~~rE~~f~~~I~etl~~GG~VLIPvFAlGRa 83 (1101)
..+++|+||||=...+. + ...++|+||+||||.+...... ...-.+..+.... ..+++.++--|+.-|-
T Consensus 179 ~~~~~vvysGDT~~~~~------~-~a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~--a~vk~LiLtH~Ssry~ 249 (277)
T TIGR02650 179 EHHKILLIIGDDLAADD------E-EEEGGEELIHECCFFDDADDRRKKHAAADDEMEESKK--AAGKKKIILHHISRRI 249 (277)
T ss_pred ccCcEEEEeCCCCCCCh------H-HhcCCCEEEEecccccccccccCCCCCHHHHHHHHHH--cCCCEEEEEeeccccc
Confidence 45689999999875421 1 1348999999999987532110 0111222222221 2456777777776666
Q ss_pred HHHH-HHHHHHHHhcCCCccEEEeCh
Q psy9966 84 QELC-ILLETYWERMNLQAPIYFAVG 108 (1101)
Q Consensus 84 QELl-~iL~~~w~~~~~~vPIy~~s~ 108 (1101)
.+++ .+++.+.++.+ .+||++..|
T Consensus 250 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 274 (277)
T TIGR02650 250 IRILKSIIKKREEEMD-DEEILMDDP 274 (277)
T ss_pred HHHHHHHHHHHHhhcC-ccceeccCC
Confidence 6665 55566544444 488988654
No 116
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=91.78 E-value=0.26 Score=53.06 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=31.1
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|.+|-.++.....+|++||.++..++-|+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 3589999999999998533344579999999987665543
No 117
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=91.78 E-value=0.31 Score=58.71 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=38.3
Q ss_pred HHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 677 MSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 677 ~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
|.+.+...........|+|+|||.|.++..||.. +.+|+|+|.++..+..|+
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~ 336 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERAR 336 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHH
Confidence 3333333333334468999999999999999954 579999999988776664
No 118
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=91.76 E-value=0.26 Score=58.63 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=34.6
Q ss_pred CeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHH
Q psy9966 691 SHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~ 730 (1101)
..|+|+|||.|.++..|+.. .+.+|+|+|.++..++.|++
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Are 293 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARK 293 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 48999999999999999975 57899999999887766654
No 119
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=91.72 E-value=0.25 Score=53.53 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=39.0
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCe-EEEEeCCccccchHHHHhhhhh
Q psy9966 676 VMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKK-TLSLDYNQVNTHGAAVRSKKLE 736 (1101)
Q Consensus 676 ~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~-V~~IE~~~~~~~gA~~r~~kl~ 736 (1101)
.|+.++..+ +-......+|+|||.|-+--..|+.++.+ ++|||..+.....|....+.++
T Consensus 30 ~~~~il~~~-~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~ 90 (205)
T PF08123_consen 30 FVSKILDEL-NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELK 90 (205)
T ss_dssp HHHHHHHHT-T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHH
Confidence 444555433 23334578999999999999999898886 9999999998777765444433
No 120
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.71 E-value=0.19 Score=60.97 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=33.7
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|+|||.|++++.|+.. +.+|+|||.++..+..|..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~ 77 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNES 77 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHH
Confidence 458999999999999999954 6799999999887765543
No 121
>PRK04266 fibrillarin; Provisional
Probab=91.62 E-value=0.29 Score=53.74 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHHH--hccCCCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccc
Q psy9966 679 QVVAAV--TNSCDSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTH 726 (1101)
Q Consensus 679 ~~v~~l--~~~~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~ 726 (1101)
.+++.+ ..-.....|+|+|||.|+++..||... +-+|+|+|.++...+
T Consensus 60 ~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~ 110 (226)
T PRK04266 60 AILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR 110 (226)
T ss_pred HHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 344444 333345689999999999999999765 358999999986443
No 122
>PRK04457 spermidine synthase; Provisional
Probab=91.53 E-value=0.32 Score=54.63 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=37.6
Q ss_pred cCCCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHHH
Q psy9966 687 SCDSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 687 ~~~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~r 731 (1101)
....+.|+|+|+|-|.+++.|+.. ++.+|++||.++..++-|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~ 109 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNH 109 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH
Confidence 344678999999999999999866 478999999999988777543
No 123
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=91.38 E-value=0.28 Score=57.94 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHHhccCCCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHH
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~ 729 (1101)
++..+.... ...|+|+|||-|.+|..++.. ++.+|+++|.++.-++-|+
T Consensus 220 lL~~lp~~~-~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~ 269 (378)
T PRK15001 220 FMQHLPENL-EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR 269 (378)
T ss_pred HHHhCCccc-CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 444454332 248999999999999999976 4789999999986555543
No 124
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=91.34 E-value=0.3 Score=58.59 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=34.2
Q ss_pred CCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 688 CDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 688 ~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
.+...|+|+|||.|+++..||.. ..+|+|||.++..++.|+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~ 331 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQ 331 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHH
Confidence 34468999999999999999954 569999999988776664
No 125
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=91.27 E-value=0.34 Score=57.17 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=33.8
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|-+|..|| ..+.+|+|||.++..++.|+
T Consensus 234 ~~~vLDL~cG~G~~~l~la-~~~~~v~~vE~~~~av~~a~ 272 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCA-GPDTQLTGIEIESEAIACAQ 272 (374)
T ss_pred CCEEEEccCCccHHHHHHh-hcCCeEEEEECCHHHHHHHH
Confidence 3589999999999999999 45789999999998776665
No 126
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=91.08 E-value=0.39 Score=51.34 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=33.5
Q ss_pred CCCeEEEEcCccchHhHHHHhcCC--CeEEEEeCCccccchHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHG--KKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~--~~V~~IE~~~~~~~gA~ 729 (1101)
....|+|+|||.|+++..++..++ .+++++|.++..+..+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 356899999999999999997765 59999999977654443
No 127
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.04 E-value=0.34 Score=59.43 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=35.4
Q ss_pred CeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHHH
Q psy9966 691 SHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~r 731 (1101)
..|+|+|||.|.++..|+.. .+.+|+|+|.++..++.|++.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N 181 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSN 181 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHH
Confidence 57999999999999999876 578999999999877777643
No 128
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=90.97 E-value=0.54 Score=49.98 Aligned_cols=50 Identities=14% Similarity=0.371 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCcc
Q psy9966 671 SYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQV 723 (1101)
Q Consensus 671 ~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~ 723 (1101)
++||..+ .++.|. .....+++|||||.|-++-.+|.. ++.+|++||.++.
T Consensus 19 K~EIRal--~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~ 69 (187)
T COG2242 19 KEEIRAL--TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEE 69 (187)
T ss_pred HHHHHHH--HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHH
Confidence 4688743 344444 334569999999999999999954 6899999999875
No 129
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=90.96 E-value=0.37 Score=50.91 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=32.5
Q ss_pred HHHhccCCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCcc
Q psy9966 682 AAVTNSCDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQV 723 (1101)
Q Consensus 682 ~~l~~~~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~ 723 (1101)
..+..-.....|+|+|||.|.++..++..+ ..+|+|+|.++.
T Consensus 25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred HHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 333333345689999999999999998765 458999999975
No 130
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=90.75 E-value=0.39 Score=54.80 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=39.5
Q ss_pred HHHHHHHH-HHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCC-eEEEEeCCccccchHH
Q psy9966 671 SYEVQVMS-QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGK-KTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 671 ~hEV~~~s-~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~-~V~~IE~~~~~~~gA~ 729 (1101)
.||-.+|. +++..+... ...|+|+|||.|=||-+-+. .|. +|+|+|.++.-+..|+
T Consensus 144 ~H~TT~lcl~~l~~~~~~--g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~ 201 (295)
T PF06325_consen 144 HHPTTRLCLELLEKYVKP--GKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAAR 201 (295)
T ss_dssp HCHHHHHHHHHHHHHSST--TSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccC--CCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHH
Confidence 57777654 344444332 35999999999999887774 454 8999999998665554
No 131
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=90.54 E-value=0.43 Score=54.47 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=36.0
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA 728 (1101)
..+.+.....+..+|+|+|||.|.++..++..+ +++|+++|. +.-++.|
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a 188 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLV 188 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHH
Confidence 344444444556799999999999999999774 799999997 3334333
No 132
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=90.50 E-value=0.4 Score=57.50 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=40.5
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~r 731 (1101)
.++..+........|+|+|||-|.++..++... +.+|+|+|.++..++.|+++
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n 287 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVREN 287 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 345545544455689999999999999999765 37999999999877666543
No 133
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=90.41 E-value=0.4 Score=56.64 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHHHh
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
.+++.+.... ...+||+|||.|.....+|.. ++..|+|||.+...+..|.++.
T Consensus 113 ~~~~~~~~~~-~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka 166 (390)
T PRK14121 113 NFLDFISKNQ-EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQI 166 (390)
T ss_pred HHHHHhcCCC-CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH
Confidence 4555554333 347999999999999999977 4789999999988776665443
No 134
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=90.32 E-value=0.41 Score=54.30 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=32.7
Q ss_pred eEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHH
Q psy9966 692 HIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~ 729 (1101)
+|+|+|+|.|-++-+||... ...|+|+|.|+.-+.-|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~ 151 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR 151 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH
Confidence 79999999999999999874 579999999987665554
No 135
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=90.15 E-value=0.34 Score=52.96 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=33.0
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
..+|++-|||+||=...||. .|.+|+|||.++.-++.|.+
T Consensus 38 ~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~~Ai~~~~~ 77 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSPTAIEQAFE 77 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHH-TTEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEeCCCChHHHHHHHH-CCCeEEEEecCHHHHHHHHH
Confidence 45899999999999999994 69999999999876666543
No 136
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=89.97 E-value=0.32 Score=48.56 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=31.0
Q ss_pred EEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHH
Q psy9966 693 IIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 693 vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~ 729 (1101)
++|+|||.|+.+..++... +.+|+++|.++.+...++
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 7999999999999998653 458999999998775554
No 137
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=89.73 E-value=0.53 Score=54.49 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=40.2
Q ss_pred HHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 677 MSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 677 ~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
++..+..++.......|+|.|||.|.+...++. .+.+|+|+|.++..+.+|+.
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~ 222 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARI 222 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHH
Confidence 344444455444456899999999999888764 68999999999988877753
No 138
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=89.73 E-value=0.35 Score=54.89 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=36.5
Q ss_pred HHHHHhccCCCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchH
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA 728 (1101)
++..+....+. .|+|+|||=|+||-.||..+ ..+|+.+|.|..-++.|
T Consensus 150 Ll~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 150 LLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESA 198 (300)
T ss_pred HHHhCCccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHH
Confidence 34445444333 89999999999999999875 78999999996544443
No 139
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=89.71 E-value=0.52 Score=55.21 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=32.5
Q ss_pred eEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 692 HIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
.|+|+|||.|.+|-.||... .+|+|||.++..++.|+
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQ 236 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHH
Confidence 69999999999999999665 49999999998876665
No 140
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=89.71 E-value=0.56 Score=50.30 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHH-HHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHhhh
Q psy9966 671 SYEVQVMSQVVA-AVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRSKK 734 (1101)
Q Consensus 671 ~hEV~~~s~~v~-~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~~k 734 (1101)
++|-++...++. .+... ....++|+|||-|.|+..||-. .-+++++|.++.-++.|++|-+.
T Consensus 25 ~YE~~K~~~~l~aaLp~~-ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 25 WYERRKYRATLLAALPRR-RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG 87 (201)
T ss_dssp HHHHHHHHHHHHHHHTTS-SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCcc-ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC
Confidence 788877766665 56543 2458999999999999999954 56999999998877777666543
No 141
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=89.17 E-value=0.51 Score=53.80 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=33.7
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
+...|+|+|||.|=||-+.+..--.+|+|+|.++.-+..|++
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH
Confidence 356899999999999998884333469999999987766653
No 142
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=89.12 E-value=0.7 Score=52.66 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=52.2
Q ss_pred hHHHHHHHhhhccCcccc-chh-hccCCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEE
Q psy9966 641 VDELFSKLQARKCGLVVE-SAK-VSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSL 718 (1101)
Q Consensus 641 ~~~l~~~l~~~~~~~~~~-~~~-~~~~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~I 718 (1101)
+++++..|.++.++.-.. ..+ =+|=-+.-|+.-+. .++..-. .+.|+|||||-||-+-.++-.-...|+||
T Consensus 72 l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~------p~l~~L~-gk~VLDIGC~nGY~~frM~~~GA~~ViGi 144 (315)
T PF08003_consen 72 LEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLL------PHLPDLK-GKRVLDIGCNNGYYSFRMLGRGAKSVIGI 144 (315)
T ss_pred HHHHHHhhCCcccCCcccCCEeecccccccchHHHHH------hhhCCcC-CCEEEEecCCCcHHHHHHhhcCCCEEEEE
Confidence 566778888877653211 111 23455666776554 3333333 46899999999999977774545579999
Q ss_pred eCCccccch
Q psy9966 719 DYNQVNTHG 727 (1101)
Q Consensus 719 E~~~~~~~g 727 (1101)
|.+.....+
T Consensus 145 DP~~lf~~Q 153 (315)
T PF08003_consen 145 DPSPLFYLQ 153 (315)
T ss_pred CCChHHHHH
Confidence 999876544
No 143
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=89.06 E-value=0.57 Score=51.49 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=33.7
Q ss_pred CeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 691 SHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
..|++.|||+|+=...|| ..|.+|+|||.++.-++.|.+
T Consensus 45 ~rvLvPgCGkg~D~~~LA-~~G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFL-SKGVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CeEEEeCCCChHHHHHHH-hCCCcEEEEecCHHHHHHHHH
Confidence 589999999999999999 569999999999886655543
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=89.04 E-value=0.58 Score=56.46 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=40.6
Q ss_pred HHHHHHHhccCCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHH
Q psy9966 678 SQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 678 s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~ 730 (1101)
+.+++..........|+|+|||-|..+..+|... +-+|+|+|.++..++.|++
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~ 293 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE 293 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 3455555554455689999999999999999654 5799999999887766653
No 145
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=88.98 E-value=0.6 Score=56.34 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHhccCCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHHHh
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
++..+........|+|+|||-|+.+..++... +-+|+|+|.++..++.|+++.
