RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9968
(118 letters)
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 78.4 bits (193), Expect = 2e-18
Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 29/123 (23%)
Query: 1 MQVHATDVDPPSNG--GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREK 55
M V ATD D + G + Y I+K F+I++ETG++ +
Sbjct: 283 MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI------------ 330
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
LDR E+ E +TV A D LS I + D NDN P+FD
Sbjct: 331 ---------GTGLDR---EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 378
Query: 116 VQY 118
Y
Sbjct: 379 KTY 381
Score = 72.2 bits (177), Expect = 3e-16
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 24/118 (20%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ + A D D + Y I P +++K+ GIV LDR+ + Y
Sbjct: 507 ISLVAQDPDKQQIQ-KLSYFIGNDPAR--WLTVNKDNGIVTGNGNLDRESEYVKNNTY-- 561
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
+ ++ D+G + T+ + V D+NDN P+ +
Sbjct: 562 -------------------TVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVF 600
Score = 59.9 bits (145), Expect = 5e-12
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 29/121 (23%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
++ + + Y I + F I+ ETG + LDR+ E +
Sbjct: 174 KRLVQIKSNKDRFN-KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDRE----EYDK 228
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
Y+ + A+ + E+ + IT I V D NDN P F +
Sbjct: 229 YV---LSSHAVSENGSPVEEPMEIT------------------INVIDQNDNRPKFTQDV 267
Query: 118 Y 118
+
Sbjct: 268 F 268
Score = 51.0 bits (122), Expect = 7e-09
Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 34/125 (27%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSI----DKETGIVKTLYALDRDDPEREKE 56
++ TD+D P I+ E F+I + GI+ T LD
Sbjct: 395 QRLSVTDLDMPGTPAWQAVYKIR-VNEGGFFNITTDPESNQGILTTAKGLDF-------- 445
Query: 57 IYITTDIRVQALDRDDPEREKEIYITVIAED---NGTPQLSDACTMKITVEDINDNEPMF 113
E K+ + + E+ P + T+ +TVED+N+ P F
Sbjct: 446 -----------------ELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFF 487
Query: 114 DRVQY 118
Sbjct: 488 VPAVS 492
Score = 49.9 bits (119), Expect = 2e-08
Identities = 11/118 (9%), Positives = 23/118 (19%), Gaps = 28/118 (23%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ +D D P N + + + + G L +
Sbjct: 610 QVLTISDADIPPNTYPYKVSLSHGS-DLTWKAELDSKGTSMLLSPTQQ------------ 656
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
++ + I V+ D + TV
Sbjct: 657 -------------LKKGDYSIYVLLSDAQNNPQLT--VVNATVCSCEGKAIKCQEKLV 699
Score = 40.6 bits (95), Expect = 3e-05
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 84 IAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
A L + D++ +P F +Y
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEY 42
Score = 37.9 bits (88), Expect = 3e-04
Identities = 10/115 (8%), Positives = 28/115 (24%), Gaps = 18/115 (15%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+V+ +D + Y + + +F + G V + +
Sbjct: 58 GKVNFSDCTTRKH---GLYDVGDS-----RFRVL-PDGTVLVKRHVKLHKDTK------- 101
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
+ D + I + +G S + + + +
Sbjct: 102 --FTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKK 154
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 76.2 bits (188), Expect = 1e-17
Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 29/123 (23%)
Query: 1 MQVHATDVDPPSNG--GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREK 55
M V ATD D + G + Y I+K F+I++ETG++ +
Sbjct: 134 MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI------------ 181
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
LDR E+ E +TV A D LS I + D NDN P+FD
Sbjct: 182 ---------GTGLDR---EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 229
Query: 116 VQY 118
Y
Sbjct: 230 KTY 232
Score = 70.8 bits (174), Expect = 9e-16
