Your job contains 1 sequence.
>psy9966
MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL
KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF
ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP
VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI
QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK
EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS
SPINKTLELIYDQLLSYLQDKSQEYKIQLTESSLSIDSVLLSVERIDDKNKRVFVTWPNQ
DEEVGKIVLHVLKSMSNTQGQPFEFYPYTDTVFVLSSSRYVQGTYYLHTYLTSVTKHQKE
TMELIKNTIDEMIEFITPNIACVNTHTVHFMVEKLWETTIPKAILSQVNNSPSFDSLLEE
FWKSRQDNHVETNSELVKFFQAADKFRLTSLMNGESIITVDELFSKLQARKCGQVVESAK
VSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGSTITVDELFSKLQARKCGLVVESA
KVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDY
NQVNTHGAAVRSKKLEDSEKESKGPFQSYAGVINKKLWMRTQNRQTSHASVEHHGKNWKR
KSKAPVVSIKDEELVVCKDKCKQITHFVTPDSDISSILSQAYPQDSLHNVCIMGLHTCGD
LSGTALRLFTKSSLQCLVQVGCCYHLLEEEFIRSPFWKDVDQSLYEHGYGFPLSEHLRSR
KFFLGRNVRMSGTQSPERVIDLKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATK
CSNFVEYVHRAVDKLKLDLEVDDEEVTRLFNSHQREYEYLQIYYFLKTALAPVIEALIVL
DRVLYLREQQKPQIISNLFLSLLTQVDDEEVTRLFDSHQREYEYLQIYYFLKTALAPVIE
ALIVLDRVLYLREQQKPQSQF
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9966
(1101 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0039691 - symbol:IntS11 "Integrator 11" species:72... 1628 2.2e-167 1
UNIPROTKB|F1NV30 - symbol:CPSF3L "Integrator complex subu... 1451 1.3e-148 1
UNIPROTKB|Q5ZIH0 - symbol:CPSF3L "Integrator complex subu... 1451 1.3e-148 1
MGI|MGI:1919207 - symbol:Cpsf3l "cleavage and polyadenyla... 1425 7.3e-146 1
UNIPROTKB|E2QY53 - symbol:CPSF3L "Uncharacterized protein... 1424 9.3e-146 1
RGD|1306841 - symbol:Cpsf3l "cleavage and polyadenylation... 1422 1.5e-145 1
UNIPROTKB|F1RJE8 - symbol:CPSF3L "Uncharacterized protein... 1415 8.4e-145 1
UNIPROTKB|E1B7Q9 - symbol:CPSF3L "Integrator complex subu... 1414 1.1e-144 1
UNIPROTKB|Q2YDM2 - symbol:CPSF3L "Integrator complex subu... 1414 1.1e-144 1
UNIPROTKB|G3V1S5 - symbol:CPSF3L "Integrator complex subu... 1414 1.1e-144 1
UNIPROTKB|Q5TA45 - symbol:CPSF3L "Integrator complex subu... 1414 1.1e-144 1
ZFIN|ZDB-GENE-050522-13 - symbol:cpsf3l "cleavage and pol... 1348 1.1e-137 1
DICTYBASE|DDB_G0278189 - symbol:ints11 "integrator comple... 1063 3.1e-114 3
WB|WBGene00008642 - symbol:F10B5.8 species:6239 "Caenorha... 1047 8.3e-106 1
TAIR|locus:2065368 - symbol:CPSF73-II "AT2G01730" species... 883 2.0e-88 1
GENEDB_PFALCIPARUM|PFC0825c - symbol:PFC0825c "cleavage a... 758 3.6e-75 1
UNIPROTKB|O77371 - symbol:PFC0825c "Cleavage and polyaden... 758 3.6e-75 1
UNIPROTKB|C9J979 - symbol:CPSF3L "Integrator complex subu... 599 1.9e-57 1
UNIPROTKB|P79101 - symbol:CPSF3 "Cleavage and polyadenyla... 568 1.9e-55 2
UNIPROTKB|E2R7R2 - symbol:CPSF3 "Uncharacterized protein"... 568 1.9e-55 2
RGD|1305767 - symbol:Cpsf3 "cleavage and polyadenylation ... 565 2.5e-55 2
MGI|MGI:1859328 - symbol:Cpsf3 "cleavage and polyadenylat... 563 4.2e-55 2
UNIPROTKB|G3V6W7 - symbol:Cpsf3 "Protein Cpsf3" species:1... 563 4.2e-55 2
UNIPROTKB|I3LKR1 - symbol:CPSF3 "Uncharacterized protein"... 559 1.1e-54 2
ZFIN|ZDB-GENE-030131-3275 - symbol:cpsf3 "cleavage and po... 571 2.0e-54 1
UNIPROTKB|G5E9W3 - symbol:CPSF3 "Cleavage and polyadenyla... 559 2.4e-54 2
UNIPROTKB|Q9UKF6 - symbol:CPSF3 "Cleavage and polyadenyla... 559 2.4e-54 2
UNIPROTKB|F1NKW5 - symbol:CPSF3 "Uncharacterized protein"... 566 6.8e-54 1
FB|FBgn0261065 - symbol:Cpsf73 "Cleavage and polyadenylat... 563 1.4e-53 1
TAIR|locus:2206076 - symbol:CPSF73-I "cleavage and polyad... 546 4.8e-53 2
DICTYBASE|DDB_G0274799 - symbol:cpsf3 "cleavage and polya... 562 2.2e-52 1
WB|WBGene00013460 - symbol:cpsf-3 species:6239 "Caenorhab... 532 3.2e-50 1
POMBASE|SPAC17G6.16c - symbol:ysh1 "mRNA cleavage and pol... 503 3.1e-45 1
MGI|MGI:3041259 - symbol:Mettl25 "methyltransferase like ... 339 6.7e-43 2
CGD|CAL0005344 - symbol:orf19.5486 species:5476 "Candida ... 457 1.1e-41 2
UNIPROTKB|Q59P50 - symbol:YSH1 "Endoribonuclease YSH1" sp... 457 1.1e-41 2
SGD|S000004267 - symbol:YSH1 "Putative endoribonuclease" ... 462 5.5e-41 2
UNIPROTKB|Q8N6Q8 - symbol:METTL25 "Methyltransferase-like... 335 1.6e-40 2
GENEDB_PFALCIPARUM|PF14_0364 - symbol:PF14_0364 "cleavage... 421 3.8e-35 2
UNIPROTKB|Q8IL83 - symbol:PF14_0364 "Cleavage and polyade... 421 3.8e-35 2
UNIPROTKB|E9PNS4 - symbol:CPSF3L "Integrator complex subu... 362 5.5e-32 1
ASPGD|ASPL0000060573 - symbol:AN0990 species:162425 "Emer... 251 9.6e-24 2
TAIR|locus:2172843 - symbol:CPSF100 "cleavage and polyade... 282 1.6e-23 2
FB|FBgn0027873 - symbol:Cpsf100 "Cleavage and polyadenyla... 251 1.4e-21 2
TAIR|locus:2017928 - symbol:AT1G16650 "AT1G16650" species... 159 4.0e-20 3
TIGR_CMR|CHY_2049 - symbol:CHY_2049 "metallo-beta-lactama... 241 8.3e-17 1
ZFIN|ZDB-GENE-040718-79 - symbol:cpsf2 "cleavage and poly... 219 1.1e-16 2
POMBASE|SPBC1709.15c - symbol:cft2 "cleavage factor two C... 221 1.8e-16 2
UNIPROTKB|Q10568 - symbol:CPSF2 "Cleavage and polyadenyla... 215 2.9e-16 2
UNIPROTKB|E2R496 - symbol:CPSF2 "Uncharacterized protein"... 214 3.7e-16 2
UNIPROTKB|Q9P2I0 - symbol:CPSF2 "Cleavage and polyadenyla... 214 3.7e-16 2
MGI|MGI:1861601 - symbol:Cpsf2 "cleavage and polyadenylat... 214 5.9e-16 2
RGD|1309687 - symbol:Cpsf2 "cleavage and polyadenylation ... 214 5.9e-16 2
UNIPROTKB|E9PI75 - symbol:CPSF3L "Integrator complex subu... 209 1.2e-15 1
UNIPROTKB|F1NMN0 - symbol:CPSF2 "Uncharacterized protein"... 214 1.5e-15 2
UNIPROTKB|E9PIG1 - symbol:CPSF3L "Integrator complex subu... 204 4.2e-15 1
UNIPROTKB|Q9W799 - symbol:cpsf2 "Cleavage and polyadenyla... 212 6.4e-15 3
UNIPROTKB|Q9KV92 - symbol:VC_0264 "Putative uncharacteriz... 216 3.6e-14 1
TIGR_CMR|VC_0264 - symbol:VC_0264 "conserved hypothetical... 216 3.6e-14 1
UNIPROTKB|F1SD85 - symbol:CPSF2 "Uncharacterized protein"... 208 1.6e-13 1
DICTYBASE|DDB_G0277177 - symbol:DDB_G0277177 "UPF0431 pro... 166 2.4e-12 2
TIGR_CMR|CPS_2623 - symbol:CPS_2623 "metallo-beta-lactama... 194 9.2e-12 1
WB|WBGene00009123 - symbol:F25H2.12b species:6239 "Caenor... 171 1.0e-11 2
DICTYBASE|DDB_G0270392 - symbol:cpsf2 "cleavage and polya... 166 1.7e-10 2
WB|WBGene00017313 - symbol:cpsf-2 species:6239 "Caenorhab... 167 2.6e-10 2
UNIPROTKB|O17403 - symbol:cpsf-2 "Probable cleavage and p... 167 2.6e-10 2
ZFIN|ZDB-GENE-050522-515 - symbol:rrnad1 "ribosomal RNA a... 160 4.7e-10 2
UNIPROTKB|E2QS81 - symbol:C1orf66 "Uncharacterized protei... 101 8.4e-10 3
UNIPROTKB|Q74C32 - symbol:GSU1843 "RNA exonuclease, beta-... 107 3.0e-07 2
TIGR_CMR|GSU_1843 - symbol:GSU_1843 "metallo-beta-lactama... 107 3.0e-07 2
TIGR_CMR|DET_1061 - symbol:DET_1061 "metallo-beta-lactama... 150 6.4e-07 1
UNIPROTKB|F1MN22 - symbol:RRNAD1 "Protein RRNAD1" species... 115 8.9e-07 2
UNIPROTKB|F1RHJ0 - symbol:RRNAD1 "Uncharacterized protein... 116 1.4e-06 2
UNIPROTKB|Q8EJC6 - symbol:SO_0541 "RNA-metabolizing metal... 147 1.4e-06 1
TIGR_CMR|SO_0541 - symbol:SO_0541 "metallo-beta-lactamase... 147 1.4e-06 1
UNIPROTKB|Q5E9V4 - symbol:RRNAD1 "Protein RRNAD1" species... 112 1.9e-06 2
UNIPROTKB|Q96FB5 - symbol:RRNAD1 "Protein RRNAD1" species... 109 1.9e-06 2
RGD|1311265 - symbol:Rrnad1 "ribosomal RNA adenine dimeth... 108 2.5e-06 2
MGI|MGI:2387197 - symbol:Rrnad1 "ribosomal RNA adenine di... 104 2.6e-06 2
ASPGD|ASPL0000014896 - symbol:AN8165 species:162425 "Emer... 105 6.0e-06 3
UNIPROTKB|G4N6C6 - symbol:MGG_06570 "Uncharacterized prot... 115 0.00015 4
>FB|FBgn0039691 [details] [associations]
symbol:IntS11 "Integrator 11" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0034472 "snRNA
3'-end processing" evidence=IDA] [GO:0016180 "snRNA processing"
evidence=ISS] [GO:0032039 "integrator complex" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0006378 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
GO:GO:0034472 EMBL:AY061097 RefSeq:NP_651721.1 UniGene:Dm.3722
SMR:Q9VAH9 STRING:Q9VAH9 EnsemblMetazoa:FBtr0085476 GeneID:43506
KEGG:dme:Dmel_CG1972 UCSC:CG1972-RA CTD:43506 FlyBase:FBgn0039691
InParanoid:Q9VAH9 OrthoDB:EOG47D7X3 GenomeRNAi:43506 NextBio:834295
Uniprot:Q9VAH9
Length = 597
Score = 1628 (578.1 bits), Expect = 2.2e-167, P = 2.2e-167
Identities = 299/438 (68%), Positives = 365/438 (83%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +KVG+QS+VYTGDYNMTPDRHLGAAWIDKCRPDLLI+ESTYATTIRDSKRCRERDFL
Sbjct: 163 MFWIKVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHECV +GGKVLIPVFALGRAQELCILLETYWERMNL+ PIYFA+GLTEKA YYKMF
Sbjct: 223 KKVHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
ITWTNQKIRKTFV RNMFDFKHI+PFDK++IDNPG MVVFATPGMLH+GLSL IFKKWAP
Sbjct: 283 ITWTNQKIRKTFVHRNMFDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAP 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
ENNM+IMPG+CVQGT+G+K+L G KK+EFEN+Q+++VKMA+EYMSFSAHADAKGIMQLI
Sbjct: 343 NENNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLI 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
Q CEPKNV+LVHGEA KM FL+ KIK EFNL+ +MPANGE+C + T +KI +D SV+LLK
Sbjct: 403 QNCEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGETCVISTPVKIPVDASVSLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
EA YN++PP+P + R IHGVLV+KD+ I L ++ +A KE+GI+RH++RFTS V++ DS
Sbjct: 463 AEARSYNAQPPDPKRRRLIHGVLVMKDNRIMLQNLTDALKEIGINRHVMRFTSKVKMDDS 522
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKN---KRVFVTW 417
P+ +T E +L + L++K + + + E D+K+ K + ++W
Sbjct: 523 GPVIRTSE----RLKTLLEEKLAGWTVTMQENGSIAIESVEVKVEEDEKDPKQKNILISW 578
Query: 418 PNQDEEVGKIVLHVLKSM 435
NQDE++G +L+VL++M
Sbjct: 579 TNQDEDIGAYILNVLQNM 596
>UNIPROTKB|F1NV30 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
IPI:IPI00571913 EMBL:AADN02040858 Ensembl:ENSGALT00000002586
Uniprot:F1NV30
Length = 600
Score = 1451 (515.8 bits), Expect = 1.3e-148, P = 1.3e-148
Identities = 274/433 (63%), Positives = 339/433 (78%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG +S+VYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGCESVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+APIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
ITWTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 ITWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +QI++VKM +EYMSFSAHADAKGIMQLI
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLI 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
+ EP+NVLLVHGEA KM FLK+KI+QEF+++C+MPANGE+ + T+ I +D+S+ LLK
Sbjct: 403 RQAEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTSIFTNPSIPVDISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E P+ K + +HG L++KD+S L+ ++A KE+G++ H +RFT V I D
Sbjct: 463 RETAI--GLLPDAKKPKLMHGTLIMKDNSFRLVSPEQALKELGLAEHQLRFTCRVHIQDP 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQ 420
++T+ +Y+ L L+D S ++ + D K + V+W Q
Sbjct: 521 RKEHETVLRVYNHLKGVLKDYSVQH-LPDGSITVESILIQATAHSEDQGTKVLLVSWTYQ 579
Query: 421 DEEVGKIVLHVLK 433
DEE+G + +LK
Sbjct: 580 DEELGSYLTSLLK 592
>UNIPROTKB|Q5ZIH0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB EMBL:AJ720814 IPI:IPI00571913
RefSeq:NP_001012854.1 UniGene:Gga.13403 ProteinModelPortal:Q5ZIH0
STRING:Q5ZIH0 GeneID:419418 KEGG:gga:419418 CTD:54973
InParanoid:Q5ZIH0 NextBio:20822477 Uniprot:Q5ZIH0
Length = 600
Score = 1451 (515.8 bits), Expect = 1.3e-148, P = 1.3e-148
Identities = 274/433 (63%), Positives = 339/433 (78%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG +S+VYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGCESVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+APIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
ITWTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 ITWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +QI++VKM +EYMSFSAHADAKGIMQLI
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLI 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
+ EP+NVLLVHGEA KM FLK+KI+QEF+++C+MPANGE+ + T+ I +D+S+ LLK
Sbjct: 403 RQAEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTTIFTNPSIPVDISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E P+ K + +HG L++KD+S L+ ++A KE+G++ H +RFT V I D
Sbjct: 463 RETAI--GLLPDAKKPKLMHGTLIMKDNSFRLVSPEQALKELGLAEHQLRFTCRVHIQDP 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQ 420
++T+ +Y+ L L+D S ++ + D K + V+W Q
Sbjct: 521 RKEHETVLRVYNHLKGVLKDYSVQH-LPDGSITVESILIQATAHSEDQGTKVLLVSWTYQ 579
Query: 421 DEEVGKIVLHVLK 433
DEE+G + +LK
Sbjct: 580 DEELGSYLTSLLK 592
>MGI|MGI:1919207 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 MGI:MGI:1919207 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB CTD:54973 EMBL:AK010425
EMBL:AK090206 EMBL:AK150436 EMBL:AK152740 EMBL:AK167607
EMBL:AK172533 EMBL:BC008240 EMBL:BC011155 IPI:IPI00467084
RefSeq:NP_082296.1 UniGene:Mm.259270 UniGene:Mm.475640
ProteinModelPortal:Q9CWS4 SMR:Q9CWS4 STRING:Q9CWS4
PhosphoSite:Q9CWS4 PaxDb:Q9CWS4 PRIDE:Q9CWS4
Ensembl:ENSMUST00000030901 GeneID:71957 KEGG:mmu:71957
InParanoid:Q9CWS4 NextBio:335052 Bgee:Q9CWS4 Genevestigator:Q9CWS4
GermOnline:ENSMUSG00000029034 Uniprot:Q9CWS4
Length = 600
Score = 1425 (506.7 bits), Expect = 7.3e-146, P = 7.3e-146
Identities = 268/434 (61%), Positives = 334/434 (76%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+ PIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
ITWTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 ITWTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP++VLLVHGEA KM FL++KI+QEF + C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E V+ P K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 463 REMVQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLQDT 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQ 420
+T +Y L S L+D ++ + D K + V+W Q
Sbjct: 521 RKEQETALRVYSHLKSTLKDHCVQH-LPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQ 579
Query: 421 DEEVGKIVLHVLKS 434
DEE+G + +LK+
Sbjct: 580 DEELGSFLTTLLKN 593
>UNIPROTKB|E2QY53 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:AAEX03003844 RefSeq:XP_003639102.1 Ensembl:ENSCAFT00000030626
GeneID:100855777 KEGG:cfa:100855777 Uniprot:E2QY53
Length = 600
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 268/433 (61%), Positives = 333/433 (76%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+APIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHEAVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
ITWTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 ITWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP++VLLVHGEA KM FLK+KI+QEF ++C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPESVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E + P+ K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D
Sbjct: 463 REMAQ--GLLPDVKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDP 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQ 420
+ +Y L S L+D ++ + D K + V+W Q
Sbjct: 521 RKEQEMAVRVYSHLKSVLKDHCVQH-LPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQ 579
Query: 421 DEEVGKIVLHVLK 433
DEE+G + +LK
Sbjct: 580 DEELGSYLTSLLK 592
>RGD|1306841 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 RGD:1306841 GO:GO:0005634 GO:GO:0005737
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000231294 KO:K13148
OMA:MAVEYMS GeneTree:ENSGT00700000104485 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:BC105303 IPI:IPI00365477
RefSeq:NP_001029064.1 UniGene:Rn.98615 ProteinModelPortal:Q3MHC2
STRING:Q3MHC2 Ensembl:ENSRNOT00000026725 GeneID:298688
KEGG:rno:298688 InParanoid:Q3MHC2 NextBio:644186
Genevestigator:Q3MHC2 GermOnline:ENSRNOG00000019712 Uniprot:Q3MHC2
Length = 600
Score = 1422 (505.6 bits), Expect = 1.5e-145, P = 1.5e-145
Identities = 267/434 (61%), Positives = 334/434 (76%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+ PIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
ITWTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 ITWTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP++VLLVHGEA KM FL++KI+QEF + C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E V+ P K R +HG L++KD++ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 463 REMVQ--GLLPEAKKPRLLHGTLIMKDNNFRLVSSEQALKELGLAEHQLRFTCRVHLQDT 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQ 420
+T +Y L S L+D ++ + D K + V+W Q
Sbjct: 521 RKEQETALRVYSHLKSTLKDHCVQH-LPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQ 579
Query: 421 DEEVGKIVLHVLKS 434
DEE+G + +LK+
Sbjct: 580 DEELGSFLTALLKN 593
>UNIPROTKB|F1RJE8 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:FP102596 RefSeq:XP_003127541.3 Ensembl:ENSSSCT00000003708
GeneID:100523908 KEGG:ssc:100523908 Uniprot:F1RJE8
Length = 599
Score = 1415 (503.2 bits), Expect = 8.4e-145, P = 8.4e-145
Identities = 267/433 (61%), Positives = 331/433 (76%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERM+L+APIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I WTNQKIRKTFVQRNMF+FKHI+ FD++F D+PGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 IPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLELEGRQVLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP+NVLLVHGEA KM FLK+KI+QEF L C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPENVLLVHGEAKKMEFLKQKIEQEFRLSCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E + P+ K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D
Sbjct: 463 REMAQ--GLLPDAKKARLLHGTLIMKDSTFRLVSSEQALKELGLAEHQLRFTCRVHLHDP 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQ 420
+ +Y L S L+D ++ + D K + V+W Q
Sbjct: 521 RKEQEMAMRVYSHLKSLLKDHCVQH-LPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQ 579
Query: 421 DEEVGKIVLHVLK 433
DEE+G + +LK
Sbjct: 580 DEELGSYLTSLLK 592
>UNIPROTKB|E1B7Q9 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:DAAA02043243 IPI:IPI00971575 Ensembl:ENSBTAT00000010020
Uniprot:E1B7Q9
Length = 598
Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
Identities = 266/433 (61%), Positives = 332/433 (76%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP LLITESTYATTIRDSKRCRERDFL
Sbjct: 162 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFL 221
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERM+L+APIYF+ GLTEKA +YYK+F
Sbjct: 222 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLF 281
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I WTNQKIRKTFVQRNMF+FKHI+ FD++F D+PGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 282 IPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAG 341
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 342 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLV 401
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP+NVLLVHGEA KM FLK+KI+QEF ++C+MPANGE+ + T I + +S+ LLK
Sbjct: 402 GQAEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLK 461
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E + P+ K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 462 REMAQ--GLLPDAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDT 519
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQ 420