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~ 295 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHA 295 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH
Confidence 44444444445689999999999998888543 469999999998776665444
No 146
>KOG1541|consensus
Probab=88.97 E-value=0.42 Score=51.81 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=36.2
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
...|+|||||.|--|..|. ..|+..+|+|.++...+.|.+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHH
Confidence 5689999999999999998 578999999999999888876
No 147
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=88.72 E-value=0.45 Score=51.08 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=32.4
Q ss_pred eEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHHHh
Q psy9966 692 HIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
.+||+|||+|.....+|.. ++..++|||.....+..|..+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~ 61 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKA 61 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHH
Confidence 6799999999999999977 6999999999987665554433
No 148
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=88.68 E-value=0.59 Score=54.02 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=34.4
Q ss_pred CCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~ 729 (1101)
...++|+|+|-|-+.-.|+.. ++.+|+|+|.++..++.|+
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~ 155 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQ 155 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Confidence 357999999999999999865 7899999999988776665
No 149
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=88.57 E-value=0.65 Score=50.32 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=42.1
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhc--CCCeEEEEeCCccccchHHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ--HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~--~~~~V~~IE~~~~~~~gA~~ 730 (1101)
+++..++...+++.|++||+|-||=+-.+|.. .+-+|++||.++.+.+-|++
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~ 88 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARE 88 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHH
Confidence 46666666677889999999999999999965 36899999999987766654
No 150
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=88.50 E-value=0.49 Score=52.91 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=33.6
Q ss_pred CCCeEEEEcCccchHhHHHHhcCC--CeEEEEeCCccccchHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHG--KKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~--~~V~~IE~~~~~~~gA~~ 730 (1101)
....|+|+|||-|+++..++...+ .+|+|||.++..++.|++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~ 120 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence 356999999999999988876554 479999999887666654
No 151
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=88.26 E-value=0.76 Score=55.14 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHHHhccCCCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHH
Q psy9966 678 SQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 678 s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~ 730 (1101)
|.++...........|+|+|||-|+.+..+|... +-+|+|+|.++...+.+++
T Consensus 227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~ 280 (426)
T TIGR00563 227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE 280 (426)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3455555554445789999999999999999654 4799999999887655543
No 152
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=88.26 E-value=0.78 Score=51.47 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=37.6
Q ss_pred HHHHHhccCCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHH
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~ 730 (1101)
++..+........|+|+|||-|+.+..||... +-.|+|+|.++.....+++
T Consensus 62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~ 114 (264)
T TIGR00446 62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIA 114 (264)
T ss_pred HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH
Confidence 33334444445689999999999999998654 3489999999887655543
No 153
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=88.11 E-value=0.78 Score=55.20 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHH
Q psy9966 678 SQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 678 s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~ 730 (1101)
|.++..+........|+|+|||-|..+..+|... +-+|+|+|.++...+.+++
T Consensus 226 s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~ 280 (431)
T PRK14903 226 SQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEK 280 (431)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 3455555555556789999999999999998654 5799999999876655543
No 154
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=87.65 E-value=1.1 Score=47.83 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=32.4
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA 728 (1101)
...|+|++||.|.+|-.++.....+|++||.++..++.+
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~ 88 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTL 88 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence 458999999999999999876445999999998766544
No 155
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=87.56 E-value=0.85 Score=53.16 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=32.9
Q ss_pred CCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~ 729 (1101)
...|+|+|||.|.++..++... +.+|+++|.++...+.|+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~ 154 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 4589999999999999998664 579999999987655554
No 156
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=87.54 E-value=0.98 Score=49.58 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=33.6
Q ss_pred hccCCCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHH
Q psy9966 685 TNSCDSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 685 ~~~~~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~ 730 (1101)
..-.+..+|||+|+|.|+++..++.. ++++++..|. +..++.|..
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~ 141 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE 141 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc
Confidence 34446779999999999999999977 5999999998 444555543
No 157
>KOG1271|consensus
Probab=87.48 E-value=0.65 Score=49.08 Aligned_cols=40 Identities=30% Similarity=0.425 Sum_probs=32.5
Q ss_pred CCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~ 729 (1101)
+..|+|+|+|-|||=+.|+.. +.-+.+|||+++.-++-|+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~ 108 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ 108 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH
Confidence 448999999999999999965 5667999999976655443
No 158
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=87.46 E-value=0.86 Score=50.48 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=41.8
Q ss_pred HHHHHhccCCCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHHHhhh
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAVRSKK 734 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~r~~k 734 (1101)
+++.+-.. ....|+|+|||.|-++..++-.. ..+|+|+|.|+....-|+++..+
T Consensus 43 ~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 43 LISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred HHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc
Confidence 44444333 34689999999999999999765 57999999999988777766543
No 159
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=86.49 E-value=1.1 Score=52.54 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=32.4
Q ss_pred CeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 691 SHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
..++|++||.|-+|-.||.. ..+|+|||.++..++-|+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~ 245 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQ 245 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHH
Confidence 36999999999999999955 459999999998876665
No 160
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=86.47 E-value=1.2 Score=48.32 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQ 722 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~ 722 (1101)
...|+|+|||-|..++.|+... +.+|+|||.++
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 3489999999999999998764 36999999987
No 161
>KOG3420|consensus
Probab=86.33 E-value=1.8 Score=44.28 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=54.1
Q ss_pred cchHHHHHHHhhhccCccccchhhccCCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEE
Q psy9966 639 ITVDELFSKLQARKCGLVVESAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSL 718 (1101)
Q Consensus 639 ~~~~~l~~~l~~~~~~~~~~~~~~~~~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~I 718 (1101)
+++.+|.+.|+.-. +.......+-+.|++- |=--.|-..|..--..-..+.+.|+|||-|-|+.+-|.--+-.|+|+
T Consensus 1 m~~Kel~~~L~~v~-gFeKpk~~LEQY~T~p--~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGf 77 (185)
T KOG3420|consen 1 MRLKELESRLQQVD-GFEKPKLLLEQYPTRP--HIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGF 77 (185)
T ss_pred CchHHHHHHHHHhc-cccccchhhhhCCCcH--HHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEee
Confidence 35667777776422 1222334556666653 22223344444433333467899999999999977776567899999
Q ss_pred eCCccccchH
Q psy9966 719 DYNQVNTHGA 728 (1101)
Q Consensus 719 E~~~~~~~gA 728 (1101)
|.++...+-+
T Consensus 78 DIdpeALEIf 87 (185)
T KOG3420|consen 78 DIDPEALEIF 87 (185)
T ss_pred ecCHHHHHHH
Confidence 9998755443
No 162
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=86.06 E-value=1.1 Score=54.05 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHH
Q psy9966 677 MSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 677 ~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~ 730 (1101)
-|.++..+........|+|+|||-|..+..||... +-+|+|+|.++..+..+++
T Consensus 240 ~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~ 295 (434)
T PRK14901 240 SAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQE 295 (434)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHH
Confidence 34555555555455789999999999999999754 3589999999876655543
No 163
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=86.04 E-value=1 Score=49.36 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=31.2
Q ss_pred CEEEEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCC
Q psy9966 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATT 47 (1101)
Q Consensus 1 Mf~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~ 47 (1101)
.|.|+.++++++|+||....++.... .+...++|+||+|+||...
T Consensus 137 g~~i~~~~~~i~y~gDt~~~~~~~~~--~~~~~~~D~li~e~~~~~~ 181 (238)
T TIGR03307 137 GYLLETDGQRVAYLTDTAGLPPDTEA--FLKNHPLDVLILDCSHPPQ 181 (238)
T ss_pred EEEEecCCcEEEEEecCCCCCHHHHH--HHhcCCCCEEEEeCCcCcc
Confidence 37889999999999998643221111 1112379999999999754
No 164
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=85.92 E-value=0.45 Score=49.64 Aligned_cols=38 Identities=34% Similarity=0.540 Sum_probs=31.4
Q ss_pred EEEEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCC
Q psy9966 2 FQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATT 47 (1101)
Q Consensus 2 f~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~ 47 (1101)
|+|+.+|++|+|+||.+. + + ..+ .++|+||+|++|...
T Consensus 123 ~~i~~~~~~i~~~gD~~~--~--~--~~~--~~~D~li~~~~~~~~ 160 (194)
T PF12706_consen 123 FVIEPDGKKIFYSGDTNY--D--F--EEL--KNIDLLILECGYIDE 160 (194)
T ss_dssp EEEEETTEEEEEETSSSS--C--H--HHH--TTBSEEEEEBCBSSG
T ss_pred EEEecCCcceEEeeccch--h--h--hhh--ccCCEEEEeCCCcch
Confidence 889999999999999998 2 2 223 469999999999853
No 165
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=85.85 E-value=1.1 Score=51.23 Aligned_cols=53 Identities=19% Similarity=0.123 Sum_probs=40.2
Q ss_pred HHHHHHHhccCCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHHHH
Q psy9966 678 SQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 678 s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~~r 731 (1101)
.+++..+.... ...+||.++|.|+-+..++... +.+|+|+|.++.....|+++
T Consensus 9 ~Evl~~L~~~p-g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 9 DEVVDALAIKP-DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred HHHHHhhCCCC-CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 35566654222 2489999999999999999775 48999999999877666543
No 166
>PRK00811 spermidine synthase; Provisional
Probab=85.72 E-value=0.99 Score=51.22 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=35.6
Q ss_pred CCCCeEEEEcCccchHhHHHHhcCC-CeEEEEeCCccccchHHH
Q psy9966 688 CDSSHIIDLGGGQGYLSTILALQHG-KKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 688 ~~~~~vVD~GsGkGyLsr~La~~~~-~~V~~IE~~~~~~~gA~~ 730 (1101)
.+.+.|+|+|+|-|.+++.+...++ .+|++||.++..++-|++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~ 118 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRK 118 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHH
Confidence 3467999999999999999885544 589999999988876654
No 167
>PLN02476 O-methyltransferase
Probab=84.89 E-value=1.5 Score=49.73 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=40.3
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhc--CCCeEEEEeCCccccchHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ--HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~--~~~~V~~IE~~~~~~~gA~ 729 (1101)
+++..++...+.+.|+|+|+|-||-+-.+|.. .+-+|++||.++....-|+
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar 160 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK 160 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 45566666667889999999999999999864 3557999999998665554
No 168
>PLN02672 methionine S-methyltransferase
Probab=84.62 E-value=1.3 Score=58.59 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhccC-CCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHH
Q psy9966 672 YEVQVMSQVVAAVTNSC-DSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 672 hEV~~~s~~v~~l~~~~-~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~ 729 (1101)
.|.+.+.+-+....... +...|+|+|||.|.++..||..+ +.+|+|+|.++.-+.-|.
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 66666555533321110 13579999999999999999875 589999999998777664
No 169
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=84.44 E-value=1.5 Score=51.38 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 673 EVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 673 EV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
..+.|-+.+.......+. .|+|+-||-|-+|-.|| ....+|+|||.++..+..|+
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHH
Confidence 445555666665554443 79999999999999999 56779999999999887775
No 170
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=84.16 E-value=1.3 Score=46.91 Aligned_cols=51 Identities=20% Similarity=0.467 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcccc
Q psy9966 673 EVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725 (1101)
Q Consensus 673 EV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~ 725 (1101)
.+++++.+-+.++.... ..+-|+|+|.|-||-+-| ++.-+|++||.++...
T Consensus 17 D~eRlavF~~ai~~va~-d~~~DLGaGsGiLs~~Aa-~~A~rViAiE~dPk~a 67 (252)
T COG4076 17 DVERLAVFTSAIAEVAE-DTFADLGAGSGILSVVAA-HAAERVIAIEKDPKRA 67 (252)
T ss_pred hHHHHHHHHHHHHHHhh-hceeeccCCcchHHHHHH-hhhceEEEEecCcHHH
Confidence 46777777666665544 367899999999976666 6789999999998744
No 171
>PLN03075 nicotianamine synthase; Provisional
Probab=83.73 E-value=1.7 Score=49.74 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=34.5
Q ss_pred HHHHHhccCCCCeEEEEcCccchH-hHHHHh--cCCCeEEEEeCCccccchHHH
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYL-STILAL--QHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyL-sr~La~--~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
++..+... +.+.|+|+|||-|=| +-.++. .++-+|+|+|.++...+.|++
T Consensus 115 ~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~ 167 (296)
T PLN03075 115 LLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARR 167 (296)
T ss_pred HHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 33444333 678999999996544 444542 257789999999987776654
No 172
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=81.27 E-value=1.9 Score=47.77 Aligned_cols=45 Identities=18% Similarity=0.398 Sum_probs=31.1
Q ss_pred CEEEEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCC
Q psy9966 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATT 47 (1101)
Q Consensus 1 Mf~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~ 47 (1101)
.|+|+.++++|+||||-...++... ..+...++|+||.|+||...
T Consensus 147 g~~i~~~~~~i~ysgDt~~~~~~~~--~~~~~~~~Dlli~e~~~~~~ 191 (250)
T PRK11244 147 GYLLETAHSRVAYLTDTVGLPEDTL--KFLRNNQPDLLVLDCSHPPQ 191 (250)
T ss_pred EEEEecCCeEEEEEcCCCCCCHHHH--HHHhcCCCCEEEEeCcCCCC
Confidence 3789999999999999764322111 01112479999999999753
No 173
>KOG2899|consensus
Probab=81.04 E-value=1.4 Score=48.47 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=38.6
Q ss_pred CCeEEEEcCccchHhHHHHhcCC-CeEEEEeCCccccchHHHHhhh
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHG-KKTLSLDYNQVNTHGAAVRSKK 734 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~-~~V~~IE~~~~~~~gA~~r~~k 734 (1101)
...++||||--|-|+..+|-.+| ..|+|+|.++.+++.|.+-.+.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 45789999999999999998776 6899999999999888765543
No 174
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=80.95 E-value=2 Score=49.91 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=32.9
Q ss_pred CCCeEEEEcCccch-HhHHHHhcCCCeEEEEeCCccccchHHHHhhhh
Q psy9966 689 DSSHIIDLGGGQGY-LSTILALQHGKKTLSLDYNQVNTHGAAVRSKKL 735 (1101)
Q Consensus 689 ~~~~vVD~GsGkGy-Lsr~La~~~~~~V~~IE~~~~~~~gA~~r~~kl 735 (1101)
+...|+|+|||+|- |.-... ..-..++|+|.+...++.|+.|-+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~ 108 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQL 108 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 45699999999987 655544 33469999999999999998877544
No 175
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=80.84 E-value=2.8 Score=47.18 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=52.3
Q ss_pred cchHHHHHHHhhhc--cC----ccccchhhccCCCcchHHHHHHHHHHH-HHHhc---cCCCCeEEEEcCccch----Hh
Q psy9966 639 ITVDELFSKLQARK--CG----LVVESAKVSQLMSEKKSYEVQVMSQVV-AAVTN---SCDSSHIIDLGGGQGY----LS 704 (1101)
Q Consensus 639 ~~~~~l~~~l~~~~--~~----~~~~~~~~~~~mn~KK~hEV~~~s~~v-~~l~~---~~~~~~vVD~GsGkGy----Ls 704 (1101)
.++++.+..|..+. .. ......+.+.|.-.++ +.+.+...+ ..+.. ......|+|+|||.|. |+
T Consensus 41 ~~~~~y~~~l~~~~~~~e~~~l~~~lti~~T~FfR~~~--~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA 118 (264)
T smart00138 41 KDFSEYLELLTSHRGEEELAELLDLMTTNETRFFRESK--HFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLA 118 (264)
T ss_pred CCHHHHHHHHhcCCcHHHHHHHHHHhhcCCCcccCCcH--HHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHH
Confidence 46777777776543 10 0111334455554443 333343332 22222 1234589999999997 66
Q ss_pred HHHHhc------CCCeEEEEeCCccccchHHH
Q psy9966 705 TILALQ------HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 705 r~La~~------~~~~V~~IE~~~~~~~gA~~ 730 (1101)
..|+.. .+.+|+|+|.++..++.|++
T Consensus 119 ~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 119 MLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred HHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 666532 25799999999988877753
No 176
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=80.82 E-value=2.7 Score=46.06 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=42.1
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhc-C-CCeEEEEeCCccccchHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ-H-GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~-~-~~~V~~IE~~~~~~~gA~ 729 (1101)
.++..++...+.+.|+++|.+-||=+-.+|.. + +-++++||.|++...-|+
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~ 101 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIAR 101 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHH
Confidence 56666666678899999999999999999975 3 568999999998776664
No 177
>KOG1499|consensus
Probab=80.41 E-value=1.5 Score=50.66 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=29.7
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQV 723 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~ 723 (1101)
.+.|+|+|||.|=||.+-|..--.+|+|||++..
