RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9966
(1101 letters)
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 380 bits (979), Expect = e-121
Identities = 114/290 (39%), Positives = 175/290 (60%), Gaps = 9/290 (3%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 164 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 223
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNL--QAPIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ PIY+A L +K Y+
Sbjct: 224 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 283
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRPFD-KSFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 284 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 343
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 344 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 403
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF------NLDCFMPANGES 281
+ I+ +P +V+LVHGE ++M LK + +E+ +++ P N E+
Sbjct: 404 EFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEA 453
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 362 bits (931), Expect = e-115
Identities = 74/288 (25%), Positives = 135/288 (46%), Gaps = 13/288 (4%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
+ +++VY+GD L + DL++ E TY R R+FL
Sbjct: 147 FVVAQGEGRTLVYSGDLGNREKDVLPDPSLPP-LADLVLAEGTYGDRPHRPYRETVREFL 205
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
+ + + + +GGKVLIP FA+ RAQE+ +L T+ R+ +APIY + + + Y
Sbjct: 206 EILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRL 264
Query: 121 ITWTNQKIRKTFVQ-RNMFDFKHIRPFD-----KSFIDNPGPMVVFATPGMLHSGLSLII 174
+ + +++++ F+Q +N F + + K+ PGPMVV A GML G L
Sbjct: 265 VRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHH 324
Query: 175 FKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYM-SFSAHADA 233
K N L+ G+ QG +G ++++ + ++ + ++ ++ + FS HA
Sbjct: 325 LKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEE-VPLRASVHTLGGFSGHAGQ 383
Query: 234 KGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGES 281
++ +Q V+LVHGE K++ L + + + + GE
Sbjct: 384 DELLDWLQ--GEPRVVLVHGEEEKLLALGKLL-ALRGQEVSLARFGEG 428
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 365 bits (940), Expect = e-113
Identities = 88/297 (29%), Positives = 150/297 (50%), Gaps = 17/297 (5%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTY--ATTIRDSKRCRERD 58
+ G +I TGD+ P R L A R + L+ ESTY A I+ + E+
Sbjct: 352 HLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKR 411
Query: 59 FLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYK 118
++ +H + RGGKVLIP A+GRAQE+ ++LE Y ++ PIY G+ +AT +
Sbjct: 412 LIEVIHNTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLD-GMIWEATAIHT 470
Query: 119 MFITWTNQKIRKTFVQ--RNMFDFKHIRPFD-----KSFIDNPGPMVVFATPGMLHSGLS 171
+ + ++++R+ + N F + P + ID+ P ++ A+ GML G S
Sbjct: 471 AYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPS 530
Query: 172 LIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKL----EFENKQIIDVKMAIEYMS- 226
+ FK+ AP N +I + +GT+G +V SG++++ E ++I V M + +
Sbjct: 531 VEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTIDG 590
Query: 227 FSAHADAKGIMQLIQYCE--PKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGES 281