+ +Y L S L+D ++ + D K + V+W Q
Sbjct: 520 RKEQEMAMRVYSHLKSVLKDHCVQH-LPDGSVTVESILVQAAAHSEDPGTKVLLVSWTYQ 578
Query: 421 DEEVGKIVLHVLK 433
DEE+G + +LK
Sbjct: 579 DEELGSYLTSLLK 591
>UNIPROTKB|Q2YDM2 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 EMBL:BC110155 IPI:IPI00725178
UniGene:Bt.4894 ProteinModelPortal:Q2YDM2 STRING:Q2YDM2
PRIDE:Q2YDM2 HOVERGEN:HBG080215 InParanoid:Q2YDM2 OrthoDB:EOG4GXFMB
Uniprot:Q2YDM2
Length = 599
Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
Identities = 266/433 (61%), Positives = 332/433 (76%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERM+L+APIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I WTNQKIRKTFVQRNMF+FKHI+ FD++F D+PGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 IPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP+NVLLVHGEA KM FLK+KI+QEF ++C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E + P+ K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 463 REMAQ--GLLPDAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDT 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQ 420
+ +Y L S L+D ++ + D K + V+W Q
Sbjct: 521 RKEQEMAMRVYSHLKSVLKDHCVQH-LPDGSVTVESILVQAAAHSEDPGTKVLLVSWTYQ 579
Query: 421 DEEVGKIVLHVLK 433
DEE+G + +LK
Sbjct: 580 DEELGSYLTSLLK 592
>UNIPROTKB|G3V1S5 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:AL139287 EMBL:CH471183 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 OMA:MAVEYMS
CTD:54973 UniGene:Hs.6449 GeneID:54973 KEGG:hsa:54973
HGNC:HGNC:26052 ChiTaRS:CPSF3L GenomeRNAi:54973
RefSeq:NP_001243385.1 ProteinModelPortal:G3V1S5 SMR:G3V1S5
Ensembl:ENST00000540437 ArrayExpress:G3V1S5 Bgee:G3V1S5
Uniprot:G3V1S5
Length = 606
Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
Identities = 266/433 (61%), Positives = 331/433 (76%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 169 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 228
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+ PIYF+ GLTEKA +YYK+F
Sbjct: 229 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLF 288
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I WTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 289 IPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 348
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 349 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLV 408
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP++VLLVHGEA KM FLK+KI+QE ++C+MPANGE+ + T I + +S+ LLK
Sbjct: 409 GQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLK 468
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E + P K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 469 REMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDT 526
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQ 420
+T +Y L S L+D ++ + D K + V+W Q
Sbjct: 527 RKEQETALRVYSHLKSVLKDHCVQH-LPDGSVTVESVLLQAAAPSEDPGTKVLLVSWTYQ 585
Query: 421 DEEVGKIVLHVLK 433
DEE+G + +LK
Sbjct: 586 DEELGSFLTSLLK 598
>UNIPROTKB|Q5TA45 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
EMBL:AL139287 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:AL136813 EMBL:AK000549
EMBL:AK021939 EMBL:AK023356 EMBL:AK297350 EMBL:CR533557
EMBL:BC000675 EMBL:BC007978 EMBL:BC013904 EMBL:BK005728
EMBL:BK005673 IPI:IPI00063404 IPI:IPI00306882 IPI:IPI00514973
RefSeq:NP_001243392.1 RefSeq:NP_060341.2 UniGene:Hs.6449
ProteinModelPortal:Q5TA45 SMR:Q5TA45 IntAct:Q5TA45
MINT:MINT-1482228 STRING:Q5TA45 PhosphoSite:Q5TA45 DMDM:118572557
PaxDb:Q5TA45 PRIDE:Q5TA45 DNASU:54973 Ensembl:ENST00000419704
Ensembl:ENST00000435064 Ensembl:ENST00000450926
Ensembl:ENST00000545578 GeneID:54973 KEGG:hsa:54973 UCSC:uc001aee.1
UCSC:uc001aeh.1 UCSC:uc009vjz.1 GeneCards:GC01M001236
HGNC:HGNC:26052 HPA:HPA028379 HPA:HPA029025 MIM:611354
neXtProt:NX_Q5TA45 PharmGKB:PA142672080 InParanoid:Q5TA45
PhylomeDB:Q5TA45 ChiTaRS:CPSF3L GenomeRNAi:54973 NextBio:58222
ArrayExpress:Q5TA45 Bgee:Q5TA45 Genevestigator:Q5TA45
GermOnline:ENSG00000127054 Uniprot:Q5TA45
Length = 600
Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
Identities = 266/433 (61%), Positives = 331/433 (76%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
KKVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+ PIYF+ GLTEKA +YYK+F
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLF 282
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I WTNQKIRKTFVQRNMF+FKHI+ FD++F DNPGPMVVFATPGMLH+G SL IF+KWA
Sbjct: 283 IPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAG 342
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
E NM+IMPG+CVQGT+GHK+LSG +KLE E +Q+++VKM +EYMSFSAHADAKGIMQL+
Sbjct: 343 NEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLV 402
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLK 300
EP++VLLVHGEA KM FLK+KI+QE ++C+MPANGE+ + T I + +S+ LLK
Sbjct: 403 GQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLK 462
Query: 301 EEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDS 360
E + P K R +HG L++KDS+ L+ ++A KE+G++ H +RFT V + D+
Sbjct: 463 REMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDT 520
Query: 361 SPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQ 420
+T +Y L S L+D ++ + D K + V+W Q
Sbjct: 521 RKEQETALRVYSHLKSVLKDHCVQH-LPDGSVTVESVLLQAAAPSEDPGTKVLLVSWTYQ 579
Query: 421 DEEVGKIVLHVLK 433
DEE+G + +LK
Sbjct: 580 DEELGSFLTSLLK 592
>ZFIN|ZDB-GENE-050522-13 [details] [associations]
symbol:cpsf3l "cleavage and polyadenylation specific
factor 3-like" species:7955 "Danio rerio" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
ZFIN:ZDB-GENE-050522-13 GO:GO:0016787 GO:GO:0043484
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS GeneTree:ENSGT00700000104485 EMBL:CABZ01054885
EMBL:CR846089 IPI:IPI00865509 Ensembl:ENSDART00000102902
Uniprot:E7EXW1
Length = 601
Score = 1348 (479.6 bits), Expect = 1.1e-137, P = 1.1e-137
Identities = 261/432 (60%), Positives = 324/432 (75%)
Query: 2 FQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 61
F+V V S+ YT MTP L AAWIDKCRPD+LI+ESTYATTIRDSKRCRERDFLK
Sbjct: 168 FRV-VYTVSVSYTYSNLMTPASDLRAAWIDKCRPDILISESTYATTIRDSKRCRERDFLK 226
Query: 62 KVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMFI 121
KVHE V+RGGKVLIPVFALGRAQELCILLET+WERMNL+APIYF+ GLTEKA +YYK+FI
Sbjct: 227 KVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFI 286
Query: 122 TWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAPV 181
TWTNQKIRKTFVQRNMF+FKHI+ FD+S+ DNPGPMVVFATPGMLH+G SL IFKKWA
Sbjct: 287 TWTNQKIRKTFVQRNMFEFKHIKAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGN 346
Query: 182 ENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQ 241
E NM+IMPG+CVQGT+GHK+L+G KKLE E + +DVK+ +EYMSFSAHADAKGIMQLI+
Sbjct: 347 EKNMVIMPGYCVQGTVGHKILNGQKKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIR 406
Query: 242 YCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLKE 301
EP+N+LLVHGEA KM FLK+KI+QEF++ CFMPANGE+ + T+ + +D+S+NLLK
Sbjct: 407 MAEPRNMLLVHGEAKKMEFLKDKIEQEFSISCFMPANGETTTIVTNPSVPVDISLNLLKR 466
Query: 302 EAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDSS 361
E + P+ K R +HG L++KD+S+ L+ ++A KE+G++ H +RFT VQ+ D
Sbjct: 467 E-MALGGPLPDAKKPRTMHGTLIMKDNSLRLVSPEQALKELGLNEHQLRFTCRVQLHDPH 525
Query: 362 PINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQD 421
TL IY L S L+ S ++ T + K + ++W QD
Sbjct: 526 SDTDTLSRIYTHLKSVLKSYSIQHVPDGTVIVESIVIKVTSSAE-EPNLKVILLSWSYQD 584
Query: 422 EEVGKIVLHVLK 433
EE+G + +LK
Sbjct: 585 EELGSFLSTLLK 596
>DICTYBASE|DDB_G0278189 [details] [associations]
symbol:ints11 "integrator complex subunit 11"
species:44689 "Dictyostelium discoideum" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0278189 Pfam:PF07521 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 RefSeq:XP_642189.1
ProteinModelPortal:Q54YL3 PRIDE:Q54YL3 EnsemblProtists:DDB0234100
GeneID:8621396 KEGG:ddi:DDB_G0278189 OMA:RTIANET
ProtClustDB:CLSZ2729107 Uniprot:Q54YL3
Length = 744
Score = 1063 (379.3 bits), Expect = 3.1e-114, Sum P(3) = 3.1e-114
Identities = 199/324 (61%), Positives = 253/324 (78%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF KVG++S+VYTGDYNMTPDRHLG+AWID+ +PD+LITE+TYATTIRDSKR RERDFL
Sbjct: 162 MFYAKVGDESVVYTGDYNMTPDRHLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFL 221
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNL-QAPIYFAVGLTEKATNYYKM 119
K++HECV++GGKVLIPVFALGR QELCIL+++YWE+MNL PIYF+ GL EKA YYK+
Sbjct: 222 KRIHECVEKGGKVLIPVFALGRVQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKL 281
Query: 120 FITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWA 179
FI WTNQKI++TFV+RNMFDFKHI+PF +D PG MV+FATPGMLH+G SL +FKKWA
Sbjct: 282 FINWTNQKIKQTFVKRNMFDFKHIKPFQSHLVDAPGAMVLFATPGMLHAGASLEVFKKWA 341
Query: 180 PVENNMLIMPGFCVQGTIGHKVLS-GVKK----------LEFENKQIIDVKMAIEYMSFS 228
P E NM I+PG+CV GT+G+K+L+ G + +E + K I+VK I +SFS
Sbjct: 342 PNELNMTIIPGYCVVGTVGNKLLTTGSDQQQQSKPQSQMVEIDKKTTIEVKCKIHNLSFS 401
Query: 229 AHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDM 288
AHADAKGI+QLI+ P+NV+LVHGE KM FL +KI +E ++C+ PANG + + T
Sbjct: 402 AHADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYYPANGVTIIIDTMK 461
Query: 289 KISIDVSVNLLKEEAVKYNSEPPN 312
I ID+S+NLLK + + Y+ + N
Sbjct: 462 SIPIDISLNLLKRQILDYSYQYNN 485
Score = 50 (22.7 bits), Expect = 3.1e-114, Sum P(3) = 3.1e-114
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 410 NKRVFVTWPNQDEEVGKIVLHVLKSMS 436
N + V W ++DE + ++ +LKS++
Sbjct: 718 NMNIVVKWLHKDENLATHIISILKSIN 744
Score = 48 (22.0 bits), Expect = 3.1e-114, Sum P(3) = 3.1e-114
Identities = 17/85 (20%), Positives = 42/85 (49%)
Query: 278 NGESCFVQTDMKISIDVSVNLLKEEAVKYNSEPPNPLK-ERQIHGVLVIKDSSISLMDVD 336
N ++ ++ + IS S NLLK+ + ++ P L +Q + + L+ ++
Sbjct: 548 NQDNNLIEEESFIS---SNNLLKKARLPISTIPIQGLMVSKQDQSSSSSNSNQLKLLGMN 604
Query: 337 EACKEVGISRHIVRFTSNVQISDSS 361
E KE+ I ++++ N+ ++++
Sbjct: 605 EVSKELSIKEIEMQYSLNLNFNNNT 629
>WB|WBGene00008642 [details] [associations]
symbol:F10B5.8 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0009792 EMBL:Z48334 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 PIR:T20694 RefSeq:NP_495706.2
ProteinModelPortal:Q9U3K2 SMR:Q9U3K2 STRING:Q9U3K2 PaxDb:Q9U3K2
EnsemblMetazoa:F10B5.8 GeneID:174310 KEGG:cel:CELE_F10B5.8
UCSC:F10B5.8 CTD:174310 WormBase:F10B5.8 InParanoid:Q9U3K2
NextBio:883468 Uniprot:Q9U3K2
Length = 608
Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
Identities = 209/399 (52%), Positives = 287/399 (71%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWI-DKCRPDLLITESTYATTIRDSKRCRERDF 59
MF++++G+ S++YTGDYNMTPDRHLGAA + RP +LI+ESTYATTIRDSKR RERDF
Sbjct: 167 MFEIRLGDHSVLYTGDYNMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDF 226
Query: 60 LKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKM 119
L+KVHECV +GGKV+IPVFALGRAQELCILLE+YWERM L PIYF+ GL E+A YY++
Sbjct: 227 LRKVHECVMKGGKVIIPVFALGRAQELCILLESYWERMALNVPIYFSQGLAERANQYYRL 286
Query: 120 FITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWA 179
FI+WTN+ I+KTFV+RNMF+FKHI+P +K D PGP V+F+TPGMLH G SL +FKKW
Sbjct: 287 FISWTNENIKKTFVERNMFEFKHIKPMEKGCEDQPGPQVLFSTPGMLHGGQSLKVFKKWC 346
Query: 180 PVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQL 239
NM+IMPG+CV GT+G +V++G KK+E + K + ++++ +EYMSFSAHADAKGIMQL
Sbjct: 347 SDPLNMIIMPGYCVAGTVGARVINGEKKIEIDQK-MHEIRLGVEYMSFSAHADAKGIMQL 405
Query: 240 IQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLL 299
I+ CEP++V+ VHGEASKM FLK K+++E+ + MPANGE+ + K+ D+ V L
Sbjct: 406 IRQCEPQHVMFVHGEASKMEFLKGKVEKEYKVPVHMPANGETVVISAQPKL--DIRVPL- 462
Query: 300 KEEAVKYNSEPPNPLK-ERQIHGVLVI--KDSSISLMDVDEACKEVGISRHIVRFTSNV- 355
E+ + S PNP K E LV ++ +++M E+ +++ ++ + T ++
Sbjct: 463 -EKIDRSLSLDPNPAKSECPFVAELVYDQENERLNIMSTAES-EDLIKDKNCMPITLSLS 520
Query: 356 QISDSSPIN-KTLE---LIYDQLLSYLQDKSQEYKIQLT 390
+I +N K L L+YD L D + + ++T
Sbjct: 521 EIIKGKKVNWKELSNELLLYDPHLQLKDDGIEMFDGEIT 559
>TAIR|locus:2065368 [details] [associations]
symbol:CPSF73-II "AT2G01730" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0010197 "polar nucleus
fusion" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0090305 EMBL:AC006069
GO:GO:0004518 GO:GO:0010197 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 EMBL:AY168923
EMBL:AK221561 IPI:IPI00536069 PIR:D84428 RefSeq:NP_178282.2
UniGene:At.42473 ProteinModelPortal:Q8GUU3 SMR:Q8GUU3 IntAct:Q8GUU3
STRING:Q8GUU3 PaxDb:Q8GUU3 PRIDE:Q8GUU3 EnsemblPlants:AT2G01730.1
GeneID:814702 KEGG:ath:AT2G01730 TAIR:At2g01730
HOGENOM:HOG000231294 InParanoid:Q56XW2 KO:K13148 OMA:MAVEYMS
Genevestigator:Q8GUU3 Uniprot:Q8GUU3
Length = 613
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 178/355 (50%), Positives = 237/355 (66%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
M K+G+ +IVYTGDYNMT DRHLGAA ID+ + DLLI+ESTYATTIR SK RER+FL
Sbjct: 162 MVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFL 221
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
+ VH+CV GGK LIP FALGRAQELC+LL+ YWERMN++ PIYF+ GLT +A YYKM
Sbjct: 222 QAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKML 281
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
I+WT+Q +++ N FDFK+++ FD+S I PGP V+FATPGML +G SL +FK WAP
Sbjct: 282 ISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAP 341
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKK-LEFENKQIIDVKMAIEYMSFSAHADAKGIMQL 239
N++ +PG+ V GT+GHK+++G ++ N +DV+ + ++FS H DAKGIM L
Sbjct: 342 SPLNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDL 401
Query: 240 IQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLL 299
++ PKNV+LVHGE M+ LKEKI E ++ CF+PANGE+ + I + S L
Sbjct: 402 TKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFL 461
Query: 300 KEEA---VKY-NSEPPNPLKERQIHGVLVI-KDSSISLMDVDEACKEVGISRHIV 349
K + K+ NS R GVLVI K ++ DE + + H+V
Sbjct: 462 KSCSNPNFKFSNSTQLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVV 516
>GENEDB_PFALCIPARUM|PFC0825c [details] [associations]
symbol:PFC0825c "cleavage and polyadenylation
specificity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 GO:GO:0003729 GO:GO:0016787
EMBL:AL844502 GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 PIR:T18488
RefSeq:XP_001351256.1 ProteinModelPortal:O77371 PRIDE:O77371
EnsemblProtists:PFC0825c:mRNA GeneID:814500 KEGG:pfa:PFC0825c
EuPathDB:PlasmoDB:PF3D7_0318600 HOGENOM:HOG000283200
ProtClustDB:CLSZ2433497 Uniprot:O77371
Length = 1017
Score = 758 (271.9 bits), Expect = 3.6e-75, P = 3.6e-75
Identities = 137/282 (48%), Positives = 194/282 (68%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
+++++V N S++YTGDYN PD+HLG+A I P++ I+ESTYAT +R +K+ E +
Sbjct: 299 IYKIEVRNFSVIYTGDYNTIPDKHLGSANIPSLNPEIFISESTYATYVRPTKKASELELC 358
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
VHECV +GGKVLIPVFA+GRAQEL ILL+ YW++M + PIYF GLTE A YYK++
Sbjct: 359 NLVHECVHKGGKVLIPVFAIGRAQELSILLDDYWKKMKIHYPIYFGCGLTENANKYYKIY 418
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
+W N + N+FDF +I PF ++++ PMV+FATPGMLH+GLSL FK WA
Sbjct: 419 SSWINSSCMSN-EKENLFDFANISPFLNNYLNEKRPMVLFATPGMLHTGLSLKAFKAWAG 477
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
N++++PG+CVQGT+GHK++ G K++ + I V I Y+SFSAHAD+ GI QLI
Sbjct: 478 NPQNLIVLPGYCVQGTVGHKLIMGEKQISLDGTTYIKVLCKIIYLSFSAHADSNGIQQLI 537
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESC 282
++ PKNV+ VHGE + M L + I + ++ P+ G+ C
Sbjct: 538 KHVSPKNVIFVHGEKNGMQKLAKYISNKHMINSMCPSLGQQC 579
>UNIPROTKB|O77371 [details] [associations]
symbol:PFC0825c "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
InterPro:IPR001279 SMART:SM00849 Pfam:PF07521 GO:GO:0003729
GO:GO:0016787 EMBL:AL844502 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 PIR:T18488
RefSeq:XP_001351256.1 ProteinModelPortal:O77371 PRIDE:O77371
EnsemblProtists:PFC0825c:mRNA GeneID:814500 KEGG:pfa:PFC0825c
EuPathDB:PlasmoDB:PF3D7_0318600 HOGENOM:HOG000283200
ProtClustDB:CLSZ2433497 Uniprot:O77371
Length = 1017
Score = 758 (271.9 bits), Expect = 3.6e-75, P = 3.6e-75
Identities = 137/282 (48%), Positives = 194/282 (68%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
+++++V N S++YTGDYN PD+HLG+A I P++ I+ESTYAT +R +K+ E +
Sbjct: 299 IYKIEVRNFSVIYTGDYNTIPDKHLGSANIPSLNPEIFISESTYATYVRPTKKASELELC 358
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
VHECV +GGKVLIPVFA+GRAQEL ILL+ YW++M + PIYF GLTE A YYK++
Sbjct: 359 NLVHECVHKGGKVLIPVFAIGRAQELSILLDDYWKKMKIHYPIYFGCGLTENANKYYKIY 418
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
+W N + N+FDF +I PF ++++ PMV+FATPGMLH+GLSL FK WA
Sbjct: 419 SSWINSSCMSN-EKENLFDFANISPFLNNYLNEKRPMVLFATPGMLHTGLSLKAFKAWAG 477
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
N++++PG+CVQGT+GHK++ G K++ + I V I Y+SFSAHAD+ GI QLI
Sbjct: 478 NPQNLIVLPGYCVQGTVGHKLIMGEKQISLDGTTYIKVLCKIIYLSFSAHADSNGIQQLI 537
Query: 241 QYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESC 282
++ PKNV+ VHGE + M L + I + ++ P+ G+ C
Sbjct: 538 KHVSPKNVIFVHGEKNGMQKLAKYISNKHMINSMCPSLGQQC 579
>UNIPROTKB|C9J979 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 InterPro:IPR022712 Pfam:PF10996 HOGENOM:HOG000231294
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00514808
ProteinModelPortal:C9J979 SMR:C9J979 STRING:C9J979
Ensembl:ENST00000434694 ArrayExpress:C9J979 Bgee:C9J979
Uniprot:C9J979
Length = 344
Score = 599 (215.9 bits), Expect = 1.9e-57, P = 1.9e-57
Identities = 109/127 (85%), Positives = 120/127 (94%)
Query: 26 GAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFALGRAQE 85
GAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLKKVHE V+RGGKVLIPVFALGRAQE
Sbjct: 218 GAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQE 277
Query: 86 LCILLETYWERMNLQAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMFDFKHIRP 145
LCILLET+WERMNL+ PIYF+ GLTEKA +YYK+FI WTNQKIRKTFVQRNMF+FKHI+
Sbjct: 278 LCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKA 337
Query: 146 FDKSFID 152
FD++F D
Sbjct: 338 FDRAFAD 344
>UNIPROTKB|P79101 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0046872 GO:GO:0003723 GO:GO:0030529 GO:GO:0004521
GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:X95906 EMBL:BC104553 IPI:IPI00708839 RefSeq:NP_776709.1
UniGene:Bt.5045 ProteinModelPortal:P79101 SMR:P79101 STRING:P79101
PRIDE:P79101 Ensembl:ENSBTAT00000026303 GeneID:281712
KEGG:bta:281712 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 InParanoid:P79101 OrthoDB:EOG4FN4H6
NextBio:20805634 ArrayExpress:P79101 GO:GO:0008409 Uniprot:P79101
Length = 684
Score = 568 (205.0 bits), Expect = 1.9e-55, Sum P(2) = 1.9e-55
Identities = 136/393 (34%), Positives = 217/393 (55%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 164 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 223
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-NLQ-APIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ L PIY+A L +K Y+
Sbjct: 224 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 283
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 284 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 343
