RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9968
(118 letters)
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins
are glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers.
Length = 98
Score = 69.6 bits (171), Expect = 6e-17
Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 27/109 (24%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ V ATD D NG + Y I+ + E FSID TG + T LDR
Sbjct: 17 LTVSATDPDSGENG-EVTYSIV-SGNEDGLFSIDPSTGEITTAKPLDR------------ 62
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDN 109
E + +TV A D G P LS T+ ITV D+NDN
Sbjct: 63 -------------EEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when
bound to calcium.
Length = 81
Score = 65.8 bits (161), Expect = 1e-15
Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 27/108 (25%)
Query: 4 HATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDI 63
ATD D NG + Y I+ + FSID ETG + T LDR
Sbjct: 1 SATDADSGENG-KVTYSILSGNDDG-LFSIDPETGEITTTKPLDR--------------- 43
Query: 64 RVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
E + E +TV A D G P LS T+ ITV D+NDN P
Sbjct: 44 ----------EEQPEYTLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain.
Length = 92
Score = 47.7 bits (114), Expect = 2e-08
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ V ATD D NG I Y I+ G F ID +TG + T LDR+ Y
Sbjct: 16 LTVTATDADLGPNGR-IFYSILG-GGPGGWFRIDPDTGDLSTTKPLDRE----SIGEYE- 68
Query: 61 TDIRVQALDRDDPEREKEIYITV 83
+ V A D P +T+
Sbjct: 69 --LTVLATDSGGPPLSSTTTVTI 89
>gnl|CDD|233994 TIGR02746, TraC-F-type, type-IV secretion system protein TraC. The
protein family described here is common among the F, P
and I-like type IV secretion systems. Gene symbols
include TraC (F-type), TrbE/VirB4 (P-type) and TraU
(I-type). The protein conyains the Walker A and B motifs
and so is a putative nucleotide triphosphatase.
Length = 797
Score = 27.7 bits (62), Expect = 1.5
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 39 IVKTLYALDRDDPEREKEIY-ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQ 92
+V+ + D D Y +R Q +D D E + V EDN
Sbjct: 162 LVREMLNPDPDSIHPWPISYDPNQLLRDQIVDPDTDLEVHEGGLEVDHEDNQGEV 216
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily. Aldose
1-epimerases or mutarotases are key enzymes of
carbohydrate metabolism; they catalyze the
interconversion of the alpha- and beta-anomers of hexose
sugars such as glucose and galactose. This
interconversion is an important step that allows anomer
specific metabolic conversion of sugars. Studies of the
catalytic mechanism of the best known member of the
family, galactose mutarotase, have shown a glutamate and
a histidine residue to be critical for catalysis; the
glutamate serves as the active site base to initiate the
reaction by removing the proton from the C-1 hydroxyl
group of the sugar substrate and the histidine as the
active site acid to protonate the C-5 ring oxygen.
Length = 284
Score = 26.7 bits (59), Expect = 2.7
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSI 33
A D +NGG +K PGE FSI
Sbjct: 255 MTSAPDAFFNNNGG---LITLKPPGETRTFSI 283
>gnl|CDD|100115 cd05804, StaR_like, StaR_like; a well-conserved protein found in
bacteria, plants, and animals. A family member from
Streptomyces toyocaensis, StaR is part of a gene cluster
involved in the biosynthesis of glycopeptide antibiotics
(GPAs), specifically A47934. It has been speculated that
StaR could be a flavoprotein hydroxylating a tyrosine
sidechain. Some family members have been annotated as
proteins containing tetratricopeptide (TPR) repeats,
which may at least indicate mostly alpha-helical
secondary structure.
Length = 355
Score = 26.5 bits (59), Expect = 4.0
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 67 ALDRDDPEREKEIYITVIAEDNGTP---QLSDACTM 99
L+R D E IY T IA + L DA ++
Sbjct: 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASL 231
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 26.1 bits (58), Expect = 4.6
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 14 GGTIQYRII----KAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYI 59
G I PG ++ + G V+ L R D E E Y
Sbjct: 798 DGEETIDIGGLENLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYK 847
>gnl|CDD|218234 pfam04733, Coatomer_E, Coatomer epsilon subunit. This family
represents the epsilon subunit of the coatomer complex,
which is involved in the regulation of intracellular
protein trafficking between the endoplasmic reticulum
and the Golgi complex.
Length = 288
Score = 26.3 bits (58), Expect = 4.9
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 65 VQALDRDDPEREKEIYITVIAEDNGTP---------QLSDACTMKITVEDINDNEPMFDR 115
+ALD+D + E I + V A G P QL + V+D+N+ E FDR
Sbjct: 223 KEALDKDAKDPETLINLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKDLNEKEAEFDR 282
Query: 116 V 116
Sbjct: 283 A 283
>gnl|CDD|189721 pfam00791, ZU5, ZU5 domain. Domain present in ZO-1 and Unc5-like
netrin receptors Domain of unknown function.
Length = 103
Score = 25.3 bits (56), Expect = 6.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 75 REKEIYITVIAEDNGTPQLSDACTM 99
EIY+TV ++ P L + T+
Sbjct: 36 TRYEIYLTVNQRESTPPPLEEGETL 60
>gnl|CDD|183614 PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate
synthase/chorismate mutase; Reviewed.
Length = 360
Score = 25.7 bits (57), Expect = 7.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 27 ERAKFSIDKETGIVKTLYALDRDDPEREKE 56
+R + + +E G KT R DP RE+E
Sbjct: 26 KRGE--LVQEIGEEKTKQGTKRYDPVRERE 53
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.135 0.381
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,289,038
Number of extensions: 575041
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 35
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)