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i 94 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI 94 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHH
Confidence 6789999999999999988555679999999865
No 178
>PRK00685 metal-dependent hydrolase; Provisional
Probab=80.20 E-value=3.6 Score=44.47 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=45.7
Q ss_pred ccCCCHHHHHHHHHHhCCCEEEEecCCh-----hHHHHHHHHHHHHcCCceeecCCCCEEEE
Q psy9966 228 SAHADAKGIMQLIQYCEPKNVLLVHGEA-----SKMVFLKEKIKQEFNLDCFMPANGESCFV 284 (1101)
Q Consensus 228 SaHAD~~~l~~~I~~l~Pk~VILVHGe~-----~~m~~Lk~~L~~e~gi~v~~P~nGe~v~l 284 (1101)
..|.+.++..++++.++|+.+|++|-.. ...+.+++.+++ ++.++..|+.|+.+++
T Consensus 168 ~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEG-LGTKVVILKPGESIEL 228 (228)
T ss_pred ccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHh-cCCcEEECCCCCEeeC
Confidence 4589999999999999999999999641 234667766665 7788999999999864
No 179
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=80.05 E-value=2.4 Score=47.75 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=34.9
Q ss_pred CCCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHH
Q psy9966 688 CDSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 688 ~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~ 730 (1101)
.+...|+++|+|.|.+++.++... ..+|+++|.++..++.|++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~ 114 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKK 114 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHH
Confidence 345699999999999999887554 4689999999887766654
No 180
>KOG0820|consensus
Probab=79.04 E-value=3.9 Score=45.97 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=50.1
Q ss_pred hhccCCCcchHHHHHHHHHHHHHHhccC---CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcccc
Q psy9966 661 KVSQLMSEKKSYEVQVMSQVVAAVTNSC---DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725 (1101)
Q Consensus 661 ~~~~~mn~KK~hEV~~~s~~v~~l~~~~---~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~ 725 (1101)
....+=+.+++|=..+ +.+++.|.... ....|+++|-|.|.|+..|- +-|.+|+|+|.++..+
T Consensus 28 ~~~kfnkd~GQHilkN-p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmv 93 (315)
T KOG0820|consen 28 GGSKFNKDFGQHILKN-PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMV 93 (315)
T ss_pred cCcccccccchhhhcC-HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHH
Confidence 3445556778888877 77778777543 35578999999999999987 7899999999998765
No 181
>KOG1661|consensus
Probab=78.82 E-value=0.99 Score=48.75 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=31.2
Q ss_pred eEEEEcCccchHhHHHHh---cCCCeEEEEeCCccccchHH
Q psy9966 692 HIIDLGGGQGYLSTILAL---QHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~---~~~~~V~~IE~~~~~~~gA~ 729 (1101)
..+|+|||.|||+-..|. ..|..++|||.-+++++-++
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk 125 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSK 125 (237)
T ss_pred ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHH
Confidence 579999999999998883 35777799999988875554
No 182
>KOG2904|consensus
Probab=78.36 E-value=5.5 Score=44.86 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=31.9
Q ss_pred CCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA 728 (1101)
..+|+|+|||.|-.|-.|+.. .+..|+|||.+..-+.-|
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La 188 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLA 188 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHH
Confidence 458999999999999999977 578999999986544333
No 183
>PLN02366 spermidine synthase
Probab=77.89 E-value=2.9 Score=48.13 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=36.8
Q ss_pred cCCCCeEEEEcCccchHhHHHHhcCC-CeEEEEeCCccccchHHHH
Q psy9966 687 SCDSSHIIDLGGGQGYLSTILALQHG-KKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 687 ~~~~~~vVD~GsGkGyLsr~La~~~~-~~V~~IE~~~~~~~gA~~r 731 (1101)
..+.+.|+++|+|-|.+.|.++..++ .+|+.||.++..++-|++.
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~ 134 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKF 134 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHh
Confidence 34577999999999999999986554 5899999999877666543
No 184
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=77.76 E-value=2.9 Score=49.85 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=32.0
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
.+.|+|+|||.|++|-..+.....+|++||.++..++-|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~ 260 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR 260 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 4589999999999987766544459999999988776554
No 185
>KOG1500|consensus
Probab=76.82 E-value=2.3 Score=48.63 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=28.9
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQV 723 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~ 723 (1101)
.+-|||+|||.|-||-+-|..-..+|++||.++-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~M 211 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEM 211 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhHH
Confidence 5678999999999998888656679999999853
No 186
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=76.82 E-value=3.8 Score=48.62 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=44.6
Q ss_pred hccCCCcchHHHHHHHHHHHHHHhccC-CCCeEEEEcCccchHhHHHHhcCC-CeEEEEeCCccccchHH
Q psy9966 662 VSQLMSEKKSYEVQVMSQVVAAVTNSC-DSSHIIDLGGGQGYLSTILALQHG-KKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 662 ~~~~mn~KK~hEV~~~s~~v~~l~~~~-~~~~vVD~GsGkGyLsr~La~~~~-~~V~~IE~~~~~~~gA~ 729 (1101)
-..|-||+ ..--+.|+.++....... +...|+|.+||.|.+|-.+|...+ .+|+++|.|+..++-|+
T Consensus 30 ~~vFyqp~-~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~ 98 (382)
T PRK04338 30 APVFYNPR-MELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK 98 (382)
T ss_pred CCeeeCcc-ccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 34555655 222223444444443322 234799999999999999997766 59999999988775554
No 187
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=75.99 E-value=4.2 Score=45.41 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=40.9
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhc--CCCeEEEEeCCccccchHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ--HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~--~~~~V~~IE~~~~~~~gA~ 729 (1101)
+++..++...+++.|+++|.+-||=+-.+|.. .+-+|++||.++....-|+
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar 121 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL 121 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH
Confidence 56666667777889999999999998888864 4679999999987665543
No 188
>KOG2187|consensus
Probab=75.75 E-value=3.7 Score=49.70 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 673 EVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 673 EV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
--+.+-.+|...+....-+.++|++||.|-.|-+|| +.-.+|+|||.+++-+.-|+
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAE 422 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhh
Confidence 345555677777766666899999999999999999 55679999999998876664
No 189
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=75.21 E-value=6.2 Score=41.45 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=33.3
Q ss_pred HHHHHHHHH------hccCCCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCc
Q psy9966 676 VMSQVVAAV------TNSCDSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQ 722 (1101)
Q Consensus 676 ~~s~~v~~l------~~~~~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~ 722 (1101)
.|+.++... ........|+++|||-|-.|-++|.. ...+|+.=|.++
T Consensus 26 ~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~ 79 (173)
T PF10294_consen 26 VLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE 79 (173)
T ss_dssp HHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-
T ss_pred HHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch
Confidence 455666653 33445679999999999999999976 578999999987
No 190
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=75.14 E-value=3.3 Score=53.00 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
+++.++. .+.|+|+|||.|.+|-.+|.....+|++||.++..++-|+
T Consensus 532 ~~~~~~~---g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~ 578 (702)
T PRK11783 532 MIGQMAK---GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAE 578 (702)
T ss_pred HHHHhcC---CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 4555543 3589999999999999999653357999999988776554
No 191
>PRK03612 spermidine synthase; Provisional
Probab=74.84 E-value=4.8 Score=49.74 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=36.9
Q ss_pred ccCCCCeEEEEcCccchHhHHHHhcCC-CeEEEEeCCccccchHHH
Q psy9966 686 NSCDSSHIIDLGGGQGYLSTILALQHG-KKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 686 ~~~~~~~vVD~GsGkGyLsr~La~~~~-~~V~~IE~~~~~~~gA~~ 730 (1101)
...+.+.|+|+|+|-|.+++.++...+ -+|++||.|+..++-|++
T Consensus 294 ~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 294 ASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELART 339 (521)
T ss_pred hCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHh
Confidence 334567999999999999999885444 699999999998877754
No 192
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=74.77 E-value=4.8 Score=44.88 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=40.5
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhc--CCCeEEEEeCCccccchHH
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ--HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~--~~~~V~~IE~~~~~~~gA~ 729 (1101)
.+|...+.-.....|+|.|.|.|-|+-+||.. ..=+|++.|..+.+.+.|.
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~ 136 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTAR 136 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHH
Confidence 45555555555779999999999999999953 4569999999988776664
No 193
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=73.73 E-value=3.4 Score=44.67 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=40.7
Q ss_pred CCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHh-cCCCeEEEEeCCccccchH
Q psy9966 665 LMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILAL-QHGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 665 ~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~-~~~~~V~~IE~~~~~~~gA 728 (1101)
.-|++-.+|=.+++..+. ....|+|..||-||.+-.+|. ..+..|+|+|.|+..++..
T Consensus 83 yfs~rl~~Er~Ri~~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L 141 (200)
T PF02475_consen 83 YFSPRLSTERRRIANLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL 141 (200)
T ss_dssp ---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH
T ss_pred EEccccHHHHHHHHhcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH
Confidence 338888899888776533 245899999999999999985 3577899999999866544
No 194
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=72.44 E-value=6.9 Score=47.44 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=26.2
Q ss_pred CCeEEEEcCccchHhHHHHhc-----CCCeEEEEeCCcccc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ-----HGKKTLSLDYNQVNT 725 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~-----~~~~V~~IE~~~~~~ 725 (1101)
...|+|+|||.|=|+.+.+.. ...+|+|||.|+.-+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~ 227 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV 227 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH
Confidence 457999999999998765422 248999999997533
No 195
>PTZ00146 fibrillarin; Provisional
Probab=72.07 E-value=5 Score=45.87 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=28.5
Q ss_pred CCeEEEEcCccchHhHHHHhcCC--CeEEEEeCCcc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHG--KKTLSLDYNQV 723 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~--~~V~~IE~~~~ 723 (1101)
...|+|+|||.|+.+..||-.-+ =.|+|+|.++.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r 168 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHR 168 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHH
Confidence 45899999999999999997653 47999998753
No 196
>PRK01581 speE spermidine synthase; Validated
Probab=72.07 E-value=4.6 Score=47.51 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=36.4
Q ss_pred ccCCCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHH
Q psy9966 686 NSCDSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 686 ~~~~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~ 730 (1101)
...+...|+++|+|-|+..|.+.... ..+|++||.++..++-|++
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 34557799999999999998887543 3699999999988877753
No 197
>PRK00055 ribonuclease Z; Reviewed
Probab=71.23 E-value=1.9 Score=47.64 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=29.3
Q ss_pred EEEEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCC
Q psy9966 2 FQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATT 47 (1101)
Q Consensus 2 f~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~ 47 (1101)
+.++.+|++|+|+||-+..+. .. ++ ..++|+||+|+||...
T Consensus 160 ~~~~~~g~~~~y~~Dt~~~~~-~~---~~-~~~~d~li~E~~~~~~ 200 (270)
T PRK00055 160 LGPPRKGRKVAYCGDTRPCEA-LV---EL-AKGADLLVHEATFGDE 200 (270)
T ss_pred eccCCCCcEEEEeCCCCCcHH-HH---HH-hCCCCEEEEeccCCcc
Confidence 456778899999999876421 11 11 2479999999999764
No 198
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=69.82 E-value=4.1 Score=42.68 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.7
Q ss_pred CeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 691 SHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
+.|+|.+||-|--+-.+|. ..-+|+|||.|+..+.-|+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~-~~~~Viaidid~~~~~~a~ 38 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFAR-TFDRVIAIDIDPERLECAK 38 (163)
T ss_dssp SEEEETT-TTSHHHHHHHH-TT-EEEEEES-HHHHHHHH
T ss_pred CEEEEeccCcCHHHHHHHH-hCCeEEEEECCHHHHHHHH
Confidence 3689999999999999994 4778999999998876664
No 199
>KOG3191|consensus
Probab=68.68 E-value=6 Score=42.08 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=30.4
Q ss_pred CCeEEEEcCccchHhHHHHhc--CCCeEEEEeCCcccc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ--HGKKTLSLDYNQVNT 725 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~--~~~~V~~IE~~~~~~ 725 (1101)
..-++|+|||.|+.+.+|+.. .+...++.|.|+.-+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~ 81 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL 81 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH
Confidence 457899999999999999976 467788999998744
No 200
>KOG3010|consensus
Probab=68.41 E-value=4.2 Score=44.98 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=34.4
Q ss_pred HHHHHHhccCCCC-eEEEEcCccchHhHHHHhcCCCeEEEEeCCcccc
Q psy9966 679 QVVAAVTNSCDSS-HIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725 (1101)
Q Consensus 679 ~~v~~l~~~~~~~-~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~ 725 (1101)
..+..++..+++. .++|+|||-|--+|.+| .|=-+|+|+|.+++..
T Consensus 22 dw~~~ia~~~~~h~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL 68 (261)
T KOG3010|consen 22 DWFKKIASRTEGHRLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAML 68 (261)
T ss_pred HHHHHHHhhCCCcceEEEeccCCCcchHHHH-HhhhhheeecCCHHHH
Confidence 4555565554443 78999999997777787 5567999999997754
No 201
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=67.50 E-value=2.6 Score=46.23 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=32.8
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~ 730 (1101)
-++++|+|||.|-.|-.|- ..--+.+|+|.++..++.|.+
T Consensus 126 F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHE 165 (287)
T ss_pred cceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHh
Confidence 6799999999999998887 345678999999877766644
No 202
>PRK00055 ribonuclease Z; Reviewed
Probab=66.85 E-value=14 Score=40.87 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=47.0
Q ss_pred cccCCCHHHHHHHHHHhCCCEEEEecCChhH---HHHHHHHHHHHcCCceeecCCCCEEEEecC
Q psy9966 227 FSAHADAKGIMQLIQYCEPKNVLLVHGEASK---MVFLKEKIKQEFNLDCFMPANGESCFVQTD 287 (1101)
Q Consensus 227 fSaHAD~~~l~~~I~~l~Pk~VILVHGe~~~---m~~Lk~~L~~e~gi~v~~P~nGe~v~l~~~ 287 (1101)
..+|.+.++..++.+.++|+++++.|=.+.. ...+.+.+++.+ .++.++..|.+++|+.+
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~~~~~~~~~~~~~~-~~v~~a~Dg~~i~l~~~ 269 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHFSPRYTGDPEELLKEAREIF-PNTELAEDLMRVEVPFR 269 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeeccccCCCHHHHHHHHHHHc-CCcEEccCCcEEEecCC
Confidence 4789999999999999999999999975432 234444555555 38899999999998653
No 203
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=65.55 E-value=11 Score=42.26 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=34.2
Q ss_pred HHHHHhccCCCCeEEEEcCccchHhHHHHhc--CCCeEEEEeCCccccchHH
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQ--HGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~--~~~~V~~IE~~~~~~~gA~ 729 (1101)
+|-...+-.....||+.|.|.|.|+-+||.. +.=+|++.|.++...+.|+
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~ 82 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKAR 82 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHH
Confidence 3444444445679999999999999999954 4459999999987665554
No 204
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=64.25 E-value=6.9 Score=43.18 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=34.2
Q ss_pred CeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchHHHHh
Q psy9966 691 SHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
.-+||||||.|-.-..+|.+ +...++|||....-+..|.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~ 92 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKI 92 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHH
Confidence 36899999999999999976 7899999999877665555433
No 205
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=63.36 E-value=10 Score=43.42 Aligned_cols=94 Identities=23% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCCCCCChhHH-HHHHHHHHHHHHhCCCeEEEeecchhHHH-
Q psy9966 7 GNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCR-ERDFLKKVHECVDRGGKVLIPVFALGRAQ- 84 (1101)
Q Consensus 7 ~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~~~~~r~~r-E~~f~~~I~etl~~GG~VLIPvFAlGRaQ- 84 (1101)
.|++|+||||-+.. +..+.-+. ++|+||.|+||.....+..... -....+...-.-+.|=+-||.+--.-|..