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 344 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 403
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK + +E+ D N E + + + V++N
Sbjct: 404 EFIRALKPPHVILVHGEQNEMARLKAALIREYE-D-----NDEVHIEVHNPRNTEAVTLN 457
Query: 298 LLKEEAVKYNS--EPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNV 355
E+ K P + +++ G+LV ++ + ++ C +S + S V
Sbjct: 458 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILS---PCD---LSNYTDLAMSTV 511
Query: 356 QISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
+ + + P L+Y QL D +E +IQ
Sbjct: 512 KQTQAIPYTGPFNLLYYQLQKLTGDV-EELEIQ 543
Score = 39 (18.8 bits), Expect = 1.9e-55, Sum P(2) = 1.9e-55
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 922 LKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATK 960
+KQTQ +P L Y K+T + EE ++ + A K
Sbjct: 511 VKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQEKPALK 549
>UNIPROTKB|E2R7R2 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 GeneTree:ENSGT00700000104485 EMBL:AAEX03010701
RefSeq:XP_003639652.1 Ensembl:ENSCAFT00000005417 GeneID:100856414
KEGG:cfa:100856414 Uniprot:E2R7R2
Length = 717
Score = 568 (205.0 bits), Expect = 1.9e-55, Sum P(2) = 1.9e-55
Identities = 136/393 (34%), Positives = 217/393 (55%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 197 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 256
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-NLQ-APIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ L PIY+A L +K Y+
Sbjct: 257 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 316
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 317 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 376
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 377 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 436
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK + +E+ D N E + + + V++N
Sbjct: 437 EFIRALKPPHVILVHGEQNEMARLKAALIREYE-D-----NDEVHIEVHNPRNTEAVTLN 490
Query: 298 LLKEEAVKYNS--EPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNV 355
E+ K P + +++ G+LV ++ + ++ C +S + S V
Sbjct: 491 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILS---PCD---LSNYTDLAMSTV 544
Query: 356 QISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
+ + + P L+Y QL D +E +IQ
Sbjct: 545 KQTQAIPYTGPFNLLYYQLQKLTGDV-EELEIQ 576
Score = 39 (18.8 bits), Expect = 1.9e-55, Sum P(2) = 1.9e-55
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 922 LKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATK 960
+KQTQ +P L Y K+T + EE ++ + A K
Sbjct: 544 VKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQEKPALK 582
>RGD|1305767 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specific factor 3,
73kDa" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0004521 "endoribonuclease activity" evidence=ISO]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISO] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISO] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 RGD:1305767 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6
UniGene:Rn.100522 EMBL:BC099817 IPI:IPI00365532
RefSeq:NP_001025201.1 ProteinModelPortal:Q499P4 SMR:Q499P4
STRING:Q499P4 GeneID:298916 KEGG:rno:298916 InParanoid:Q499P4
NextBio:644507 Genevestigator:Q499P4 Uniprot:Q499P4
Length = 685
Score = 565 (203.9 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
Identities = 135/393 (34%), Positives = 217/393 (55%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 164 MFMIEIAGMKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 223
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-NLQ-APIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ L PIY+A L +K Y+
Sbjct: 224 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 283
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ +GLS +F+
Sbjct: 284 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFES 343
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 344 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 403
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK + +E+ D N E + + + V++N
Sbjct: 404 EFIRALKPPHVILVHGEQNEMARLKAALIREYE-D-----NDEVHIEVHNPRNTEAVTLN 457
Query: 298 LLKEEAVKYNS--EPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNV 355
E+ K P + +++ G+LV ++ + ++ C +S + S V
Sbjct: 458 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILS---PCD---LSNYTDLAMSTV 511
Query: 356 QISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
+ + + P L+Y QL D +E +IQ
Sbjct: 512 KQTQAIPYTGPFYLLYYQLQKLTGDV-EELEIQ 543
Score = 41 (19.5 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 922 LKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATK 960
+KQTQ +P L Y K+T + EE ++ + A K
Sbjct: 511 VKQTQAIPYTGPFYLLYYQLQKLTGDVEELEIQEKPALK 549
>MGI|MGI:1859328 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specificity
factor 3" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISO;IDA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO;IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
MGI:MGI:1859328 GO:GO:0046872 GO:GO:0003723 GO:GO:0030529
GO:GO:0004521 GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 GO:GO:0006398
HOGENOM:HOG000203394 KO:K14403 OMA:YVSFSAH InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409 ChiTaRS:CPSF3
EMBL:AF203969 EMBL:BC023297 IPI:IPI00135099 RefSeq:NP_061283.2
UniGene:Mm.356778 ProteinModelPortal:Q9QXK7 SMR:Q9QXK7
STRING:Q9QXK7 PhosphoSite:Q9QXK7 PaxDb:Q9QXK7 PRIDE:Q9QXK7
Ensembl:ENSMUST00000067284 GeneID:54451 KEGG:mmu:54451
InParanoid:Q8CIM0 NextBio:311332 Bgee:Q9QXK7 CleanEx:MM_CPSF3
Genevestigator:Q9QXK7 GermOnline:ENSMUSG00000054309 Uniprot:Q9QXK7
Length = 684
Score = 563 (203.2 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 135/393 (34%), Positives = 217/393 (55%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 164 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 223
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-NLQ-APIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ L PIY+A L +K Y+
Sbjct: 224 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 283
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ +GLS +F+
Sbjct: 284 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFES 343
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 344 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 403
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK + +E+ D N E + + + V++N
Sbjct: 404 EFIRALKPPHVILVHGEQNEMARLKAALIREYE-D-----NDEVHIEVHNPRNTEAVTLN 457
Query: 298 LLKEEAVKYNS--EPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNV 355
E+ K P + +++ G+LV ++ + ++ C +S + S V
Sbjct: 458 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILS---PCD---LSNYTDLAMSTV 511
Query: 356 QISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
+ + + P L+Y QL D +E +IQ
Sbjct: 512 KQTQAIPYTGPFYLLYYQLQKLTGDV-EELEIQ 543
Score = 41 (19.5 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 922 LKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATK 960
+KQTQ +P L Y K+T + EE ++ + A K
Sbjct: 511 VKQTQAIPYTGPFYLLYYQLQKLTGDVEELEIQEKPALK 549
>UNIPROTKB|G3V6W7 [details] [associations]
symbol:Cpsf3 "Protein Cpsf3" species:10116 "Rattus
norvegicus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
RGD:1305767 GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 EMBL:CH473947 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 UniGene:Rn.100522
Ensembl:ENSRNOT00000009652 Uniprot:G3V6W7
Length = 685
Score = 563 (203.2 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 135/393 (34%), Positives = 217/393 (55%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 164 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 223
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-NLQ-APIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ L PIY+A L +K Y+
Sbjct: 224 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 283
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ +GLS +F+
Sbjct: 284 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFES 343
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 344 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 403
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK + +E+ D N E + + + V++N
Sbjct: 404 EFIRALKPPHVILVHGEQNEMARLKAALIREYE-D-----NDEVHIEVHNPRNTEAVTLN 457
Query: 298 LLKEEAVKYNS--EPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNV 355
E+ K P + +++ G+LV ++ + ++ C +S + S V
Sbjct: 458 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILS---PCD---LSNYTDLAMSTV 511
Query: 356 QISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
+ + + P L+Y QL D +E +IQ
Sbjct: 512 KQTQAIPYTGPFYLLYYQLQKLTGDV-EELEIQ 543
Score = 41 (19.5 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 922 LKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATK 960
+KQTQ +P L Y K+T + EE ++ + A K
Sbjct: 511 VKQTQAIPYTGPFYLLYYQLQKLTGDVEELEIQEKPALK 549
>UNIPROTKB|I3LKR1 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0004521 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:FP312696
Ensembl:ENSSSCT00000027309 Uniprot:I3LKR1
Length = 687
Score = 559 (201.8 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 135/393 (34%), Positives = 216/393 (54%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 167 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 226
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-NLQ-APIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ L PIY+A L +K Y+
Sbjct: 227 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 286
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 287 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 346
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 347 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 406
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK + +E+ D N E + + + V++N
Sbjct: 407 EFIRALKPPHVILVHGEQNEMARLKAALIREYE-D-----NDEVHIEVHNPRNTEAVTLN 460
Query: 298 LLKEEAVKYNS--EPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNV 355
E+ K P + +++ G+LV ++ + ++ C +S + S V
Sbjct: 461 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILS---PCD---LSNYTDLAMSTV 514
Query: 356 QISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
+ + + P L+ QL D +E +IQ
Sbjct: 515 KQTQAIPYTGPFNLLSYQLQKLTGDV-EELEIQ 546
Score = 41 (19.5 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 922 LKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATK 960
+KQTQ +P L Y K+T + EE ++ + A K
Sbjct: 514 VKQTQAIPYTGPFNLLSYQLQKLTGDVEELEIQEKPALK 552
>ZFIN|ZDB-GENE-030131-3275 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specific factor 3" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-030131-3275 GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 CTD:51692
HOVERGEN:HBG051107 EMBL:AY648793 IPI:IPI00509063
RefSeq:NP_001003836.1 UniGene:Dr.77231 ProteinModelPortal:Q6DRG6
SMR:Q6DRG6 STRING:Q6DRG6 GeneID:324554 KEGG:dre:324554
NextBio:20808833 ArrayExpress:Q6DRG6 Uniprot:Q6DRG6
Length = 690
Score = 571 (206.1 bits), Expect = 2.0e-54, P = 2.0e-54
Identities = 147/449 (32%), Positives = 234/449 (52%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LITESTY T I + + RE F
Sbjct: 171 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFC 230
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-NLQ-APIYFAVGLTEKATNYYK 118
VH+ V+R G+ LIPVFALGRAQEL ++L+ YW+ L PIY+A L +K Y+
Sbjct: 231 NTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 290
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 291 TYVNAMNDKIRKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 350
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 351 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 410
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK + +E+ D N E + + + V++N
Sbjct: 411 EFIRALKPPHVILVHGEQNEMARLKAALIREYE-D-----NDEVHIEVHNPRNTEAVTLN 464
Query: 298 LLKEEAVKY-NSEPPNPLKERQ-IHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNV 355
E+ K S + Q + G+LV K+ S ++ + +S + S V
Sbjct: 465 FRGEKLAKVMGSLADKKCSQGQRVSGILVKKNFSYHILSPSD------LSNYTDLAMSTV 518
Query: 356 QISDSSPINKTLELIYDQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFV 415
+ + + P L+ QL +L +E I+++E + +N V +
Sbjct: 519 KQTQAIPFTGPFPLLLSQL-RHLTGDVEE--IEMSEKSTVKVFNSIT---VIHENNLVVL 572
Query: 416 TW---PNQDEEVGKIVLHVLKSMSNTQGQ 441
W P D + VL+ SN + Q
Sbjct: 573 EWFANPLNDMYADAVTTVVLEVQSNPKAQ 601
>UNIPROTKB|G5E9W3 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:CH471053 GO:GO:0003723 GO:GO:0004521
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 GO:GO:0008409
EMBL:AC080162 UniGene:Hs.515972 HGNC:HGNC:2326 ChiTaRS:CPSF3
ProteinModelPortal:G5E9W3 SMR:G5E9W3 PRIDE:G5E9W3
Ensembl:ENST00000460593 ArrayExpress:G5E9W3 Bgee:G5E9W3
Uniprot:G5E9W3
Length = 647
Score = 559 (201.8 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 135/393 (34%), Positives = 216/393 (54%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 127 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 186
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-NLQ-APIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ L PIY+A L +K Y+
Sbjct: 187 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 246
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 247 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 306
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 307 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 366
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK + +E+ D N E + + + V++N
Sbjct: 367 EFIRALKPPHVILVHGEQNEMARLKAALIREYE-D-----NDEVHIEVHNPRNTEAVTLN 420
Query: 298 LLKEEAVKYNS--EPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNV 355
E+ K P + +++ G+LV ++ + ++ C +S + S V
Sbjct: 421 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILS---PCD---LSNYTDLAMSTV 474
Query: 356 QISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
+ + + P L+ QL D +E +IQ
Sbjct: 475 KQTQAIPYTGPFNLLCYQLQKLTGDV-EELEIQ 506
Score = 38 (18.4 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 922 LKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATK 960
+KQTQ +P L Y K+T + EE ++ + A K
Sbjct: 474 VKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQEKPALK 512
>UNIPROTKB|Q9UKF6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
EMBL:AF017269 Pfam:PF07521 EMBL:AF171877 EMBL:CH471053
GO:GO:0046872 Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0004521 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 Reactome:REACT_78 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409
EMBL:AC080162 EMBL:BC011654 EMBL:BC020211 IPI:IPI00007818
RefSeq:NP_057291.1 UniGene:Hs.515972 PDB:2I7T PDB:2I7V PDBsum:2I7T
PDBsum:2I7V ProteinModelPortal:Q9UKF6 SMR:Q9UKF6 DIP:DIP-42501N
MINT:MINT-1742891 STRING:Q9UKF6 PhosphoSite:Q9UKF6 DMDM:18203503
PaxDb:Q9UKF6 PeptideAtlas:Q9UKF6 PRIDE:Q9UKF6 DNASU:51692
Ensembl:ENST00000238112 GeneID:51692 KEGG:hsa:51692 UCSC:uc002qzo.1
GeneCards:GC02P009514 HGNC:HGNC:2326 HPA:HPA034657 MIM:606029
neXtProt:NX_Q9UKF6 PharmGKB:PA26843 InParanoid:Q9UKF6
PhylomeDB:Q9UKF6 ChiTaRS:CPSF3 EvolutionaryTrace:Q9UKF6
GenomeRNAi:51692 NextBio:55702 ArrayExpress:Q9UKF6 Bgee:Q9UKF6
CleanEx:HS_CPSF3 Genevestigator:Q9UKF6 GermOnline:ENSG00000119203
Uniprot:Q9UKF6
Length = 684
Score = 559 (201.8 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 135/393 (34%), Positives = 216/393 (54%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 164 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 223
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-NLQ-APIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ L PIY+A L +K Y+
Sbjct: 224 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 283
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 284 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 343
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 344 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 403
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK + +E+ D N E + + + V++N
Sbjct: 404 EFIRALKPPHVILVHGEQNEMARLKAALIREYE-D-----NDEVHIEVHNPRNTEAVTLN 457
Query: 298 LLKEEAVKYNS--EPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNV 355
E+ K P + +++ G+LV ++ + ++ C +S + S V
Sbjct: 458 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILS---PCD---LSNYTDLAMSTV 511
Query: 356 QISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
+ + + P L+ QL D +E +IQ
Sbjct: 512 KQTQAIPYTGPFNLLCYQLQKLTGDV-EELEIQ 543
Score = 38 (18.4 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 922 LKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATK 960
+KQTQ +P L Y K+T + EE ++ + A K
Sbjct: 511 VKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQEKPALK 549
>UNIPROTKB|F1NKW5 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0003723 GO:GO:0004521 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:AADN02018718
IPI:IPI00600642 Ensembl:ENSGALT00000026493 Uniprot:F1NKW5
Length = 685
Score = 566 (204.3 bits), Expect = 6.8e-54, P = 6.8e-54
Identities = 136/393 (34%), Positives = 217/393 (55%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 164 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 223
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM-NLQ-APIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ L PIY+A L +K Y+
Sbjct: 224 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 283
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 284 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 343
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 344 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 403
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK + +E+ D N E + + + V++N
Sbjct: 404 EFIRALKPPHVILVHGEQNEMARLKAALIREYE-D-----NDEVHIEVHNPRNTEAVTLN 457
Query: 298 LLKEEAVKYNSE--PPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNV 355
E+ K P + ++I G+LV ++ + ++ + ++ V T +
Sbjct: 458 FRGEKLAKVMGSLADKKPEQGQRISGILVKRNFNYHILSPCDLSNYTDLAMSTV--TQTL 515
Query: 356 QISDSSPINKTLELIYDQLLSYLQDKSQEYKIQ 388
I + P N L++ QL D +E +IQ
Sbjct: 516 AIPYTGPFN----LLFYQLQKLTGDV-EEIEIQ 543
>FB|FBgn0261065 [details] [associations]
symbol:Cpsf73 "Cleavage and polyadenylation specificity
factor 73" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0003677 GO:GO:0006378 GO:GO:0016787 GO:GO:0005847
GO:GO:0006379 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 KO:K14403 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AY119128 RefSeq:NP_650738.1
UniGene:Dm.13714 SMR:Q9VE51 IntAct:Q9VE51 MINT:MINT-804945
STRING:Q9VE51 EnsemblMetazoa:FBtr0083690 GeneID:42240
KEGG:dme:Dmel_CG7698 UCSC:CG7698-RA CTD:42240 FlyBase:FBgn0261065
InParanoid:Q9VE51 OrthoDB:EOG4P5HR4 GenomeRNAi:42240 NextBio:827838
Uniprot:Q9VE51
Length = 684
Score = 563 (203.2 bits), Expect = 1.4e-53, P = 1.4e-53
Identities = 131/377 (34%), Positives = 211/377 (55%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ I+YTGD++ DRHL AA + +PD+LITESTY T I + + RE F
