BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9968
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 65 VQALDRDDPEREKEIY-ITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
+ LDR+ P + IY T +A DNG P +S T++I + DINDN P
Sbjct: 397 IAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAP 444
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 27/123 (21%)
Query: 1 MQVHATDVDPPSN-GGTIQYRII-KAPGERAK--FSIDKETG-IVKTLYALDRDDPEREK 55
M V A D D P+ G ++YRI+ +AP + F+I+ ETG I+ LDR+ ++
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
I TD+ E N T LS+ T ITV D+NDN P F
Sbjct: 188 LIIQATDM----------------------EGNPTYGLSNTATAVITVTDVNDNPPEFTA 225
Query: 116 VQY 118
+ +
Sbjct: 226 MTF 228
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 31/124 (25%)
Query: 1 MQVHATDVDPPSN--GGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYA-LDRDDPERE 54
M+V ATD D N I Y I+ E + F+++++TG++ L + LDR
Sbjct: 128 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR------ 181
Query: 55 KEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFD 114
E Y T + VQA D + G LS ITV+DINDN P+F+
Sbjct: 182 -ESYPTYTLVVQAAD---------------LQGEG---LSTTAKAVITVKDINDNAPVFN 222
Query: 115 RVQY 118
Y
Sbjct: 223 PSTY 226
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 1 MQVHATDVDPPSN--GGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYA-LDRDDPERE 54
M+V ATD D N I Y I+ E + F+++++TG++ L + LDR
Sbjct: 130 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR------ 183
Query: 55 KEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFD 114
E Y T + VQA D + G LS ITV+DINDN P+F+
Sbjct: 184 -ESYPTYTLVVQAAD---------------LQGEG---LSTTAKAVITVKDINDNAPVFN 224
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 29/113 (25%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGE--RAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
+Q+ A D+D NG I+Y + A E R +D+ +G + L+ +DR
Sbjct: 34 LQLRAADLDVGVNG-QIEY-VFGAATESVRRLLRLDETSGWLSVLHRIDR---------- 81
Query: 59 ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
E ++ TV+A D G P +D T+ + ++D NDN P
Sbjct: 82 ---------------EEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 1 MQVHATDVDPPSNGGT--IQYRIIKAPGERAKFSIDKETGIVKT-LYALDRDDPEREKEI 57
+QV ATD D P+ G + + Y I++ + FS++ ETGI+KT L +DR++ E+ + +
Sbjct: 126 VQVTATDADDPTYGNSAKVVYSILQG---QPYFSVESETGIIKTALLNMDRENREQYQVV 182
Query: 58 YITTDIRVQ 66
D+ Q
Sbjct: 183 IQAKDMGGQ 191
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 35/106 (33%)
Query: 15 GTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRD--- 71
G+++Y I+ G F I++ TG ++ LDR+ EK +YI +R QA++R
Sbjct: 33 GSLKY-ILSGDGAGDLFIINENTGDIQATKRLDRE----EKPVYI---LRAQAVNRRTGR 84
Query: 72 --DPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
+PE E I + DINDNEP+F +
Sbjct: 85 PVEPESE----------------------FIIKIHDINDNEPIFTK 108
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 31/121 (25%)
Query: 2 QVHATDVDPP--SNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYI 59
V ATD D P N + Y I++ + FSI+ ET I+KT
Sbjct: 127 NVTATDADDPVYGNSAKLVYSILEG---QPYFSIEPETAIIKT----------------- 166
Query: 60 TTDIRVQALDRDDPEREKEIYITVIAEDNG--TPQLSDACTMKITVEDINDNEPMFDRVQ 117
AL D E ++E + + A+D G + LS T+ +T+ D+NDN P F +
Sbjct: 167 -------ALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSL 219
Query: 118 Y 118
Y
Sbjct: 220 Y 220
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 29 AKFSIDKETGIVKTLYALDRDDPEREKEIY-ITTDIRVQALDRDDPEREKEIYITVIAED 87
+ D + G K Y L D +I IT DI A+ R D E + E +T A D
Sbjct: 22 GRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDI--HAIKRLDREEKAEYTLTAQAVD 79
Query: 88 NGTPQ-LSDACTMKITVEDINDNEPMF 113
T + L I V+DINDN P F
Sbjct: 80 FETNKPLEPPSEFIIKVQDINDNAPEF 106
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIK--APGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
+Q+HATD D SN I+Y AP + F+++ TG++ +LDR++ K
Sbjct: 34 IQLHATDADIGSNA-EIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTV 92
Query: 59 ITTD 62
+ +D
Sbjct: 93 LASD 96
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 49/123 (39%), Gaps = 29/123 (23%)
Query: 1 MQVHATDVDPP--SNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREK 55
M V ATD D S G + Y I+K E F+I++ETG++ +
Sbjct: 283 MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT---------- 332
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
LDR E+ E +TV A D LS I + D NDN P+FD
Sbjct: 333 -----------GLDR---EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 378
Query: 116 VQY 118
Y
Sbjct: 379 KTY 381
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 49/123 (39%), Gaps = 29/123 (23%)
Query: 1 MQVHATDVDPP--SNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREK 55