T Consensus 189 ~G~~v~ysGDT~p~-~~~~~~a~----~aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~~ 263 (292)
T COG1234 189 KGKSVVYSGDTRPC-DELIDLAK----GADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRYPK 263 (292)
T ss_pred CCcEEEEECCCCCC-HHHHHHhc----CCCEEEEeccCCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeecccccc
Q ss_pred HHHHHHHHHHHhcCCCccEEEeC
Q psy9966 85 ELCILLETYWERMNLQAPIYFAV 107 (1101)
Q Consensus 85 ELl~iL~~~w~~~~~~vPIy~~s 107 (1101)
+.-.++.+.++..+- +++++.
T Consensus 264 ~~~~~~~ea~~~f~~--~~~~a~ 284 (292)
T COG1234 264 DDEELLKEARAIFPG--ETIVAR 284 (292)
T ss_pred hHHHHHHHHHHhCCC--ceEEec
No 206
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=61.43 E-value=10 Score=43.55 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=28.1
Q ss_pred EEEEEC--CEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCC
Q psy9966 2 FQVKVG--NQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTY 44 (1101)
Q Consensus 2 f~Ie~~--g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTY 44 (1101)
|+|+.+ |++++|++|.+.-++.... . ..++|+||+|++|
T Consensus 182 y~i~~~~~g~~~~y~tD~g~~~~~~~~--~--l~~~d~liida~~ 222 (302)
T TIGR02108 182 LKIEDGTTGKRLFYIPGCAEITDDLKA--R--MAGADLVFFDGTL 222 (302)
T ss_pred EEEEeCCCCcEEEEECCCCCCCHHHHH--H--HhCCCEEEEeCCC
Confidence 788888 8999999998743222111 1 2468999999994
No 207
>KOG2862|consensus
Probab=60.15 E-value=39 Score=38.94 Aligned_cols=81 Identities=20% Similarity=0.419 Sum_probs=51.6
Q ss_pred EEEEcCCCCCCchHHHHHHHhCCCCCCeEEEecccCCCcchhhhhcCcceEEecCCeeEEEeeEEEEE--ecccCCCHHH
Q psy9966 158 VVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYM--SFSAHADAKG 235 (1101)
Q Consensus 158 VViaspGmL~~G~s~~~~~~w~~d~~N~VI~tGy~~~GT~g~~Ll~g~k~i~l~~g~~i~v~~~V~~i--~fSaHAD~~~ 235 (1101)
.+|+++| ++|.-..+-+-+-++.+-.+..|| +.|.+-.+-.++ ..++|+.+ ++-.|+..++
T Consensus 71 f~isgsG--h~g~E~al~N~lePgd~vLv~~~G-----~wg~ra~D~~~r----------~ga~V~~v~~~~G~~~~le~ 133 (385)
T KOG2862|consen 71 FVISGSG--HSGWEAALVNLLEPGDNVLVVSTG-----TWGQRAADCARR----------YGAEVDVVEADIGQAVPLEE 133 (385)
T ss_pred EEEecCC--cchHHHHHHhhcCCCCeEEEEEec-----hHHHHHHHHHHh----------hCceeeEEecCcccCccHHH
Confidence 4566666 456433333333333333444454 455444442222 23456655 7899999999
Q ss_pred HHHHHHHhCCCEEEEecCCh
Q psy9966 236 IMQLIQYCEPKNVLLVHGEA 255 (1101)
Q Consensus 236 l~~~I~~l~Pk~VILVHGe~ 255 (1101)
|.+=+.+-+|+-|+++|||.
T Consensus 134 i~~~lsqh~p~~vfv~hgds 153 (385)
T KOG2862|consen 134 ITEKLSQHKPKAVFVTHGDS 153 (385)
T ss_pred HHHHHHhcCCceEEEEecCc
Confidence 99999999999999999995
No 208
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=58.17 E-value=17 Score=38.83 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=28.8
Q ss_pred eEEEEcCccchHhHHHHhc-CCCeEEEEeCCcc
Q psy9966 692 HIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQV 723 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~ 723 (1101)
.++|+|||-|.=|-.||.- +..+|+.||++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~K 83 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGK 83 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCch
Confidence 6999999999999999976 6899999999853
No 209
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=57.05 E-value=11 Score=39.54 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCcc
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQV 723 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~ 723 (1101)
+...+||+||+-|.-++++.... ..+|+|||..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45689999999999999999665 589999999876
No 210
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=56.61 E-value=18 Score=41.27 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=58.2
Q ss_pred hhccCCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccc-hHhHHHHhcCC--CeEEEEeCCccccchHHHHh
Q psy9966 661 KVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQG-YLSTILALQHG--KKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 661 ~~~~~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkG-yLsr~La~~~~--~~V~~IE~~~~~~~gA~~r~ 732 (1101)
--..|+-.+|.|=-+.+...+..+.......+|||+.||.| |+=-+|.-... ..|+-.|.++.|++.++..-
T Consensus 107 iGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li 181 (311)
T PF12147_consen 107 IGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALI 181 (311)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHH
Confidence 35678888999988888899999987777889999999999 66666665554 79999999999987665443
No 211
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=56.57 E-value=17 Score=44.03 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 675 QVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 675 ~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
+.|.+.+-...+..+..+++|.=||-|-.|-.|| +...+|+|+|.++..++.|+
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~ 332 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQ 332 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHH
Confidence 4455666666666667799999999999999999 77899999999999887775
No 212
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=55.93 E-value=23 Score=41.12 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhccCC-CCeEEEEcCccchHhHHHHhc-----CCCeEEEEeCCccccchHHH
Q psy9966 671 SYEVQVMSQVVAAVTNSCD-SSHIIDLGGGQGYLSTILALQ-----HGKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 671 ~hEV~~~s~~v~~l~~~~~-~~~vVD~GsGkGyLsr~La~~-----~~~~V~~IE~~~~~~~gA~~ 730 (1101)
+.|++.|-...+.++...+ ...+||+|||-|.=.+.|-.. .....++||.+....+.|..
T Consensus 57 r~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~ 122 (319)
T TIGR03439 57 NDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLA 122 (319)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHH
Confidence 5677777777777776553 337999999999877755422 24678999999877755543
No 213
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=55.73 E-value=16 Score=39.94 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=23.6
Q ss_pred HHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcc
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQV 723 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~ 723 (1101)
+|..+........|.|+|||-+-|++.+. .+.+|.+.|.-+.
T Consensus 63 iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~ 104 (219)
T PF05148_consen 63 IIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP 104 (219)
T ss_dssp HHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S
T ss_pred HHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC
Confidence 34444444444578899999999998765 5689999998754
No 214
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=53.79 E-value=25 Score=40.10 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=39.3
Q ss_pred hccCCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHh--------cCCCeEEEEeCCccccchHH
Q psy9966 662 VSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILAL--------QHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 662 ~~~~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~--------~~~~~V~~IE~~~~~~~gA~ 729 (1101)
.-++.+|+ .++.++..+........|+|-+||.|.+--.... .....++|+|.++..+.-|.
T Consensus 25 ~G~~~TP~------~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~ 94 (311)
T PF02384_consen 25 LGQFYTPR------EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAK 94 (311)
T ss_dssp CGGC---H------HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHH
T ss_pred cceeehHH------HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHH
Confidence 44556664 3445666666666666899999999998655553 25789999999987665443
No 215
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=51.66 E-value=29 Score=38.62 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=26.5
Q ss_pred CCeEEEEcCccchHhHHHHhcC---------CCeEEEEeCCcccc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH---------GKKTLSLDYNQVNT 725 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~---------~~~V~~IE~~~~~~ 725 (1101)
.-.||++|+|.|.|++-+.... .++++-||.++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 3589999999999998766421 36899999998864
No 216
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=50.61 E-value=8.7 Score=43.85 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCC
Q psy9966 7 GNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYAT 46 (1101)
Q Consensus 7 ~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~ 46 (1101)
.|.+|+|+||-... +....- ..++|+||+|+||..
T Consensus 201 ~g~~i~y~gDt~~~-~~~~~~----~~~adlLi~Eat~~~ 235 (303)
T TIGR02649 201 PGKALAIFGDTGPC-DAALDL----AKGVDVMVHEATLDI 235 (303)
T ss_pred CCcEEEEecCCCCh-HHHHHH----hcCCCEEEEeccCCh
Confidence 57899999998752 112211 248999999999964
No 217
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=49.80 E-value=28 Score=38.24 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=29.8
Q ss_pred CCeEEEEcCccchHhHHHH-hcCCCeEEEEeCCcc
Q psy9966 690 SSHIIDLGGGQGYLSTILA-LQHGKKTLSLDYNQV 723 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La-~~~~~~V~~IE~~~~ 723 (1101)
..+++|+|||-|-=|--|| ..++.+|+-||++..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K 102 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK 102 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch
Confidence 4799999999999999999 457899999999853
No 218
>PLN02823 spermine synthase
Probab=49.34 E-value=21 Score=41.75 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~ 730 (1101)
+.+.|+-+|+|-|+++|.+.... ..+|+.||.++..++-|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~ 145 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRK 145 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence 56789999999999999776443 5689999999998877654
No 219
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=49.05 E-value=23 Score=40.71 Aligned_cols=78 Identities=28% Similarity=0.388 Sum_probs=52.4
Q ss_pred CEEEEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhCCCeEEEeecch
Q psy9966 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFAL 80 (1101)
Q Consensus 1 Mf~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl~~GG~VLIPvFAl 80 (1101)
+.+++.++.++++|||........+.. .-+..++|||..= .|-++...-.+|++.|+- ++ ++.+.
T Consensus 175 Vl~v~~g~~s~LlTGD~e~~~E~~l~~-~~~~l~~dVLkV~------HHGS~tSss~~Fl~~v~P------k~--AliS~ 239 (293)
T COG2333 175 VLRVTFGGNSFLLTGDLEEKGEKLLKK-YGPDLRADVLKVG------HHGSKTSSSLAFLEAVKP------KV--ALISS 239 (293)
T ss_pred EEEEEeCCeeEEEecCCCchhHHHHHh-hCCCccceEEEec------cCCccccCcHHHHHhcCC------cE--EEEEe
Confidence 468899999999999999876644432 2344679999863 334444455678877632 22 55567
Q ss_pred hH-------HHHHHHHHHHH
Q psy9966 81 GR-------AQELCILLETY 93 (1101)
Q Consensus 81 GR-------aQELl~iL~~~ 93 (1101)
|| -++++.-|.+.
T Consensus 240 G~~N~yghPh~~Vl~rl~~~ 259 (293)
T COG2333 240 GRNNRYGHPHQEVLERLQKR 259 (293)
T ss_pred eccCCCCCCcHHHHHHHHhc
Confidence 77 66777777664
No 220
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=49.01 E-value=16 Score=45.14 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=31.4
Q ss_pred CCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCccccchH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~~~~gA 728 (1101)
..-+||+|||+|-..-.+|.. ++..++|||.....+..|
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~ 387 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANV 387 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHH
Confidence 346799999999988888876 689999999986544333
No 221
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=48.29 E-value=10 Score=42.81 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=25.0
Q ss_pred CEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCC
Q psy9966 8 NQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATT 47 (1101)
Q Consensus 8 g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~ 47 (1101)
|++++|+||-...+ ..... ..++|+||+|+||...
T Consensus 200 g~~i~y~gDt~~~~-~~~~~----~~~~dlLi~E~~~~~~ 234 (299)
T TIGR02651 200 GRKIAYTGDTRPCE-EVIEF----AKNADLLIHEATFLDE 234 (299)
T ss_pred CcEEEEecCCCChH-HHHHH----HcCCCEEEEECCCCch
Confidence 67999999987532 11111 2479999999999864
No 222
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=47.76 E-value=19 Score=42.13 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=27.0
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCC
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYN 721 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~ 721 (1101)
...+||+||+-|--+..|. +.|.+|+|||..
T Consensus 212 g~~vlDLGAsPGGWT~~L~-~rG~~V~AVD~g 242 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLV-RRGMFVTAVDNG 242 (357)
T ss_pred CCEEEEeCCCCcHHHHHHH-HcCCEEEEEech
Confidence 4589999999999999999 568899999944
No 223
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=47.65 E-value=32 Score=33.76 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHhccC----CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCC
Q psy9966 669 KKSYEVQVMSQVVAAVTNSC----DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYN 721 (1101)
Q Consensus 669 KK~hEV~~~s~~v~~l~~~~----~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~ 721 (1101)
|-..|=-..|+++-.+.... .....||+|||-|=|--.|.. -|.+=.|||..