Sbjct: 170 MFMIEIAGIKILYTGDFSRQEDRHLMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFT 229
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-ERMNL-QAPIYFAVGLTEKATNYYK 118
V + V +GG+ LIPVFALGRAQEL ++L+ +W + +L + PIY+A L +K Y+
Sbjct: 230 SLVQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQ 289
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
+I N +IR+ N F F+HI ++ GP V+ A+PGM+ SGLS +F+
Sbjct: 290 TYINAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFES 349
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W N +I+ G+CV+GT+ VLS +++ + Q + + M+++Y+SFSAH D +
Sbjct: 350 WCTDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTS 409
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVN 297
+ I+ +P +V+LVHGE ++M LK +++E+ D A+ + F ++D+
Sbjct: 410 EFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEAD----ASTDIKFYNPRNTHAVDLYFR 465
Query: 298 LLKEEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQI 357
K V + N ++ GVLV +D L+ + K +S +V T I
Sbjct: 466 GEKTAKVMGSLAAKNSEVGSKLSGVLVKRDFKYHLLAPSDLGKYTDMSMSVV--TQRQSI 523
Query: 358 SDSSPINKTLELIYDQL 374
S ++ TLEL+ D++
Sbjct: 524 PWGSSLS-TLELLLDRI 539
>TAIR|locus:2206076 [details] [associations]
symbol:CPSF73-I "cleavage and polyadenylation specificity
factor 73-I" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0045787 "positive regulation of cell cycle" evidence=RCA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006397
GO:GO:0090305 EMBL:AC018908 GO:GO:0004518 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
EMBL:AY140900 EMBL:AY150478 EMBL:AY074280 EMBL:AK316692
EMBL:AK316794 IPI:IPI00533462 PIR:G96635 RefSeq:NP_001031215.1
RefSeq:NP_176297.1 RefSeq:NP_849835.1 UniGene:At.23510
ProteinModelPortal:Q9C952 SMR:Q9C952 IntAct:Q9C952 STRING:Q9C952
PaxDb:Q9C952 PRIDE:Q9C952 EnsemblPlants:AT1G61010.1
EnsemblPlants:AT1G61010.2 EnsemblPlants:AT1G61010.3 GeneID:842393
KEGG:ath:AT1G61010 TAIR:At1g61010 HOGENOM:HOG000203394
InParanoid:Q9C952 KO:K14403 OMA:YVSFSAH PhylomeDB:Q9C952
ProtClustDB:CLSN2681829 Genevestigator:Q9C952 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 Uniprot:Q9C952
Length = 693
Score = 546 (197.3 bits), Expect = 4.8e-53, Sum P(2) = 4.8e-53
Identities = 117/287 (40%), Positives = 164/287 (57%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF V + I+YTGDY+ DRHL AA + + PD+ I EST + S+ RE+ F
Sbjct: 174 MFMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFT 233
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-ERMNLQ-APIYFAVGLTEKATNYYK 118
+H V +GG+VLIP FALGRAQEL ++L+ YW +L PIY+A L +K Y+
Sbjct: 234 DVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQ 293
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
+I N +IR F N F FKHI P + ++ GP VV ATPG L SGLS +F
Sbjct: 294 TYILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDS 353
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N I+PG+ V+GT+ +++ K++ N + M + Y+SFSAHAD
Sbjct: 354 WCSDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 413
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF---NLDCFMPANGES 281
++ P N++LVHGEA++M+ LK+K+ EF N P N ES
Sbjct: 414 TFLKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCES 460
Score = 39 (18.8 bits), Expect = 4.8e-53, Sum P(2) = 4.8e-53
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 302 EAVKYNSEPPNPLKERQIHGVLVIKDSS---ISLMDVDEACKEVGISRHIVRFTSNV 355
E+V+++++ + L ++H + +K S ISL + ++ +S IV N+
Sbjct: 542 ESVEFSTDEESGLPALKVHERVTVKQESEKHISLQWSSDPISDM-VSDSIVALILNI 597
>DICTYBASE|DDB_G0274799 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specificity factor 73 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IC] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0274799 Pfam:PF07521 GO:GO:0046872 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000012 GO:GO:0003730
GO:GO:0004519 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
RefSeq:XP_643926.1 ProteinModelPortal:Q86A79 SMR:Q86A79
STRING:Q86A79 EnsemblProtists:DDB0233696 GeneID:8619353
KEGG:ddi:DDB_G0274799 ProtClustDB:CLSZ2431003 Uniprot:Q86A79
Length = 774
Score = 562 (202.9 bits), Expect = 2.2e-52, P = 2.2e-52
Identities = 129/383 (33%), Positives = 210/383 (54%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ I+YTGD++ DRHL A + D+LI ESTY + + + RE+ F
Sbjct: 191 MFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFT 250
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-ERMNLQ-APIYFAVGLTEKATNYYK 118
VH+ V+R GK LIPVFALGRAQEL ++L+ YW L PIY+A L +K Y+
Sbjct: 251 SSVHQVVERNGKCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYR 310
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIFK 176
+I N ++R F N F+FKHI+ +SF D+ GP V A+PGML SGLS +F+
Sbjct: 311 TYINMMNDRVRAQFDVSNPFEFKHIKNIKGIESF-DDRGPCVFMASPGMLQSGLSRQLFE 369
Query: 177 KWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGI 236
+W + N +++PG+ V+GT+ ++S ++ + + + + + Y+SFSAH+D
Sbjct: 370 RWCSDKRNGIVIPGYSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQT 429
Query: 237 MQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFN-LDCFMPANGESCFVQTDMKISIDVS 295
+ IQ +P +V+LVHG+A++M L++ + +F ++ P N S V+
Sbjct: 430 SEFIQEIQPPHVVLVHGDANEMSRLRQSLVAKFKTINVLTPKNAMS------------VA 477
Query: 296 VNLLKEEAVK-YNSEPPNPLKERQI-HGVLVIKDSSISLMDVDEACKEVGISRHIVRFTS 353
+ E+ K S NP K+ I G+LV KD + ++ + + +I++
Sbjct: 478 LEFRPEKVAKTLGSIITNPPKQNDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQKL 537
Query: 354 NVQISDSSPIN-KTLELIYDQLL 375
+ + + I TLE IY+Q++
Sbjct: 538 TLPFAQTYHILISTLEQIYEQII 560
>WB|WBGene00013460 [details] [associations]
symbol:cpsf-3 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AL132951 RefSeq:NP_502553.2
ProteinModelPortal:Q95PY8 SMR:Q95PY8 STRING:Q95PY8 PaxDb:Q95PY8
EnsemblMetazoa:Y67H2A.1.1 EnsemblMetazoa:Y67H2A.1.2 GeneID:178285
KEGG:cel:CELE_Y67H2A.1 UCSC:Y67H2A.1 CTD:178285 WormBase:Y67H2A.1
InParanoid:Q95PY8 NextBio:900506 Uniprot:Q95PY8
Length = 707
Score = 532 (192.3 bits), Expect = 3.2e-50, P = 3.2e-50
Identities = 124/346 (35%), Positives = 192/346 (55%)
Query: 2 FQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 61
F +++ ++YTGD++ DRHL AA I P +LITESTY T + + RE+ F +
Sbjct: 166 FMIEIAGVRVLYTGDFSCLEDRHLCAAEIPPITPQVLITESTYGTQTHEDRAVREKRFTQ 225
Query: 62 KVHECVDRGGKVLIPVFALGRAQELCILLETYWE-RMNLQ-APIYFAVGLTEKATNYYKM 119
VH+ V RGG+ LIP FA+G AQEL ++L+ YWE L P+Y+A L +K + Y+
Sbjct: 226 MVHDIVTRGGRCLIPAFAIGPAQELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQT 285
Query: 120 FITWTNQKIRKTFVQRNMFDFKHI---RPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFK 176
F+ N +I+K +N F FKH+ R D+ ++ GP VV ATPGML SG S +F+
Sbjct: 286 FVNGMNSRIQKQIAVKNPFIFKHVSTLRGMDQ--FEDAGPCVVLATPGMLQSGFSRELFE 343
Query: 177 KWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGI 236
W P N I+ G+CV+GT+ +LS +++ + + + ++M + Y+SFSAH D
Sbjct: 344 SWCPDTKNGCIIAGYCVEGTLAKHILSEPEEIVSLSGEKLPMRMQVGYVSFSAHTDYHQT 403
Query: 237 MQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFN-----LDCFMPANGESCFVQTDMKIS 291
++ +P +++LVHGE +M LK I+++F ++ P N E +Q + +
Sbjct: 404 SNFVKALKPPHLVLVHGELHEMSRLKSGIERQFQDDNIPIEVHNPRNTERLQLQFRGEKT 463
Query: 292 IDVSVNLLKEEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDE 337
V L + V N+E I GVLV + S S+M +E
Sbjct: 464 AKVIGKLAQR--VPENNET--------ISGVLVKNNFSYSIMVPEE 499
>POMBASE|SPAC17G6.16c [details] [associations]
symbol:ysh1 "mRNA cleavage and polyadenylation
specificity factor complex endoribonuclease subunit Ysh1"
species:4896 "Schizosaccharomyces pombe" [GO:0004521
"endoribonuclease activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IC]
[GO:0006379 "mRNA cleavage" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 PomBase:SPAC17G6.16c Pfam:PF07521 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0006378
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
OrthoDB:EOG41ZJK7 PIR:T37848 RefSeq:NP_594263.2 STRING:O13794
EnsemblFungi:SPAC17G6.16c.1 GeneID:2542258 NextBio:20803322
Uniprot:O13794
Length = 757
Score = 503 (182.1 bits), Expect = 3.1e-45, P = 3.1e-45
Identities = 123/374 (32%), Positives = 206/374 (55%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
M+ V++ +I++TGDY+ DRHL A + RPD+LITESTY T + +E L
Sbjct: 171 MYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLL 230
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWER-MNLQA-PIYFAVGLTEKATNYYK 118
+H + GG+VL+PVFALGRAQEL ++L+ YW ++L++ PIY+A L K ++
Sbjct: 231 NIIHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQ 290
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPF-DKSFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N IRK F +RN F F+ ++ + D+ GP V+ A+PGML +G+S + ++
Sbjct: 291 TYVNMMNDNIRKIFAERNPFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVSRTLLER 350
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
WAP N L++ G+ V+GT+ ++ + ++ + Q I +MA+E +SF+AH D
Sbjct: 351 WAPDPRNTLLLTGYSVEGTMAKQITNEPIEIVSLSGQKIPRRMAVEELSFAAHVDYLQNS 410
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFN---LDC--FMPANGESCFVQTDMKISI 292
+ I +++LVHGE + M LK + +F+ +D + P N C V +
Sbjct: 411 EFIDLVNADHIILVHGEQTNMGRLKSALASKFHNRKVDVKVYTPRN---C-VPLYLPFKG 466
Query: 293 DVSVNLLKEEAVKYNSEPPNPLKERQI-HGVLVIKDSSISLM------DVDEACKEVGIS 345
+ V L + AV +P KE I G+L+ KD++ LM D + V
Sbjct: 467 ERLVRALGKVAVH---KP----KEGDIMSGILIQKDANYKLMSAEDLRDFSDLTTTVLTQ 519
Query: 346 RHIVRFTSNVQISD 359
+ ++ F S++++++
Sbjct: 520 KQVIPFFSSMELAN 533
>MGI|MGI:3041259 [details] [associations]
symbol:Mettl25 "methyltransferase like 25" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008168 "methyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
MGI:MGI:3041259 GO:GO:0008168 InterPro:IPR025714 Pfam:PF13679
CTD:84190 eggNOG:NOG313369 HOGENOM:HOG000054213 HOVERGEN:HBG057610
OrthoDB:EOG4BZN2J EMBL:AK144620 EMBL:BC067068 IPI:IPI00988365
RefSeq:NP_997405.2 UniGene:Mm.250875 ProteinModelPortal:Q6NXH8
SMR:Q6NXH8 PhosphoSite:Q6NXH8 PRIDE:Q6NXH8
Ensembl:ENSMUST00000046638 GeneID:216292 KEGG:mmu:216292
UCSC:uc007gyo.2 GeneTree:ENSGT00530000063745 InParanoid:Q6NXH8
NextBio:375103 Bgee:Q6NXH8 CleanEx:MM_BC067068
Genevestigator:Q6NXH8 GermOnline:ENSMUSG00000036009 Uniprot:Q6NXH8
Length = 597
Score = 339 (124.4 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 80/228 (35%), Positives = 127/228 (55%)
Query: 804 ITHFVTPDSDISSILSQAYPQDSLHNVCIMGLHTCGDLSGTALRLFT-KSSLQCLVQVGC 862
+T F+T DS + I+ + L + ++GLHTCGDL+ + LR+FT K+ ++ + VGC
Sbjct: 349 LTSFITADSQLHDII------EDLEDCLMVGLHTCGDLAPSTLRIFTSKAEVKAVCSVGC 402
Query: 863 CYHLLEEEFIRSPFWKDVDQSLYEHGYGFPLSEHLRSRKFFLGRNVRMSGTQSPERVIDL 922
CYHLL EEF + D+ E+ +GFP+ +L+ ++ GRN RMS + +RV
Sbjct: 403 CYHLLSEEFEN----QHKDRCANEN-WGFPMCHYLKEERWCCGRNARMSACLALQRVAVG 457
Query: 923 KQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATKCSNFVEYVHRAXXXXXXXXXXX 982
+ T LFYRA+L+ ++ I+ E V G++ +KCS+F+EYV +
Sbjct: 458 QGLPTESLFYRAVLQNIIKDYYGISKCEQHV-GKIYSKCSSFLEYVRMSLKKLGLDESKV 516
Query: 983 XXXXTR-LFNSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1029
+ +++ L+ + LK LAP IE LI+LDR+ YL+EQ
Sbjct: 517 SEEIIMDYYENYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQ 564
Score = 195 (73.7 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 40/112 (35%), Positives = 64/112 (57%)
Query: 620 VAAVTNSCDSSHIIDLGSTITVDELFSKLQARKCGLVVESAKVSQLMSEKKSYEVQVMSQ 679
V A + + +LG ++L + LQ K V E+ K + M+ KKS+EVQ MS+
Sbjct: 97 VEAFARTAKHYSVQNLGLCTPSEQLLTALQGNKRQRVDENVKAIEFMNTKKSHEVQAMSE 156
Query: 680 VVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVR 731
++ ++ + C IID+G G+GYLS+ L+L++G +D + NTHGA R
Sbjct: 157 LICSIADYCGLKQIIDVGSGKGYLSSFLSLKYGLNVYGIDSSNTNTHGAKER 208
Score = 140 (54.3 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 40/160 (25%), Positives = 77/160 (48%)
Query: 485 IKNTIDEMIEFITPNIACVNTHTVHFMVEKLWETTI---PKAILSQVNNSPSFDSLLEEF 541
+ + + ++ F+ +A + HTV F + +W+ + P+++L+ + S E
Sbjct: 16 LHDKLQGLLSFLRGALAISSAHTVDFYTKSVWQELVDLPPESVLAALRESAVEAEPREAE 75
Query: 542 WKSRQDN----HVETNSELVKFFQAADKFRLTSLMNGESIITVDELFSKLQARKCGQVVE 597
S ET+ +L+ A + S+ N ++L + LQ K +V E
Sbjct: 76 TGSGFTELPKIFCETSQKLLSVEAFARTAKHYSVQNLGLCTPSEQLLTALQGNKRQRVDE 135
Query: 598 SAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGS 637
+ K + M+ KKS+EVQ MS+++ ++ + C IID+GS
Sbjct: 136 NVKAIEFMNTKKSHEVQAMSELICSIADYCGLKQIIDVGS 175
Score = 98 (39.6 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 1044 TQVDDEEVTRLFDSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1094
++V +E + +++++ L+ + LK LAP IE LI+LDR+ YL+EQ
Sbjct: 514 SKVSEEIIMDYYENYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQ 564
Score = 45 (20.9 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 193 VQGTIGHKVLSGVKKLEFEN-KQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVL 249
+QG +V VK +EF N K+ +V+ E + + AD G+ Q+I K L
Sbjct: 125 LQGNKRQRVDENVKAIEFMNTKKSHEVQAMSELIC--SIADYCGLKQIIDVGSGKGYL 180
>CGD|CAL0005344 [details] [associations]
symbol:orf19.5486 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0004521 "endoribonuclease
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034247 "snoRNA splicing"
evidence=IEA] [GO:0031126 "snoRNA 3'-end processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006369 "termination
of RNA polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 CGD:CAL0005344 Pfam:PF07521 GO:GO:0005634
GO:GO:0042493 GO:GO:0046872 GO:GO:0006397 GO:GO:0090305
GO:GO:0004519 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACQ01000196 EMBL:AACQ01000195
RefSeq:XP_711478.1 RefSeq:XP_711502.1 ProteinModelPortal:Q59P50
STRING:Q59P50 GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 457 (165.9 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 97/277 (35%), Positives = 163/277 (58%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
M+ +++G +++TGDY+ +RHL AA + +PD+LI+EST+ T + + ER
Sbjct: 262 MYFIEIGGLKVLFTGDYSREENRHLHAAEVPPLKPDILISESTFGTGTLEPRIELERKLT 321
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-ERMNLQ-APIYFAVGLTEKATNYYK 118
+H + +GG+VL+PVFALG AQEL ++L+ YW + +LQ +++A L +K Y+
Sbjct: 322 THIHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYE 381
Query: 119 MFITWTNQKIRKTFV---QRNMFDFKHIRPF-DKSFIDNPGPMVVFATPGMLHSGLSLII 174
+ N KIR + + N FDFK+I+ D S + GP VV ATPGML +G+S +
Sbjct: 382 TYTGIMNDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQL 441
Query: 175 FKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDV--KMAIEYMSFSAHAD 232
+KWAP N++I+ G+ V+GT+ ++L ++ + + ++ IE +SF+AH D
Sbjct: 442 LEKWAPDGKNLVILTGYSVEGTMAKELLKEPTMIQSATNPDMTIPRRIGIEEISFAAHVD 501
Query: 233 AKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF 269
+ + I+ P V+LVHG++ M LK + ++
Sbjct: 502 FQQNSEFIEKVSPSKVILVHGDSVPMGRLKSALLSKY 538
Score = 68 (29.0 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 305 KYNSEPPNPLKERQI-HGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQIS-DSSP 362
K N N LK Q+ GVLV KD +++L+ + + + +S IV+ +++I+ D S
Sbjct: 623 KPNESSINVLKTGQVVSGVLVSKDFNLNLLQLQDLHEFTQLSTSIVKSKMHLKINADISL 682
Query: 363 INKTLELIYDQLLSYLQDKSQEYK 386
+ LE ++ + + + D +E++
Sbjct: 683 MVWHLEQMFGYI-NVINDDDEEWE 705
Score = 49 (22.3 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 538 LEEFWKSRQDNHVETNSELVKFFQAADKFRLTSLMNGESIITVDELFSKLQARKCGQVVE 597
L+ K QD NS++ + + ++ NGE+ T S + K GQVV
Sbjct: 580 LQVLKKIIQDEVSAENSKITELTEEKEEADEIKEDNGETDTTQKPNESSINVLKTGQVVS 639
Query: 598 SAKVSQ 603
VS+
Sbjct: 640 GVLVSK 645
>UNIPROTKB|Q59P50 [details] [associations]
symbol:YSH1 "Endoribonuclease YSH1" species:237561 "Candida
albicans SC5314" [GO:0042493 "response to drug" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 CGD:CAL0005344
Pfam:PF07521 GO:GO:0005634 GO:GO:0042493 GO:GO:0046872
GO:GO:0006397 GO:GO:0090305 GO:GO:0004519 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:AACQ01000196 EMBL:AACQ01000195 RefSeq:XP_711478.1
RefSeq:XP_711502.1 ProteinModelPortal:Q59P50 STRING:Q59P50
GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 457 (165.9 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 97/277 (35%), Positives = 163/277 (58%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
M+ +++G +++TGDY+ +RHL AA + +PD+LI+EST+ T + + ER
Sbjct: 262 MYFIEIGGLKVLFTGDYSREENRHLHAAEVPPLKPDILISESTFGTGTLEPRIELERKLT 321
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYW-ERMNLQ-APIYFAVGLTEKATNYYK 118
+H + +GG+VL+PVFALG AQEL ++L+ YW + +LQ +++A L +K Y+
Sbjct: 322 THIHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYE 381
Query: 119 MFITWTNQKIRKTFV---QRNMFDFKHIRPF-DKSFIDNPGPMVVFATPGMLHSGLSLII 174
+ N KIR + + N FDFK+I+ D S + GP VV ATPGML +G+S +
Sbjct: 382 TYTGIMNDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQL 441
Query: 175 FKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDV--KMAIEYMSFSAHAD 232
+KWAP N++I+ G+ V+GT+ ++L ++ + + ++ IE +SF+AH D
Sbjct: 442 LEKWAPDGKNLVILTGYSVEGTMAKELLKEPTMIQSATNPDMTIPRRIGIEEISFAAHVD 501
Query: 233 AKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF 269
+ + I+ P V+LVHG++ M LK + ++
Sbjct: 502 FQQNSEFIEKVSPSKVILVHGDSVPMGRLKSALLSKY 538
Score = 68 (29.0 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 305 KYNSEPPNPLKERQI-HGVLVIKDSSISLMDVDEACKEVGISRHIVRFTSNVQIS-DSSP 362
K N N LK Q+ GVLV KD +++L+ + + + +S IV+ +++I+ D S
Sbjct: 623 KPNESSINVLKTGQVVSGVLVSKDFNLNLLQLQDLHEFTQLSTSIVKSKMHLKINADISL 682
Query: 363 INKTLELIYDQLLSYLQDKSQEYK 386
+ LE ++ + + + D +E++
Sbjct: 683 MVWHLEQMFGYI-NVINDDDEEWE 705
Score = 49 (22.3 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 538 LEEFWKSRQDNHVETNSELVKFFQAADKFRLTSLMNGESIITVDELFSKLQARKCGQVVE 597
L+ K QD NS++ + + ++ NGE+ T S + K GQVV
Sbjct: 580 LQVLKKIIQDEVSAENSKITELTEEKEEADEIKEDNGETDTTQKPNESSINVLKTGQVVS 639
Query: 598 SAKVSQ 603
VS+
Sbjct: 640 GVLVSK 645
>SGD|S000004267 [details] [associations]
symbol:YSH1 "Putative endoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0006379 "mRNA
cleavage" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0031126 "snoRNA 3'-end
processing" evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0034247 "snoRNA splicing" evidence=IMP] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA;IPI] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0004521 "endoribonuclease activity"
evidence=ISS;IMP] [GO:0003723 "RNA binding" evidence=IC]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 SGD:S000004267
Pfam:PF07521 GO:GO:0046872 GO:GO:0006378 EMBL:BK006945
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 EMBL:U17245 HOGENOM:HOG000203394 KO:K14403
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0031126 GO:GO:0034247
OMA:EISFAAH OrthoDB:EOG41ZJK7 PIR:S51413 RefSeq:NP_013379.1
ProteinModelPortal:Q06224 SMR:Q06224 DIP:DIP-2470N IntAct:Q06224
MINT:MINT-375457 STRING:Q06224 PaxDb:Q06224 PeptideAtlas:Q06224
EnsemblFungi:YLR277C GeneID:850983 KEGG:sce:YLR277C CYGD:YLR277c
NextBio:967501 Genevestigator:Q06224 GermOnline:YLR277C
Uniprot:Q06224
Length = 779
Score = 462 (167.7 bits), Expect = 5.5e-41, Sum P(2) = 5.5e-41