M V ATD D S G + Y I+K E F+I++ETG++ +
Sbjct: 134 MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT---------- 183
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
LDR E+ E +TV A D LS I + D NDN P+FD
Sbjct: 184 -----------GLDR---EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 229
Query: 116 VQY 118
Y
Sbjct: 230 KTY 232
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 31/115 (26%)
Query: 1 MQVHATDVDPPSN--GGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYA-LDRDDPERE 54
M+V ATD D N I Y I+ E + F+++++TG++ L + LDR
Sbjct: 129 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR------ 182
Query: 55 KEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDN 109
E Y T + VQA D + G LS ITV+DINDN
Sbjct: 183 -ESYPTYTLVVQAADL---------------QGEG---LSTTAKAVITVKDINDN 218
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 27/110 (24%)
Query: 1 MQVHATDVDPPSN-GGTIQYRII-KAPGERAK--FSIDKETG-IVKTLYALDRDDPEREK 55
M V A D D P+ G ++YRI+ +AP + F+I+ ETG I+ LDR+ ++
Sbjct: 128 MTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
I TD+ E N T LS+ T ITV D
Sbjct: 188 LIIQATDM----------------------EGNPTYGLSNTATAVITVTD 215
>pdb|1UDE|A Chain A, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii
Ot3
pdb|1UDE|B Chain B, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii
Ot3
pdb|1UDE|C Chain C, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii
Ot3
Length = 195
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 7 DVDPPSNGGTIQYRIIKAP-GERAKFSIDKETGIVKTLYALDR 48
D++P N + Y +I+ P G R K+ +DKETG++K LDR
Sbjct: 23 DLEPGPNVPEVVYALIEIPKGSRNKYELDKETGLLK----LDR 61
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 27/110 (24%)
Query: 1 MQVHATDVDPPSN-GGTIQYRII-KAPGERAK--FSIDKETG-IVKTLYALDRDDPEREK 55
M V A D D P+ G ++YRI+ +AP + F+I+ ETG I+ LDR+ ++
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
I TD+ E N T LS+ T ITV D
Sbjct: 188 LIIQATDM----------------------EGNPTYGLSNTATAVITVTD 215
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 29/105 (27%)
Query: 1 MQVHATDVDPPSNGGTIQ--YRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
+QV A+D D P+ G + + Y I++ + FS++ +TGI++T
Sbjct: 127 IQVTASDADDPTYGNSAKLVYSILEG---QPYFSVEAQTGIIRT---------------- 167
Query: 59 ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITV 103
AL D E ++E ++ + A+D G + T K+T+
Sbjct: 168 --------ALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTI 204
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 27/108 (25%)
Query: 6 TDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRV 65
+D+D S G I+Y I+ G F ID ++G + LDR+ E+ Y +
Sbjct: 27 SDID--SGDGNIKY-ILSGEGAGTIFVIDDKSGNIHATKTLDRE----ERAQYT---LMA 76
Query: 66 QALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMF 113
QA+DRD L + V+DINDN P F
Sbjct: 77 QAVDRDTNR-----------------PLEPPSEFIVKVQDINDNPPEF 107
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 24/98 (24%)
Query: 22 IKAPGERA-KFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIY 80
+KA G+ A F+I +GIVK LD +D R+ +Y
Sbjct: 255 LKAQGQGAGTFNIGPTSGIVKLAKELDFED-----------------------LRQPHVY 291
Query: 81 ITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
++ + S + + I V D+NDN P F+ Y
Sbjct: 292 SLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDY 329
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 15 GTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDR 70
G+I+Y I+ G F+ID TG + + LDR+ E+ Y +R QALDR
Sbjct: 34 GSIKY-ILSGEGAGIVFTIDDTTGDIHAIQRLDRE----ERSQYT---LRAQALDR 81
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
pdb|3HHE|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
Length = 255
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 12 SNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYAL 46
GG + + I A RA F I ET +VKTL A
Sbjct: 118 GGGGALLHEKIVASASRAMFVIADETKMVKTLGAF 152
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus
Pfu-264096-001
Length = 186
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 7 DVDPPSNGGTIQYRIIKAP-GERAKFSIDKETGIVKTLYALDR 48
D++P + + Y II+ P G R K+ +DK+TG++K LDR
Sbjct: 14 DLEPGPDVPEVVYAIIEIPKGSRNKYELDKKTGLLK----LDR 52
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 65 VQALDRDDPEREKEIYITV-IAEDNGTPQLSDACTMKITVEDINDNEPMF 113
+ A +R D E++ E +T I + L I V DINDN P+F
Sbjct: 55 IYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIF 104
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 17 IQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKE 56
+Q RI K+ G + F GIV ++Y L R+ PE E
Sbjct: 101 VQERIAKSHGSQCGFCT---PGIVMSMYTLLRNQPEPTME 137
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 17 IQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKE 56