T Consensus 34 K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~-EGy~G~GiD~R 89 (112)
T PF07757_consen 34 KHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNS-EGYPGWGIDAR 89 (112)
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHh-CCCCccccccc
Confidence 33456566777777766432 234689999999999999984 58888899874
No 224
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=47.32 E-value=16 Score=39.61 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=30.0
Q ss_pred EEEEcCccchHhHHHHhcCC-CeEEEEeCCccccchHHH
Q psy9966 693 IIDLGGGQGYLSTILALQHG-KKTLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 693 vVD~GsGkGyLsr~La~~~~-~~V~~IE~~~~~~~gA~~ 730 (1101)
|.|+||--|||+..|..+.- -+|++.|.++.-.+.|+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~ 39 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKE 39 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 68999999999999996533 489999999877666653
No 225
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=46.85 E-value=42 Score=37.57 Aligned_cols=95 Identities=26% Similarity=0.327 Sum_probs=55.5
Q ss_pred CEEEEECCEEEEEEcCCCC-CCCCCCCCcccCCCCCcEEEEcC--CCCCCCCCChhHHHHHHHHHHHHHHhCCCeEEEee
Q psy9966 1 MFQVKVGNQSIVYTGDYNM-TPDRHLGAAWIDKCRPDLLITES--TYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPV 77 (1101)
Q Consensus 1 Mf~Ie~~g~rIlYTGDf~~-~~dr~L~~a~ip~~~~DvLI~ES--TYg~~~~~~r~~rE~~f~~~I~etl~~GG~VLIPv 77 (1101)
|+.|+.++.+|+|+.|..- -.+.++ +++-..+||++|+.+ ||-...+-.....|..+ +.+..++.+++..||--
T Consensus 169 ~v~V~dg~~~i~faSDvqGp~~~~~l--~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~i-rNl~~ii~~~~~~lViD 245 (304)
T COG2248 169 MVAVTDGKSSIVFASDVQGPINDEAL--EFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGI-RNLERIIEETNATLVID 245 (304)
T ss_pred EEEEecCCeEEEEcccccCCCccHHH--HHHHhcCCCEEEecCCchhHhhhhcChHHHHHHH-HHHHHHHHhCcceEEEe
Confidence 7889999999999999873 223332 244456999999987 43221112233445444 44556666654555544
Q ss_pred cchhH---HHHHHHHHHHHHHhcC
Q psy9966 78 FALGR---AQELCILLETYWERMN 98 (1101)
Q Consensus 78 FAlGR---aQELl~iL~~~w~~~~ 98 (1101)
--+=| --|.+.-|.+.-++.|
T Consensus 246 HHllRD~~y~e~l~~l~~~~~~~G 269 (304)
T COG2248 246 HHLLRDKNYREFLEELFERAEKAG 269 (304)
T ss_pred ehhhcCCCHHHHHHHHHhhHhhcC
Confidence 43333 3366666666554333
No 226
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=46.77 E-value=24 Score=40.84 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=29.8
Q ss_pred HHHHHHhccCCCCeEEE--EcCccchHhHHHHhcCCCeEEEEeCCccccchH
Q psy9966 679 QVVAAVTNSCDSSHIID--LGGGQGYLSTILALQHGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD--~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA 728 (1101)
+++..+.... ...+|| +|+| ||-...|....+.+|+|+|.++.-.+.|
T Consensus 11 Evl~~L~~~~-~g~~vD~T~G~G-GHS~aiL~~~~~~~li~~DrD~~a~~~a 60 (310)
T PF01795_consen 11 EVLEALNPKP-GGIYVDCTFGGG-GHSKAILEKLPNGRLIGIDRDPEALERA 60 (310)
T ss_dssp HHHHHHT--T-T-EEEETT-TTS-HHHHHHHHT-TT-EEEEEES-HHHHHHH
T ss_pred HHHHhhCcCC-CceEEeecCCcH-HHHHHHHHhCCCCeEEEecCCHHHHHHH
Confidence 4556555332 337899 7888 8887777655669999999998755444
No 227
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=45.50 E-value=24 Score=43.10 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCC
Q psy9966 673 EVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYN 721 (1101)
Q Consensus 673 EV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~ 721 (1101)
=|+.+++++..+....++..++|+|||.|-+|-.|. ..|+.++++-.+
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~-~r~V~t~s~a~~ 148 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLL-ERNVTTMSFAPN 148 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHh-hCCceEEEcccc
Confidence 366666666665566778899999999999998887 578877777554
No 228
>KOG1540|consensus
Probab=44.21 E-value=27 Score=39.20 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=39.0
Q ss_pred HHHHHhccCCCCeEEEEcCccchHhHHHHhc-CC------CeEEEEeCCccccchHHHHhhh
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQ-HG------KKTLSLDYNQVNTHGAAVRSKK 734 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~-~~------~~V~~IE~~~~~~~gA~~r~~k 734 (1101)
+|..+-...+ ..+||+|+|.|-++..+.-. .. -+|+.+|.|+....-|+.|..+
T Consensus 92 ~v~~L~p~~~-m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540|consen 92 FVSKLGPGKG-MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred hhhccCCCCC-CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 3444433333 58999999999999877643 22 6999999999988777666643
No 229
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=41.92 E-value=42 Score=35.46 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=39.4
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhc-CCCe---------EEEEeCCccccchHHH
Q psy9966 676 VMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ-HGKK---------TLSLDYNQVNTHGAAV 730 (1101)
Q Consensus 676 ~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~-~~~~---------V~~IE~~~~~~~gA~~ 730 (1101)
.+|..+-.++...+...|+|=.||.|-+--.-|+. .+.. ++|.|.++..+++|+.
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~ 79 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARE 79 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHH
Confidence 46667777776666678999999999998766643 4555 9999999998887753
No 230
>PRK02126 ribonuclease Z; Provisional
Probab=41.64 E-value=14 Score=43.04 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=26.6
Q ss_pred CCEEEEEEcCCCCCCCCCCCCcccC-CCCCcEEEEcCCCCCC
Q psy9966 7 GNQSIVYTGDYNMTPDRHLGAAWID-KCRPDLLITESTYATT 47 (1101)
Q Consensus 7 ~g~rIlYTGDf~~~~dr~L~~a~ip-~~~~DvLI~ESTYg~~ 47 (1101)
.|++|+|+||-+..++.. . ..+. ..++|+||+|+||...
T Consensus 241 ~g~~v~y~gDT~~~~~~~-~-~l~~~a~~aDlLI~Eat~~~~ 280 (334)
T PRK02126 241 PGQKIGYVTDIGYTEENL-A-RIVELAAGVDLLFIEAVFLDE 280 (334)
T ss_pred CCCEEEEECCCCCCcccH-H-HHHHHHcCCCEEEEEcccChH
Confidence 478999999988654321 0 0011 2479999999999754
No 231
>PRK14532 adenylate kinase; Provisional
Probab=41.53 E-value=16 Score=38.38 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.2
Q ss_pred EcCccchHhHHHHhcCCCeEEEE
Q psy9966 696 LGGGQGYLSTILALQHGKKTLSL 718 (1101)
Q Consensus 696 ~GsGkGyLsr~La~~~~~~V~~I 718 (1101)
-|||||.+|+.||..+|+..+..
T Consensus 9 pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 9 PAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred CCCCHHHHHHHHHHHcCCeEEeC
Confidence 48999999999999999877765
No 232
>KOG3816|consensus
Probab=41.46 E-value=35 Score=39.93 Aligned_cols=63 Identities=25% Similarity=0.376 Sum_probs=45.3
Q ss_pred EEEEEEEEeecCCCCeEEEEEcCCCchhHHHHHHHHHHhh---------ccCCCCCceeeccCceEEEEeccceeeeeEE
Q psy9966 396 IDSVLLSVERIDDKNKRVFVTWPNQDEEVGKIVLHVLKSM---------SNTQGQPFEFYPYTDTVFVLSSSRYVQGTYY 466 (1101)
Q Consensus 396 ~~~v~i~v~~~~~~~~~~~~~W~~~~e~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1101)
+.++.|++| |+..+ .+|| +|..|+..|-+. ..+.-+-|+-||.-|.+|.||-++-..+.|-
T Consensus 347 lN~~hVkmE--Dd~~~-------G~de-~RlfiL~sL~as~~~~V~CvlC~~~L~VfdkyPLVDG~fflSP~~h~~~~~e 416 (526)
T KOG3816|consen 347 LNGIHVKME--DDCPQ-------GGDE-VRLFILKSLGASNLRAVPCVLCKDELKVFDKYPLVDGVFFLSPVSHFGPKTE 416 (526)
T ss_pred ccceEEEec--ccCcC-------CccH-HHHHHHHHhhhhhccccchhhhccchhhhcccccccceEEeccccccCccee
Confidence 467778887 33221 5666 999999888632 1233457999999999999999988777665
Q ss_pred EE
Q psy9966 467 LH 468 (1101)
Q Consensus 467 ~~ 468 (1101)
+-
T Consensus 417 V~ 418 (526)
T KOG3816|consen 417 VS 418 (526)
T ss_pred ee
Confidence 43
No 233
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=40.69 E-value=39 Score=37.29 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=38.9
Q ss_pred ccCCCHHHHHHHHHHhCCCEEEEecCChhHHHHHHHHHHHHcCCceeecCCCCEEEE
Q psy9966 228 SAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFV 284 (1101)
Q Consensus 228 SaHAD~~~l~~~I~~l~Pk~VILVHGe~~~m~~Lk~~L~~e~gi~v~~P~nGe~v~l 284 (1101)
-+|.+.++..++++..+|+++++.|=.+. +....... +.+..++.++..|.++++
T Consensus 196 ~~H~~~~~a~~~a~~~~~k~lvltH~~~~-~~~~~~~~-~~~~~~~~~a~DG~~i~~ 250 (250)
T PRK11244 196 RNHNDLTTALAIIEVLRPPRVILTHISHQ-LDAWLMEN-AALPSGVEVAYDGMEIGL 250 (250)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEEcccCC-cchhhhhh-hhcCCceEEecCccEeeC
Confidence 47999999999999999999999997542 22221122 223345778888887754
No 234
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=40.41 E-value=35 Score=38.61 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCCCCeEEEEcCccc---hHhHHHHh--cCCCeEEEEeCCccccchHH
Q psy9966 677 MSQVVAAVTNSCDSSHIIDLGGGQG---YLSTILAL--QHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 677 ~s~~v~~l~~~~~~~~vVD~GsGkG---yLsr~La~--~~~~~V~~IE~~~~~~~gA~ 729 (1101)
|...|..++...|+.+.||+|||.= +.=. .|. .++.+|+-+|.++.-+..|+
T Consensus 56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHe-vAq~~~P~aRVVYVD~DPvv~ah~r 112 (267)
T PF04672_consen 56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHE-VAQRVAPDARVVYVDNDPVVLAHAR 112 (267)
T ss_dssp HHHHHHHHHCTT---EEEEET--S--SS-HHH-HHHHH-TT-EEEEEESSHHHHHCCH
T ss_pred HHHHHHHHHHhcCcceEEEcccCCCCCCCHhH-HHHhhCCCceEEEECCCchHHHHHH
Confidence 3456777888889999999999964 4322 322 37999999999998665554
No 235
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=39.52 E-value=18 Score=41.50 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=26.3
Q ss_pred EEEE--ECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCC
Q psy9966 2 FQVK--VGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTY 44 (1101)
Q Consensus 2 f~Ie--~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTY 44 (1101)
|+|| .+|++++|++|-..-++....- ..++|+||+|+|+
T Consensus 182 yri~~~~~g~~~~y~tD~~~~~~~~~~~----~~gaDlli~da~~ 222 (302)
T PRK05184 182 LRIEDRATGKRLFYAPGLAEVTDALRAR----LAGADCVLFDGTL 222 (302)
T ss_pred EEEEecCCCcEEEEECCCCCCCHHHHHH----HhcCCEEEEeCCC
Confidence 6785 7788999998864322222111 2478999999994
No 236
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=39.26 E-value=48 Score=39.04 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=28.3
Q ss_pred CeEEEEcCccchHhHHHHhcC---------CCeEEEEeCCcccc
Q psy9966 691 SHIIDLGGGQGYLSTILALQH---------GKKTLSLDYNQVNT 725 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~---------~~~V~~IE~~~~~~ 725 (1101)
..+|++|+|.|+|++-+.... .+++.-||-++.+.
T Consensus 79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~ 122 (370)
T COG1565 79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR 122 (370)
T ss_pred ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH
Confidence 579999999999998765322 68999999998753
No 237
>KOG1975|consensus
Probab=39.10 E-value=33 Score=39.78 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=37.0
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhc-CCC-eEEEEeCCccccchHHHHhhhh
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ-HGK-KTLSLDYNQVNTHGAAVRSKKL 735 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~-~~~-~V~~IE~~~~~~~gA~~r~~kl 735 (1101)
.+|...+... ..+.|+|||||-= .|-.. -|+ .++|||..+..++.|++|-+..
T Consensus 109 ~LI~~y~~~~--~~~~~LgCGKGGD--LlKw~kAgI~~~igiDIAevSI~qa~~RYrdm 163 (389)
T KOG1975|consen 109 VLINLYTKRG--DDVLDLGCGKGGD--LLKWDKAGIGEYIGIDIAEVSINQARKRYRDM 163 (389)
T ss_pred HHHHHHhccc--cccceeccCCccc--HhHhhhhcccceEeeehhhccHHHHHHHHHHH
Confidence 3555555543 4789999999842 22221 344 8999999999999998887643
No 238
>PRK04286 hypothetical protein; Provisional
Probab=38.47 E-value=46 Score=38.14 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=26.4
Q ss_pred EEEEECCEEEEEEcCCCC-CCCCCCCCcccCCCCCcEEEEcC
Q psy9966 2 FQVKVGNQSIVYTGDYNM-TPDRHLGAAWIDKCRPDLLITES 42 (1101)
Q Consensus 2 f~Ie~~g~rIlYTGDf~~-~~dr~L~~a~ip~~~~DvLI~ES 42 (1101)
+.|+.+|++++|+||... -.+.... .+...++|+||.++
T Consensus 171 ~ri~~gg~~~~~~gDt~~~~~~~~~~--~l~~~d~dlLi~~~ 210 (298)
T PRK04286 171 VRISDGDESFVFASDVQGPLNDEAVE--FILEKKPDVVIIGG 210 (298)
T ss_pred EEEEeCCEEEEEECCCCCCCCHHHHH--HHhcCCCCEEEeCC
Confidence 467889999999999983 2221111 11124899999997
No 239
>PRK03839 putative kinase; Provisional
Probab=38.40 E-value=17 Score=37.88 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred cCccchHhHHHHhcCCCeEEEEe
Q psy9966 697 GGGQGYLSTILALQHGKKTLSLD 719 (1101)
Q Consensus 697 GsGkGyLsr~La~~~~~~V~~IE 719 (1101)
||||+.+|+.||-.+|++++.+|
T Consensus 10 GsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 10 GVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred CCCHHHHHHHHHHHhCCcEEehh
Confidence 99999999999998999886665
No 240
>PRK10742 putative methyltransferase; Provisional
Probab=38.39 E-value=44 Score=37.50 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=28.4
Q ss_pred eEEEEcCccchHhHHHHhcCCCeEEEEeCCcc
Q psy9966 692 HIIDLGGGQGYLSTILALQHGKKTLSLDYNQV 723 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~ 723 (1101)
+|+|.-+|.|-.|-.+|.. |.+|++||.++.
T Consensus 91 ~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~ 121 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-GCRVRMLERNPV 121 (250)
T ss_pred EEEECCCCccHHHHHHHHc-CCEEEEEECCHH
Confidence 8999999999999999954 888999999975
No 241
>PTZ00088 adenylate kinase 1; Provisional
Probab=37.42 E-value=18 Score=40.00 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.7
Q ss_pred cCccchHhHHHHhcCCCeEEEEe
Q psy9966 697 GGGQGYLSTILALQHGKKTLSLD 719 (1101)
Q Consensus 697 GsGkGyLsr~La~~~~~~V~~IE 719 (1101)
|||||.+|+.||..||+.+++++
T Consensus 16 GsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 16 GVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCCHHHHHHHHHHHhCCcEEECC
Confidence 67999999999999999888775
No 242
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=36.76 E-value=20 Score=37.25 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred cCccchHhHHHHhcCCCeEEEE
Q psy9966 697 GGGQGYLSTILALQHGKKTLSL 718 (1101)
Q Consensus 697 GsGkGyLsr~La~~~~~~V~~I 718 (1101)
||||+.+++.||..+|+.++..