FS HAD + +M + P+ ++ VHGE K + L I ++F + P N ++
Sbjct: 591 FSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAPNNLDT 647
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 357 bits (917), Expect = e-110
Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 17/297 (5%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYA--TTIRDSKRCRERD 58
+ G ++VYTGD+ R L AA R + L+ ESTY ++ S+ E++
Sbjct: 337 HLHIGDGQHNMVYTGDFKYEQSRLLEAAANRFPRIETLVMESTYGGHEDVQPSRNRAEKE 396
Query: 59 FLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQ-APIYFAVGLTEKATNYY 117
+K ++ + RGGK+LIPVFA+GRAQEL I+LE Y + P+Y G+ +A +
Sbjct: 397 LVKTIYSTLRRGGKILIPVFAVGRAQELMIVLEEYIRTGIIDEVPVYID-GMIWEANAIH 455
Query: 118 KMFITWTNQKIRKTFVQ--RNMFDFKHIRPFDKS----FIDNPGPMVVFATPGMLHSGLS 171
+ ++ +R N F + I P ++ +T GML G S
Sbjct: 456 TARPEYLSKDLRDQIFHMGHNPFISDIFHKVNGMDERREIVEGEPSIILSTSGMLTGGNS 515
Query: 172 LIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKL----EFENKQIIDVKMAIEYMS- 226
L FK +N L+ G+ +G++G ++ G K++ E + ++ +V+M I+ +
Sbjct: 516 LEYFKWLCEDPDNSLVFVGYQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKTIEG 575
Query: 227 FSAHADAKGIMQLIQYCE--PKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGES 281
FS H+D + +M+ ++ P+ +LL HG+ K + L I + + ++ P N E+
Sbjct: 576 FSGHSDRRQLMEYVKRISPKPEKILLCHGDNYKTLDLASSIYRTYRIETKTPLNLET 632
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 352 bits (906), Expect = e-109
Identities = 81/298 (27%), Positives = 145/298 (48%), Gaps = 18/298 (6%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTY--ATTIRDSKRCRERD 58
F + G ++V+TGDY R A R + +I+E+TY A + + + E+
Sbjct: 340 HFHIGDGLHNVVFTGDYKYEKTRLFDPAVNKFPRVETVISEATYGNANAFQPALKDAEKH 399
Query: 59 FLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQ-APIYFAVGLTEKATNYY 117
V ++RGG +IP FA+GR+QE+ I+LE + + P+Y G+ +AT +
Sbjct: 400 LQMVVKNTIERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLD-GMIWEATAIH 458
Query: 118 KMFITWTNQKIRKTFVQ--RNMFDFKHIRPFD-----KSFIDNPGPMVVFATPGMLHSGL 170
+ N +RK Q +N F + +P D + I NP P V+ AT GM++ G
Sbjct: 459 ATHPEYLNNDLRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGP 518
Query: 171 SLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENK----QIIDVKMAIEYMS 226
+ FK +A N L+ G+ GTIG ++ G K++ K +++ + M ++ +
Sbjct: 519 VMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVD 578
Query: 227 -FSAHADAKGIMQLIQYCE--PKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGES 281
FS H+D + +M+ ++ + P+ V HG+ V L + ++ ++ N E+
Sbjct: 579 GFSGHSDRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRALTNLET 636
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 206 bits (526), Expect = 5e-56
Identities = 48/336 (14%), Positives = 98/336 (29%), Gaps = 34/336 (10%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHL-GAAWIDKC--------RPDLLITESTYATTIRDS 51
++ + ++ +VY +N T D L A+ +D RP +IT + +
Sbjct: 164 IWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPF 223
Query: 52 KRCRERDFLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMN-----LQAPIYFA 106
K+ + F + + + G V+IPV G+ +L + Q P+
Sbjct: 224 KKR-SKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLIL 282
Query: 107 VGLTEKATNYYKMFITWTNQKIRKTFVQRNM---FDFKHIRPFD--KSFIDNPGPMVVFA 161
+ Y K + W + + KT+ RN F+ PG + F