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 24/118 (20%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ + A D D + Y I P +++K+ GIV LDR+ + Y
Sbjct: 358 ISLVAQDPDKQQIQ-KLSYFIGNDPAR--WLTVNKDNGIVTGNGNLDRESEYVKNNTY-- 412
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
+ ++ D+G + T+ + V D+NDN P+ +
Sbjct: 413 -------------------TVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVF 451
Score = 60.8 bits (148), Expect = 3e-12
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 29/121 (23%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
++ + + Y I + F I+ ETG + LDR+ E +
Sbjct: 25 KRLVQIKSNKDRFN-KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDRE----EYDK 79
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
Y+ + A+ + E+ + IT I V D NDN P F +
Sbjct: 80 YV---LSSHAVSENGSPVEEPMEIT------------------INVIDQNDNRPKFTQDV 118
Query: 118 Y 118
+
Sbjct: 119 F 119
Score = 54.2 bits (131), Expect = 5e-10
Identities = 11/112 (9%), Positives = 23/112 (20%), Gaps = 28/112 (25%)
Query: 2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITT 61
+ +D D P N + + + + G L +
Sbjct: 462 VLTISDADIPPNTYPYKVSLSHGS-DLTWKAELDSKGTSMLLSPTQQ------------- 507
Query: 62 DIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMF 113
++ + I V+ D + TV
Sbjct: 508 ------------LKKGDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAIKC 545
Score = 51.2 bits (123), Expect = 6e-09
Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 34/125 (27%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSI----DKETGIVKTLYALDRDDPEREKE 56
++ TD+D P I+ E F+I + GI+ T LD
Sbjct: 246 QRLSVTDLDMPGTPAWQAVYKIRVN-EGGFFNITTDPESNQGILTTAKGLDF-------- 296
Query: 57 IYITTDIRVQALDRDDPEREKEIYITVIAED---NGTPQLSDACTMKITVEDINDNEPMF 113
E K+ + + E+ P + T+ +TVED+N+ P F
Sbjct: 297 -----------------ELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFF 338
Query: 114 DRVQY 118
Sbjct: 339 VPAVS 343
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 75.8 bits (187), Expect = 1e-17
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 29/123 (23%)
Query: 1 MQVHATDVDPPSNG--GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREK 55
M+V ATD D N I Y I+ + F+++++TG++ L
Sbjct: 128 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL------------ 175
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
LDR E + V A D LS ITV+DINDN P+F+
Sbjct: 176 ---------TSGLDR---ESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNP 223
Query: 116 VQY 118
Y
Sbjct: 224 STY 226
Score = 69.3 bits (170), Expect = 3e-15
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 23/118 (19%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
A + D + I YRI + I+ ETG + T +DR+D E K
Sbjct: 352 TSYTAREPDTFMDQ-KITYRIWRDTAN--WLEINPETGAIFTRAEMDREDAEHVKNSTYV 408
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
+IA D+G+P + T+ + + D+NDN P+ +
Sbjct: 409 --------------------ALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNM 446
Score = 63.1 bits (154), Expect = 4e-13
Identities = 12/116 (10%), Positives = 20/116 (17%), Gaps = 27/116 (23%)
Query: 3 VHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTD 62
+ D D P N + + L
Sbjct: 458 ITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKD-------------- 503
Query: 63 IRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
E I + DN T+ + V D + +
Sbjct: 504 -----------LEIGEYKIHLKLADNQNKDQV--TTLDVHVCDCEGTVNNCMKAHH 546
Score = 60.8 bits (148), Expect = 2e-12
Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 29/121 (23%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAK---FSIDKETGIVKTLYALDRDDPEREKEI 57
+ + + Y I ++ F I++ETG +K LDR+
Sbjct: 19 KNLVQIKSNRDKET-KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE----AIAK 73
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
YI + A+ + E + I ITV D NDN P F +
Sbjct: 74 YI---LYSHAVSSNGEAVEDPMEIV------------------ITVTDQNDNRPEFTQEV 112
