RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9966
(1101 letters)
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 197 bits (502), Expect = 8e-55
Identities = 42/352 (11%), Positives = 99/352 (28%), Gaps = 74/352 (21%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAA--------WIDKCRPDLLITESTYATTIRDSK 52
++ + ++ +VY +N T D L AA + I +
Sbjct: 164 IWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPF 223
Query: 53 RCRERDFLKKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNL-----QAPIYFAV 107
+ R + F + + + G V+IPV G+ +L + Q P+
Sbjct: 224 KKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILS 283
Query: 108 GLTEKATNYYKMFITWTNQKIRKTFVQR---NMFDFKHIRPFDKS--FIDNPGPMVVFAT 162
+ Y K + W + + KT+ R + F+ PG + F +
Sbjct: 284 YARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIGSRIKIIAPNELSKYPGSKICFVS 343
Query: 163 PGMLHSGLSLIIFKKWAPVENNMLIM--PGFCVQGTIGHKVLSGVKKLE----------- 209
L + K E LI+ P F ++ + +
Sbjct: 344 EVG---ALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKS 400
Query: 210 ---------------------------------------FENKQIIDVKMAIEYMSFSAH 230
+ + +K ++ ++ +
Sbjct: 401 FLCDNYISIDTIKEEPLSKEETNFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSL 460
Query: 231 ADAKGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGESC 282
D + + + + ++L + + + K+ ++ N++ +
Sbjct: 461 VDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKK-NIEVVNMPLNKIV 511
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 166 bits (421), Expect = 4e-45
Identities = 74/288 (25%), Positives = 135/288 (46%), Gaps = 13/288 (4%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
+ +++VY+GD L + DL++ E TY R R+FL
Sbjct: 147 FVVAQGEGRTLVYSGDLGNREKDVLPDPSLP-PLADLVLAEGTYGDRPHRPYRETVREFL 205
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMNLQAPIYFAVGLTEKATNYYKMF 120
+ + + + +GGKVLIP FA+ RAQE+ +L T+ R+ +APIY + + + Y
Sbjct: 206 EILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLP-RAPIYLDSPMAGRVLSLYPRL 264
Query: 121 ITWTNQKIRKTFVQ-RNMFDFKHIRPFD-----KSFIDNPGPMVVFATPGMLHSGLSLII 174
+ + +++++ F+Q +N F + + K+ PGPMVV A GML G L
Sbjct: 265 VRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHH 324
Query: 175 FKKWAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYM-SFSAHADA 233
K N L+ G+ QG +G ++++ + +++ ++ ++ + FS HA
Sbjct: 325 LKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEV-PLRASVHTLGGFSGHAGQ 383
Query: 234 KGIMQLIQYCEPKNVLLVHGEASKMVFLKEKIKQEFNLDCFMPANGES 281
++ +Q V+LVHGE K++ L + + + + GE
Sbjct: 384 DELLDWLQ--GEPRVVLVHGEEEKLLALGKLLALR-GQEVSLARFGEG 428
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 165 bits (418), Expect = 2e-44
Identities = 114/291 (39%), Positives = 175/291 (60%), Gaps = 9/291 (3%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 60
MF +++ ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 156 MFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFC 215
Query: 61 KKVHECVDRGGKVLIPVFALGRAQELCILLETYWERMN--LQAPIYFAVGLTEKATNYYK 118
VH+ V+RGG+ LIPVFALGRAQEL ++L+ YW+ PIY+A L +K Y+
Sbjct: 216 NTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQ 275
Query: 119 MFITWTNQKIRKTFVQRNMFDFKHIRP-FDKSFIDNPGPMVVFATPGMLHSGLSLIIFKK 177
++ N KIRK N F FKHI D+ GP VV A+PGM+ SGLS +F+
Sbjct: 276 TYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES 335
Query: 178 WAPVENNMLIMPGFCVQGTIGHKVLSGVKKLEFENKQIIDVKMAIEYMSFSAHADAKGIM 237
W + N +I+ G+CV+GT+ ++S +++ + Q + +KM+++Y+SFSAH D +
Sbjct: 336 WCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTS 395
Query: 238 QLIQYCEPKNVLLVHGEASKMVFLKEKIKQEF------NLDCFMPANGESC 282
+ I+ +P +V+LVHGE ++M LK + +E+ +++ P N E+
Sbjct: 396 EFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAV 446
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
{Enterococcus faecalis [TaxId: 1351]}