Sbjct: 283 SYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIGSRIKIIAPNELSKYPGSKICFV 342
Query: 162 TPGMLHSGLSLIIFKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMA 221
+ L + K E LI+ + + + + + N +
Sbjct: 343 SE---VGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDGK 399
Query: 222 IEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGES 281
D K L E ++ K++ N +
Sbjct: 400 SFLCDNYISID-----------TIKEEPLSKEETEAFKVQLKEKKRDRNKKILLVKRESK 448
Query: 282 CFVQTDMKISIDVSVNLLKEEAVKYNSEPPNPLKER 317
+ I ++ + + + P +
Sbjct: 449 KLANGNAIIDDTNGERAMRNQDILVENVNGVPPIDH 484
Score = 39.4 bits (91), Expect = 0.008
Identities = 6/75 (8%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 207 KLEFENKQIIDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIK 266
K + +K ++ ++ + D + + + + ++L + + + K+
Sbjct: 641 KRTISTVNV-QLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLI 699
Query: 267 QEFNLDCFMPANGES 281
++ N++ +
Sbjct: 700 KK-NIEVVNMPLNKI 713
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.1 bits (194), Expect = 6e-15
Identities = 101/695 (14%), Positives = 203/695 (29%), Gaps = 206/695 (29%)
Query: 16 DYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRE-RDFLKKV--HECVDRGGK 72
D+ ++ + + D+L S + D+ C++ +D K + E +D
Sbjct: 8 DFETGEHQY-------QYK-DIL---SVFEDAFVDNFDCKDVQDMPKSILSKEEID---H 53
Query: 73 VLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNY---------------- 116
+++ A+ L L + E M + V + NY
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEVLR-INYKFLMSPIKTEQRQPSM 107
Query: 117 -YKMFITW------TNQKIRKTFVQRNMFDFKHIRPFDKSFIDNPGPMVVFATPGMLHSG 169
+M+I NQ K V R + +R P V+ G+L SG
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLR--QALLELRPAKNVLID--GVLGSG 162
Query: 170 LSLIIFKKW--APVENNMLIMPGFCVQG---TIGHK-----VLSGVKKL----EFENKQI 215
K W V + + + + + VL ++KL +
Sbjct: 163 ------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 216 IDVKMAIEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKE----KIKQEFNL 271
D I+ S A+ + +++ Y +N LLV L K FNL
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLV---------LLNVQNAKAWNAFNL 264
Query: 272 DCFMPANGESCFVQT-DMKISIDVSVNLLKEEAVKYNSEPPNPLKERQIHGVLVIKDSSI 330
C + + T +++ +S ++ L ++ +L +K
Sbjct: 265 SCKI-------LLTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDEVKSLL-LKYLDC 313
Query: 331 SLMDV-DEACKE-------VG--ISRHIVRFTSNVQISDSSPINKTLELIYDQLLSYLQD 380
D+ E + I + + N + + + +E + L +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPA--E 370
Query: 381 KSQEYKIQLTESSLSI--DSVLLSVERIDDKNKRVFVTWPNQDEEVGKIVLHVLKSMSNT 438
+ + LS+ S + + + W + + +V++ L S
Sbjct: 371 YRKMFD------RLSVFPPSAHIPTILLS-------LIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 439 QGQPFEFYPYTDTVFVLSSSRYVQGTYYLHTYLTSVTKHQKETMELIKNTID-------- 490
+ QP E T + + + + L ++ +D
Sbjct: 418 EKQPKES------------------TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 491 EMIEFITPNI-------------ACVNTHTV----------HFMVEKLWETTIPKAILSQ 527
+ + I P + + + F+ +K+ +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW----- 514
Query: 528 VNNSPSFDSLLEEFWKSRQ---DNHVETNSELVKFFQAADKFRLTSLMNGESIITVDELF 584
N S S + L++ + DN LV A F L E +
Sbjct: 515 -NASGSILNTLQQLKFYKPYICDND-PKYERLVN---AILDF----LPKIEENLICS--- 562