Identities = 100/280 (35%), Positives = 163/280 (58%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+++ +++TGDY+ DRHL +A + ++LI EST+ T + + RER
Sbjct: 169 MFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLT 228
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERM--NL---QAPIYFAVGLTEKATN 115
+ +H V RGG+VL+PVFALGRAQE+ ++L+ YW + L Q PI++A L +K +
Sbjct: 229 QLIHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMS 288
Query: 116 YYKMFITWTNQKIRKTF--VQRNMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLS 171
++ ++ N IRK F Q N F FK+I + F D GP V+ A+PGML SGLS
Sbjct: 289 VFQTYVNMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF-GPSVMLASPGMLQSGLS 347
Query: 172 LIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKL-EFENKQI-IDVKMAIEYMSFSA 229
+ ++W P + N++++ G+ ++GT+ ++ + N +I I + +E +SF+A
Sbjct: 348 RDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAA 407
Query: 230 HADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF 269
H D + ++ I+ N++LVHGEA+ M LK + F
Sbjct: 408 HVDFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNF 447
Score = 52 (23.4 bits), Expect = 5.5e-41, Sum P(2) = 5.5e-41
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 476 KHQKETMELIKNTIDEMIEFITP-NIACVNTHTVHFMVEKLWETTIPK---AILSQVNNS 531
K ++E+ + + NT +++ + + VNT V + L T+ AIL V+++
Sbjct: 608 KVKEESKDNLTNTGKLILQIMGDIKLTIVNTLAVVEWTQDLMNDTVADSIIAILMNVDSA 667
Query: 532 PSFDSLLEEFWKSRQDNHVETNSE 555
P+ L N+V++N++
Sbjct: 668 PASVKLSSHSCDDHDHNNVQSNAQ 691
Score = 41 (19.5 bits), Expect = 7.8e-40, Sum P(2) = 7.8e-40
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 325 IKDSSIS-LMDVDEACKEVGISRH 347
+ DS I+ LM+VD A V +S H
Sbjct: 653 VADSIIAILMNVDSAPASVKLSSH 676
>UNIPROTKB|Q8N6Q8 [details] [associations]
symbol:METTL25 "Methyltransferase-like protein 25"
species:9606 "Homo sapiens" [GO:0008168 "methyltransferase
activity" evidence=IEA] GO:GO:0008168 InterPro:IPR025714
Pfam:PF13679 EMBL:AC083811 EMBL:AC089998 EMBL:BC029120
EMBL:AK026442 IPI:IPI00297450 RefSeq:NP_115606.2 UniGene:Hs.506222
ProteinModelPortal:Q8N6Q8 SMR:Q8N6Q8 PhosphoSite:Q8N6Q8
DMDM:74729167 PaxDb:Q8N6Q8 PRIDE:Q8N6Q8 DNASU:84190
Ensembl:ENST00000248306 GeneID:84190 KEGG:hsa:84190 UCSC:uc001szq.3
CTD:84190 GeneCards:GC12P082754 HGNC:HGNC:26228 HPA:HPA039534
HPA:HPA041207 neXtProt:NX_Q8N6Q8 PharmGKB:PA142672297
eggNOG:NOG313369 HOGENOM:HOG000054213 HOVERGEN:HBG057610
InParanoid:Q8N6Q8 OMA:HVGKIYS OrthoDB:EOG4BZN2J PhylomeDB:Q8N6Q8
GenomeRNAi:84190 NextBio:73582 ArrayExpress:Q8N6Q8 Bgee:Q8N6Q8
CleanEx:HS_C12orf26 Genevestigator:Q8N6Q8
GermOnline:ENSG00000127720 Uniprot:Q8N6Q8
Length = 603
Score = 335 (123.0 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 79/229 (34%), Positives = 127/229 (55%)
Query: 804 ITHFVTPDSDISSILSQAYPQDSLHNVCIMGLHTCGDLSGTALRLFTKSS-LQCLVQVGC 862
+T F+T DS++ I+ +D L ++GLHTCGDL+ LR+FT +S ++ + VGC
Sbjct: 359 LTSFITADSELHDIIKDL--EDCL----MVGLHTCGDLAPNTLRIFTSNSEIKGVCSVGC 412
Query: 863 CYHLLEEEFIRSPFWKDVDQSLYEHGYGFPLSEHLRSRKFFLGRNVRMSGTQSPERVIDL 922
CYHLL EEF ++ + + +GFP+ +L+ ++ GRN RMS + ERV
Sbjct: 413 CYHLLSEEF------ENQHKERTQEKWGFPMCHYLKEERWCCGRNARMSACLALERVAAG 466
Query: 923 KQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATKCSNFVEYVHRAXXXXXXXXXXX 982
+ T LFYRA+L+ ++ I + + VG++ +KCS+F++YV R+
Sbjct: 467 QGLPTESLFYRAVLQDIIKDCYGITKCD-RHVGKIYSKCSSFLDYVRRSLKKLGLDESKL 525
Query: 983 -XXXXTRLFNSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQQ 1030
+ ++ L+ + LK LAP IE LI+LDR+ YL+EQ+
Sbjct: 526 PEKIIMNYYEKYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQE 574
Score = 177 (67.4 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 35/98 (35%), Positives = 60/98 (61%)
Query: 634 DLGSTITVDELFSKLQARKCGLVVESAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHI 693
+LG ++L L+ + + E+ K + M+ KKS+EVQ MS++++++ + +
Sbjct: 119 NLGICTPFEQLLVALRGNQNQRIGENQKAVEFMNMKKSHEVQAMSELISSIADYYGIKQV 178
Query: 694 IDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVR 731
IDLG G+GYLS+ L+L++G K +D + NTHGA R
Sbjct: 179 IDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEER 216
Score = 144 (55.7 bits), Expect = 4.8e-37, Sum P(2) = 4.8e-37
Identities = 41/168 (24%), Positives = 82/168 (48%)
Query: 485 IKNTIDEMIEFITPNIACVNTHTVHFMVEKLWETTI---PKAILSQVNNSPSFDS----- 536
++ + +++F+ ++ N HTV F E +WE + P+ +L+ + S S
Sbjct: 16 LRAKLQGLLQFLRDALSISNAHTVDFYTESVWEELVDLPPETVLAALRKSASETEALPSE 75
Query: 537 ---LLEEFWKSRQDNH----VETNSELVKFFQAADKFRLTSLMNGESIITVDELFSKLQA 589
L+E W++ + ET+ +LV A + S+ N ++L L+
Sbjct: 76 TRPLVEAEWEAGMTDFPKIFCETSQKLVSVEAFALAAKYYSVQNLGICTPFEQLLVALRG 135
Query: 590 RKCGQVVESAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGS 637
+ ++ E+ K + M+ KKS+EVQ MS++++++ + +IDLGS
Sbjct: 136 NQNQRIGENQKAVEFMNMKKSHEVQAMSELISSIADYYGIKQVIDLGS 183
Score = 93 (37.8 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 1044 TQVDDEEVTRLFDSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQQ 1095
+++ ++ + ++ ++ L+ + LK LAP IE LI+LDR+ YL+EQ+
Sbjct: 523 SKLPEKIIMNYYEKYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQE 574
Score = 39 (18.8 bits), Expect = 4.8e-26, Sum P(2) = 4.8e-26
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 211 ENKQIIDVKMAIEYMSFSAHADAKGIMQLI 240
+N++I + + A+E+M+ + + + +LI
Sbjct: 137 QNQRIGENQKAVEFMNMKKSHEVQAMSELI 166
>GENEDB_PFALCIPARUM|PF14_0364 [details] [associations]
symbol:PF14_0364 "cleavage and polyadenylation
specifity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0006379 "mRNA cleavage"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014187 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 RefSeq:XP_001348538.1 ProteinModelPortal:Q8IL83
PRIDE:Q8IL83 EnsemblProtists:PF14_0364:mRNA GeneID:811946
KEGG:pfa:PF14_0364 EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH
ProtClustDB:CLSZ2457730 Uniprot:Q8IL83
Length = 876
Score = 421 (153.3 bits), Expect = 3.8e-35, Sum P(2) = 3.8e-35
Identities = 120/380 (31%), Positives = 200/380 (52%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF V++ N +YTGDY+ DRH+ A I +LI E TY + D ++ RE FL
Sbjct: 209 MFLVEINNIRFLYTGDYSREIDRHIPIAEIPNIDVHVLICEGTYGIKVHDDRKKREIRFL 268
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWER-MNLQ-APIYFAVGLTEKATNYYK 118
+ ++ GKVL+PVFALGRAQEL ++LE +W++ +LQ PI++ + K+ Y+
Sbjct: 269 NILTSMINNKGKVLLPVFALGRAQELLLILEEHWDKNKHLQNIPIFYISSMATKSLCIYE 328
Query: 119 MFITWTNQKIRKTFVQ-RNMFDFKHIRPFDKS--------FIDNPGPMVVFATPGMLHSG 169
FI + ++K + +N F+FK+++ + KS + DN P V+ A+PGML +G
Sbjct: 329 TFINLCGEFVKKVVNEGKNPFNFKYVK-YAKSLESISSYLYQDN-NPCVIMASPGMLQNG 386
Query: 170 LSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSA 229
+S IF A + + +I+ G+ V+GT+ ++ + + + +K ++ K E +SFSA
Sbjct: 387 ISKNIFNIIASDKKSGVILTGYTVKGTLADELKTEPEFVTINDK-VVKRKCRFEQISFSA 445
Query: 230 HADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFN-LDCFMPANGESCFVQTDM 288
H+D I+ + NV+LVHG+ +++ LK K+ +E L F P + +
Sbjct: 446 HSDFNQTKTFIEKLKCPNVVLVHGDKNELNRLKNKLIEEKQYLSVFTPELLQKLSFHFEQ 505
Query: 289 KISIDVSVNLLKEEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHI 348
S+ +S+ L E K N K+ ++ G+ + K+ I+ + E+G I
Sbjct: 506 NDSL-ISLGKLSEHIKKIN-------KKIKLEGLKMKKEKMIANDEHISVKNEMG---DI 554
Query: 349 VRFTSNVQISDSSPINKTLE 368
N+QISD NK E
Sbjct: 555 NNDEENLQISDKKK-NKVDE 573
Score = 44 (20.5 bits), Expect = 3.8e-35, Sum P(2) = 3.8e-35
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 786 VVSIKDEELVVCKD-KCKQITHFVTPDSDI 814
++ +KD +++ CKD K +I +P +D+
Sbjct: 657 LIIVKDIKIIYCKDDKMIKINWLSSPLNDL 686
>UNIPROTKB|Q8IL83 [details] [associations]
symbol:PF14_0364 "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014187
GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 RefSeq:XP_001348538.1
ProteinModelPortal:Q8IL83 PRIDE:Q8IL83
EnsemblProtists:PF14_0364:mRNA GeneID:811946 KEGG:pfa:PF14_0364
EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH ProtClustDB:CLSZ2457730
Uniprot:Q8IL83
Length = 876
Score = 421 (153.3 bits), Expect = 3.8e-35, Sum P(2) = 3.8e-35
Identities = 120/380 (31%), Positives = 200/380 (52%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF V++ N +YTGDY+ DRH+ A I +LI E TY + D ++ RE FL
Sbjct: 209 MFLVEINNIRFLYTGDYSREIDRHIPIAEIPNIDVHVLICEGTYGIKVHDDRKKREIRFL 268
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWER-MNLQ-APIYFAVGLTEKATNYYK 118
+ ++ GKVL+PVFALGRAQEL ++LE +W++ +LQ PI++ + K+ Y+
Sbjct: 269 NILTSMINNKGKVLLPVFALGRAQELLLILEEHWDKNKHLQNIPIFYISSMATKSLCIYE 328
Query: 119 MFITWTNQKIRKTFVQ-RNMFDFKHIRPFDKS--------FIDNPGPMVVFATPGMLHSG 169
FI + ++K + +N F+FK+++ + KS + DN P V+ A+PGML +G
Sbjct: 329 TFINLCGEFVKKVVNEGKNPFNFKYVK-YAKSLESISSYLYQDN-NPCVIMASPGMLQNG 386
Query: 170 LSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSA 229
+S IF A + + +I+ G+ V+GT+ ++ + + + +K ++ K E +SFSA
Sbjct: 387 ISKNIFNIIASDKKSGVILTGYTVKGTLADELKTEPEFVTINDK-VVKRKCRFEQISFSA 445
Query: 230 HADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFN-LDCFMPANGESCFVQTDM 288
H+D I+ + NV+LVHG+ +++ LK K+ +E L F P + +
Sbjct: 446 HSDFNQTKTFIEKLKCPNVVLVHGDKNELNRLKNKLIEEKQYLSVFTPELLQKLSFHFEQ 505
Query: 289 KISIDVSVNLLKEEAVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEVGISRHI 348
S+ +S+ L E K N K+ ++ G+ + K+ I+ + E+G I
Sbjct: 506 NDSL-ISLGKLSEHIKKIN-------KKIKLEGLKMKKEKMIANDEHISVKNEMG---DI 554
Query: 349 VRFTSNVQISDSSPINKTLE 368
N+QISD NK E
Sbjct: 555 NNDEENLQISDKKK-NKVDE 573
Score = 44 (20.5 bits), Expect = 3.8e-35, Sum P(2) = 3.8e-35
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 786 VVSIKDEELVVCKD-KCKQITHFVTPDSDI 814
++ +KD +++ CKD K +I +P +D+
Sbjct: 657 LIIVKDIKIIYCKDDKMIKINWLSSPLNDL 686
>UNIPROTKB|E9PNS4 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00984775
ProteinModelPortal:E9PNS4 SMR:E9PNS4 Ensembl:ENST00000528879
ArrayExpress:E9PNS4 Bgee:E9PNS4 Uniprot:E9PNS4
Length = 278
Score = 362 (132.5 bits), Expect = 5.5e-32, P = 5.5e-32
Identities = 65/72 (90%), Positives = 71/72 (98%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222
Query: 61 KKVHECVDRGGK 72
KKVHE V+RGGK
Sbjct: 223 KKVHETVERGGK 234
>ASPGD|ASPL0000060573 [details] [associations]
symbol:AN0990 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0006397 GO:GO:0090305 GO:GO:0004519
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACD01000015 RefSeq:XP_658594.1
ProteinModelPortal:Q5BEP0 STRING:Q5BEP0
EnsemblFungi:CADANIAT00001661 GeneID:2876766 KEGG:ani:AN0990.2
OMA:EISFAAH OrthoDB:EOG41ZJK7 Uniprot:Q5BEP0
Length = 884
Score = 251 (93.4 bits), Expect = 9.6e-24, Sum P(2) = 9.6e-24
Identities = 55/138 (39%), Positives = 82/138 (59%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDF 59
MF + + +I++TGDY+ DRHL A + + + D+LITEST+ + + RE
Sbjct: 180 MFLISIAGLNILFTGDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAAL 239
Query: 60 LKKVHECVDRGGKVLIPVFALGRAQELCILLETYWE-RMNLQA-PIYFAVGLTEKATNYY 117
+K + ++RGG+VL+PVFALGRAQEL ++LE YWE LQ PIY+ + Y
Sbjct: 240 MKSITGVLNRGGRVLMPVFALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVY 299
Query: 118 KMFITWTNQKIRKTFVQR 135
+ +I N I++ F QR
Sbjct: 300 QTYIGAMNDNIKRLFRQR 317
Score = 146 (56.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 41/134 (30%), Positives = 66/134 (49%)
Query: 86 LCILLETYWERMNLQA-PIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQR--------- 135
L IL E + LQ PIY+ + Y+ +I N I++ F QR
Sbjct: 267 LLILEEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRLFRQRMAEAEASGD 326
Query: 136 -----NMFDFKHIRPFDK-SFIDNPGPMVVFATPGMLHSGLSLIIFKKWAPVENNMLIMP 189
+DFK++R D+ G V+ A+PGML +G S + ++WAP E N ++M
Sbjct: 327 KSVSAGPWDFKYVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLERWAPNERNGVVMT 386
Query: 190 GFCVQGTIGHKVLS 203
G+ V+GT+ ++L+
Sbjct: 387 GYSVEGTMAKQLLN 400
Score = 113 (44.8 bits), Expect = 9.6e-24, Sum P(2) = 9.6e-24
Identities = 48/189 (25%), Positives = 85/189 (44%)
Query: 211 ENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKI----- 265
E K +I + ++ +SF+AH D I+ V+LVHGE +M+ LK K+
Sbjct: 427 EQKIMIPRRCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNA 486
Query: 266 KQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLKEEAVKYNSEPPN-PLKERQIHGVLV 324
++ + + PAN E + K I V L + + ++E + PL + GVLV
Sbjct: 487 EKTVKVKVYTPANCEEVRIPF-RKDKIAKVVGKLAQTTLPTDNEDGDGPL----MAGVLV 541
Query: 325 IKDSSISLMDVDEACKEVGISRHIVRFTSNVQISDSSP--INKTLELIYDQLLSYLQDKS 382
+SLM D+ + G++ + ++ +S +S I LE + + D+
Sbjct: 542 QNGFDLSLMAPDDLREYAGLATTTITCKQHITLSSASMDLIKWALEGTFGAIEEIGTDED 601
Query: 383 QEYKIQLTE 391
E + Q +E
Sbjct: 602 AEKEDQQSE 610
>TAIR|locus:2172843 [details] [associations]
symbol:CPSF100 "cleavage and polyadenylation specificity
factor 100" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009793 "embryo development ending
in seed dormancy" evidence=NAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006306 "DNA methylation" evidence=RCA] [GO:0006342 "chromatin
silencing" evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0007267 "cell-cell
signaling" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 GO:GO:0009506 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006378 EMBL:AB005244 GO:GO:0003723
GO:GO:0016787 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 EMBL:AF283277 EMBL:AY034982
EMBL:BT004374 IPI:IPI00521104 RefSeq:NP_197776.1 UniGene:At.25191
ProteinModelPortal:Q9LKF9 SMR:Q9LKF9 IntAct:Q9LKF9 STRING:Q9LKF9
PaxDb:Q9LKF9 PRIDE:Q9LKF9 EnsemblPlants:AT5G23880.1 GeneID:832453
KEGG:ath:AT5G23880 TAIR:At5g23880 HOGENOM:HOG000264343
InParanoid:Q9LKF9 OMA:NNPFQFK PhylomeDB:Q9LKF9
ProtClustDB:CLSN2686300 Genevestigator:Q9LKF9 GermOnline:AT5G23880
GO:GO:0035194 Uniprot:Q9LKF9
Length = 739
Score = 282 (104.3 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 64/210 (30%), Positives = 113/210 (53%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYAT-TIRDSKRCRERD 58
++++ + ++Y DYN +RHL + RP +LIT++ +A T + +++ R+++
Sbjct: 159 IWRITKDGEDVIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKE 218
Query: 59 FLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYK 118
FL + + ++ GG VL+PV GR EL ++LE +W + PIYF ++ +Y K
Sbjct: 219 FLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVK 278
Query: 119 MFITWTNQKIRKTF-VQR-NMFDFKHIRPF-DKSFIDN--PGPMVVFATPGMLHSGLSLI 173
F+ W + I K+F R N F +H+ +K+ +DN PGP VV A+ L +G +
Sbjct: 279 SFLEWMSDSISKSFETSRDNAFLLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFARE 338
Query: 174 IFKKWAPVENNMLIMPGFCVQGTIGHKVLS 203
IF +WA N+++ GT+ + S
Sbjct: 339 IFVEWANDPRNLVLFTETGQFGTLARMLQS 368
Score = 76 (31.8 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 21/95 (22%), Positives = 40/95 (42%)
Query: 212 NKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNL 271
N+ I+ V ++ M + +D + I +I + P ++LVH A LK+
Sbjct: 529 NELIVTVSCSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICP 588
Query: 272 DCFMPANGESCFVQTDM-KISIDVSVNLLKEEAVK 305
+ P E+ V +D+ + +S L+ K
Sbjct: 589 HVYAPQIEETVDVTSDLCAYKVQLSEKLMSNVIFK 623
>FB|FBgn0027873 [details] [associations]
symbol:Cpsf100 "Cleavage and polyadenylation specificity
factor 100" species:7227 "Drosophila melanogaster" [GO:0006379
"mRNA cleavage" evidence=ISS;NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=NAS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE014297 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 OMA:NNPFQFK
GO:GO:0006398 EMBL:AF160933 RefSeq:NP_651658.1 RefSeq:NP_733264.1
UniGene:Dm.1362 ProteinModelPortal:Q9V3D6 SMR:Q9V3D6 IntAct:Q9V3D6
STRING:Q9V3D6 PaxDb:Q9V3D6 PRIDE:Q9V3D6 EnsemblMetazoa:FBtr0085357
GeneID:43426 KEGG:dme:Dmel_CG1957 UCSC:CG1957-RA CTD:43426
FlyBase:FBgn0027873 InParanoid:Q8IML7 OrthoDB:EOG4XD261
PhylomeDB:Q9V3D6 GenomeRNAi:43426 NextBio:833860 Bgee:Q9V3D6
GermOnline:CG1957 Uniprot:Q9V3D6
Length = 756
Score = 251 (93.4 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 72/231 (31%), Positives = 112/231 (48%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VKVG + IVY D+N +RHL +D+ RP LLIT++ A + +R R+ +
Sbjct: 163 VKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
+ + V G VLI V GR EL +L+ W+ Y L + N + K
Sbjct: 223 ILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKS 282
Query: 120 FITWTNQKIRKTF--VQRNMFDFKHIRPFDKSFIDN---P-GPMVVFATPGMLHSGLSLI 173
I W + K+ K F + N F FKHI+ S D P GP VV A+ L SG +
Sbjct: 283 QIEWMSDKLTKAFEGARNNPFQFKHIQ-LCHSLADVYKLPAGPKVVLASTPDLESGFTRD 341
Query: 174 IFKKWAPVENNMLIMPGFCVQGTIGHKVLSGV---KKLEFENKQIIDVKMA 221
+F +WA NN +I+ GT+ +++ K++E + ++ +D++ A
Sbjct: 342 LFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGA 392
Score = 90 (36.7 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 19/91 (20%), Positives = 43/91 (47%)
Query: 200 KVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMV 259
++L KL ++ I+V ++ + F +D + +++++ P+ V+++HG A
Sbjct: 525 QLLEKPTKL-ISQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQ 583
Query: 260 FLKEKIKQEFNLDCFMPANGESCFVQTDMKI 290
+ +Q F P GE V +++ I
Sbjct: 584 VVARHCEQNVGARVFTPQKGEIIDVTSEIHI 614
>TAIR|locus:2017928 [details] [associations]
symbol:AT1G16650 "AT1G16650" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR
InterPro:IPR025714 Pfam:PF13679 eggNOG:NOG302129 EMBL:BT033025
IPI:IPI00529420 RefSeq:NP_173110.2 UniGene:At.49887
ProteinModelPortal:B3DNN7 SMR:B3DNN7 PRIDE:B3DNN7
EnsemblPlants:AT1G16650.1 GeneID:838234 KEGG:ath:AT1G16650
TAIR:At1g16650 HOGENOM:HOG000030566 OMA:DLACQSA PhylomeDB:B3DNN7
ProtClustDB:CLSN2680707 Genevestigator:B3DNN7 Uniprot:B3DNN7
Length = 521
Score = 159 (61.0 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 62/179 (34%), Positives = 84/179 (46%)
Query: 769 ASVEHHGKNWKRKS----KAPVVSIKDEELVVCKDKCKQIT--HFVTPDSDIS-SILS-- 819
A ++ H RKS K P V + V+ + K +T H ++D S S L+
Sbjct: 186 ARIKKHFAAQMRKSGSGNKCPDVPMTITCRVLSTEMLKALTDVHLEKDETDSSGSALNEE 245
Query: 820 -QAYPQDS--LHNVC---IMGLHTCGDLSGTALRLFTK-SSLQCLVQVGCCYHLLEEEFI 872
Q+ Q S + C + GLH CGDLS T LR F + ++ LV +GCCY+LL E
Sbjct: 246 GQSRSQSSSDANRSCSLVLAGLHACGDLSVTMLRTFMECEEVKALVSIGCCYNLLSE--- 302
Query: 873 RSPFWKDVDQSLYEHGYGFPLSEHLRSRKFFLGRNVRMSGTQSPERVIDLKQTQTLPLF 931
K + S + GY P+S LRS F LG+N R QS ER L + L F
Sbjct: 303 -----KSSEDSCSKCGY--PMSAGLRSLGFSLGKNARDLACQSAERWSSLGEDAGLQNF 354
Score = 129 (50.5 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 655 LVVESAKVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKK 714
+V S +SQ M+ KK +EV+V+S VV++V S + ++D+G GQGYL+ +L+ Q+
Sbjct: 108 MVPLSTVLSQGMNLKKKHEVEVLSSVVSSVVKSVGAPTVVDVGAGQGYLAQVLSFQYKHS 167
Query: 715 TLSLDYNQVNTHG 727
+++D + + HG
Sbjct: 168 VVAIDSS--SHHG 178
Score = 93 (37.8 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 38/149 (25%), Positives = 66/149 (44%)
Query: 489 IDEMIEFITPNIACVNTHTVHFMVEKLWETTIPKAILSQVNNSPSFDSLLEEFWKSRQDN 548
I +I+F+ P +N H V+F +K WE + + + P L+ QD+
Sbjct: 18 ITAIIDFLKPFSFLINAHVVNFFKDKQWEAVNEEWMSCLKDEKPENILLIPS--GGVQDH 75
Query: 549 HVETNSELVKFFQAADKFRLTSLMNGESIITVDELFSKLQARKCGQVVESAKVSQLMSEK 608
+ L KF L SL + + + + V S +SQ M+ K
Sbjct: 76 WP---ASLKKFVHT-----LRSLSFPREQADLQAILADVD-----MVPLSTVLSQGMNLK 122