+Q RI K+ G + F GIV ++Y L R+ PE E
Sbjct: 101 VQERIAKSHGSQCGFCT---PGIVMSMYTLLRNQPEPTME 137
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 99 MKITVEDINDNEPMF 113
++I V DINDNEP+F
Sbjct: 106 LRIKVLDINDNEPVF 120
>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|B Chain B, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|C Chain C, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|D Chain D, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|E Chain E, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|F Chain F, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3Q4W|A Chain A, The Structure Of Archaeal Inorganic Pyrophosphatase In
Complex With Substrate
pdb|3Q5V|A Chain A, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q5V|B Chain B, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q9M|A Chain A, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|B Chain B, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|C Chain C, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q3L|A Chain A, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|B Chain B, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|C Chain C, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|D Chain D, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|E Chain E, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|F Chain F, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3R5U|A Chain A, The Structure Of Manganese Bound Thermococcus
Thioreducens Inorganic Pyrophosphatase
pdb|3R5U|B Chain B, The Structure Of Manganese Bound Thermococcus
Thioreducens Inorganic Pyrophosphatase
pdb|3R5V|A Chain A, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|B Chain B, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|C Chain C, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|D Chain D, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|E Chain E, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|F Chain F, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
Length = 178
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 7 DVDPPSNGGTIQYRIIKAP-GERAKFSIDKETGIVKTLYALDR 48
+++P + Y +I+ P G R K+ +DK+TG++K LDR
Sbjct: 6 ELEPGPEVPEVVYALIEIPKGSRNKYELDKKTGLLK----LDR 44
>pdb|3R6E|A Chain A, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|B Chain B, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|C Chain C, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|D Chain D, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|E Chain E, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|F Chain F, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
Length = 178
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 5/33 (15%)
Query: 17 IQYRIIKAP-GERAKFSIDKETGIVKTLYALDR 48
+ Y +I+ P G R K+ +DK+TG++K LDR
Sbjct: 16 VVYALIEIPKGSRNKYELDKKTGLLK----LDR 44
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 24/89 (26%)
Query: 22 IKAPGERA-KFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIY 80
+KA G+ A F+I +GIVK LD +D R+ +Y
Sbjct: 250 LKAQGQGAGTFNIGPTSGIVKLAKELDFED-----------------------LRQPHVY 286
Query: 81 ITVIAEDNGTPQLSDACTMKITVEDINDN 109
++ + S + + I V D+NDN
Sbjct: 287 SLIVTATEDSGGFSTSVDLTIRVTDVNDN 315
>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From
Thermococcus Thioreducens Bound To Hydrolyzed Product
At 0.99 Angstrom Resolution
Length = 178
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 7 DVDPPSNGGTIQYRIIKAP-GERAKFSIDKETGIVKTLYALDR 48
+++P + Y +I+ P G R K+ +DK TG++K LDR
Sbjct: 6 ELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLK----LDR 44
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 34 DKETGIVKTLYALDRDDP-------EREKEIYITTDIRVQALDRDDPEREKEIYITVIAE 86
DKET + ++ D P ERE T Q LDR+ K I +
Sbjct: 29 DKETKVFYSITGQGADKPPVGVFIIERETGWLKVT----QPLDRE--AIAKYILYSHAVS 82
Query: 87 DNGTPQLSDACTMKITVEDINDNEPMF 113
NG ++D + ITV D NDN P F
Sbjct: 83 SNGE-AVADPMEIVITVTDQNDNRPEF 108
>pdb|2DF4|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2F2A|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
pdb|2G5H|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|B Chain B, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|B Chain B, The High Resolution Structure Of Gatcab
Length = 483
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 84 IAEDNGTPQLSDACT-MKITVEDINDNE 110
I EDNG Q+SD T +K E +++NE
Sbjct: 403 IMEDNGLVQISDEATLLKFVNEALDNNE 430
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,758,323
Number of Sequences: 62578
Number of extensions: 148150
Number of successful extensions: 313
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 69
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)