Query: 118 Y 118
+
Sbjct: 113 F 113
Score = 50.8 bits (122), Expect = 8e-09
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 32/124 (25%)
Query: 1 MQVHATDVDPPSNGGT-IQYRIIKAPGERAKFSIDKET--GIVKTLYALDRDDPEREKEI 57
+ TD D P+ Y ++ P ++ D T GI+KT
Sbjct: 240 ATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKT--------------- 284
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGT---PQLSDACTMKITVEDINDNEPMFD 114
+ LD E +++ + V E+ + T+ + V D+N+ P+F
Sbjct: 285 -------AKGLDF---EAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFM 333
Query: 115 RVQY 118
+
Sbjct: 334 PAER 337
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 70.8 bits (174), Expect = 2e-17
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 29/116 (25%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYALDRDDPEREKEI 57
++ N +++Y + + F I+ +G + LDR+
Sbjct: 21 QELVRIRSGRDKNL-SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRE----LIAR 75
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMF 113
+ + A D Q+ + + I V D+NDN P F
Sbjct: 76 FH---------------------LRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 73.0 bits (179), Expect = 4e-17
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 29/114 (25%)
Query: 2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITT 61
++ YR++ GE F ++ V T +ALDR
Sbjct: 160 FRLLPVQFLCPQI-SVAYRLL--EGEGLPFRSAPDSLEVSTRWALDR------------- 203
Query: 62 DIRVQALDRDDPEREKEIYITVIA-EDNGTPQLSDACTMKITVEDINDNEPMFD 114
E+ ++ + + G + +TV D +D+ P F+
Sbjct: 204 ------------EQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 63.4 bits (154), Expect = 1e-13
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 16/119 (13%)
Query: 1 MQVHATDVDPPSNG-GTIQYRIIK----APGERAKFSIDKETGIVKTLYALDRDDPEREK 55
+ VHA P + + E I ++TG++ +LD E+
Sbjct: 23 LYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEK-- 80
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFD 114
+ +R P + + + + ++ N + P
Sbjct: 81 ---------LSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACS 130
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 73.5 bits (181), Expect = 1e-16
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 24/118 (20%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ A D D I+Y + P ID G + T+ LDR+ P + IY
Sbjct: 358 TTLTAQDPDRYMQQ-NIRYTKLSDPANW--LKIDPVNGQITTIAVLDRESPNVKNNIY-- 412
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
T +A DNG P +S T++I + DINDN P +
Sbjct: 413 -------------------NATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEA 451
Score = 69.7 bits (171), Expect = 2e-15
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 31/125 (24%)
Query: 1 MQVHATDVDPPSNG-GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREKE 56
M V A D D P+ G ++YRI+ + F+I+ ETG + T+
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITV------------- 174
Query: 57 IYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQ---LSDACTMKITVEDINDNEPMF 113
LDR E+ ++ + + A D LS+ T ITV D+NDN P F
Sbjct: 175 --------AAGLDR---EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEF 223
Query: 114 DRVQY 118
+ +
Sbjct: 224 TAMTF 228
Score = 65.1 bits (159), Expect = 9e-14
Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 27/120 (22%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPG-ERAKFSIDKETG-IVKTLYALDRDDPEREKEIY 58
+ + A D D N G + + +P + ++I++ G + + +
Sbjct: 462 INITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEA------- 514
Query: 59 ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
+ +I D+G P S+ +++ V + N D +
Sbjct: 515 ------------------GIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHH 556
Score = 63.1 bits (154), Expect = 5e-13
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 29/121 (23%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
++ D N +++Y + ++ F I+ +G ++
Sbjct: 19 QELVRIRSDRDKNL-SLRYSVTGPGADQPPTGIFIINPISG-----------------QL 60