Query: 585 SKLQARKCGQVVESAKVSQLMSEKKSYEVQVMSQV 619
K ++ A LM+E ++ + QV
Sbjct: 563 ------KYTDLLRIA----LMAEDEAIFEEAHKQV 587
Score = 74.9 bits (183), Expect = 1e-13
Identities = 102/649 (15%), Positives = 202/649 (31%), Gaps = 197/649 (30%)
Query: 465 YYLHTYL-TSVTKHQKETMELIKNTIDEMIEFITPNIACVNTHTVHFMVEKLWETTIPKA 523
++ H ++ +HQ + +++ D ++ N C + V+ + ++ + K
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVD----NFDCKD-------VQDMPKSILSKE 49
Query: 524 ILSQVNNSPSFDS-LLEEFW--KSRQDNHVETNSELVKFFQAADK-------------FR 567
+ + S S L FW S+Q+ V+ KF + + R
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ------KFVEEVLRINYKFLMSPIKTEQR 103
Query: 568 LTSLMNGESIITVDELFSKLQARKCGQVVESAKVSQLMSEKKSYEVQV--------MS-- 617
S+M I D L++ Q V +L + E++ +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALLELRPAKNVLIDGVLGS 161
Query: 618 --QVVAAVTNSCDSSHI----------IDLGSTITVDELFSKLQ---------------- 649
VA + C S + ++L + + + + LQ
Sbjct: 162 GKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 650 ARKCGLVVESAK--VSQLMSEKKSYE--------VQVMSQVVAAVTNSC-------DSSH 692
+ L + S + + +L+ K YE VQ ++ A SC
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQ- 276
Query: 693 IIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRSKKLEDSEKESKGPFQSYAGV 752
+ D T ++L H TL+ E K Y
Sbjct: 277 VTDFLSAATT--THISLDHHSMTLT---------------------PDEVKSLLLKYLDC 313
Query: 753 INKKLWMRTQNRQTS-------HASVEHHG---KNWK-----RKSKAPVVSIKDEELVVC 797
+ L + T+ S+ NWK + + S+ E
Sbjct: 314 RPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 798 KDKCKQITHFVTPDSDISSILSQAYPQDSLHNVCIMGLHTCGDLSGTALRL--FTKS--S 853
+ +++ F P + I +IL D + + ++ ++ S + T S S
Sbjct: 372 RKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 854 LQCLVQVGCCY----H--LLEE-EFIRSPFWKD-----VDQSLYEH-GYGFPLSEHLR-- 898
+ ++V H +++ ++ D +DQ Y H G+ HL+
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH------HLKNI 484
Query: 899 ---------SRKF----FLGRNVRMSGT--QSPERVIDLKQTQTLPLFYRALLEKYLRSK 943
F FL + +R T + +++ Q L+ Y +
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ----------LKFY-KPY 533
Query: 944 ITINDEEPKVVGRLATKCSNFVE------YVHRAVDKLKLDLEVDDEEV 986
I ND + + RL +F+ + D L++ L +DE +
Sbjct: 534 ICDNDPKYE---RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 69.1 bits (168), Expect = 7e-12
Identities = 79/540 (14%), Positives = 158/540 (29%), Gaps = 186/540 (34%)
Query: 692 HIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRSKKLEDSEKESKGPFQS--Y 749
H +D G+ Q+ K + + A V + +D + K
Sbjct: 5 HHMDFETGE--------HQYQYKDILSVFED-----AFVDNFDCKDVQDMPKSILSKEEI 51
Query: 750 AGVINKK---------LW-MRTQNRQTSHASVEH-HGKN-------WKRKSKAPVVSIKD 791
+I K W + ++ + VE N K + + P S+
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP--SMMT 109
Query: 792 EELVVCKDKCKQITHFVTPDS--------DISSILSQAYPQDSLHNVCIMGLHTCGDLSG 843
+ +D+ + + L + P NV I G+ G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK---NVLIDGVLGSG---- 162
Query: 844 TALRLFTKSSLQCLVQVGCCYHLLEEEFIRSPFWKDVD------------QSLY------ 885
K+ + C + ++ + FW ++ Q L
Sbjct: 163 -------KT---WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 886 -----EHGYGFPLSEH---LRSRKFFLGR----------NVR------------------ 909
+H L H R+ + NV+