T Consensus 9 GsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 9 GSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred CCCHHHHHHHHHHHcCCeEEEC
Confidence 8999999999999999877665
No 243
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=36.39 E-value=32 Score=35.65 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=24.8
Q ss_pred cccCCCHHHHHHHHHHhCCCEEEEec
Q psy9966 227 FSAHADAKGIMQLIQYCEPKNVLLVH 252 (1101)
Q Consensus 227 fSaHAD~~~l~~~I~~l~Pk~VILVH 252 (1101)
-+.|.+.+++.++++.++|+++|++|
T Consensus 168 ~~~h~~~~~~~~~~~~~~~~~~il~H 193 (194)
T PF12706_consen 168 GPGHMTLEEALELAKELKAKKVILIH 193 (194)
T ss_dssp CTTSBBHHHHHHHHHHHTTSEEEEES
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 38899999999999999999999999
No 244
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=36.35 E-value=39 Score=31.47 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=23.6
Q ss_pred EEEEcCccchHhHHHHhcCC--CeEEEEeCCcccc
Q psy9966 693 IIDLGGGQGYLSTILALQHG--KKTLSLDYNQVNT 725 (1101)
Q Consensus 693 vVD~GsGkGyLsr~La~~~~--~~V~~IE~~~~~~ 725 (1101)
++|+|||.|+.. .++...+ ..++|+|.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~ 85 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEML 85 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHH
Confidence 899999999977 3332222 5899999887644
No 245
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=34.63 E-value=70 Score=35.29 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=31.3
Q ss_pred eEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchH
Q psy9966 692 HIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA 728 (1101)
++.|+||--|||+..|-.+. ...+++.|.++.-...|
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a 56 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESA 56 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHH
Confidence 59999999999999999764 56899999988766555
No 246
>PRK11524 putative methyltransferase; Provisional
Probab=34.01 E-value=68 Score=36.41 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHhh
Q psy9966 675 QVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRSK 733 (1101)
Q Consensus 675 ~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~~ 733 (1101)
+.+..+|...+...+ .|+|--+|.|--+-+ |.+.|.+.+|+|.++..++-|.+|-.
T Consensus 196 ~L~erlI~~~S~~GD--~VLDPF~GSGTT~~A-A~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 196 ALLKRIILASSNPGD--IVLDPFAGSFTTGAV-AKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHhCCCCC--EEEECCCCCcHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 334456666665554 799998888866443 44689999999999999999988753
No 247
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=33.99 E-value=24 Score=36.91 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.6
Q ss_pred EcCccchHhHHHHhcCCCeEEEEe
Q psy9966 696 LGGGQGYLSTILALQHGKKTLSLD 719 (1101)
Q Consensus 696 ~GsGkGyLsr~La~~~~~~V~~IE 719 (1101)
-||||+.+++.||..+|+.++.+|
T Consensus 8 pGsGKst~a~~La~~~~~~~i~~~ 31 (194)
T cd01428 8 PGSGKGTQAERLAKKYGLPHISTG 31 (194)
T ss_pred CCCCHHHHHHHHHHHcCCeEEECc
Confidence 489999999999999998876653
No 248
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=33.81 E-value=50 Score=35.19 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=25.9
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcccc
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~ 725 (1101)
....++|+.||.|-+|-.-.+.--.+|+.||.|...+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~ 78 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI 78 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH
Confidence 3568999999999999864334446999999997644
No 249
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=33.51 E-value=26 Score=37.94 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHhh
Q psy9966 677 MSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRSK 733 (1101)
Q Consensus 677 ~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~~ 733 (1101)
+|.++..-.+....+.|+|+|||.|--+-+-|..--..|++.|+.+. +..|...|.
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~-~~~ai~lNa 122 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW-LEQAIRLNA 122 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChH-HHHHhhcch
Confidence 44555555555567899999999998888777655678999999864 445555554
No 250
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=33.42 E-value=53 Score=35.92 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=35.2
Q ss_pred ccCCCHHHHHHHHHHhCCCEEEEecCChhHHHHHHHHHHHHcCCceeecCCCCE
Q psy9966 228 SAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGES 281 (1101)
Q Consensus 228 SaHAD~~~l~~~I~~l~Pk~VILVHGe~~~m~~Lk~~L~~e~gi~v~~P~nGe~ 281 (1101)
-+|.+.+++.++++..+|+++|++|=... +..+...... ...++++++.|.+
T Consensus 186 ~~H~~~~~~~~~~~~~~~~~lil~H~~~~-~~~~~~~~~~-~~~~~~~a~DG~~ 237 (238)
T TIGR03307 186 RNHNDLTRALAINEQLRPKQVILTHISHQ-LDAWLMENPD-LPSGVAVGYDGQT 237 (238)
T ss_pred CCcCCHHHHHHHHHHcCCCEEEEEecccc-cchHHHhhhh-cCCceEEeccccc
Confidence 46999999999999999999999998653 2211111111 2234667777765
No 251
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=33.40 E-value=68 Score=33.97 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=35.0
Q ss_pred HHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 677 MSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 677 ~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
+..+|...++..+ .|+|.=+|.|--+.+ |.+.|.+.+|+|.++..++-|+
T Consensus 181 ~~~lI~~~t~~gd--iVlDpF~GSGTT~~a-a~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 181 IERLIKASTNPGD--IVLDPFAGSGTTAVA-AEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHS-TT---EEEETT-TTTHHHHH-HHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHhhhccce--eeehhhhccChHHHH-HHHcCCeEEEEeCCHHHHHHhc
Confidence 3356666555544 799999999987654 3478999999999998887765
No 252
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=33.39 E-value=85 Score=34.03 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=44.5
Q ss_pred CCCCcEEEEcCCC---CCCCCCChh--HHHHHHHHHHHHHHhCCCeEEEeecchhHHHHHHHHHHHHHH
Q psy9966 32 KCRPDLLITESTY---ATTIRDSKR--CRERDFLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWE 95 (1101)
Q Consensus 32 ~~~~DvLI~ESTY---g~~~~~~r~--~rE~~f~~~I~etl~~GG~VLIPvFAlGRaQELl~iL~~~w~ 95 (1101)
...+|+++++... |.+..+... ..-.++++.+..+|+.||.++|-+|.-++.++++..+..++.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~ 183 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFT 183 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCce
Confidence 4579999997632 211110000 011457788888999999999999988999999988877765
No 253
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=32.92 E-value=73 Score=32.19 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhc-CCCeEEEEeCCcc
Q psy9966 675 QVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQ-HGKKTLSLDYNQV 723 (1101)
Q Consensus 675 ~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~-~~~~V~~IE~~~~ 723 (1101)
..+|++++..... ..||++|-|. |+.-+.+++ .|..|+++|.++.
T Consensus 2 ~~~a~~ia~~~~~---~kiVEVGiG~-~~~vA~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 2 VDFAEYIARLNNY---GKIVEVGIGF-NPEVAKKLKERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHHS-S---SEEEEET-TT---HHHHHHHHHS-EEEEE-SS-S
T ss_pred chHHHHHHHhCCC---CcEEEECcCC-CHHHHHHHHHcCCcEEEEECccc
Confidence 3567777775543 3899999994 555555544 7999999999975
No 254
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=32.59 E-value=1.2e+02 Score=31.88 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=41.3
Q ss_pred CCCCCcEEEEcCC---CCCCCCCChh--HHHHHHHHHHHHHHhCCCeEEEeecchhHHHHHHHHHHHHH
Q psy9966 31 DKCRPDLLITEST---YATTIRDSKR--CRERDFLKKVHECVDRGGKVLIPVFALGRAQELCILLETYW 94 (1101)
Q Consensus 31 p~~~~DvLI~EST---Yg~~~~~~r~--~rE~~f~~~I~etl~~GG~VLIPvFAlGRaQELl~iL~~~w 94 (1101)
+..++|++++++. .|........ +.-..+++.+.+.++.||++++-++...+.-+++..+...+
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~ 163 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLF 163 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhh
Confidence 3457999999764 2322111111 12256778888899999999997776666667776665543
No 255
>PRK14531 adenylate kinase; Provisional
Probab=32.52 E-value=24 Score=37.06 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.1
Q ss_pred EcCccchHhHHHHhcCCCeEEEE
Q psy9966 696 LGGGQGYLSTILALQHGKKTLSL 718 (1101)
Q Consensus 696 ~GsGkGyLsr~La~~~~~~V~~I 718 (1101)
=|||||.+|+.||..+|+..+..
T Consensus 11 pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 11 PGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred CCCCHHHHHHHHHHHhCCCeEec
Confidence 48999999999999999877654
No 256
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=32.50 E-value=60 Score=36.77 Aligned_cols=41 Identities=17% Similarity=0.090 Sum_probs=28.0
Q ss_pred CCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA~ 729 (1101)
...+|+|+|||-|--.-+...-+ -..+++||.++....-|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~ 75 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK 75 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH
Confidence 46689999999986443333223 368899999877654443
No 257
>KOG4300|consensus
Probab=32.17 E-value=52 Score=35.99 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHh
Q psy9966 674 VQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 674 V~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
-+.|+.+-.-+-+++. ..|+++|||.|--=.++-..++.+|++||.|+..-+-|.++.
T Consensus 62 relFs~i~~~~gk~~K-~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~ 119 (252)
T KOG4300|consen 62 RELFSGIYYFLGKSGK-GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSA 119 (252)
T ss_pred HHHHhhhHHHhcccCc-cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHH
Confidence 3445554322223332 368999999998766666668999999999987665555444
No 258
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=31.87 E-value=1.3e+02 Score=27.85 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhccCCCCeEEEEcCccch-HhHH--HHhcCCCeEEEEeCC
Q psy9966 672 YEVQVMSQVVAAVTNSCDSSHIIDLGGGQGY-LSTI--LALQHGKKTLSLDYN 721 (1101)
Q Consensus 672 hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGy-Lsr~--La~~~~~~V~~IE~~ 721 (1101)
.+|+++-++|.+-....+.+.|+=+||-.|| |+.. +|+.+|...+||-..
T Consensus 21 ~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 21 RNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 4677777777775555677899999999998 6644 445678999988543
No 259
>PRK00685 metal-dependent hydrolase; Provisional
Probab=31.53 E-value=70 Score=34.47 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=25.2
Q ss_pred EEEEECCEEEEEEcCCCCCCCCCCCCcccC-CCCCcEEEEcC
Q psy9966 2 FQVKVGNQSIVYTGDYNMTPDRHLGAAWID-KCRPDLLITES 42 (1101)
Q Consensus 2 f~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip-~~~~DvLI~ES 42 (1101)
|.|+.++++|+||||-...++.. .+. ..++|++++..
T Consensus 128 ~~i~~~~~~i~~~GDt~~~~~~~----~~~~~~~~D~~~~~~ 165 (228)
T PRK00685 128 FVITFEGKTIYHAGDTGLFSDMK----LIGELHKPDVALLPI 165 (228)
T ss_pred EEEEECCeEEEEecCccchhHHH----HHHHhhCCCEEEEec
Confidence 68899999999999976533211 111 13679999864
No 260
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=31.36 E-value=91 Score=35.55 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=42.4
Q ss_pred ccCCCHHHHHHHHHHhCCCEEEEecCChh----HHHHHHHHHHHHcCCceeecCCCCEEEE
Q psy9966 228 SAHADAKGIMQLIQYCEPKNVLLVHGEAS----KMVFLKEKIKQEFNLDCFMPANGESCFV 284 (1101)
Q Consensus 228 SaHAD~~~l~~~I~~l~Pk~VILVHGe~~----~m~~Lk~~L~~e~gi~v~~P~nGe~v~l 284 (1101)
.+|....+..++.+..++++++|+|=.++ ....+.+..++.+. .+++++.|.++.+
T Consensus 244 ~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~~~~-~~~~a~d~~~~~~ 303 (303)
T TIGR02649 244 RGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFP-ATELANDFTVFNV 303 (303)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHHHCC-CCEecccccEEeC
Confidence 58999999999999999999999996542 23445555555564 4778888887753
No 261
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=31.31 E-value=85 Score=38.52 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHHHHHh--ccCCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccchH
Q psy9966 679 QVVAAVT--NSCDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 679 ~~v~~l~--~~~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~gA 728 (1101)
.+++.+. .......|+|+|||-|--+..||... .-.|++.|.++......
T Consensus 101 ~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L 154 (470)
T PRK11933 101 MLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVL 154 (470)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence 3444444 33445689999999999999999764 24899999997655333
No 262
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=31.31 E-value=52 Score=38.58 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=47.3
Q ss_pred cCCCcchHHHHHHHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCe-EEEEeCCccccchHHHHhhhhh
Q psy9966 664 QLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKK-TLSLDYNQVNTHGAAVRSKKLE 736 (1101)
Q Consensus 664 ~~mn~KK~hEV~~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~-V~~IE~~~~~~~gA~~r~~kl~ 736 (1101)
..-||+=.-|=.++++.+.. ...|+|.=||-||.|-.+| .+|.. |+|+|.|+.-++..+ +|-+|.
T Consensus 169 v~Fsprl~~ER~Rva~~v~~------GE~V~DmFAGVGpfsi~~A-k~g~~~V~A~diNP~A~~~L~-eNi~LN 234 (341)
T COG2520 169 VYFSPRLSTERARVAELVKE------GETVLDMFAGVGPFSIPIA-KKGRPKVYAIDINPDAVEYLK-ENIRLN 234 (341)
T ss_pred eEECCCchHHHHHHHhhhcC------CCEEEEccCCcccchhhhh-hcCCceEEEEecCHHHHHHHH-HHHHhc
Confidence 34466666777776666553 4589999999999999988 56665 999999998765543 444443
No 263
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.12 E-value=58 Score=32.40 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=30.4
Q ss_pred HHHHHHHhccCCCCeEEEEcCcc-chHhHHHHhcCCCeEEEEeCCcc
Q psy9966 678 SQVVAAVTNSCDSSHIIDLGGGQ-GYLSTILALQHGKKTLSLDYNQV 723 (1101)
Q Consensus 678 s~~v~~l~~~~~~~~vVD~GsGk-GyLsr~La~~~~~~V~~IE~~~~ 723 (1101)
+.+++.... +..||++|-|- =+.+..|+ ++|..|+++|.++.
T Consensus 5 a~~iAre~~---~gkVvEVGiG~~~~VA~~L~-e~g~dv~atDI~~~ 47 (129)
T COG1255 5 AEYIARENA---RGKVVEVGIGFFLDVAKRLA-ERGFDVLATDINEK 47 (129)
T ss_pred HHHHHHHhc---CCcEEEEccchHHHHHHHHH-HcCCcEEEEecccc
Confidence 445554432 34899999993 35567777 68999999999975
No 264
>PRK02113 putative hydrolase; Provisional
Probab=30.79 E-value=94 Score=34.23 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=41.2
Q ss_pred cccCCCHHHHHHHHHHhCCCEEEEecCChhHHHHHHHHHHHHcCCceeecCCCCEEEE
Q psy9966 227 FSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFV 284 (1101)
Q Consensus 227 fSaHAD~~~l~~~I~~l~Pk~VILVHGe~~~m~~Lk~~L~~e~gi~v~~P~nGe~v~l 284 (1101)
..+|.+.++..+++++.+|++++++|=... +... ..+.+.++.+++++..|.++++
T Consensus 197 ~~~H~t~~~a~~~~~~~~~k~l~l~H~s~~-~~~~-~~~~~~~~~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 197 HPTHQSLEEALENIKRIGAKETYLIHMSHH-IGLH-ADVEKELPPHVHFAYDGLEIIF 252 (252)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEEEccccc-chhH-HHHHHhCCCCceeccCceEEeC
Confidence 468999999999999999999999995322 1122 2455556656778888877753
No 265
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=30.75 E-value=27 Score=37.55 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.5
Q ss_pred EcCccchHhHHHHhcCCCeEEEE
Q psy9966 696 LGGGQGYLSTILALQHGKKTLSL 718 (1101)
Q Consensus 696 ~GsGkGyLsr~La~~~~~~V~~I 718 (1101)
=|||||.+++.||..||+.++..