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
+T + LDR E ++ A D Q+ + + I V D+NDN P F
Sbjct: 61 SVT-----KPLDR---ELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV 112
Query: 118 Y 118
+
Sbjct: 113 W 113
Score = 53.1 bits (128), Expect = 1e-09
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 26/123 (21%)
Query: 1 MQVHATDVDPPSNGG-TIQYRIIKAPGERAKFSIDKE----TGIVKTLYALDRDDPEREK 55
+ TD D P YRI +F+I + G+V + +D E +
Sbjct: 242 ANLTVTDKDQPHTPAWNAAYRISGGD-PTGRFAILTDPNSNDGLVTVVKPIDF---ETNR 297
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
+T V A ++ + T+ +TV D+N+N P F
Sbjct: 298 MFVLT----VAAENQVPLAK------------GIQHPPQSTATVSVTVIDVNEN-PYFAP 340
Query: 116 VQY 118
Sbjct: 341 NPK 343
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 70.5 bits (173), Expect = 2e-16
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 29/121 (23%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
++ D N +++Y + ++ F I+ +G + LDR
Sbjct: 19 QELVRIRSDRDKNL-SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDR--------- 68
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
E ++ A D Q+ + + I V D+NDN P F
Sbjct: 69 ----------------ELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV 112
Query: 118 Y 118
+
Sbjct: 113 W 113
Score = 52.4 bits (126), Expect = 1e-09
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 31/112 (27%)
Query: 1 MQVHATDVDPPSNG-GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREKE 56
M V A D D P+ G ++YRI+ + F+I+ ETG + T+
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITV------------- 174
Query: 57 IYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQ---LSDACTMKITVED 105
LDR E+ ++ + + A D LS+ T ITV D
Sbjct: 175 --------AAGLDR---EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 68.3 bits (168), Expect = 2e-16
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 27/112 (24%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGE-RAKFSIDKETGIVKTLYALDRDDPEREKEIYI 59
+Q+ A D+D NG I+Y A R +D+ +G + L+ +DR
Sbjct: 34 LQLRAADLDVGVNG-QIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR----------- 81
Query: 60 TTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
E ++ TV+A D G P +D T+ + ++D NDN P
Sbjct: 82 --------------EEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 30.5 bits (70), Expect = 0.047
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 101 ITVEDINDNEPMFDRVQY 118
+ NDN P F++ Y
Sbjct: 2 SSGSSGNDNSPRFEKSVY 19
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 71.6 bits (176), Expect = 3e-16
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 31/122 (25%)
Query: 1 MQVHATDVDPPSNG--GTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
V ATD D P G + Y I++ FSI+ ET I+KT
Sbjct: 126 TNVTATDADDPVYGNSAKLVYSILEGQP---YFSIEPETAIIKTA--------------- 167
Query: 59 ITTDIRVQALDRDDPEREKEIYITVIAEDNG--TPQLSDACTMKITVEDINDNEPMFDRV 116
+ +DR E ++E + + A+D G + LS T+ +T+ D+NDN P F +
Sbjct: 168 ------LPNMDR---EAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQS 218
Query: 117 QY 118
Y
Sbjct: 219 LY 220
Score = 68.1 bits (167), Expect = 5e-15
Identities = 30/118 (25%), Positives = 41/118 (34%), Gaps = 27/118 (22%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ TD+D I+Y + G F I+ TG + + LDR+ EK Y
Sbjct: 21 VGRLHTDLD--PGSKKIKYILSG-DGAGTIFQINDITGDIHAIKRLDRE----EKAEYT- 72
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
+ QA+D L I V+DINDN P F Y
Sbjct: 73 --LTAQAVDF-----------------ETNKPLEPPSEFIIKVQDINDNAPEFLNGPY 111
Score = 43.8 bits (104), Expect = 2e-06
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 24/108 (22%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSI----DKETGIVKTLYALDRDDPEREKE 56
+V A D D N Y II A F I + G+++ LD E +K
Sbjct: 235 GRVKANDQDIGENA-QSSYDIID-GDGTALFEITSDAQAQDGVIRLRKPLDF---ETKKS 289
Query: 57 IYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVE 104