Query: 609 KSYEVQVMSQVVAAVTNSCDSSHIIDLGS 637
K +EV+V+S VV++V S + ++D+G+
Sbjct: 123 KKHEVEVLSSVVSSVVKSVGAPTVVDVGA 151
Score = 83 (34.3 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 998 EYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1029
E + Y+ ++ AL PV+E LI+LDR+++L+EQ
Sbjct: 462 ELIGPYWSIRAALGPVLETLILLDRLMFLQEQ 493
Score = 83 (34.3 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 1063 EYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1094
E + Y+ ++ AL PV+E LI+LDR+++L+EQ
Sbjct: 462 ELIGPYWSIRAALGPVLETLILLDRLMFLQEQ 493
>TIGR_CMR|CHY_2049 [details] [associations]
symbol:CHY_2049 "metallo-beta-lactamase family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 RefSeq:YP_360868.1
ProteinModelPortal:Q3AAG6 STRING:Q3AAG6 GeneID:3728507
KEGG:chy:CHY_2049 PATRIC:21277179 HOGENOM:HOG000244774 KO:K07576
OMA:GGRIVHH BioCyc:CHYD246194:GJCN-2048-MONOMER Uniprot:Q3AAG6
Length = 504
Score = 241 (89.9 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 81/303 (26%), Positives = 150/303 (49%)
Query: 36 DLLITESTYATTIRDSKRCRERDFLKKVHECV-DRGGKVLIPVFALGRAQELCILLETYW 94
D+L+ ESTY +R S+ + LK + E V R G ++IP FA+ R Q+L +L
Sbjct: 206 DILVLESTYGDRVR-SEEGDLKTLLKSLIEKVYRRNGNLIIPAFAMERTQDLIYILNDLV 264
Query: 95 ERMNLQAP---IYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRN---MFDFKH--IRPF 146
E N + P +Y L + T +K + + N++ ++ + + F H +
Sbjct: 265 E--NKEVPPIDVYIDSPLAVEITKLFKKYPMFFNEEYKEKLNRGDDPLAFPGLHFSVSQE 322
Query: 147 DKSFIDNPGPMVVFATPGMLHSGLSLIIFKK--WAPVENNMLIMPGFCVQGTIGHKVLSG 204
D ++N ++ + GM +G K W P E+ +L++ G+ Q T+G K+L G
Sbjct: 323 DSVKLNNISRAIIISASGMADAGRIRHHLKHNLWRP-ESAVLLV-GYQAQDTLGRKLLDG 380
Query: 205 VKKLEFENKQIIDVKMAI-EYMSFSAHADAKGIMQLI-QYCE-PKNVLLVHGEASKMVFL 261
K+++ ++I VK + Y SAHAD + ++ I ++ + P + LVHGE + L
Sbjct: 381 AKEVKIMGEEIA-VKAEVYHYDGLSAHADQRELLAFIGRFSQKPAQIYLVHGEDEARLNL 439
Query: 262 KEKIKQEFNLDCFMPANGESCFVQTDM-----KISIDVSVNLLKEEAVKYNSEPPNPLKE 316
K+ I++++ + C++P E+ + ++ ++ ID + LLK K +E L E
Sbjct: 440 KKLIEEKYRIPCYLPRYQETISLLANLPGKSEEVLIDKVITLLK---AKQLTEKARDLVE 496
Query: 317 RQI 319
+ +
Sbjct: 497 KLV 499
>ZFIN|ZDB-GENE-040718-79 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation specific
factor 2" species:7955 "Danio rerio" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-040718-79 GO:GO:0016787
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 HOGENOM:HOG000264343 CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ EMBL:BC076029 IPI:IPI00512505
RefSeq:NP_001002384.1 UniGene:Dr.121547 ProteinModelPortal:Q6DHE5
STRING:Q6DHE5 PRIDE:Q6DHE5 GeneID:436657 KEGG:dre:436657
InParanoid:Q6DHE5 NextBio:20831102 ArrayExpress:Q6DHE5 Bgee:Q6DHE5
Uniprot:Q6DHE5
Length = 790
Score = 219 (82.2 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 68/235 (28%), Positives = 108/235 (45%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + I+Y D+N + HL ++ RP LLIT+S A+ ++ ++ R+ L
Sbjct: 163 VKDGEEEIIYGVDFNHKREIHLNGCSLESLSRPSLLITDSFNASYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VMETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFDKSFIDN---PGPMVVFATPGMLHSGLSLII 174
+ W + K+ + F + N F F+H+ S D P P VV + L SG S +
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLS-LCHSLSDLARVPSPKVVLCSQPDLESGFSREL 341
Query: 175 FKKWAPVENNMLIMPGFCVQGTIGHKVLS--GVKKLEFE-NKQI-IDVKMAIEYM 225
F +W N +I+ GT+ ++ G K++E E K+ ++ + EYM
Sbjct: 342 FIQWCQDAKNSVILTYRTTPGTLARYLIDNPGEKRIELEIRKRCRLEGRELEEYM 396
Score = 77 (32.2 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 214 QIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIK 266
Q +D++ + Y+ + +D I ++I +P+ +++VHG L E K
Sbjct: 528 QTLDIRARVMYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDASQDLAESCK 580
>POMBASE|SPBC1709.15c [details] [associations]
symbol:cft2 "cleavage factor two Cft2/polyadenylation
factor CPSF-73 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006378 "mRNA polyadenylation" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] InterPro:IPR027075 PomBase:SPBC1709.15c
Pfam:PF07521 EMBL:CU329671 GO:GO:0006378 GenomeReviews:CU329671_GR
GO:GO:0005847 GO:GO:0006379 PIR:T39643 RefSeq:NP_595448.1
ProteinModelPortal:O74740 STRING:O74740 EnsemblFungi:SPBC1709.15c.1
GeneID:2539954 KEGG:spo:SPBC1709.15c eggNOG:COG1236 KO:K14402
OMA:ISSIATP OrthoDB:EOG4WWVSN NextBio:20801097 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Uniprot:O74740
Length = 797
Score = 221 (82.9 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 62/195 (31%), Positives = 96/195 (49%)
Query: 8 NQSIVYTGDYNMTPDRHL-GAAWIDKC-------RPDLLITESTYATTIRDSKRCRERDF 59
++S++Y D+N + D+HL GAA RP+ LIT++ + S++ R+ F
Sbjct: 152 SESVLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSIPSRKKRDEAF 211
Query: 60 LKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMN--LQAPIYFAVGLTEKATNYY 117
++ V + +GG VL+PV A R ELC +L+ +W L PI F + K +Y
Sbjct: 212 IESVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQPPLPFPILFLSPTSTKTIDYA 271
Query: 118 KMFITWTNQKIRKTF-VQRNMFDFKHIRPF-DKSFIDN--PGPMVVFATPGMLHSGLSLI 173
K I W I + F + N+ +F++I D S I + PGP V+ AT L G S
Sbjct: 272 KSMIEWMGDNIVRDFGINENLLEFRNINTITDFSQISHIGPGPKVILATALTLECGFSQR 331
Query: 174 IFKKWAPVENNMLIM 188
I +N LI+
Sbjct: 332 ILLDLMSENSNDLIL 346
Score = 73 (30.8 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 18/92 (19%), Positives = 43/92 (46%)
Query: 212 NKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQ--EF 269
+++ I V ++++ D + + +I P+ ++L+H + +K+ F
Sbjct: 562 DEKTIRVSCQVQFIDIEGLHDGRSLKTIIPQVNPRRLVLIHASTEEKEDMKKTCASLSAF 621
Query: 270 NLDCFMPANGESCFVQTDMK-ISIDVSVNLLK 300
D ++P GE V D+ S+ ++ +L+K
Sbjct: 622 TKDVYIPNYGEIINVSIDVNAFSLKLADDLIK 653
>UNIPROTKB|Q10568 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9913 "Bos taurus" [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
EMBL:X75931 IPI:IPI00688446 PIR:A56351 RefSeq:NP_787002.1
UniGene:Bt.4077 ProteinModelPortal:Q10568 STRING:Q10568
PRIDE:Q10568 Ensembl:ENSBTAT00000013500 GeneID:327689
KEGG:bta:327689 CTD:53981 HOVERGEN:HBG051106 InParanoid:Q10568
OrthoDB:EOG4MCWZQ NextBio:20810154 GO:GO:0006398 Uniprot:Q10568
Length = 782
Score = 215 (80.7 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 65/234 (27%), Positives = 103/234 (44%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W + K+ + F + N F F+H+ P P VV A+ L G S +F
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLSG----VKKLEFENKQIIDVKMAIEYM 225
+W N +I+ GT+ ++ V ++E + ++ K EY+
Sbjct: 343 IQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYL 396
Score = 77 (32.2 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 202 LSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHG--EASK 257
LS V + I++K + Y+ + +D I ++I +P+ +++VHG EAS+
Sbjct: 515 LSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQ 572
>UNIPROTKB|E2R496 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981 GO:GO:0006398
EMBL:AAEX03005582 RefSeq:XP_537353.2 ProteinModelPortal:E2R496
Ensembl:ENSCAFT00000017381 GeneID:480230 KEGG:cfa:480230
NextBio:20855279 Uniprot:E2R496
Length = 782
Score = 214 (80.4 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 64/234 (27%), Positives = 103/234 (44%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W + K+ + F + N F F+H+ P P VV A+ L G S +F
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLSG----VKKLEFENKQIIDVKMAIEYM 225
+W N +I+ GT+ ++ + ++E + ++ K EY+
Sbjct: 343 IQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYL 396
Score = 77 (32.2 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 202 LSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHG--EASK 257
LS V + I++K + Y+ + +D I ++I +P+ +++VHG EAS+
Sbjct: 515 LSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQ 572
>UNIPROTKB|Q9P2I0 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9606 "Homo sapiens" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CH471061 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0016787
GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0005847
GO:GO:0006369 eggNOG:COG1236 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Reactome:REACT_78
HOGENOM:HOG000264343 OMA:NNPFQFK CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ GO:GO:0006398 EMBL:AK001627 EMBL:BC070095
EMBL:AB037788 EMBL:AL442079 IPI:IPI00419531 RefSeq:NP_059133.1
UniGene:Hs.657632 UniGene:Hs.736541 ProteinModelPortal:Q9P2I0
SMR:Q9P2I0 DIP:DIP-42500N IntAct:Q9P2I0 MINT:MINT-1697677
STRING:Q9P2I0 PhosphoSite:Q9P2I0 DMDM:51338827 PaxDb:Q9P2I0
PeptideAtlas:Q9P2I0 PRIDE:Q9P2I0 Ensembl:ENST00000298875
GeneID:53981 KEGG:hsa:53981 UCSC:uc001yah.2 GeneCards:GC14P092588
HGNC:HGNC:2325 HPA:HPA024238 MIM:606028 neXtProt:NX_Q9P2I0
PharmGKB:PA26842 InParanoid:Q9P2I0 PhylomeDB:Q9P2I0 ChiTaRS:CPSF2
GenomeRNAi:53981 NextBio:56268 ArrayExpress:Q9P2I0 Bgee:Q9P2I0
CleanEx:HS_CPSF2 Genevestigator:Q9P2I0 GermOnline:ENSG00000165934
Uniprot:Q9P2I0
Length = 782
Score = 214 (80.4 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 64/234 (27%), Positives = 103/234 (44%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W + K+ + F + N F F+H+ P P VV A+ L G S +F
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLSG----VKKLEFENKQIIDVKMAIEYM 225
+W N +I+ GT+ ++ + ++E + ++ K EY+
Sbjct: 343 IQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYL 396
Score = 77 (32.2 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 202 LSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHG--EASK 257
LS V + I++K + Y+ + +D I ++I +P+ +++VHG EAS+
Sbjct: 515 LSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQ 572
>MGI|MGI:1861601 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor
2" species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 MGI:MGI:1861601
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
CTD:53981 HOVERGEN:HBG051106 OrthoDB:EOG4MCWZQ GO:GO:0006398
EMBL:AF012822 EMBL:BC013628 EMBL:BC007163 IPI:IPI00314302
RefSeq:NP_058552.1 UniGene:Mm.716 ProteinModelPortal:O35218
SMR:O35218 STRING:O35218 PhosphoSite:O35218 PaxDb:O35218
PRIDE:O35218 Ensembl:ENSMUST00000047357 GeneID:51786 KEGG:mmu:51786
UCSC:uc007otx.2 InParanoid:O35218 NextBio:308008 Bgee:O35218
CleanEx:MM_CPSF2 Genevestigator:O35218
GermOnline:ENSMUSG00000041781 Uniprot:O35218
Length = 782
Score = 214 (80.4 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 65/234 (27%), Positives = 103/234 (44%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W + K+ + F + N F F+H+ P P VV A+ L G S +F
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLSG----VKKLEFENKQIIDVKMAIEYM 225
+W N +I+ GT+ ++ V ++E + ++ K EY+
Sbjct: 343 IQWCQDPKNSIILTYRTTPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEYV 396
Score = 75 (31.5 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 216 IDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHG--EASK 257
I++K + Y+ + +D I ++I +P+ +++VHG EAS+
Sbjct: 529 IEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQ 572
>RGD|1309687 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor 2,
100kDa" species:10116 "Rattus norvegicus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA;ISO] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006398 "histone mRNA
3'-end processing" evidence=IEA;ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 RGD:1309687 GO:GO:0016787
EMBL:CH473982 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981
OrthoDB:EOG4MCWZQ GO:GO:0006398 IPI:IPI00189534
RefSeq:NP_001100223.1 UniGene:Rn.8038 Ensembl:ENSRNOT00000008612
GeneID:299256 KEGG:rno:299256 UCSC:RGD:1309687 NextBio:645098
Uniprot:D3Z9E6
Length = 782
Score = 214 (80.4 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 65/234 (27%), Positives = 103/234 (44%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W + K+ + F + N F F+H+ P P VV A+ L G S +F
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLSG----VKKLEFENKQIIDVKMAIEYM 225
+W N +I+ GT+ ++ V ++E + ++ K EY+
Sbjct: 343 IQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYV 396
Score = 75 (31.5 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 216 IDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHG--EASK 257
I++K + Y+ + +D I ++I +P+ +++VHG EAS+
Sbjct: 529 IEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQ 572
>UNIPROTKB|E9PI75 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI01011963
ProteinModelPortal:E9PI75 SMR:E9PI75 Ensembl:ENST00000527719
ArrayExpress:E9PI75 Bgee:E9PI75 Uniprot:E9PI75
Length = 209
Score = 209 (78.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 36/41 (87%), Positives = 41/41 (100%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITE 41
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLITE
Sbjct: 169 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 209
>UNIPROTKB|F1NMN0 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK GO:GO:0006398
EMBL:AADN02003653 IPI:IPI00651282 Ensembl:ENSGALT00000017538
Uniprot:F1NMN0
Length = 782
Score = 214 (80.4 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 67/235 (28%), Positives = 104/235 (44%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFDKSFIDN---PGPMVVFATPGMLHSGLSLII 174
+ W + K+ + F + N F F+H+ S D P P VV A+ L G S +
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLS-LCHSLSDLARVPSPKVVLASQPDLECGFSRDL 341
Query: 175 FKKWAPVENNMLIMPGFCVQGTIGHKVLSG----VKKLEFENKQIIDVKMAIEYM 225
F +W N +I+ GT+ ++ V +E + ++ K EY+
Sbjct: 342 FIQWCQDSKNSIILTYRTTPGTLARFLIDNPSEKVIDIELRRRVKLEGKELEEYL 396
Score = 71 (30.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 216 IDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHG--EASK 257
+++K + Y+ + +D I ++I +P+ +++VHG EAS+
Sbjct: 529 MEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQ 572
>UNIPROTKB|E9PIG1 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00981641
ProteinModelPortal:E9PIG1 SMR:E9PIG1 Ensembl:ENST00000530031
ArrayExpress:E9PIG1 Bgee:E9PIG1 Uniprot:E9PIG1
Length = 249
Score = 204 (76.9 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 35/40 (87%), Positives = 40/40 (100%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLIT 40
MFQ+KVG++S+VYTGDYNMTPDRHLGAAWIDKCRP+LLIT
Sbjct: 210 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLIT 249
>UNIPROTKB|Q9W799 [details] [associations]
symbol:cpsf2 "Cleavage and polyadenylation specificity
factor subunit 2" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005737 GO:GO:0006397
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
CTD:53981 HOVERGEN:HBG051106 EMBL:AF139986 RefSeq:NP_001081123.1
UniGene:Xl.3876 ProteinModelPortal:Q9W799 GeneID:394394
KEGG:xla:394394 Xenbase:XB-GENE-950598 Uniprot:Q9W799
Length = 783
Score = 212 (79.7 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 64/226 (28%), Positives = 104/226 (46%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFDKSFIDN---PGPMVVFATPGMLHSGLSLII 174
+ W + K+ + F + N F F+H+ + D P P VV A+ L G S +
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLT-LCHGYSDLARVPSPKVVLASQPDLECGFSREL 341
Query: 175 FKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKM 220
F +W N +I+ GT+ ++ + +++IID+++
Sbjct: 342 FIQWCQDPKNSVILTYRTTPGTLARFLI------DHPSERIIDIEL 381
Score = 70 (29.7 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 202 LSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHG 253
LS V + +++K + Y+ + +D I ++I +P+ +++VHG
Sbjct: 515 LSDVPTKCVSTTESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHG 566
Score = 43 (20.2 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 606 SEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGSTITVDELFSKLQARKCGLVVESAKVSQL 665
SE Y+V++ +V+++ C + +D SK+ G+++E +L
Sbjct: 601 SETHIYQVRLKDSLVSSL-KFCKAKDTELAWIDGVLDMRVSKVDT---GVILEER---EL 653
Query: 666 MSEKKSYEVQVMSQVVAAVT 685
E + E+QV +QV+ A T
Sbjct: 654 KDEGEDMEMQVDTQVMDAST 673
>UNIPROTKB|Q9KV92 [details] [associations]
symbol:VC_0264 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K07576 OMA:CHIDHVG PIR:F82345 RefSeq:NP_229920.1
ProteinModelPortal:Q9KV92 DNASU:2614470 GeneID:2614470
KEGG:vch:VC0264 PATRIC:20079570 ProtClustDB:CLSK2517501
Uniprot:Q9KV92
Length = 455
Score = 216 (81.1 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 67/246 (27%), Positives = 114/246 (46%)
Query: 34 RPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFALGRAQELCILLET- 92
R D L E+TY + + R + + + GG +LIP F++GR QEL +E
Sbjct: 202 RADYLFIETTYGDKQHEDVQSRGQRLRAMIERSLTDGGAILIPAFSVGRTQELLFDIEQL 261
Query: 93 -YWERMNLQAPIYFAVGLTEKATNYYKMFIT-WTNQKIRKTFVQRNMFDFKHI------R 144
+ ++++ PI + ++ T Y+ F W + + + R+ F+ R
Sbjct: 262 IFSQQIDANLPIILDSPMAQRVTRSYRRFKQLWGREAKARLQMHRHPLAFEQCITVEDHR 321
Query: 145 PFDK--SFIDNPGPM-VVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKV 201
++ + + + G +V A GM G + K P + LI+ GF +GT+G +
Sbjct: 322 THERLVNRLASTGEAAIVVAASGMCQGGRIMDYLKALLPDKRTDLILAGFQAEGTLGRSI 381
Query: 202 LSGVKKLEFENKQIIDVKMAIEYMS-FSAHADAKGIMQLIQYC--EPKNVLLVHGEA-SK 257
SG + E ++ +V I MS +SAHAD +++ I +PK V L+HGEA +K
Sbjct: 382 QSGQPSVWIEGTEV-EVNAHIHTMSGYSAHADKADLLRFITGIPEKPKQVHLIHGEAPAK 440
Query: 258 MVFLKE 263
F E
Sbjct: 441 QAFAAE 446
>TIGR_CMR|VC_0264 [details] [associations]
symbol:VC_0264 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K07576 OMA:CHIDHVG
PIR:F82345 RefSeq:NP_229920.1 ProteinModelPortal:Q9KV92
DNASU:2614470 GeneID:2614470 KEGG:vch:VC0264 PATRIC:20079570
ProtClustDB:CLSK2517501 Uniprot:Q9KV92
Length = 455
Score = 216 (81.1 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 67/246 (27%), Positives = 114/246 (46%)
Query: 34 RPDLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFALGRAQELCILLET- 92
R D L E+TY + + R + + + GG +LIP F++GR QEL +E
Sbjct: 202 RADYLFIETTYGDKQHEDVQSRGQRLRAMIERSLTDGGAILIPAFSVGRTQELLFDIEQL 261
Query: 93 -YWERMNLQAPIYFAVGLTEKATNYYKMFIT-WTNQKIRKTFVQRNMFDFKHI------R 144
+ ++++ PI + ++ T Y+ F W + + + R+ F+ R
Sbjct: 262 IFSQQIDANLPIILDSPMAQRVTRSYRRFKQLWGREAKARLQMHRHPLAFEQCITVEDHR 321
Query: 145 PFDK--SFIDNPGPM-VVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKV 201
++ + + + G +V A GM G + K P + LI+ GF +GT+G +
Sbjct: 322 THERLVNRLASTGEAAIVVAASGMCQGGRIMDYLKALLPDKRTDLILAGFQAEGTLGRSI 381
Query: 202 LSGVKKLEFENKQIIDVKMAIEYMS-FSAHADAKGIMQLIQYC--EPKNVLLVHGEA-SK 257
SG + E ++ +V I MS +SAHAD +++ I +PK V L+HGEA +K
Sbjct: 382 QSGQPSVWIEGTEV-EVNAHIHTMSGYSAHADKADLLRFITGIPEKPKQVHLIHGEAPAK 440
Query: 258 MVFLKE 263
F E
Sbjct: 441 QAFAAE 446
>UNIPROTKB|F1SD85 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
InterPro:IPR022712 PANTHER:PTHR11203:SF5 Pfam:PF10996 SMART:SM01027
GeneTree:ENSGT00700000104551 EMBL:CU468363
Ensembl:ENSSSCT00000002717 OMA:GANDESP Uniprot:F1SD85
Length = 385
Score = 208 (78.3 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 60/202 (29%), Positives = 90/202 (44%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 62
VK G + IVY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 63 VHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKM 119