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 910 --------MSGTQSPERVID-----LKQTQTLPLFYRALLEKY--LRSKI-TINDEEPKV 953
+S + +D L + L + L + L ++ T N P+
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRR 329
Query: 954 VGRLATKCSNFVE----YVHRAVDKL----KLDLEVDDEEVTRLFNSHQREYEYLQIYYF 1005
+ +A + + + H DKL + L V + R + ++ L + F
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR------KMFDRLSV--F 381
Query: 1006 LKTALAP--VIEAL-----------IV--LDRVLYLREQQKPQIIS--NLFLSLLTQVDD 1048
+A P ++ + +V L + + +Q K IS +++L L ++++
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 1049 E-----------EVTRLFDS------HQREYEYLQIYYFLKTALAPVIEALIVLDRVLYL 1091
E + + FDS + +Y Y I + LK + L R+++L
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH---PERMTLFRMVFL 498
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.3 bits (182), Expect = 2e-13
Identities = 97/654 (14%), Positives = 185/654 (28%), Gaps = 257/654 (39%)
Query: 493 IE--FITPNIACVNTHTVHFMVEKLWETTIPKAILSQVNNSPSFDSLL----EEFWKSRQ 546
+E + P F+ +L E F+ +L E F
Sbjct: 16 LEHVLLVP-------TASFFIASQLQE---------------QFNKILPEPTEGFA---A 50
Query: 547 DNHVETNSELV-KFFQAADKFRLTSLMNGESIITVDELFSKLQARKCGQVVESAKVSQLM 605
D+ T +ELV KF + V L + + QV+ L
Sbjct: 51 DDEPTTPAELVGKFLG----Y-------------VSSLVEPSKVGQFDQVLNLC----L- 88
Query: 606 SEKKSYEVQVMSQ-----VVAAVTNSCDSSHIIDLGSTITVDELFSKLQARKCGLVVESA 660
+E + + A + D++ ++ I + + AR
Sbjct: 89 ---TEFENCYLEGNDIHALAAKLLQENDTT-LVKTKELIK-----NYITARIMA------ 133
Query: 661 KVSQLMSEKKSYEVQVMSQVVAAVTNSCDSSHIIDLGGGQG----YLSTILALQHGKKTL 716
K+ ++ + S + AV ++ ++ + GGQG Y + L
Sbjct: 134 --------KRPFDKKSNSALFRAVGE--GNAQLVAIFGGQGNTDDYFEELRDL------- 176
Query: 717 SLDYNQVNTHGAAVR------SKKLEDSEKESKGPFQSYAGVINKKLWMRTQNRQTSH-- 768
Y T+ V ++ L + + + + + +N W+ +
Sbjct: 177 ---YQ---TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 769 -ASVEHHGKNWKRKSKAPVVSIKDEELVVCKDKCKQITHFVTPDSDISSILSQAYPQDSL 827
S P+ S ++ Q+ H+V +++ L P +
Sbjct: 231 LLS-------------IPI-SCPLIGVI-------QLAHYV-----VTAKLLGFTPGELR 264
Query: 828 HNVCIMGLHTCGD--LSGTALRL------FTKSS---LQCLVQVGCCYHLLEEEFIRSPF 876
+ G ++ A+ F S + L +G + E + +
Sbjct: 265 SYLK--GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY---EAYPNTSL 319
Query: 877 WKDVDQSLYEHGYGFP---LS-----------------EHL-RSRKFFLG-----RNVRM 910
+ + E+ G P LS HL ++ + +N+ +
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 911 SGTQSPERVIDLKQTQTLPLFYRALLEKYLR----------SKITINDEEPKVVGRLATK 960
SG P+ L Y L LR S+I ++ + K R
Sbjct: 380 SG--PPQ---SL---------YG--LNLTLRKAKAPSGLDQSRIPFSERKLKFSNR---- 419
Query: 961 CSNFV--------EYVHRAVDKLKLDLEVDDEEVTRLFNSHQREYEYLQIYYFLKTALAP 1012
F+ + A D + DL ++ FN+ +QI P
Sbjct: 420 ---FLPVASPFHSHLLVPASDLINKDLVKNNVS----FNAKD-----IQI---------P 458
Query: 1013 VIEALIVLDRVLY-------LREQQKPQIISNLFLSLLTQ-VDDEEVTRLFDSH 1058
V Y LR I + ++ V E T+ +H
Sbjct: 459 V-----------YDTFDGSDLRV-LSGSISERIVDCIIRLPVKWETTTQFKATH 500
Score = 54.3 bits (130), Expect = 2e-07
Identities = 88/595 (14%), Positives = 180/595 (30%), Gaps = 192/595 (32%)
Query: 250 LVHG--EASKMV-----FLKEKIKQEFNLDCFMPANGESCFVQTDMKISIDVSVNLLKEE 302
L HG E +V F+ +++++FN +P E F D + L+ +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKI--LPEPTEG-FAADDEPTT---PAELV-GK 63
Query: 303 AVKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEAC---KEVGISRHIVRFTSNVQISD 359