T Consensus 8 pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 8 PGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred CCCCHHHHHHHHHHHcCCCeeeh
Confidence 38999999999999999988875
No 266
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=30.07 E-value=56 Score=35.63 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=29.2
Q ss_pred CCeEEEEcCccchHhHHHHhcCC--CeEEEEeCCcc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHG--KKTLSLDYNQV 723 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~--~~V~~IE~~~~ 723 (1101)
...|||+||--|.-++.+|-.-+ -+|+|||.++.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~ 81 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM 81 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc
Confidence 56899999999999999997654 45999999975
No 267
>PRK06217 hypothetical protein; Validated
Probab=29.82 E-value=32 Score=36.19 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.0
Q ss_pred EcCccchHhHHHHhcCCCeEEEEe
Q psy9966 696 LGGGQGYLSTILALQHGKKTLSLD 719 (1101)
Q Consensus 696 ~GsGkGyLsr~La~~~~~~V~~IE 719 (1101)
-||||..||+.||...|++++..|
T Consensus 10 ~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 10 SGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred CCCCHHHHHHHHHHHcCCcEEEcC
Confidence 489999999999998998876665
No 268
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=29.67 E-value=2.6e+02 Score=27.14 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=33.4
Q ss_pred cCCCHHHHHHHHHHhCCCEEEEecCChhHHHHHHHHHHHHcCCceeecC
Q psy9966 229 AHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPA 277 (1101)
Q Consensus 229 aHAD~~~l~~~I~~l~Pk~VILVHGe~~~m~~Lk~~L~~e~gi~v~~P~ 277 (1101)
.-.|.+++.+|.+..+.+ +++|--|..-...+.+.|++ .|++|+-|.
T Consensus 47 ~~~d~~~l~~~a~~~~id-lvvvGPE~pL~~Gl~D~l~~-~gi~vfGP~ 93 (100)
T PF02844_consen 47 DITDPEELADFAKENKID-LVVVGPEAPLVAGLADALRA-AGIPVFGPS 93 (100)
T ss_dssp -TT-HHHHHHHHHHTTES-EEEESSHHHHHTTHHHHHHH-TT-CEES--
T ss_pred CCCCHHHHHHHHHHcCCC-EEEECChHHHHHHHHHHHHH-CCCcEECcC
Confidence 448999999999999998 44555566677788888875 589998874
No 269
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=29.51 E-value=51 Score=36.22 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=34.5
Q ss_pred CCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHh
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRS 732 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~ 732 (1101)
+....+|.|||-|-.+.-|-+++=-+|-.||-.+.+++.|++.-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l 98 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYL 98 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHT
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHh
Confidence 46689999999999999888788789999999999998887543
No 270
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=29.48 E-value=1e+02 Score=32.85 Aligned_cols=41 Identities=12% Similarity=0.274 Sum_probs=32.0
Q ss_pred cCCCCeEEEEcCccchHhHHHHhc--CCCeEEEEeCCccccch
Q psy9966 687 SCDSSHIIDLGGGQGYLSTILALQ--HGKKTLSLDYNQVNTHG 727 (1101)
Q Consensus 687 ~~~~~~vVD~GsGkGyLsr~La~~--~~~~V~~IE~~~~~~~g 727 (1101)
......|+++|.|.|-+++++-.. ..-.+++||.+....+.
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~ 88 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH 88 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH
Confidence 334568999999999999988743 24689999999887633
No 271
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=29.36 E-value=58 Score=36.56 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=32.0
Q ss_pred HHHHHHhccCC-CCeEEEEcCccchHhHHHH-hcCCCeEEEEeCCccccc
Q psy9966 679 QVVAAVTNSCD-SSHIIDLGGGQGYLSTILA-LQHGKKTLSLDYNQVNTH 726 (1101)
Q Consensus 679 ~~v~~l~~~~~-~~~vVD~GsGkGyLsr~La-~~~~~~V~~IE~~~~~~~ 726 (1101)
.+...+...++ ...|+|+|||.+=|+--.- ...+..++|+|.|...++
T Consensus 94 ~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve 143 (251)
T PF07091_consen 94 EFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVE 143 (251)
T ss_dssp HHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHH
T ss_pred HHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHH
Confidence 45555555544 6799999999999976433 345889999999977653
No 272
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=28.16 E-value=1.2e+02 Score=34.30 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=41.0
Q ss_pred ccCCCHHHHHHHHHHhCCCEEEEecCChh--HHHHHHHHHHHHcCCceeecCCCCEEEE
Q psy9966 228 SAHADAKGIMQLIQYCEPKNVLLVHGEAS--KMVFLKEKIKQEFNLDCFMPANGESCFV 284 (1101)
Q Consensus 228 SaHAD~~~l~~~I~~l~Pk~VILVHGe~~--~m~~Lk~~L~~e~gi~v~~P~nGe~v~l 284 (1101)
.+|...++..++.+..++++++|.|=.++ ....+.+.+.+.++ ++..+..|.++++
T Consensus 242 ~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~~~~~~~~~~~~~~-~~~~a~dg~~~~~ 299 (299)
T TIGR02651 242 YGHSTAAQAAEIAKEANVKRLILTHISPRYSDEEELLEEAKKIFP-NTYIAEDFMEIEI 299 (299)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEecccccCChHHHHHHHHHhCC-CcEEccCccEeeC
Confidence 68999999999999999999999995432 13344444444443 6788888887753
No 273
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=27.75 E-value=84 Score=34.64 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=31.5
Q ss_pred CCCeEEEEcCccchHhHHHHhcCC---CeEEEEeCCccccchHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQHG---KKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~~---~~V~~IE~~~~~~~gA~ 729 (1101)
+.-.+=|=|||.|||-.+|++-|+ ..|+|-|.|+.-.+-|.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~ 94 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELAR 94 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHH
Confidence 455778999999999999999875 47889999988766664
No 274
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.48 E-value=29 Score=36.97 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=18.6
Q ss_pred ccchHhHHHHhc---CCCeEEEEeCCcccc
Q psy9966 699 GQGYLSTILALQ---HGKKTLSLDYNQVNT 725 (1101)
Q Consensus 699 GkGyLsr~La~~---~~~~V~~IE~~~~~~ 725 (1101)
|.||+|-.+|.. .|.+|+|+|.|+..+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v 36 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKV 36 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHH
Confidence 788998888754 699999999997644
No 275
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.32 E-value=2.8e+02 Score=27.92 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=44.3
Q ss_pred EecccCCCHHHHHHHHHHhCCCEEE-------EecCChhHHHHHHHHHHHHcCCceeecCCC
Q psy9966 225 MSFSAHADAKGIMQLIQYCEPKNVL-------LVHGEASKMVFLKEKIKQEFNLDCFMPANG 279 (1101)
Q Consensus 225 i~fSaHAD~~~l~~~I~~l~Pk~VI-------LVHGe~~~m~~Lk~~L~~e~gi~v~~P~nG 279 (1101)
++-|+-....++.++|..++|.-.| ++||+.+....+.+++++..+..+|.-..|
T Consensus 11 lapsa~vsp~elv~~l~~~~~PvtiKeTCfGaii~G~Ed~v~klveriR~~d~~~IF~KdRG 72 (142)
T COG4029 11 LAPSAGVSPKELVQKLLELSPPVTIKETCFGAIIDGPEDEVRKLVERIRELDGNAIFSKDRG 72 (142)
T ss_pred EcCccCcChHHHHHHHHhcCCCeEeeeeeeeeeecCcHHHHHHHHHHHHHhccCceeecccC
Confidence 4568889999999999999988443 689999999999999998776666655444
No 276
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=27.28 E-value=62 Score=40.05 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=33.1
Q ss_pred CCeEEEEcCccchHhHHHHhcC---------CCeEEEEeCCccccchHHHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQH---------GKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~---------~~~V~~IE~~~~~~~gA~~r 731 (1101)
...|+|-|||.|-+...++... ...++|+|.++..+..|...
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 4589999999999998887532 26889999999887766543
No 277
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=27.07 E-value=37 Score=34.32 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.7
Q ss_pred cCccchHhHHHHhcCCCeEEEE
Q psy9966 697 GGGQGYLSTILALQHGKKTLSL 718 (1101)
Q Consensus 697 GsGkGyLsr~La~~~~~~V~~I 718 (1101)
|||||-+++.||..||+..+++
T Consensus 6 gsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 6 GSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp TSSHHHHHHHHHHHHTSEEEEH
T ss_pred CCChHHHHHHHHHhcCcceech
Confidence 8999999999999999876664
No 278
>PRK14528 adenylate kinase; Provisional
Probab=27.05 E-value=34 Score=36.28 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.4
Q ss_pred EcCccchHhHHHHhcCCCeEEEE
Q psy9966 696 LGGGQGYLSTILALQHGKKTLSL 718 (1101)
Q Consensus 696 ~GsGkGyLsr~La~~~~~~V~~I 718 (1101)
-||||+.+++.||..||++++.+
T Consensus 10 pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 10 PGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCeeeC
Confidence 58899999999998899888765
No 279
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=26.97 E-value=38 Score=32.49 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.7
Q ss_pred cCccchHhHHHHhcCCCeEEEEeC
Q psy9966 697 GGGQGYLSTILALQHGKKTLSLDY 720 (1101)
Q Consensus 697 GsGkGyLsr~La~~~~~~V~~IE~ 720 (1101)
||||-.+++.||-.+|++++.+|-
T Consensus 9 gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 9 GSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp TSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CCCHHHHHHHHHHHHCCeEEEecc
Confidence 899999999999889999987764
No 280
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=26.34 E-value=1.4e+02 Score=35.69 Aligned_cols=89 Identities=21% Similarity=0.230 Sum_probs=60.6
Q ss_pred HHHHHHH-hCCCCCCeEEEecccCCCcchhhhhcCcceEEecCCeeEEEeeEEEEEecccCCCHHHHHHHHHHhCCCEEE
Q psy9966 171 SLIIFKK-WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVL 249 (1101)
Q Consensus 171 s~~~~~~-w~~d~~N~VI~tGy~~~GT~g~~Ll~g~k~i~l~~g~~i~v~~~V~~i~fSaHAD~~~l~~~I~~l~Pk~VI 249 (1101)
+.++.-+ ..-.|.+-||.|.+.-..|..--+..|++.+-. .|+. -|.--|.+.+.+-|..- +|-||
T Consensus 61 AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFv----------Did~--~T~nid~~~ie~aIt~~-tKAIi 127 (374)
T COG0399 61 ALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFV----------DIDP--DTLNIDPDLIEAAITPR-TKAII 127 (374)
T ss_pred HHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEE----------ecCC--cccCCCHHHHHHHcccC-CeEEE
Confidence 4444332 245788899999887766665566666654432 2221 22337888888877766 89999
Q ss_pred Eec--CChhHHHHHHHHHHHHcCCce
Q psy9966 250 LVH--GEASKMVFLKEKIKQEFNLDC 273 (1101)
Q Consensus 250 LVH--Ge~~~m~~Lk~~L~~e~gi~v 273 (1101)
+|| |.+-.|..+. +|.+++|+.|
T Consensus 128 pVhl~G~~~dm~~i~-~la~~~~l~v 152 (374)
T COG0399 128 PVHLAGQPCDMDAIM-ALAKRHGLPV 152 (374)
T ss_pred EehhccCCCCHHHHH-HHHHHcCCeE
Confidence 996 7888999998 5888888765
No 281
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=26.22 E-value=1.2e+02 Score=33.87 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=34.3
Q ss_pred CCCeEEEEcCccchHhHHHHhcC-CCeEEEEeCCccccchHHHH
Q psy9966 689 DSSHIIDLGGGQGYLSTILALQH-GKKTLSLDYNQVNTHGAAVR 731 (1101)
Q Consensus 689 ~~~~vVD~GsGkGyLsr~La~~~-~~~V~~IE~~~~~~~gA~~r 731 (1101)
..+.|+=+|.|-|-+.|.|...+ ..+|+.||.++.-++.|++.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~ 119 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKY 119 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHh
Confidence 57799999999999999998554 46999999999988777654
No 282
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=26.19 E-value=1.4e+02 Score=31.08 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=42.2
Q ss_pred CCcEEEEcCCCCCCCCCCh---------------hHHHHHHHHHHHHHHhCCCeEEEeecchhHHHHHHHHHHHH
Q psy9966 34 RPDLLITESTYATTIRDSK---------------RCRERDFLKKVHECVDRGGKVLIPVFALGRAQELCILLETY 93 (1101)
Q Consensus 34 ~~DvLI~ESTYg~~~~~~r---------------~~rE~~f~~~I~etl~~GG~VLIPvFAlGRaQELl~iL~~~ 93 (1101)
..|++|+...|.....+.+ ...-.+|++.+.+.++.||++++........++++..|.+.
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~ 156 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDER 156 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhC
Confidence 6899999988853321100 11235788888899999999998887666678888777653
No 283
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=26.02 E-value=1.7e+02 Score=31.41 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHh---ccCCCCeEEEEcCccc---------hHhHHHHhcCCCeEEEEeCCccc
Q psy9966 670 KSYEVQVMSQVVAAVT---NSCDSSHIIDLGGGQG---------YLSTILALQHGKKTLSLDYNQVN 724 (1101)
Q Consensus 670 K~hEV~~~s~~v~~l~---~~~~~~~vVD~GsGkG---------yLsr~La~~~~~~V~~IE~~~~~ 724 (1101)
...|.++|..-+...+ ...+...+|=+.|+|| .|+..||...|.+|+.||++...
T Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 11 IAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred HHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 3445566655555433 2223346777776665 35666665569999999999753
No 284
>PRK02113 putative hydrolase; Provisional
Probab=25.84 E-value=50 Score=36.42 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCC
Q psy9966 9 QSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYA 45 (1101)
Q Consensus 9 ~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg 45 (1101)
++++|+||....++..+. ...++|+||+|+++.
T Consensus 162 ~~i~y~~Dt~~~~~~~~~----~~~~~DlLi~e~~~~ 194 (252)
T PRK02113 162 GKMAYITDMLTMPEEEYE----QLQGIDVLVMNALRI 194 (252)
T ss_pred CCEEEccCCCCCCHHHHH----HhcCCCEEEEhhhcC
Confidence 479999998743322221 124789999999873
No 285
>PHA01634 hypothetical protein
Probab=25.74 E-value=77 Score=32.21 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=29.8
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcccc
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~ 725 (1101)
.+.|+|+|++-|-=+-..++.-...|+++|-++...