Length = 183
Score = 33.1 bits (74), Expect = 0.095
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 1 MFQVKVGNQSIVYTGDYNMTPDR-HLGAAWIDKCR-PDLLITESTYA 45
++ + I YTGD + A+ +K + +LL+ E
Sbjct: 119 ALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSI 165
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 77
Score = 28.8 bits (65), Expect = 0.57
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 952 KVVGRLATKCSNFVEYVHRAVDKLKLDLEVDDEE 985
++ G C + AV +L +D E + +
Sbjct: 5 QIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK 38
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia
coli [TaxId: 562]}
Length = 124
Score = 30.1 bits (68), Expect = 0.59
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 520 IPKAILSQVNNSP--SFDSLLEEFWKSRQDNHVETNSELVKFFQAADKFRLT 569
+P I +++ + SFD ++FW+ V + EL K F + R+
Sbjct: 28 VPDRIANKLRDKEFKSFDDFRKKFWEE-----VSKDPELSKQFSRNNNDRMK 74
>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia
coli [TaxId: 562]}
Length = 130
Score = 30.1 bits (68), Expect = 0.68
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 520 IPKAILSQVNNSP--SFDSLLEEFWKSRQDNHVETNSELVKFFQAADKFRLT 569
IP I ++ + SFD + W+ V + EL K ++K ++
Sbjct: 31 IPDRIADKLRDKEFKSFDDFRKAVWEE-----VSKDPELSKNLNPSNKSSVS 77
>d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025
{Bacteroides fragilis [TaxId: 817]}
Length = 459
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 88 ILLETYWERMNLQAPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMFDFKHIRPFD 147
+L Y E + A ++ A YY+ IR +F + +
Sbjct: 300 TMLMGYAELQQILAEAVVRGWISGNAQTYYEKG-------IRASFSFYETHAKDYAGYLN 352
Query: 148 KSFIDN--PGPMVVFATPGMLHSGLSLIIFKKW 178
++ + P+V F + II +K+
Sbjct: 353 ENAVAQYLKEPLVDFTQASGTEEQIERIIMQKY 385
>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 336
Score = 29.0 bits (65), Expect = 3.7
Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 394 LSIDSVLLSVERIDDKNKRVFVTWPNQDEEVGKIVLHVLKSMSNTQGQPFE--FYPYTDT 451
D+ + + FV+ + ++ L++ ++ +PF F PYT
Sbjct: 251 FDPDTAAVQPYQDQTYQPVYFVS-ESFND-----AKDKLRNYASRIQRPFSVKFDPYTLA 304
Query: 452 VFVLSSSRYVQGTYYLHTYLTSVTKHQKETMELIKNTIDEM 492
+ VL S + + ++ + + + + +
Sbjct: 305 IDVLDSPH----------TIQRSLEGVQDELHTLAHALSAI 335
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 28.1 bits (61), Expect = 5.6
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 691 SHIIDLGGGQGYLSTILALQHGKKTLSLDYNQ 722
++D+ G G+++ A KK ++ D +
Sbjct: 17 EEVLDVATGGGHVANAFA-PFVKKVVAFDLTE 47
>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli
[TaxId: 562]}
Length = 186
Score = 27.7 bits (61), Expect = 6.1
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 1027 REQQKPQIISN--LFLSLLTQVDDEEVTRLFDSHQREYEYLQIYYFLKTALAPVIEALIV 1084
+ QKP I++ + S L V+ ++ + +R YE ++ + P+++ ++
Sbjct: 4 KSLQKPTILNVETVARSRLFTVESVDL-EFSNGVRRVYERMRPTNREAVMIVPIVDDHLI 62
Query: 1085 LDR 1087
L R
Sbjct: 63 LIR 65
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 26.4 bits (58), Expect = 7.7
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 922 LKQTQTLPLFYRALLEKYLRSKITINDEEPKVVGRLA--TKCSNFVEYVHRA--VDKLKL 977
L + T L + + ++ + ++G ++ ++ +H V KL
Sbjct: 6 LTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKL 65
Query: 978 DLEVDDEEVTRLFNSHQR---------EYEYLQI 1002
E ++ H+ + E+L+
Sbjct: 66 APNQTKELEEKVMELHKSYRSMTPAQADLEFLEN 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.387
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,952,139
Number of extensions: 186720
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 23
Length of query: 1101
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1006
Effective length of database: 1,103,246
Effective search space: 1109865476
Effective search space used: 1109865476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)