+ Y S P K Q VL ++ L + + ++ H + + +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVL-----NLCLTEFENCYLEGNDI----H--ALAAKLLQEN 112
Query: 360 SSPINKTLELIYDQLLSYLQDKSQEYKIQLTESSLSIDSVLLSVERIDDKNKRVFVTWPN 419
+ + KT ELI +Y+ + K + S +S L + + N ++ +
Sbjct: 113 DTTLVKTKELI----KNYITARIMA-KRPFDKKS---NSALF--RAVGEGNAQLVAIFGG 162
Query: 420 Q-------DE----------EVGKIVLH---VLKSMSNTQGQPFEFYPYT-DTVFVLSSS 458
Q +E VG ++ L + T + + + + L +
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 459 RYVQGTYYLHTYLTSVTKHQKETMELIKNTIDEMIEFITPNIACVNTHTVHFMVEKL--W 516
YL + S LI + ++ ++ + +
Sbjct: 223 SNTPDKDYLLSIPIS--------CPLI--GVIQLAHYV---VTAKLLGFTPGELRSYLKG 269
Query: 517 ETTIPKAIL-----SQVNNSPSFDSLLEE-----FW----------------KSRQDN-- 548
T + ++ ++ ++ SF + + F+ +D+
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 549 ----------------------HVE-TNSELVKFFQAADKFRLTSLMNGES--IIT---- 579
+V TNS L A + + SL+NG +++
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHL----PAGKQVEI-SLVNGAKNLVVSGPPQ 384
Query: 580 -VDELFSKLQARKCGQVVESAKVSQLMSEKK----------------SYEVQVMSQVVAA 622
+ L L+ K ++ +++ SE+K +
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRI--PFSERKLKFSNRFLPVASPFHSHL----LVPASDL 438
Query: 623 VTNSCDSSHII----DLGSTI--TVDELFSKLQARKCGLVVESAKVSQLMSEKKSYEVQV 676
+ +++ D+ + T D S L+ G + E V ++
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDG--SDLRVLS-GSISERI-VDCIIRL-------- 486
Query: 677 MSQVVAAVTNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVR 731
V T ++HI+D G G S + L H N G VR
Sbjct: 487 --PVKWETTTQFKATHILDF--GPGGASGLGVLTH-----------RNKDGTGVR 526
Score = 54.3 bits (130), Expect = 2e-07
Identities = 53/299 (17%), Positives = 96/299 (32%), Gaps = 85/299 (28%)
Query: 163 PGMLHSGLSL----IIFKK-WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIID 217
GM G+ L + W +N+ GF +I V++ L
Sbjct: 1629 QGM---GMDLYKTSKAAQDVWNRADNHFKDTYGF----SILDIVINNPVNLTIHFGGEKG 1681
Query: 218 VKMAIEY--MSFSAHADAKGIMQLI---------QYC--EPKNVL----------LVHGE 254
++ Y M F D K + I Y K +L +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL--- 1738
Query: 255 ASKMVFLKEKIKQEFNL--DCFMPAN---GE----SCF--VQTDMKISIDVSVNLLKEEA 303
K F E +K + + D A GE + V +SI+ V ++
Sbjct: 1739 MEKAAF--EDLKSKGLIPADATF-AGHSLGEYAALASLADV-----MSIESLVEVVFYRG 1790
Query: 304 VKYNSEPPNPLKERQIHGVLVIKDSSISLMDVDEACKEV--GISRH------IVRF-TSN 354
+ P R +G++ I ++ EA + V + + IV + N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 355 VQ--IS-DSSPINKTLELIYDQLLSYLQDKSQEYKI-QLTESSLSIDSVLLSVERIDDK 409
Q + D ++ +L+++ K Q+ I +L +S LS+E ++
Sbjct: 1851 QQYVAAGDLRALDTVTN-----VLNFI--KLQKIDIIELQKS--------LSLEEVEGH 1894
Score = 38.5 bits (89), Expect = 0.016
Identities = 47/281 (16%), Positives = 74/281 (26%), Gaps = 118/281 (41%)
Query: 755 KKLWMRTQNRQTSHASVEHHGKNWKRKSKAPVVSIKDEELVVCKDKCKQIT-HFVTPDS- 812
+ +W NR +H + +G SI D + + +T HF
Sbjct: 1643 QDVW----NRADNHFK-DTYG-----------FSILD----IVINNPVNLTIHFGGEKGK 1682
Query: 813 ---------------DISSILSQAYPQDSLHNVCIMGLHTCGDLSGTALRLFTKSSLQ-C 856
D + + + + H+ G LS T FT Q
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ---FT----QPA 1735
Query: 857 LVQVGC-CYHLLEEEFIRSPFWKDVDQ-----SLYEHGYG--------FPLSE-----HL 897