V E + G VLI V GR EL LL+ W + +Y L + N + K
Sbjct: 223 VLETLRGDGSVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 120 FITWTNQKIRKTFVQR--NMFDFKHIRPFD--KSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W + K+ + F + N F F+H+ P P VV A+ L G S +F
Sbjct: 283 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTI 197
+W N +I+ GT+
Sbjct: 343 IQWCQDPKNSIILTYRTTPGTL 364
>DICTYBASE|DDB_G0277177 [details] [associations]
symbol:DDB_G0277177 "UPF0431 protein C1orf66"
species:44689 "Dictyostelium discoideum" [GO:0005615 "extracellular
space" evidence=IDA] dictyBase:DDB_G0277177 GO:GO:0005615
EMBL:AAFI02000019 InterPro:IPR025714 Pfam:PF13679
RefSeq:XP_642706.1 EnsemblProtists:DDB0169088 GeneID:8620898
KEGG:ddi:DDB_G0277177 eggNOG:NOG302129 InParanoid:Q86K81
OMA:HHITERE ProtClustDB:CLSZ2497245 Uniprot:Q86K81
Length = 532
Score = 166 (63.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 52/210 (24%), Positives = 100/210 (47%)
Query: 666 MSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNT 725
MSEKK +E+ MS+ V + + + I+D+G G+ YL+ IL Q ++D ++
Sbjct: 138 MSEKKIHEILRMSEFVNMIAKQLNPNEIVDIGAGEAYLTQILNHQFNHSMTAIDCSESFI 197
Query: 726 HGAAVRXXXXXXXXXXXXGPFQ----SYAGVINKKLWMRTQNRQTSHASVEHHGKNWKRK 781
GA R Q S +IN KL + N + + ++ K ++K
Sbjct: 198 EGAIKRQSLIENQRIKKELKQQKETTSTTEIINNKL--KLNNIENNLNEIKKI-KEIEKK 254
Query: 782 SKAPVVSIKDEELVVCKDKCKQITHFVTPDSDISSILSQAYPQDSLHNVCIMGLHTCGDL 841
+++K + V I+ + D D +IL++ + ++ ++GLHTCG L
Sbjct: 255 EIMNKLNLKSTNMCVTT-----ISTDMKND-DFLNILNRNDSTKNYESIMLIGLHTCGIL 308
Query: 842 SGTALRLFTK-SSLQCLVQVGCCYHLLEEE 870
T ++ + + S++ ++ VGCCY+ ++ +
Sbjct: 309 PPTMIKNYLQCSNIDSIIDVGCCYYKIDTD 338
Score = 85 (35.0 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 1023 VLYLREQQKPQIISNLFLSLLTQVDDEEVTRLFDSHQREYEYLQIYYFL--KTALAPVIE 1080
++ ++ QQ Q ++ L + + F+ ++ + QI FL ++ LAPV+E
Sbjct: 432 LIRMKRQQNEQ---SIHLDFKLPETCQPIISYFEQQNQKQQEKQITTFLLLRSLLAPVLE 488
Query: 1081 ALIVLDRVLYLREQQKPQSQF 1101
++IVLDR LYL + F
Sbjct: 489 SIIVLDRFLYLNQFSSTTQSF 509
Score = 83 (34.3 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 991 NSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLRE 1028
N Q+E + + + L++ LAPV+E++IVLDR LYL +
Sbjct: 465 NQKQQEKQ-ITTFLLLRSLLAPVLESIIVLDRFLYLNQ 501
>TIGR_CMR|CPS_2623 [details] [associations]
symbol:CPS_2623 "metallo-beta-lactamase family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000244774 KO:K07576 RefSeq:YP_269337.1
ProteinModelPortal:Q481D2 STRING:Q481D2 GeneID:3521490
KEGG:cps:CPS_2623 PATRIC:21468305 OMA:HGPMVII
ProtClustDB:CLSK2524370 BioCyc:CPSY167879:GI48-2685-MONOMER
Uniprot:Q481D2
Length = 451
Score = 194 (73.4 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 70/278 (25%), Positives = 124/278 (44%)
Query: 4 VKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRP--DLLITESTYATTIRDSKRCRERDFLK 61
+K + + ++GD PD + + K P DLL+ ESTY + D + E+ +
Sbjct: 169 LKADGKRVGFSGDVGR-PDDII--MYPPKPLPPVDLLLLESTYGNRLHDKEDAFEQ-LAE 224
Query: 62 KVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNL-QAPIYFAVGLTEKATNYYKMF 120
V+ +GG +LIP FA+GR + + +L + ++ + + P+Y + N Y
Sbjct: 225 IVNSTAKKGGALLIPSFAVGRTEAVQHMLASLMKKELIPKLPVYLDSPMAINVFNIYCEH 284
Query: 121 ITWTNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSGLSLIIFKKWAP 180
+ N+ F K+ + P ++ A GM G L K+
Sbjct: 285 FDLNRLSNEECLEMCNVATFTRTVDESKALSELIMPHIIIAGSGMATGGRILHHLKRLLG 344
Query: 181 VENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMS-FSAHADAKGIMQL 239
++ G+ GT G K+L+G ++ K + VK +E ++ S H D + I Q
Sbjct: 345 DYRTTVLFTGYLSGGTRGAKMLAGKDNVKIHGKWL-PVKARVEVLNGLSGHGDYEDITQW 403
Query: 240 IQYCE--PKN-VLLVHGEASKMVFLKEKIKQ--EFNLD 272
+Q + PK VLLVHGE +++ + Q +F++D
Sbjct: 404 LQISKLHPKTKVLLVHGEPEASESMRDHLMQHTQFDVD 441
>WB|WBGene00009123 [details] [associations]
symbol:F25H2.12b species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0055120
"striated muscle dense body" evidence=IDA] GO:GO:0009792
InterPro:IPR025714 Pfam:PF13679 GeneTree:ENSGT00530000063745
EMBL:Z79754 GeneID:172945 KEGG:cel:CELE_F25H2.12 UCSC:F25H2.12b
CTD:172945 HOGENOM:HOG000016634 NextBio:877629 PIR:T21353
RefSeq:NP_492768.1 ProteinModelPortal:Q93574 SMR:Q93574
EnsemblMetazoa:F25H2.12a.1 EnsemblMetazoa:F25H2.12a.2
WormBase:F25H2.12a InParanoid:Q93574 OMA:ILVGLHC
ArrayExpress:Q93574 Uniprot:Q93574
Length = 478
Score = 171 (65.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 69/241 (28%), Positives = 112/241 (46%)
Query: 805 THFVTPDSDISSILSQAYPQDSLHNVCIMGLHTCGDLSGTALRLFTKSSL-QCLVQVGCC 863
T+FVT D L+ ++++ ++GLH CGD S T L++F KS + LV GCC
Sbjct: 222 TNFVTED------LALKIDDFAVNSAILVGLHCCGDFSSTILKVFQKSEKSKALVLFGCC 275
Query: 864 YHLLEE--EFIRSPFWKDVDQSLYEH-GYG----FPLSEHLRSRKF-FLGRNVRMSGTQS 915
YH + F+R P + ++ + E+ +G FPLS+ + + +L R ++
Sbjct: 276 YHKEFQCFHFLR-PENNENEREISENTSFGKSTVFPLSKKWENVEIDYLLREAACHNNEN 334
Query: 916 PERVIDLKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLATKC----SNFVEYVHRA 971
E LKQ L + R+ LEK++ K++ E+ + +G + KC + F EY+ +A
Sbjct: 335 LEERF-LKQKIDLSRYARSYLEKWIW-KVSELPED-RNIGMCSVKCIENQTTFEEYIRKA 391
Query: 972 XXXXXXXXXXXXXXXTRL--FNSHQREYEYLQIYYF--LKTALAPVIEALIVLDRVLYLR 1027
++H Q F L+ AP IE+ I+ DRV LR
Sbjct: 392 MANRGNHLLDKVLQIIPQSELSAHVSSLRSSQFDSFEVLRCMFAPAIESAIIDDRVELLR 451
Query: 1028 E 1028
E
Sbjct: 452 E 452
Score = 72 (30.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 662 VSQLMSEKKSYE----VQVMSQVVAAVTNSCDS-SHIIDLGGGQGYLSTILALQHGKKTL 716
V + + KK +E V+++SQ+ +S D ++D+G G G+LS ++++ + +
Sbjct: 120 VRKRIKAKKQHEIDRIVELISQIQIFQKDSADPIDSLVDIGAGIGHLSRMISIHNNISVM 179
Query: 717 SLDYNQVNTHGA 728
+++ NQ T A
Sbjct: 180 AVEGNQQFTLAA 191
>DICTYBASE|DDB_G0270392 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation
specificity factor 100 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA;ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IEA;ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISS]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0270392 Pfam:PF07521 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006378 GO:GO:0003723 GO:GO:0016787
GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
OMA:NNPFQFK RefSeq:XP_646760.1 ProteinModelPortal:Q55BS1
STRING:Q55BS1 EnsemblProtists:DDB0233700 GeneID:8617733
KEGG:ddi:DDB_G0270392 ProtClustDB:CLSZ2431463 Uniprot:Q55BS1
Length = 784
Score = 166 (63.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 55/214 (25%), Positives = 95/214 (44%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWI--DKCRPDLLITESTYAT-TIRDSKRC-RE 56
++++ G SIVY DYN + HL + + D +P LLIT+S T+ K R+
Sbjct: 161 VWKITKGTYSIVYAIDYNHRNEGHLDSLQLTSDILKPSLLITDSKGVDKTLAFKKTITRD 220
Query: 57 RDFLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTE---KA 113
+ ++++ + GG VLIPV GR EL + +E YW + N +Y V L
Sbjct: 221 QSLFEQINRNLRDGGNVLIPVDTAGRVLELLLCIENYWSK-NKSLALYSVVFLGRFSFSV 279
Query: 114 TNYYKMFITWTNQKIRKTFVQR--NMFDFKHIRPFD--KSFIDNPGPMVVFATPGM-LHS 168
+ + + + + F Q N F FKHI+ + + P V T L +
Sbjct: 280 CQFARSQLEFMSSTASVKFEQNIENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLET 339
Query: 169 GLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVL 202
G S +F +W +++ + ++ K++
Sbjct: 340 GFSRELFIQWCSDPKTLILFTQKIPKDSLADKLI 373
Score = 72 (30.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 26/125 (20%), Positives = 59/125 (47%)
Query: 216 IDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLD-CF 274
+ + I+ + + +D + I +IQ P ++L+ G + ++ +K+ +
Sbjct: 551 LPINCKIQTIDYEGCSDGRSIKAIIQQIAPTKLVLIRGSEQQSQSIENYVKENIRTKGIY 610
Query: 275 MPANGESCFVQTDMKISIDVSVNLLKEEAVKYNSEPPNPLKERQ---IHGVLVIKD-SSI 330
+P+ GE Q D+ +V LLK+ V N+ + + + + I G + I D S++
Sbjct: 611 IPSIGE----QLDLTSDTNVYELLLKDSLV--NTLKTSKILDYEVSYIQGKVDILDGSNV 664
Query: 331 SLMDV 335
++D+
Sbjct: 665 PVLDL 669
Score = 51 (23.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 25/131 (19%), Positives = 51/131 (38%)
Query: 372 DQLLSYLQDKSQEYKIQLTEXXXXXXXXXXXXERIDDKNKRVFVTWPNQDEEVGKIVLHV 431
D+LL Y +++++ + + E ER++++ + + NQD+ + L
Sbjct: 399 DELLQYEMEQAKQREEKRLEQLRKEQEEREERERLEEEEREQLLNATNQDQLQQLLQLQQ 458
Query: 432 LKSMSNTQGQPFEFY-PYTDTVFVLSSSRYV-QGTYYLHTYLTSVTK---HQKETMELIK 486
K P+ + F L S + Q + Y K + +E +LI
Sbjct: 459 QKERGIIDDSMVHMKNPFENDRFDLLDSEFKKQSMITMFPYFEKHLKWGEYGEEDDDLIL 518
Query: 487 NTIDEMIEFIT 497
D+ +E +T
Sbjct: 519 RNQDKKVEEVT 529
Score = 39 (18.8 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 591 KCGQVVESAKVSQLMSEKKSYEVQVMSQ 618
KC ++V+ ++V E YE++ Q
Sbjct: 384 KCIEIVQGSRVPLTGDELLQYEMEQAKQ 411
>WB|WBGene00017313 [details] [associations]
symbol:cpsf-2 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 167 (63.8 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 52/208 (25%), Positives = 92/208 (44%)
Query: 5 KVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKKV 63
+V + IVY D+N +RHL D RP LLIT + + + + ++ R+ + K+
Sbjct: 163 RVTGEDIVYCVDFNHKKERHLNGCSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKI 222
Query: 64 HECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKMF 120
V + G +I + GR EL LL+ W + Y V ++ A++ + K
Sbjct: 223 LRTVRQKGDCMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQ 282
Query: 121 ITWTNQKIRK---TFVQRNMFDFKHIR--PFDKSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W N+K+ K + + N F KH+ + + P VV + + SG S +F
Sbjct: 283 LEWMNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLS 203
W N +I+ T+ K+++
Sbjct: 343 LDWCSDPRNGVILTARPASFTLAAKLVN 370
Score = 70 (29.7 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 206 KKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHG 253
K +EF+N+ ++V IE++ + +D + +L+ P+ +++VHG
Sbjct: 555 KCVEFKNR--VEVSCRIEFIEYEGISDGESTKKLLAGLLPRQIIVVHG 600
>UNIPROTKB|O17403 [details] [associations]
symbol:cpsf-2 "Probable cleavage and polyadenylation
specificity factor subunit 2" species:6239 "Caenorhabditis elegans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 167 (63.8 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 52/208 (25%), Positives = 92/208 (44%)
Query: 5 KVGNQSIVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKKV 63
+V + IVY D+N +RHL D RP LLIT + + + + ++ R+ + K+
Sbjct: 163 RVTGEDIVYCVDFNHKKERHLNGCSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKI 222
Query: 64 HECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATN---YYKMF 120
V + G +I + GR EL LL+ W + Y V ++ A++ + K
Sbjct: 223 LRTVRQKGDCMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQ 282
Query: 121 ITWTNQKIRK---TFVQRNMFDFKHIR--PFDKSFIDNPGPMVVFATPGMLHSGLSLIIF 175
+ W N+K+ K + + N F KH+ + + P VV + + SG S +F
Sbjct: 283 LEWMNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELF 342
Query: 176 KKWAPVENNMLIMPGFCVQGTIGHKVLS 203
W N +I+ T+ K+++
Sbjct: 343 LDWCSDPRNGVILTARPASFTLAAKLVN 370
Score = 70 (29.7 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 206 KKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHG 253
K +EF+N+ ++V IE++ + +D + +L+ P+ +++VHG
Sbjct: 555 KCVEFKNR--VEVSCRIEFIEYEGISDGESTKKLLAGLLPRQIIVVHG 600
>ZFIN|ZDB-GENE-050522-515 [details] [associations]
symbol:rrnad1 "ribosomal RNA adenine dimethylase
domain containing 1" species:7955 "Danio rerio" [GO:0000154 "rRNA
modification" evidence=IEA] [GO:0000179 "rRNA
(adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA]
[GO:0008649 "rRNA methyltransferase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR020596
PROSITE:PS01131 ZFIN:ZDB-GENE-050522-515 InterPro:IPR025714
Pfam:PF13679 GO:GO:0000179 GO:GO:0031167
GeneTree:ENSGT00530000063745 EMBL:AL954306 IPI:IPI00995994
Ensembl:ENSDART00000050535 Bgee:F1QDT0 Uniprot:F1QDT0
Length = 564
Score = 160 (61.4 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 55/210 (26%), Positives = 91/210 (43%)
Query: 832 IMGLHTCGDLSGTALRLFTKSS-LQCLVQVGCCYHLLEEE-------FIRSPFWKDVDQS 883
+ GLH CGDLS T LR FT + + V CCY + + + PF+ D+ +
Sbjct: 327 LTGLHACGDLSATLLRHFTNCPHVNVITSVACCYMKISTKENPNPPGVFQPPFFSDITTA 386
Query: 884 LYEHGYGFPLSEHLRSRKFF-LGRNVRMSGTQSPERVID-LKQTQTL--PLFYRALLEKY 939
+ +G+P+S +R L R + E + L++ TL YRA+LE
Sbjct: 387 DFCSEFGYPMSNWVRGLTGHQLSYKAREGACHAIEEYLQRLREESTLLRTHCYRAILENI 446
Query: 940 LRSKITINDEEPKVVGRLATKCSNFVEYVHRAXXXXXXXXXXXXXXXTRLFNSHQREYEY 999
+R+ + P V +F EY A ++ +
Sbjct: 447 IRAHRP-DIRRPGVQTVKKAHMLSFSEYARLALPRVGLPADLPFDPVC--VDAMLAQQGK 503
Query: 1000 LQIYYFLKTALAPVIEALIVLDRVLYLREQ 1029
+ Y+ L LAPV+E L++LDR+++L+E+
Sbjct: 504 VVAYFSLVLLLAPVVETLVLLDRIIFLQER 533
Score = 70 (29.7 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 669 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHG 712
KK +E++ + +V + + + + ++D+G GQG+L+ L+ G
Sbjct: 135 KKQHEIRRLGMLVKELCDQANCNCVVDVGSGQGHLTRFLSFGLG 178
Score = 59 (25.8 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 36/195 (18%), Positives = 80/195 (41%)
Query: 504 NTHTVHFMVEKLWETTIPKAILSQVNN-SPSF--DSLLEEFWKSRQDNHVETNSELVKFF 560
+++ + F E LWET +P + + + +P D LL++ K R+ + V S L+
Sbjct: 30 DSYIIEFFSESLWET-LPVSWQEALGDLTPPMIADLLLDDKIKDRRYSSVWPLS-LLALR 87
Query: 561 QAADKFRLTSLMNGESIITVDELFSKLQARKCGQVVESAKVSQLMSEKKSYEVQVMSQVV 620
AA G + Q+ + + + KK +E++ + +V
Sbjct: 88 TAAHALTFPRTTPGGHQQNAGVAAEEFQSNHSQSSLLGHIFRKHVKPKKQHEIRRLGMLV 147
Query: 621 AAVTNSCDSSHIIDLGSTITVDELFSKLQARKCGLVVESAKVS-QLMSEKKSYEVQVMSQ 679
+ + + + ++D+GS ++ + GL V + L+S ++ Q++ Q
Sbjct: 148 KELCDQANCNCVVDVGSG---QGHLTRFLSFGLGLHVTGIEADPNLVSMATKFDRQLL-Q 203
Query: 680 VVAAVTNSCDSSHII 694
+ S +H++
Sbjct: 204 TLTKENQSSGKAHVL 218
>UNIPROTKB|E2QS81 [details] [associations]
symbol:C1orf66 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0000179 "rRNA
(adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA]
InterPro:IPR020596 PROSITE:PS01131 InterPro:IPR025714 Pfam:PF13679
GO:GO:0000179 GO:GO:0031167 GeneTree:ENSGT00530000063745 CTD:51093
OMA:AHQAQEN EMBL:AAEX03005314 EMBL:AAEX03005313 RefSeq:XP_547529.2
Ensembl:ENSCAFT00000026519 GeneID:490408 KEGG:cfa:490408
NextBio:20863434 Uniprot:E2QS81
Length = 474
Score = 101 (40.6 bits), Expect = 8.4e-10, Sum P(3) = 8.4e-10
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 823 PQDSLHNVCIMGLHTCGDLSGTALRLFTKSSLQCLVQVGCCYHLLEE 869
PQ S + + GLH CGDLS T LR F+ + L VGCCY L +
Sbjct: 246 PQ-SRARLLLTGLHACGDLSVTLLRHFSCPQVVALASVGCCYMKLSD 291
Score = 88 (36.0 bits), Expect = 8.4e-10, Sum P(3) = 8.4e-10
Identities = 29/98 (29%), Positives = 41/98 (41%)
Query: 932 YRALLEKYLRSKITINDEEPKVVGRLATKCSNFVEYVHRAXXXXXXXXXXXXXXXTRLFN 991
YRA LE +R P V G EYV R
Sbjct: 340 YRAALETVIRGAQP-ELRRPGVQGIPRVHELKIEEYVRRGLRRVGLDPQLPLNLAA--LQ 396
Query: 992 SHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1029
+HQ + + ++ L LAP++E LI+LDR+LY++EQ
Sbjct: 397 AHQAQENRVVAFFSLALLLAPLVETLILLDRLLYVQEQ 434
Score = 86 (35.3 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 1057 SHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1094
+HQ + + ++ L LAP++E LI+LDR+LY++EQ
Sbjct: 397 AHQAQENRVVAFFSLALLLAPLVETLILLDRLLYVQEQ 434
Score = 83 (34.3 bits), Expect = 8.4e-10, Sum P(3) = 8.4e-10
Identities = 15/54 (27%), Positives = 34/54 (62%)
Query: 669 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQ 722
KK +E++ + ++V +++ + ++D+G GQG+LS ++L G S++ +Q
Sbjct: 133 KKQHEIRRLGELVKKLSDLTGCTQVVDIGSGQGHLSRFMSLGLGLLVKSIEGDQ 186
Score = 54 (24.1 bits), Expect = 6.7e-07, Sum P(3) = 6.7e-07
Identities = 13/62 (20%), Positives = 34/62 (54%)
Query: 608 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGSTITVDELFSKLQARKCGLVVESAKVSQLMS 667
KK +E++ + ++V +++ + ++D+GS S+ + GL+V+S + Q +
Sbjct: 133 KKQHEIRRLGELVKKLSDLTGCTQVVDIGSG---QGHLSRFMSLGLGLLVKSIEGDQRLV 189
Query: 668 EK 669
++
Sbjct: 190 QR 191
>UNIPROTKB|Q74C32 [details] [associations]
symbol:GSU1843 "RNA exonuclease, beta-lactamase fold
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0004527 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_952893.1
ProteinModelPortal:Q74C32 GeneID:2688625 KEGG:gsu:GSU1843
PATRIC:22026545 OMA:CHIDHVG ProtClustDB:CLSK2516562
BioCyc:GSUL243231:GH27-1786-MONOMER Uniprot:Q74C32
Length = 475
Score = 107 (42.7 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 32/110 (29%), Positives = 52/110 (47%)
Query: 156 PMVVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVK-KLEFENKQ 214
P +V A GM G + K P ++ G+ GT G ++L K K E +
Sbjct: 347 PCIVIAAGGMCAGGRIVNYLKALMPDPRTDILFVGYQAAGTPGREILEAAKQKWETGGRP 406
Query: 215 IIDV-------KMAIEYMS-FSAHADAKGIMQLIQ--YCEPKNVLLVHGE 254
ID+ + A+ +S +SAHAD + +++ ++ PK + LVHGE
Sbjct: 407 SIDLDGGTYPLRAAVHTISGYSAHADQRDLVEFVEGITVPPKTIRLVHGE 456
Score = 96 (38.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 7 GNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHEC 66
G+ +V++GD P L R D+L+ ESTY + + R + +
Sbjct: 179 GDTVVVFSGDLG-APFTPLLPDPKPPERADILVLESTYGDRQHEGREQRRERLCRVIVRA 237
Query: 67 VDRGGKVLIPVFALGRAQELCILLE 91
++ G +L+P F++GR QEL +E
Sbjct: 238 LENRGALLVPAFSIGRTQELLYEIE 262
>TIGR_CMR|GSU_1843 [details] [associations]
symbol:GSU_1843 "metallo-beta-lactamase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0004527
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_952893.1
ProteinModelPortal:Q74C32 GeneID:2688625 KEGG:gsu:GSU1843
PATRIC:22026545 OMA:CHIDHVG ProtClustDB:CLSK2516562
BioCyc:GSUL243231:GH27-1786-MONOMER Uniprot:Q74C32
Length = 475
Score = 107 (42.7 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 32/110 (29%), Positives = 52/110 (47%)
Query: 156 PMVVFATPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVK-KLEFENKQ 214
P +V A GM G + K P ++ G+ GT G ++L K K E +
Sbjct: 347 PCIVIAAGGMCAGGRIVNYLKALMPDPRTDILFVGYQAAGTPGREILEAAKQKWETGGRP 406
Query: 215 IIDV-------KMAIEYMS-FSAHADAKGIMQLIQ--YCEPKNVLLVHGE 254
ID+ + A+ +S +SAHAD + +++ ++ PK + LVHGE
Sbjct: 407 SIDLDGGTYPLRAAVHTISGYSAHADQRDLVEFVEGITVPPKTIRLVHGE 456
Score = 96 (38.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 7 GNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHEC 66
G+ +V++GD P L R D+L+ ESTY + + R + +
Sbjct: 179 GDTVVVFSGDLG-APFTPLLPDPKPPERADILVLESTYGDRQHEGREQRRERLCRVIVRA 237
Query: 67 VDRGGKVLIPVFALGRAQELCILLE 91
++ G +L+P F++GR QEL +E
Sbjct: 238 LENRGALLVPAFSIGRTQELLYEIE 262
>TIGR_CMR|DET_1061 [details] [associations]
symbol:DET_1061 "metallo-beta-lactamase family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS HOGENOM:HOG000244774 KO:K07576
RefSeq:YP_181776.1 ProteinModelPortal:Q3Z7M3 STRING:Q3Z7M3
GeneID:3229629 KEGG:det:DET1061 PATRIC:21609167
ProtClustDB:CLSK2516599 BioCyc:DETH243164:GJNF-1062-MONOMER
Uniprot:Q3Z7M3
Length = 468
Score = 150 (57.9 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 61/244 (25%), Positives = 106/244 (43%)
Query: 36 DLLITESTYATTIRDSKRCRERDFLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWE 95
D ++ ESTY + +++ V GG ++IP FAL R Q+L L +
Sbjct: 210 DYVVIESTYGDRTHQDINEASLKLAEIINQTVKLGGNIVIPSFALERTQDLLFFLNRFMS 269
Query: 96 RMNLQAPIYFAVGLTEKATNYYKMFITWTNQKIRKT--FVQRNM--FDFK--HI--RPFD 147
+ + F + A + K+F R+T +V F+F+ H + D
Sbjct: 270 EGKIPSLKVFVD--SPMAISITKIFKEHPELYDRETSGWVNNGSSPFEFEGLHFTNKAAD 327
Query: 148 -KSFIDNPGPMVVFATPGMLHSG-LSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGV 205