++V+A + R + D T+KI VE
Sbjct: 290 Y----TLKVEAANIHIDPR-----------FSSRGPFKDTATVKIVVE 322
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 70.1 bits (172), Expect = 4e-16
Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 27/118 (22%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+V +D S + + + + F I++ TG V LDR
Sbjct: 23 GKVVDSDRPEGSKF-RLTGKGVDQDPKG-TFRINENTGSVSVTRTLDR------------ 68
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
E + V D L +++ V D NDN P+F Y
Sbjct: 69 -------------ETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPY 113
Score = 53.2 bits (128), Expect = 7e-10
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 28/112 (25%)
Query: 1 MQVHATDVDPPSNG-GTIQYRIIKAPGERAK---FSIDKETGIVKTLYALDRDDPEREKE 56
M++ A D D P+ ++Y I + ++ F ID E G
Sbjct: 128 MRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGD----------------- 170
Query: 57 IYITTDIRVQALDRDDPEREKEIY-ITVIAEDNG--TPQLSDACTMKITVED 105
I T + LDR+ E Y + + A+D L+ T I ++D
Sbjct: 171 --IVTVVSPALLDRE--TLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 66.2 bits (162), Expect = 2e-15
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 30/118 (25%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGER---AKFSIDKETGIVKTLYALDRDDPEREKEI 57
++H +D+ I Y+ F +K+TG + LDR+ E
Sbjct: 32 AKIH-SDLAEERGL-KITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE----ETPF 85
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
++ +T A D + ++I V DINDNEP+F +
Sbjct: 86 FL---------------------LTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 68.1 bits (167), Expect = 2e-15
Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 29/119 (24%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ +D+D S G I+Y + G F ID ++G + LDR
Sbjct: 22 VGRLHSDID--SGDGNIKYIL-SGEGAGTIFVIDDKSGNIHATKTLDR------------ 66
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQ-LSDACTMKITVEDINDNEPMFDRVQY 118
E + + A D T + L + V+DINDN P F Y
Sbjct: 67 -------------EERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIY 112
Score = 68.1 bits (167), Expect = 2e-15
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 31/115 (26%)
Query: 1 MQVHATDVDPPSNG--GTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
+QV A+D D P+ G + Y I++ FS++ +TGI++T
Sbjct: 127 IQVTASDADDPTYGNSAKLVYSILEGQP---YFSVEAQTGIIRT---------------- 167
Query: 59 ITTDIRVQALDRDDPEREKEIYITVIAEDNG--TPQLSDACTMKITVEDINDNEP 111
+ +DR E ++E ++ + A+D G LS + IT+ D ++
Sbjct: 168 -----ALPNMDR---EAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 67.4 bits (165), Expect = 4e-15
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 29/121 (23%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
+ + + Y I ++ F I++ETG +K LDR
Sbjct: 19 KNLVQIKSNRDKET-KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDR--------- 68
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
E + + A + + D + ITV D NDN P F +
Sbjct: 69 ----------------EAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEV 112
Query: 118 Y 118
+
Sbjct: 113 F 113
Score = 60.4 bits (147), Expect = 2e-12
Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 29/110 (26%)
Query: 1 MQVHATDVDPPSNG--GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREK 55
M+V ATD D N I Y I+ + F+++++TG++ L
Sbjct: 128 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL------------ 175
Query: 56 EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
LDR E + V A D LS ITV+D
Sbjct: 176 ---------TSGLDR---ESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 66.9 bits (164), Expect = 4e-15
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 29/119 (24%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ +D D G+++Y + G F I++ TG ++ LDR
Sbjct: 21 VGKLHSDQDRGD--GSLKYILS-GDGAGDLFIINENTGDIQATKRLDR------------ 65
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGT-PQLSDACTMKITVEDINDNEPMFDRVQY 118