L + + L+ + + D SL E Y +
Sbjct: 1736 LTLMEKAAFEDLKSKGL-----IPADATFAGHSLGE--YAALASLADVMSIESLVEVVFY 1788
Query: 898 RSR-------KFFLGR-NVRMSGTQSPERVIDLKQTQTLPLFYRALLEKYLRSKITINDE 949
R + LGR N M +P RV + + E
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAI-NPGRVA-----------------------ASFSQE 1824
Query: 950 E-PKVVGRLATKCSNFVE----------YV----HRAVDKL 975
VV R+ + VE YV RA+D +
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTV 1865
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 34.7 bits (79), Expect = 0.14
Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 36/234 (15%)
Query: 675 QVMSQVVAAV--TNSCDSSHIIDLGGGQGYLSTILALQHGKKTLSLDYN-------QVNT 725
Q V ++ + + ++DL GG G L + + ++ N + N
Sbjct: 77 QSSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALM-SKASQGIYIERNDETAVAARHNI 135
Query: 726 HGAAVRSKKLE----DSEKESKGPFQSYAGVINKKLWMRTQNRQTSHASVEHHGKNWKRK 781
K + D ++ + I ++ R + +
Sbjct: 136 PLLLNEGKDVNILTGDFKEYLPLIKTFHPDYI----YVDPARRS------GADKRVYAIA 185
Query: 782 SKAPVVSIKDEELVVCKDKCKQITHFVTPDSDISSILSQAYPQDSLHNVCIMG------- 834
P + EL C I ++P D+ L LH V G
Sbjct: 186 DCEPDLIPLATEL---LPFCSSILAKLSPMIDLWDTLQSLLHVQELHVVAAHGEVKELLV 242
Query: 835 --LHTCGDLSGTALRLFTKSSLQCLVQVGCCYHLLEEEFIRSPFWKDVDQSLYE 886
+ + + + L + + + EE I P+ +D+ +YE
Sbjct: 243 RMSLNEATIPPEKVPIHAINLLLEDTVIPFIFTMEEERSISIPYTDSIDKYVYE 296
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M
phosphoprotein, cell adhesion, structural protein; 1.94A
{Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 33.3 bits (76), Expect = 0.40
Identities = 24/176 (13%), Positives = 57/176 (32%), Gaps = 27/176 (15%)
Query: 848 LFTKSSLQCLVQVGCCYHLLEEEFIRSPFWKDVDQSLYEHGYGFPLSEHLRSRKFFLGRN 907
+ + + + L+EE+ W D ++L E G + LR + F+
Sbjct: 115 ICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRKFFY---- 170
Query: 908 VRMSGTQSPERVIDLKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLA--TKCSNFV 965
++ +D + L L Y + L ++ ++ +
Sbjct: 171 --------SDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHN 222
Query: 966 EYVHRAVDKLKLDL-------EVDDEEVTRLFNSH------QREYEYLQIYYFLKT 1008
E H+A D + + ++ + + + + Y+++ LKT
Sbjct: 223 EQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKT 278
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 30.9 bits (69), Expect = 0.80
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 740 KESKGPFQSYAGVINKKLWMRTQNRQTSHASVEHHGKNWKRKSKAPVVSIKDEELVVCKD 799
++ + GV K + +R N QT SV+ K +++ ++
Sbjct: 3 QDCPDSSEEVVGVSGKPVQLRPSNIQTKDVSVQWKKTEQGSHRKIEILNWYNDGPSWSNV 62
Query: 800 KCKQITHFVTPDSDISSILSQAYPQDS 826
I F D +S + A QDS
Sbjct: 63 SFSDIYGFDYGDFALS--IKSAKLQDS 87
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 1.2
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 23/44 (52%)
Query: 733 KKLEDSEK----ESKGPFQSYAGVINKKLWMRTQNRQTSHASVE 772
KKL+ S K +S P A I A++E
Sbjct: 23 KKLQASLKLYADDS-AP----ALAIK--------------ATME 47
Score = 30.3 bits (67), Expect = 2.1
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 10/32 (31%)
Query: 166 LHSGLSLIIFKKWAPVENNMLIMPGFCVQGTI 197
L + L K +A ++ P ++ T+
Sbjct: 25 LQASL-----KLYAD-DS----APALAIKATM 46
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 30.8 bits (69), Expect = 1.7
Identities = 12/48 (25%), Positives = 16/48 (33%)