K+ + P ++ A GM G + + + E+ +L + GF GT+G + G
Sbjct: 328 SKAILAEKDPCIIIAGSGMCTGGRIKHHLVNNISRPESTILFV-GFQATGTLGRLITDGA 386
Query: 206 KKLEFENKQIIDVKMAIEYM-SFSAHADAKGIMQLIQYCE--PKNVLLVHGEASKMVFLK 262
K++ Q V+ IE + +FSAHAD +++ ++ + P+ V + HGE
Sbjct: 387 KEVRILG-QHYPVQARIEELRAFSAHADQPTLLRWLKGFKNKPEMVFVTHGEPETSARFT 445
Query: 263 EKIK 266
E IK
Sbjct: 446 ETIK 449
>UNIPROTKB|F1MN22 [details] [associations]
symbol:RRNAD1 "Protein RRNAD1" species:9913 "Bos taurus"
[GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity"
evidence=IEA] InterPro:IPR020596 PROSITE:PS01131 InterPro:IPR025714
Pfam:PF13679 GO:GO:0000179 GO:GO:0031167
GeneTree:ENSGT00530000063745 IPI:IPI00686621 UniGene:Bt.46083
OMA:AHQAQEN EMBL:DAAA02007121 Ensembl:ENSBTAT00000001990
Uniprot:F1MN22
Length = 475
Score = 115 (45.5 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 56/202 (27%), Positives = 80/202 (39%)
Query: 832 IMGLHTCGDLSGTALRLFTKSSLQCLVQVGCCYHLLEEEFIRSPFWKDVDQSLYEHGYGF 891
+ GLH CGDLS LR F C CC ++ + + K L + G G+
Sbjct: 254 LTGLHACGDLSVALLRHF------C-----CCPEVVALASVGCCYMK-----LSDPG-GY 296
Query: 892 PLSEHLRSRKFF-LGRNVRMSGTQSPERVIDLKQTQTLPL---FYRALLEKYLRSKITIN 947
PLS+ + + L +R + E + Q L YRA LE +R
Sbjct: 297 PLSQWVAGLPGYELPYRLREGACHALEEYAERLQKAGPSLRTHCYRAALETVIRCAQP-E 355
Query: 948 DEEPKVVGRLATKCSNFVEYVHRAXXXXXXXXXXXXXXXTRLFNSHQREYEYLQIYYFLK 1007
P V G EYV R +HQ + + ++ L
Sbjct: 356 LRRPGVQGIPRVHELKIEEYVQRGLQRVGLDPHLPLNVAA--LRAHQAQENRVVAFFSLA 413
Query: 1008 TALAPVIEALIVLDRVLYLREQ 1029
LAP++E LI+LDR+LYL+EQ
Sbjct: 414 LLLAPLVETLILLDRLLYLQEQ 435
Score = 89 (36.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 1057 SHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1094
+HQ + + ++ L LAP++E LI+LDR+LYL+EQ
Sbjct: 398 AHQAQENRVVAFFSLALLLAPLVETLILLDRLLYLQEQ 435
Score = 83 (34.3 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 15/54 (27%), Positives = 34/54 (62%)
Query: 669 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQ 722
KK +E++ + ++V +++ + ++D+G GQG+LS ++L G S++ +Q
Sbjct: 133 KKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSIEGDQ 186
Score = 56 (24.8 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 14/62 (22%), Positives = 34/62 (54%)
Query: 608 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGSTITVDELFSKLQARKCGLVVESAKVSQLMS 667
KK +E++ + ++V +++ + ++D+GS S+ + GL+V+S + Q +
Sbjct: 133 KKQHEIRRLGELVKKLSDLTGCTQVVDVGSG---QGHLSRFMSLGLGLMVKSIEGDQRLV 189
Query: 668 EK 669
E+
Sbjct: 190 ER 191
>UNIPROTKB|F1RHJ0 [details] [associations]
symbol:RRNAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase
activity" evidence=IEA] InterPro:IPR020596 PROSITE:PS01131
InterPro:IPR025714 Pfam:PF13679 GO:GO:0000179 GO:GO:0031167
GeneTree:ENSGT00530000063745 CTD:51093 OMA:AHQAQEN EMBL:CU582900
RefSeq:NP_001230253.1 UniGene:Ssc.96505 Ensembl:ENSSSCT00000007087
GeneID:100152334 KEGG:ssc:100152334 Uniprot:F1RHJ0
Length = 475
Score = 116 (45.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 55/202 (27%), Positives = 81/202 (40%)
Query: 832 IMGLHTCGDLSGTALRLFTKSSLQCLVQVGCCYHLLEEEFIRSPFWKDVDQSLYEHGYGF 891
+ GLH CGDLS LR F+ CC ++ + + K L + G G+
Sbjct: 254 LTGLHACGDLSVALLRHFS-----------CCPEVVALASVGCCYMK-----LSDPG-GY 296
Query: 892 PLSEHLRSRKFF-LGRNVRMSGTQSPERVIDLKQTQTLPL---FYRALLEKYLRSKITIN 947
PLS+ + + L +R + E + Q L YRA LE +R +
Sbjct: 297 PLSQWVAGLPGYELPYRLREGACHALEEYAERLQRAGPGLRTHCYRAALETVIR-RAQPE 355
Query: 948 DEEPKVVGRLATKCSNFVEYVHRAXXXXXXXXXXXXXXXTRLFNSHQREYEYLQIYYFLK 1007
P V G EYV R +HQ + + ++ L
Sbjct: 356 LRRPGVQGIPRVHELKIEEYVQRGLQRVGLDPHLPLNLAA--LRAHQAQENRVVAFFSLA 413
Query: 1008 TALAPVIEALIVLDRVLYLREQ 1029
LAP++E LI+LDR+LYL+EQ
Sbjct: 414 LLLAPLVETLILLDRLLYLQEQ 435
Score = 80 (33.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 669 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLD 719
KK +E++ + ++V +++ + ++D+G GQG+LS ++L G S++
Sbjct: 133 KKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSIE 183
Score = 54 (24.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 16/75 (21%), Positives = 38/75 (50%)
Query: 608 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGSTITVDELFSKLQARKCGLVVESAKVSQLMS 667
KK +E++ + ++V +++ + ++D+GS S+ + GL+V+S + +
Sbjct: 133 KKQHEIRRLGELVKKLSDLTGCTQVVDVGSG---QGHLSRFMSLGLGLMVKSIEGDPRLV 189
Query: 668 EKKSYEVQVMSQVVA 682
E+ Q + Q +A
Sbjct: 190 ERAQRLDQELLQTLA 204
>UNIPROTKB|Q8EJC6 [details] [associations]
symbol:SO_0541 "RNA-metabolizing metallo-beta-lactamase
family protein" species:211586 "Shewanella oneidensis MR-1"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 OMA:MAVEYMS HOGENOM:HOG000244774
KO:K07576 RefSeq:NP_716177.2 ProteinModelPortal:Q8EJC6
DNASU:1168409 GeneID:1168409 KEGG:son:SO_0541 PATRIC:23520762
ProtClustDB:CLSK2516780 Uniprot:Q8EJC6
Length = 480
Score = 147 (56.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 72/265 (27%), Positives = 120/265 (45%)
Query: 9 QSIVYTGDYNMTPDRHL-GAAWIDKCRPDLLITESTYATTIRDS--KRCRE-RD-FLKKV 63
+ IV++GD L +D DL++ ESTY S E +D F K V
Sbjct: 182 KKIVFSGDLGRAGMPILQNPTLVDTA--DLVLMESTYGNRFHRSWTDTLAELKDIFAKTV 239
Query: 64 HECVDRGGKVLIPVFALGRAQELCILLETY---WE----RMNLQAPIYFAVGLTEKATNY 116
+E G +L+P F++GRAQEL L Y W+ ++ L +P+ A+ T N
Sbjct: 240 NESQ---GNILLPAFSVGRAQELLYLFHLYAKEWDLGRWKICLDSPM--AIEATRVYVNN 294
Query: 117 YKMFITWTNQKIRKTFVQRNMF-DFKHIRPFDKSFIDNP--GPMVVFATPGMLHSGL--S 171
Y + + R+ Q + + + I+ ++S N +++ A GM + G S
Sbjct: 295 YPLMDEDFKRFTRQHPGQHPLLSNVEFIQTTEESIALNEVHKGLIIIAGSGMCNGGRIRS 354
Query: 172 LIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMS-FSAH 230
+ W E +++I GF GT G ++ G K+L + +V + + SAH
Sbjct: 355 HLEHNLWRS-ECDVIIC-GFQALGTPGRALVDGAKELTIHGNSV-NVAAKLHTVGGLSAH 411
Query: 231 ADAKGIMQLIQYCEPKNVL-LVHGE 254
AD +++ ++ E + L LVHGE
Sbjct: 412 ADQAELLRWYRHFEEQPPLVLVHGE 436
>TIGR_CMR|SO_0541 [details] [associations]
symbol:SO_0541 "metallo-beta-lactamase family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003824 "catalytic activity"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_716177.2
ProteinModelPortal:Q8EJC6 DNASU:1168409 GeneID:1168409
KEGG:son:SO_0541 PATRIC:23520762 ProtClustDB:CLSK2516780
Uniprot:Q8EJC6
Length = 480
Score = 147 (56.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 72/265 (27%), Positives = 120/265 (45%)
Query: 9 QSIVYTGDYNMTPDRHL-GAAWIDKCRPDLLITESTYATTIRDS--KRCRE-RD-FLKKV 63
+ IV++GD L +D DL++ ESTY S E +D F K V
Sbjct: 182 KKIVFSGDLGRAGMPILQNPTLVDTA--DLVLMESTYGNRFHRSWTDTLAELKDIFAKTV 239
Query: 64 HECVDRGGKVLIPVFALGRAQELCILLETY---WE----RMNLQAPIYFAVGLTEKATNY 116
+E G +L+P F++GRAQEL L Y W+ ++ L +P+ A+ T N
Sbjct: 240 NESQ---GNILLPAFSVGRAQELLYLFHLYAKEWDLGRWKICLDSPM--AIEATRVYVNN 294
Query: 117 YKMFITWTNQKIRKTFVQRNMF-DFKHIRPFDKSFIDNP--GPMVVFATPGMLHSGL--S 171
Y + + R+ Q + + + I+ ++S N +++ A GM + G S
Sbjct: 295 YPLMDEDFKRFTRQHPGQHPLLSNVEFIQTTEESIALNEVHKGLIIIAGSGMCNGGRIRS 354
Query: 172 LIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMS-FSAH 230
+ W E +++I GF GT G ++ G K+L + +V + + SAH
Sbjct: 355 HLEHNLWRS-ECDVIIC-GFQALGTPGRALVDGAKELTIHGNSV-NVAAKLHTVGGLSAH 411
Query: 231 ADAKGIMQLIQYCEPKNVL-LVHGE 254
AD +++ ++ E + L LVHGE
Sbjct: 412 ADQAELLRWYRHFEEQPPLVLVHGE 436
>UNIPROTKB|Q5E9V4 [details] [associations]
symbol:RRNAD1 "Protein RRNAD1" species:9913 "Bos taurus"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0000179 "rRNA
(adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA]
InterPro:IPR020596 GO:GO:0016021 InterPro:IPR025714 Pfam:PF13679
GO:GO:0000179 GO:GO:0031167 EMBL:BT020816 IPI:IPI00686621
RefSeq:NP_001015641.1 UniGene:Bt.46083 GeneID:532204
KEGG:bta:532204 CTD:51093 eggNOG:NOG11886 HOVERGEN:HBG054541
InParanoid:Q5E9V4 OrthoDB:EOG4VMFFK NextBio:20875630 Uniprot:Q5E9V4
Length = 475
Score = 112 (44.5 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 55/202 (27%), Positives = 80/202 (39%)
Query: 832 IMGLHTCGDLSGTALRLFTKSSLQCLVQVGCCYHLLEEEFIRSPFWKDVDQSLYEHGYGF 891
+ GLH CGDLS L+ F C CC ++ + + K L + G G+
Sbjct: 254 LTGLHACGDLSVALLKHF------C-----CCPEVVALASVGCCYMK-----LSDPG-GY 296
Query: 892 PLSEHLRSRKFF-LGRNVRMSGTQSPERVIDLKQTQTLPL---FYRALLEKYLRSKITIN 947
PLS+ + + L +R + E + Q L YRA LE +R
Sbjct: 297 PLSQWVAGLPGYELPYRLREGACHALEEYAERLQKAGPSLRTHCYRAALETVIRCAQP-E 355
Query: 948 DEEPKVVGRLATKCSNFVEYVHRAXXXXXXXXXXXXXXXTRLFNSHQREYEYLQIYYFLK 1007
P V G EYV R +HQ + + ++ L
Sbjct: 356 LRRPGVQGIPRVHELKIEEYVQRGLQRVGLDPHLPLNVAA--LRAHQAQENRVVAFFSLA 413
Query: 1008 TALAPVIEALIVLDRVLYLREQ 1029
LAP++E LI+LDR+LYL+EQ
Sbjct: 414 LLLAPLVETLILLDRLLYLQEQ 435
Score = 89 (36.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 1057 SHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1094
+HQ + + ++ L LAP++E LI+LDR+LYL+EQ
Sbjct: 398 AHQAQENRVVAFFSLALLLAPLVETLILLDRLLYLQEQ 435
Score = 83 (34.3 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 15/54 (27%), Positives = 34/54 (62%)
Query: 669 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQ 722
KK +E++ + ++V +++ + ++D+G GQG+LS ++L G S++ +Q
Sbjct: 133 KKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSIEGDQ 186
>UNIPROTKB|Q96FB5 [details] [associations]
symbol:RRNAD1 "Protein RRNAD1" species:9606 "Homo sapiens"
[GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
InterPro:IPR020596 GO:GO:0016021 EMBL:CH471121 InterPro:IPR025714
Pfam:PF13679 GO:GO:0000179 GO:GO:0031167 EMBL:AL590666 CTD:51093
eggNOG:NOG11886 HOVERGEN:HBG054541 EMBL:AF151800 EMBL:BC011382
IPI:IPI00101357 RefSeq:NP_057081.3 UniGene:Hs.512597
ProteinModelPortal:Q96FB5 SMR:Q96FB5 DMDM:152125834 PRIDE:Q96FB5
Ensembl:ENST00000368216 GeneID:51093 KEGG:hsa:51093 UCSC:uc001fpu.3
GeneCards:GC01P156699 H-InvDB:HIX0001173 HGNC:HGNC:24273
HPA:HPA047426 neXtProt:NX_Q96FB5 PharmGKB:PA142672516
HOGENOM:HOG000010198 InParanoid:Q96FB5 OMA:AHQAQEN PhylomeDB:Q96FB5
GenomeRNAi:51093 NextBio:53781 ArrayExpress:Q96FB5 Bgee:Q96FB5
CleanEx:HS_C1orf66 Genevestigator:Q96FB5 Uniprot:Q96FB5
Length = 475
Score = 109 (43.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 54/202 (26%), Positives = 80/202 (39%)
Query: 832 IMGLHTCGDLSGTALRLFTKSSLQCLVQVGCCYHLLEEEFIRSPFWKDVDQSLYEHGYGF 891
+ GLH CGDLS LR F+ CC ++ + + K L + G G+
Sbjct: 254 LTGLHACGDLSVALLRHFS-----------CCPEVVALASVGCCYMK-----LSDPG-GY 296
Query: 892 PLSEHLRSRKFF-LGRNVRMSGTQSPERVIDLKQTQTLPL---FYRALLEKYLRSKITIN 947
PLS+ + + L +R + E + Q L YRA LE +R +
Sbjct: 297 PLSQWVAGLPGYELPYRLREGACHALEEYAERLQKAGPGLRTHCYRAALETVIR-RARPE 355
Query: 948 DEEPKVVGRLATKCSNFVEYVHRAXXXXXXXXXXXXXXXTRLFNSHQREYEYLQIYYFLK 1007
P V G EYV R +H + + ++ L
Sbjct: 356 LRRPGVQGIPRVHELKIEEYVQRGLQRVGLDPQLPLNLAA--LQAHVAQENRVVAFFSLA 413
Query: 1008 TALAPVIEALIVLDRVLYLREQ 1029
LAP++E LI+LDR+LYL+EQ
Sbjct: 414 LLLAPLVETLILLDRLLYLQEQ 435
Score = 86 (35.3 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 669 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQ 722
KK +E++ + ++V +++ + ++D+G GQG+LS +AL G S++ +Q
Sbjct: 133 KKQHEIRRLGELVKKLSDFTGCTQVVDVGSGQGHLSRFMALGLGLMVKSIEGDQ 186
>RGD|1311265 [details] [associations]
symbol:Rrnad1 "ribosomal RNA adenine dimethylase domain
containing 1" species:10116 "Rattus norvegicus" [GO:0016021
"integral to membrane" evidence=IEA] RGD:1311265 GO:GO:0016021
InterPro:IPR025714 Pfam:PF13679 GeneTree:ENSGT00530000063745
CTD:51093 eggNOG:NOG11886 HOVERGEN:HBG054541 OrthoDB:EOG4VMFFK
OMA:AHQAQEN EMBL:BC079059 IPI:IPI00464702 RefSeq:NP_001014195.1
UniGene:Rn.100135 PRIDE:Q6AYG0 Ensembl:ENSRNOT00000015793
GeneID:361976 KEGG:rno:361976 UCSC:RGD:1311265 InParanoid:Q6AYG0
NextBio:678258 Genevestigator:Q6AYG0 Uniprot:Q6AYG0
Length = 475
Score = 108 (43.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 58/231 (25%), Positives = 89/231 (38%)
Query: 804 ITHFVTPDSDISSILSQA-YPQDSLHNVCIMGLHTCGDLSGTALRLFTKSSLQCLVQVGC 862
+ +V+P + +L P S + + GLH CGDLS LR F C C
Sbjct: 225 VVQWVSPTTLCEELLLPLEMPGQSSTRLLLTGLHACGDLSVALLRHF------C-----C 273
Query: 863 CYHLLEEEFIRSPFWKDVDQSLYEHGYGFPLSEHLRSRKFF-LGRNVRMSGTQSPERVID 921
C ++ + + K D Y PLS+ + L +R + E +
Sbjct: 274 CPEVVALASVGCCYMKLSDPGSY------PLSQWVAGLPGHELPYRLREGACHALEDYAE 327
Query: 922 LKQTQTLPL---FYRALLEKYLRSKITINDEEPKVVGRLATKCSNFVEYVHRAXXXXXXX 978
Q L +RA LE +R ++ P V G EYV +
Sbjct: 328 RLQKAGPGLQTHCFRAALEAVIR-QVCPELRRPGVQGIPRVHELKIEEYVQQGLQRVGLD 386
Query: 979 XXXXXXXXTRLFNSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1029
+HQ + + ++ L LAP++E LI+LDR+LYL+EQ
Sbjct: 387 PQLPLDQAA--LQAHQAQENRVVAFFSLALLLAPLVETLILLDRMLYLQEQ 435
Score = 89 (36.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 1057 SHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1094
+HQ + + ++ L LAP++E LI+LDR+LYL+EQ
Sbjct: 398 AHQAQENRVVAFFSLALLLAPLVETLILLDRMLYLQEQ 435
Score = 86 (35.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 669 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQ 722
KK +E++ + ++V +++ + ++D+G GQG+LS ++L G SL+ N+
Sbjct: 133 KKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNK 186
>MGI|MGI:2387197 [details] [associations]
symbol:Rrnad1 "ribosomal RNA adenine dimethylase domain
containing 1" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] MGI:MGI:2387197 GO:GO:0016021
InterPro:IPR025714 Pfam:PF13679 CTD:51093 eggNOG:NOG11886
HOVERGEN:HBG054541 OrthoDB:EOG4VMFFK EMBL:AK035389 EMBL:BC023814
IPI:IPI00227525 IPI:IPI00850333 RefSeq:NP_705790.3
UniGene:Mm.296008 ProteinModelPortal:Q8BZG5 SMR:Q8BZG5 PRIDE:Q8BZG5
GeneID:229503 KEGG:mmu:229503 UCSC:uc008pth.2 UCSC:uc008pti.2
InParanoid:Q8BZG5 NextBio:379463 CleanEx:MM_BC023814
Genevestigator:Q8BZG5 Uniprot:Q8BZG5
Length = 475
Score = 104 (41.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 58/231 (25%), Positives = 89/231 (38%)
Query: 804 ITHFVTPDSDISSILSQAY-PQDSLHNVCIMGLHTCGDLSGTALRLFTKSSLQCLVQVGC 862
+ +V+P + +L P S + + GLH CGDLS LR F C C
Sbjct: 225 VVQWVSPTTLCEELLLPLERPGQSSARLLLTGLHACGDLSVALLRHF------C-----C 273
Query: 863 CYHLLEEEFIRSPFWKDVDQSLYEHGYGFPLSEHLRSRKFF-LGRNVRMSGTQSPERVID 921
C ++ + + K D Y PLS+ + L +R + E +
Sbjct: 274 CPEVVALASVGCCYMKLSDPGSY------PLSQWIAGLPGHELPYRLREGACHALEDYAE 327
Query: 922 L--KQTQTLPLF-YRALLEKYLRSKITINDEEPKVVGRLATKCSNFVEYVHRAXXXXXXX 978
K L +RA LE +R ++ P V G EYV +
Sbjct: 328 RLHKAEPGLQTHCFRAALETVIR-QVYPELRRPGVQGIPRVHELKIEEYVKQGLKRVGLD 386
Query: 979 XXXXXXXXTRLFNSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1029
+HQ + + ++ L LAP++E LI+LDR+LYL+EQ
Sbjct: 387 PQLPLDLAA--LQAHQAQENRVVAFFSLALLLAPLVETLILLDRMLYLQEQ 435
Score = 90 (36.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 669 KKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQ 722
KK +E++ + ++V +++ + ++D+G GQG+LS ++L G SL+ NQ
Sbjct: 133 KKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNQ 186
Score = 89 (36.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 1057 SHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1094
+HQ + + ++ L LAP++E LI+LDR+LYL+EQ
Sbjct: 398 AHQAQENRVVAFFSLALLLAPLVETLILLDRMLYLQEQ 435
>ASPGD|ASPL0000014896 [details] [associations]
symbol:AN8165 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] EMBL:BN001302 EMBL:AACD01000141 InterPro:IPR025714
Pfam:PF13679 eggNOG:NOG313369 RefSeq:XP_681434.1
EnsemblFungi:CADANIAT00004205 GeneID:2869242 KEGG:ani:AN8165.2
HOGENOM:HOG000160522 OMA:DFGSGQN OrthoDB:EOG4BP4M3 Uniprot:Q5AU65
Length = 635
Score = 105 (42.0 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 829 NVCIMGLHTCGDLSGTALR-LFTKSSLQCLVQVGCCYHLLEEEF----IRSPFWKDV--- 880
NV ++ LH+CG+L +R L S++ + +GCCY+L+ E + P + +
Sbjct: 360 NVMVVSLHSCGNLVHHGVRALVLNPSVKAIAMIGCCYNLMTERLGPATYKLPVLRTMHPR 419
Query: 881 ---DQSLYEHGYGFPLSEHLRSRKFFLGRNVRMSGT 913
D + Y+ +GFP+S L K G V+++ T
Sbjct: 420 LSKDATAYDP-HGFPMSRRLEEFKHDGGTGVKLNIT 454
Score = 70 (29.7 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 1043 LTQVDDEEVTRLFDSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQ 1094
+ + DEE+ R + + L + + L + A V EA+I +DR +LREQ
Sbjct: 556 MVTITDEELDRYATEYWPTKKRLSVTWTLMSFCAAVAEAIIAVDRWQFLREQ 607
Score = 63 (27.2 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 666 MSEKKSYEVQVMSQVVAAVTNSC------DSSHIIDLGGGQGYLSTILA 708
M KK +EV S+ V ++ ++ + +HI+D G GQ YL LA
Sbjct: 144 MKVKKYHEVAHFSKYVNSLCDTVHRERGEEITHIVDFGSGQNYLGRTLA 192
Score = 56 (24.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1000 LQIYYFLKTALAPVIEALIVLDRVLYLREQ 1029
L + + L + A V EA+I +DR +LREQ
Sbjct: 578 LSVTWTLMSFCAAVAEAIIAVDRWQFLREQ 607
Score = 41 (19.5 bits), Expect = 0.00089, Sum P(3) = 0.00089
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 810 PDSDISSILSQAYPQDSLHNVCIMGLH 836
PD+ + ++LS A D ++C G+H
Sbjct: 16 PDAYVEALLSFATSSDLFRHLC-GGVH 41
>UNIPROTKB|G4N6C6 [details] [associations]
symbol:MGG_06570 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0006379 "mRNA cleavage" evidence=ISS] InterPro:IPR027075
Pfam:PF07521 GO:GO:0006378 EMBL:CM001234 GO:GO:0005847
GO:GO:0006379 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 RefSeq:XP_003716967.1 EnsemblFungi:MGG_06570T0
GeneID:2684725 KEGG:mgr:MGG_06570 Uniprot:G4N6C6
Length = 962
Score = 115 (45.5 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 42/152 (27%), Positives = 63/152 (41%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDR-HLGAAW------------IDKCRPDLLITESTYATT 47
++ ++ G +SIVY D+N+ D + GAAW I++ R + ST
Sbjct: 190 IWHIQHGMESIVYAVDWNLARDNVYAGAAWMGGGHGGGGAEVIEQLRKPTALVCSTRTAE 249
Query: 48 IRDSKRCRERDFLKKVHECVDRGGKVLIPVFALGRAQELCILLETYW------ERMNLQ- 100
++ R++ L + + RGG VLIPV + R EL LLE W E L
Sbjct: 250 GGLTRAARDKQLLDTMRMAISRGGTVLIPVDSSARVLELAYLLEHAWRSEASTEGGGLST 309
Query: 101 APIYFAVGLTEKATNYYKMFITWTNQKIRKTF 132
A +Y A K W + I + F
Sbjct: 310 AKLYLAGRSVHSTIKLAKSMFEWMDNSIVQEF 341
Score = 70 (29.7 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 18/83 (21%), Positives = 39/83 (46%)
Query: 197 IGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAS 256
+ +V++G KL + V + + + FS D + + LI +P+ ++LV G A
Sbjct: 689 VEEEVVTGPAKL-VHTSTTVSVNLRLALIDFSGLHDRRSLAMLIPLIQPRKLILVAGSAD 747
Query: 257 KMVFLKEKIKQEFNLDCFMPANG 279
+ + + ++ ++ F P G
Sbjct: 748 ETEAVADDCRRNA-IEVFTPPVG 769
Score = 49 (22.3 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 138 FDFKHIRPFDKSF---------IDNPGPMVVFATPGMLHSGLSLIIFKKWAPVENNMLIM 188
FDFK++R D+ D V+ AT L G S I A NM+I+
Sbjct: 369 FDFKYLRLLDRKAQVLKLLEPSTDELRGKVILATDTSLEWGFSKDIISAIANDSRNMVIL 428
Query: 189 P 189
P
Sbjct: 429 P 429
Score = 38 (18.4 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 547 DNHVETNSELVKFFQAADKFRLTSLMNGESIITVD-ELFSKLQARKCG 593
D V+TN+ +VK K + G I+TV +L + A+K G
Sbjct: 773 DASVDTNAWVVKLADPLVKRLKWQQVRGLGIVTVTAQLTATPAAQKNG 820
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1101 1062 0.00084 123 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 81
No. of states in DFA: 629 (67 KB)
Total size of DFA: 493 KB (2229 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 89.58u 0.10s 89.68t Elapsed: 00:00:36
Total cpu time: 89.60u 0.10s 89.70t Elapsed: 00:00:36
Start: Thu Aug 15 14:44:42 2013 End: Thu Aug 15 14:45:18 2013