E + + A + T + I + DINDNEP+F + Y
Sbjct: 66 -------------EEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVY 111
Score = 55.0 bits (133), Expect = 1e-10
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 31/109 (28%)
Query: 1 MQVHATDVDPPSNG--GTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
+QV ATD D P+ G + Y I++ FS++ ETGI+KT
Sbjct: 126 VQVTATDADDPTYGNSAKVVYSILQGQP---YFSVESETGIIKT---------------- 166
Query: 59 ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQ--LSDACTMKITVED 105
+ +DR E ++ + + A+D G LS T+ IT+ D
Sbjct: 167 -----ALLNMDR---ENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 65.8 bits (161), Expect = 1e-14
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 30/118 (25%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
++ ++ + Y I F + G + LDR+ +K Y
Sbjct: 22 GKLTSSVGN-----KNAMYIIE-GESANTIFKVQGYDGDIYAFERLDRE----KKAEYE- 70
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
+ +DR L I V DINDN P+F + +
Sbjct: 71 --LTAHIIDR-----------------RNNRSLEPPSKFIIKVSDINDNAPIFVQKIF 109
Score = 56.6 bits (137), Expect = 3e-11
Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 31/108 (28%)
Query: 1 MQVHATDVDPPSNG--GTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
+V A D D P+ T+ Y+IIK F++D I LDR
Sbjct: 124 TKVTAEDADDPTVAGHATVTYQIIKGNE---YFTVDDSGVIFTARADLDR---------- 170
Query: 59 ITTDIRVQALDRDDPEREKEIYITVIAEDN-GTPQLSDACTMKITVED 105
E + I V A+D G S T+ I + D
Sbjct: 171 ---------------ESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 66.6 bits (163), Expect = 2e-14
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 27/120 (22%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERA-------KFSIDKETGIVKTLYALDRDDPER 53
++ T+ D + G +++ K + + + G V+ D ++
Sbjct: 7 KRIEFTEADGDTEG-KSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 54 EKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMF 113
EK I I N + +D + I V+D+ND P F
Sbjct: 66 EKTIDFWV-------------------IITNMGHNAGIKYTDNQRVIILVKDVNDEPPYF 106
Score = 65.5 bits (160), Expect = 5e-14
Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 34/122 (27%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ A D D N I Y I+ +F +D+ +G+V+T
Sbjct: 128 FTLQARDPDTDHN---IHYFIV-RDRTGGRFEVDERSGVVRTRGTDLF------------ 171
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTP----QLSDACTMKITVEDINDNEPMFDRV 116
+ + E + V AED + ++++ P F
Sbjct: 172 -------------QLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMP 217
Query: 117 QY 118
Y
Sbjct: 218 SY 219
Score = 64.3 bits (157), Expect = 1e-13
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 27/109 (24%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ + A I+Y + F+I +GIVK
Sbjct: 234 ISIKAKSFA----DREIRYTLKAQGQGAGTFNIGPTSGIVKLA----------------- 272
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDN 109
+ LD +D + + V A ++ S + + I V D+NDN
Sbjct: 273 -----KELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDN 315
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 66.9 bits (164), Expect = 2e-14
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 27/118 (22%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ + A + I+Y + F+I +GIVK LD +D R+ +Y
Sbjct: 239 ISIKAKSFA---DRE-IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFED-LRQPHVY-- 291
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
+ V A + + S + + I V D+NDN P F+ Y
Sbjct: 292 -------------------SLIVTATE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDY 329
Score = 63.9 bits (156), Expect = 2e-13
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 19/117 (16%)
Query: 2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITT 61
++ T+ D + G +++ + ++ F I + + + +
Sbjct: 13 RIEFTEADGDTEG-KSVFQL-EKETDKETFKIRDDNP-----WVTVETNGA------VRV 59
Query: 62 DIRVQALDRDDPEREKE---IYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
+ D ++ EK I N + +D + I V+D+ND P F