Query: 690 SSHIIDLGGGQGYLSTILALQHGKKTLSLDYNQVNTHGAAVRSKKLED 737
I+ LG G LS L L S+DY+ V +
Sbjct: 43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQ 90
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 30.8 bits (70), Expect = 2.5
Identities = 4/42 (9%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 675 QVMSQVVAAVTNSCDSS-----HIIDLGGGQGYLSTILALQH 711
+M+ + + + ++D+ G +A +
Sbjct: 146 PMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN 187
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase,
metal-binding, tRNA processing, zinc-binding,
catabolism; 1.70A {Homo sapiens}
Length = 368
Score = 30.6 bits (69), Expect = 3.2
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 9 QSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRD 50
+ I GD + + DLLI E+T D
Sbjct: 244 RKICILGDCSGVVGDGG-VKLCFEA--DLLIHEATLDDAQMD 282
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 29.9 bits (67), Expect = 4.6
Identities = 14/115 (12%), Positives = 30/115 (26%), Gaps = 13/115 (11%)
Query: 976 KLDLEVDDEEVTRLFNSHQREYEYLQIYYFLKTALAPVIEALIVLDRVLYLREQQKPQII 1035
+ ++V+++ V F KT + QI
Sbjct: 73 EESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMETSSGMPFE------LWVTELPYQIK 126
Query: 1036 SNLFLSLLT---QVDDEEVTRLFDSHQ----REYEYLQIYYFLKTALAPVIEALI 1083
L L +++E+ ++ ++ E Y I + L
Sbjct: 127 KGQLLQLKIAVPPPNEQEIRSWYNQNKDKVGFEIRYRIISIAPENDSIQEENRLY 181
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 29.5 bits (66), Expect = 5.5
Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 916 PERVIDLKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLA--TKCSNFVEYVHRAVD 973
++ +D + L L Y + L ++ ++ + E H+
Sbjct: 6 SDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGF 65
Query: 974 KLKLDL-------EVDDEEVTRLFNSHQR------EYEYLQIYYFLKT 1008
D + + ++ + + Y+++ LKT
Sbjct: 66 LELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKT 113
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 29.3 bits (66), Expect = 6.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 691 SHIIDLGGGQGYLSTILALQH 711
+IDL GG G + +H
Sbjct: 181 RTVIDLAGGHGTYLAQVLRRH 201
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 29.2 bits (66), Expect = 7.0
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 2 FQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCR-PDLLITESTY 44
++ GN +VY+ D + P+ +I + DL I E
Sbjct: 165 MRITAGNDIVVYSADSSYIPE------FIPFTKDADLFICECNM 202
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 29.1 bits (66), Expect = 8.0
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 678 SQVVAAVTNSCD--SSHIIDLGGGQGYLSTILALQH 711
+ + D +D+GGG G L+ +
Sbjct: 154 NLAFHEIPRLLDFRGRSFVDVGGGSGELTKAILQAE 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.387
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,244,484
Number of extensions: 982215
Number of successful extensions: 2314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2249
Number of HSP's successfully gapped: 42
Length of query: 1101
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 997
Effective length of database: 3,798,009
Effective search space: 3786614973
Effective search space used: 3786614973
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.3 bits)