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~ 64 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR 64 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH
Confidence 578999999999877777776678999999887544
No 286
>KOG2940|consensus
Probab=25.11 E-value=73 Score=35.33 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=25.9
Q ss_pred CeEEEEcCccchHhHHHHhcCCCeEEEEeCCccc
Q psy9966 691 SHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVN 724 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~ 724 (1101)
..+.|+|||.||++|.|--.--=+++-+|-+...
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M 107 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDM 107 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHH
Confidence 3689999999999999985443467777776543
No 287
>PRK11539 ComEC family competence protein; Provisional
Probab=24.52 E-value=1.1e+02 Score=39.93 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=46.5
Q ss_pred EEEEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhCCCeEEEeecchh
Q psy9966 2 FQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFALG 81 (1101)
Q Consensus 2 f~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl~~GG~VLIPvFAlG 81 (1101)
++|+.++.++++|||...+..+.+-...-...++|+|..= -.| ++...-.+|++.++ ..-++|. .|
T Consensus 625 l~i~~~~~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~vp-HHG-----S~tSss~~fl~~v~-----P~~aiiS---~g 690 (755)
T PRK11539 625 IRVDDGKHSILLTGDLEAQAEQKLLSRYWQQLAATLLQVP-HHG-----SNTSSSLPFIRAVN-----GKVALAS---AS 690 (755)
T ss_pred EEEEECCEEEEEEeCCChHHHHHHHhcCccCcCCCEEEeC-CCC-----CCCCChHHHHHhcC-----CCEEEEe---CC
Confidence 5788999999999999876444332211123478988862 233 33334456777653 3344543 34
Q ss_pred H-------HHHHHHHHHHH
Q psy9966 82 R-------AQELCILLETY 93 (1101)
Q Consensus 82 R-------aQELl~iL~~~ 93 (1101)
| ..|++.-+++.
T Consensus 691 ~~NryghP~~~v~~rl~~~ 709 (755)
T PRK11539 691 RYNAWRLPSVKVKQRYQQQ 709 (755)
T ss_pred CCCCCCCCCHHHHHHHHHc
Confidence 4 55777666654
No 288
>KOG1663|consensus
Probab=24.27 E-value=1.3e+02 Score=33.42 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=36.0
Q ss_pred HHHHHhccCCCCeEEEEcCccch--HhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 680 VVAAVTNSCDSSHIIDLGGGQGY--LSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 680 ~v~~l~~~~~~~~vVD~GsGkGy--Lsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
+++-+.+..+.+.++|+|.=.|| |+-+||...+=+|+++|.|+...+-+.
T Consensus 64 fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~ 115 (237)
T KOG1663|consen 64 FLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL 115 (237)
T ss_pred HHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH
Confidence 34444444457789999976666 666666778999999999987665553
No 289
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=23.96 E-value=1.5e+02 Score=33.91 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=36.5
Q ss_pred HHHHHHhccCCCCeEEEEcCccchHhHHHHhcC--CCeEEEEeCCccccc
Q psy9966 679 QVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH--GKKTLSLDYNQVNTH 726 (1101)
Q Consensus 679 ~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~--~~~V~~IE~~~~~~~ 726 (1101)
.+++.+........|+|.|||-|-=+..||... .-.|++.|.+...+.
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~ 124 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLK 124 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHH
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHH
Confidence 345555566666789999999998888888654 369999999976443
No 290
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=23.80 E-value=1.7e+02 Score=29.32 Aligned_cols=63 Identities=11% Similarity=0.174 Sum_probs=37.0
Q ss_pred EEEEECCEEEEEEcCCCCCCCCCCCCcccCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhCCCeEEEee
Q psy9966 2 FQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPV 77 (1101)
Q Consensus 2 f~Ie~~g~rIlYTGDf~~~~dr~L~~a~ip~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl~~GG~VLIPv 77 (1101)
+.+..++++++||||............ + ....+... .....-....+.+....+....+++|.
T Consensus 131 ~~~~~~~~~vlftGD~~~~~~~~~~~~-------~----~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ii~g 193 (194)
T PF00753_consen 131 LIIYLPGGKVLFTGDLLFSNEHPNPDP-------D----LPLRGADV--RYGSNWEESIEALRRLEALDPEVIIPG 193 (194)
T ss_dssp EEEEETTTTEEEEETTSCTTTSSSSST-------S----HTTTTHTT--SHTTHHHHHHHHHHHHHTSTTSEEEES
T ss_pred eEEEeCCCcEEEeeeEeccCCcccccc-------c----cccccccc--cCcHHHHHHHHHHHHHHCCCCCEEEeC
Confidence 456778899999999998654333211 1 11111111 112234556677777777788888873
No 291
>KOG4058|consensus
Probab=23.69 E-value=54 Score=33.99 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=28.5
Q ss_pred CeEEEEcCccchHhHHHHhcCC-CeEEEEeCCccccchH
Q psy9966 691 SHIIDLGGGQGYLSTILALQHG-KKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~~~~-~~V~~IE~~~~~~~gA 728 (1101)
...||+|||-|-.--+-| +.| ++-+|+|.|+-++.-+
T Consensus 74 GklvDlGSGDGRiVlaaa-r~g~~~a~GvELNpwLVays 111 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAA-RCGLRPAVGVELNPWLVAYS 111 (199)
T ss_pred CcEEeccCCCceeehhhh-hhCCCcCCceeccHHHHHHH
Confidence 378999999998744444 566 7999999999877443
No 292
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=23.30 E-value=65 Score=32.36 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=18.5
Q ss_pred EEcCccchHhHHHH-----hcCCCeEEEEeCCccccchH
Q psy9966 695 DLGGGQGYLSTILA-----LQHGKKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 695 D~GsGkGyLsr~La-----~~~~~~V~~IE~~~~~~~gA 728 (1101)
|+||+-|..+..+. ...+.+|+++|.++.+.+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l 39 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKL 39 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHH
Confidence 89999994444443 23578999999999865443
No 293
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=23.26 E-value=1.3e+02 Score=35.50 Aligned_cols=47 Identities=26% Similarity=0.261 Sum_probs=35.4
Q ss_pred HHHHHHHhccCCCCeEEEEcCccchHhHHHHhcC---CCeEEEEeCCccc
Q psy9966 678 SQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQH---GKKTLSLDYNQVN 724 (1101)
Q Consensus 678 s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~---~~~V~~IE~~~~~ 724 (1101)
|.+++.+.+......|+|.||+=|-=+..||... |..|+++|.++..
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~R 194 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKR 194 (355)
T ss_pred HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHH
Confidence 3455656666666899999999998877777542 4678999999653
No 294
>PRK13699 putative methylase; Provisional
Probab=23.24 E-value=1.6e+02 Score=32.55 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=41.2
Q ss_pred HHHHHHHHHhccCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHHHHhhh
Q psy9966 676 VMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRSKK 734 (1101)
Q Consensus 676 ~~s~~v~~l~~~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~~r~~k 734 (1101)
.+..+|...+...+ .|+|-=+|.|--+.+- .+.|.+.+|+|.++..++.|.+|-.+
T Consensus 152 l~~~~i~~~s~~g~--~vlDpf~Gsgtt~~aa-~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 152 SLQPLIESFTHPNA--IVLDPFAGSGSTCVAA-LQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHhCCCCC--EEEeCCCCCCHHHHHH-HHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 34456665555444 7999888888654443 36899999999999999888877654
No 295
>PRK14530 adenylate kinase; Provisional
Probab=23.15 E-value=48 Score=35.74 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=19.9
Q ss_pred EcCccchHhHHHHhcCCCeEEEE
Q psy9966 696 LGGGQGYLSTILALQHGKKTLSL 718 (1101)
Q Consensus 696 ~GsGkGyLsr~La~~~~~~V~~I 718 (1101)
-||||+-+++.||..+|+..+..
T Consensus 12 pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 12 PGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CCCCHHHHHHHHHHHhCCeEEec
Confidence 48999999999999999876654
No 296
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=23.10 E-value=1e+02 Score=35.59 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=26.7
Q ss_pred CeEEEEcCccchHhHHHHh-cCCCeEEEEeCCccccchHH
Q psy9966 691 SHIIDLGGGQGYLSTILAL-QHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 691 ~~vVD~GsGkGyLsr~La~-~~~~~V~~IE~~~~~~~gA~ 729 (1101)
..++|||.|-.-.=-.|+. .||.+++|.|.++...+.|+
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~ 143 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESAR 143 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHH
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHH
Confidence 4689999998855445554 38999999999999887775
No 297
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=22.84 E-value=95 Score=31.79 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=21.6
Q ss_pred EEEEecccC--CCHHHHHHHHHHhCCCEEEEec
Q psy9966 222 IEYMSFSAH--ADAKGIMQLIQYCEPKNVLLVH 252 (1101)
Q Consensus 222 V~~i~fSaH--AD~~~l~~~I~~l~Pk~VILVH 252 (1101)
|--++++|. .+.++..++++.++|+.||++|
T Consensus 131 vl~~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 131 VLFLPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp EEEEE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred EEEecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 333455553 6899999999999999999999
No 298
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=22.04 E-value=1.5e+02 Score=31.96 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHhc-cCCCCeEEEEcCccchHhHHHHhcCCCeEEEEeCCcc
Q psy9966 680 VVAAVTN-SCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQV 723 (1101)
Q Consensus 680 ~v~~l~~-~~~~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~ 723 (1101)
+-+.+.. .-...+++|+-||.|-||-.-.+....+|+.||.|..
T Consensus 33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~ 77 (187)
T COG0742 33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRK 77 (187)
T ss_pred HHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHH
Confidence 4444554 2456699999999999998888788899999999965
No 299
>PRK08118 topology modulation protein; Reviewed
Probab=21.90 E-value=47 Score=34.61 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.8
Q ss_pred EcCccchHhHHHHhcCCCeEEEEeC
Q psy9966 696 LGGGQGYLSTILALQHGKKTLSLDY 720 (1101)
Q Consensus 696 ~GsGkGyLsr~La~~~~~~V~~IE~ 720 (1101)
-||||..|++.|+..+|++++.+|.
T Consensus 10 ~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 10 GGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred CCCCHHHHHHHHHHHhCCCceecch
Confidence 5899999999999999999998874
No 300
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=21.73 E-value=1.2e+02 Score=36.19 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=31.7
Q ss_pred eEEEEcCccchHhHHHHhcC-C-CeEEEEeCCccccchH
Q psy9966 692 HIIDLGGGQGYLSTILALQH-G-KKTLSLDYNQVNTHGA 728 (1101)
Q Consensus 692 ~vVD~GsGkGyLsr~La~~~-~-~~V~~IE~~~~~~~gA 728 (1101)
.|+|..||.|-+|-..+.+- | .+|+++|.|+..++-+
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i 85 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESI 85 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHH
Confidence 79999999999999999773 4 6999999999876544
No 301
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=21.45 E-value=67 Score=37.70 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=27.4
Q ss_pred EEEEcCccchHhHHHHhcCCCeEEEEeCCcccc
Q psy9966 693 IIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725 (1101)
Q Consensus 693 vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~ 725 (1101)
|+-+| |.||++-.+|...|.+|+++|.++.-.
T Consensus 172 I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~ 203 (339)
T COG1064 172 VVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKL 203 (339)
T ss_pred EECCc-HHHHHHHHHHHHcCCeEEEEeCChHHH
Confidence 45678 899999999988999999999987643
No 302
>KOG1501|consensus
Probab=20.72 E-value=86 Score=37.76 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=30.9
Q ss_pred CCeEEEEcCccchHhHHHHhcCCCeEEEEeCCccccchHH
Q psy9966 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAA 729 (1101)
Q Consensus 690 ~~~vVD~GsGkGyLsr~La~~~~~~V~~IE~~~~~~~gA~ 729 (1101)
--+|+|||.|.|-||-+-+-.-+-.|+++|.=.-....|.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ar 106 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLAR 106 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHH
Confidence 4588999999999987777666778999997655555554
No 303
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=20.62 E-value=1.9e+02 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=28.8
Q ss_pred CCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhCCCeEEEe
Q psy9966 32 KCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIP 76 (1101)
Q Consensus 32 ~~~~DvLI~ESTYg~~~~~~r~~rE~~f~~~I~etl~~GG~VLIP 76 (1101)
..++|++++...+... ...-..+++.+.+.++.||.+++-
T Consensus 64 ~~~~d~i~~~~~~~~~-----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHL-----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeeh-----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4578999998876542 234466778888888899988764
No 304
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.06 E-value=7.2e+02 Score=26.65 Aligned_cols=177 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEeecchhHHHHHHHHHHHHHHhcCCCcc-EEEeChHHHHHHHHHHHhHhhhhHHHHHhhhh
Q psy9966 56 ERDFLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAP-IYFAVGLTEKATNYYKMFITWTNQKIRKTFVQ 134 (1101)
Q Consensus 56 E~~f~~~I~etl~~GG~VLIPvFAlGRaQELl~iL~~~w~~~~~~vP-Iy~~s~la~k~~~vy~~~~~~ln~~i~~~f~~ 134 (1101)
+.+..+.+.+.+..|-... -+...=.+..+..+-+.|++....+| +++++...++.+.+...+..
T Consensus 11 ~~~~~~~v~~~l~~g~~~~--~i~~~~l~p~m~~iG~~w~~gei~va~~~~a~~~~~~~l~~l~~~~~------------ 76 (197)
T TIGR02370 11 EDDVVEGAQKALDAGIDPI--ELIEKGLMAGMGVVGKLFEDGELFLPHVMMSADAMLAGIKVLTPEME------------ 76 (197)
T ss_pred HHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHhh------------
Q ss_pred cCCCcCCCccccCccccCCCCCeEEEEcCCCCCCchHHHHHHHhCCCCCCeEEEecccCCCcchhhhhcCcceEEecCCe
Q psy9966 135 RNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQ 214 (1101)
Q Consensus 135 ~npF~fk~i~~~~~~~~~~~gp~VViaspGmL~~G~s~~~~~~w~~d~~N~VI~tGy~~~GT~g~~Ll~g~k~i~l~~g~ 214 (1101)
........|.|++++++-=....-..++........--|+.-|- +++...+.+ .
T Consensus 77 -------------~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~---~vp~e~~v~----------~ 130 (197)
T TIGR02370 77 -------------KAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR---DVPIDTVVE----------K 130 (197)
T ss_pred -------------ccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC---CCCHHHHHH----------H
Q ss_pred eEEEeeEEEEEecccCCCHHHHHHHHHHh-----CCCEEEEecCChhHHHHHHHHHHHHcCCceeecC
Q psy9966 215 IIDVKMAIEYMSFSAHADAKGIMQLIQYC-----EPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPA 277 (1101)
Q Consensus 215 ~i~v~~~V~~i~fSaHAD~~~l~~~I~~l-----~Pk~VILVHGe~~~m~~Lk~~L~~e~gi~v~~P~ 277 (1101)
....++.+--+|++.......+.++|+.+ +++--|+|=|. .+...+.+++|.+.|.+.
T Consensus 131 ~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~-----~~~~~~~~~~gad~~~~d 193 (197)
T TIGR02370 131 VKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGA-----PVTQDWADKIGADVYGEN 193 (197)
T ss_pred HHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEECh-----hcCHHHHHHhCCcEEeCC
Done!