Sbjct: 60 K---KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFIN 113
Score = 59.6 bits (145), Expect = 7e-12
Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 34/122 (27%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ A D D N I Y I++ +F +D+ +G+V+T
Sbjct: 133 FTLQARDPDTDHN---IHYFIVR-DRTGGRFEVDERSGVVRTRGTDLF------------ 176
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTP----QLSDACTMKITVEDINDNEPMFDRV 116
+ + E + V AED + ++++ P F
Sbjct: 177 -------------QLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMP 222
Query: 117 QY 118
Y
Sbjct: 223 SY 224
Score = 51.9 bits (125), Expect = 3e-09
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 31/104 (29%)
Query: 2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITT 61
+V A D D SN I+Y + F++D GI+ LD + Y
Sbjct: 346 RVKAMDSDSGSNA-EIEYLVSDDH-----FAVD-SNGIIVNNKQLDA---DNNNAYY--- 392
Query: 62 DIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
V A+D G P S T+++ ++
Sbjct: 393 ------------------EFIVTAKDKGEPPKSGVATVRVYTKN 418
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 64.2 bits (157), Expect = 6e-14
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 33/117 (28%)
Query: 2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITT 61
Q+ A D+D + + + R F+++ +TG+V LDR
Sbjct: 31 QLLARDMD----NDPLVFGVSGEEASR-FFAVEPDTGVVWLRQPLDR------------- 72
Query: 62 DIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
E + E + D+ + I V D+NDN P F Y
Sbjct: 73 ------------ETKSEFTVEFSVSDHQGV---ITRKVNIQVGDVNDNAPTFHNQPY 114
Score = 62.2 bits (152), Expect = 3e-13
Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 30/110 (27%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
V+ATD D + G ++ Y F+ID GIV + LD
Sbjct: 129 FIVNATDPDLGAGG-SVLYSF---QPPSPFFAIDSARGIVTVIQELDY------------ 172
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNG-TPQLSDACTMKITVEDINDN 109
E + +TV A D T LS + I + D+ D
Sbjct: 173 -------------EVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 54.3 bits (131), Expect = 4e-11
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 27/105 (25%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+V +D P S + + + + F I++ +G V ALDR+ Y
Sbjct: 22 GRVVVSDRIPGSKI-KLYGKGVDQEPK-GIFKINENSGEVSVTKALDRE----AIPSYQ- 74
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
+ V D + ++I V D
Sbjct: 75 --------------------LQVETTDENGKTIEGPVDLEILVID 99
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 54.3 bits (131), Expect = 4e-11
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 27/105 (25%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+V +D S + + + + F I++ TG V LDR
Sbjct: 23 GKVVDSDRPEGSKF-RLTGKGVDQDPK-GTFRINENTGSVSVTRTLDR------------ 68
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
E + V D L +++ V D
Sbjct: 69 -------------ETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 50.1 bits (120), Expect = 1e-09
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 27/105 (25%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ +D+D G+I+Y + G F+ID TG + + LDR+ E+ Y
Sbjct: 22 VGKLHSDMD--RGDGSIKYIL-SGEGAGIVFTIDDTTGDIHAIQRLDRE----ERSQYT- 73
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
+R QALDR + I ++D
Sbjct: 74 --LRAQALDRRTG-----------------RPMEPESEFIIKIQD 99
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 49.3 bits (118), Expect = 4e-09
Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 27/105 (25%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+V ++ + + + + + F I++ +G V LDR
Sbjct: 22 GKVIRSEGTEGAKF-RLSGKGVDQDPKG-IFRINEISGDVSVTRPLDR------------ 67
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
E + V D + + I+V D
Sbjct: 68 -------------EAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 49.0 bits (117), Expect = 4e-09
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 25/105 (23%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
+ V D I+Y + G F I+ TG + + LDR+ EK Y
Sbjct: 19 ILVGRLHTDLDPGSKKIKYIL-SGDGAGTIFQINDITGDIHAIKRLDRE----EKAEYT- 72
Query: 61 TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
+ QA+D L I V+D
Sbjct: 73 --LTAQAVDF-----------------ETNKPLEPPSEFIIKVQD 98
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 47.0 bits (112), Expect = 3e-08
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 29/108 (26%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
+ + G + Y I + F I++ETG +K LDR+
Sbjct: 23 KNLVQIKSNKDKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRE----RIAT 77
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
Y + A + + D + ITV D
Sbjct: 78 YT---------------------LFSHAVSSNGNAVEDPMEILITVTD 104
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 46.7 bits (112), Expect = 4e-08
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 30/109 (27%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAK--FSIDKETGIVKTLYALDRDDPEREKEIY 58
+Q+HATD D SN I+Y K F+++ TG++ +LDR+ E I+
Sbjct: 34 IQLHATDADIGSNA-EIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDRE----ETAIH 88
Query: 59 ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDIN 107
+ V A D T+ I V D+N
Sbjct: 89 ---KVTVLASDG--------------------SSTPARATVTINVTDVN 114
Score = 31.3 bits (72), Expect = 0.028
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 101 ITVEDINDNEPMFDRVQY 118
+ NDN P+F Q
Sbjct: 2 SSGSSGNDNRPVFKEGQV 19
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.092
Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 48/117 (41%)
Query: 10 PPSN--GGTIQYRIIKAPGE----RAKFSIDKETGIVKTLYALDRDDPEREKEIY----- 58
PP + G + R KAP R FS ER+ +
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFS-------------------ERKLKFSNRFLP 422
Query: 59 IT----TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLS-DACTMKITVEDINDNE 110
+ + + V A D I +D +S +A ++I V D D
Sbjct: 423 VASPFHSHLLVPASDL-------------INKDLVKNNVSFNAKDIQIPVYDTFDGS 466
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.31
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 20 RIIKA------PGE-RA---KFSI-DKETGI-VKTLYALDRDDPEREKEIYITTDIRVQA 67
II++ P E R + S+ I L + D + + + + +
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 68 LDRDDPEREKEIY 80
+++ E I
Sbjct: 417 VEKQPKESTISIP 429
Score = 27.1 bits (59), Expect = 1.5
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 28/121 (23%)
Query: 2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETG-----IVKTLYALDRDDPERE-K 55
+H + VD Y I K + I L ++ + +
Sbjct: 444 ALHRSIVD--------HYNIPKTF-DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 56 EIYITTDIR-VQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFD 114
+++ D R ++ K I A + L+ +K I DN+P ++
Sbjct: 495 MVFL--DFRFLEQ---------K-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 115 R 115
R
Sbjct: 543 R 543
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 28.4 bits (64), Expect = 0.34
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 97 CTMKITVEDINDNEPMF 113
+I ++D+ND+ P F
Sbjct: 99 IQGEIQLQDVNDHAPEF 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.62
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 21/51 (41%)
Query: 54 EKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVE 104
EK+ ++ L + ++Y A+D+ P L+ +K T+E
Sbjct: 18 EKQ-------ALKKL-----QASLKLY----ADDSA-PALA----IKATME 47
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC,
transferase, protein KI; HET: GVD; 1.95A {Homo sapiens}
PDB: 3q4t_A* 2qlu_A*
Length = 322
Score = 27.0 bits (60), Expect = 1.6
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 40 VKTLYALDRDDPEREKEIYITTDIR 64
VK D+ + E E+Y ++
Sbjct: 52 VKIFPIQDKQSWQNEYEVYSLPGMK 76
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 26.6 bits (59), Expect = 2.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 40 VKTLYALDRDDPEREKEIYITTDIR 64
VK + + RE EIY T +R
Sbjct: 65 VKVFFTTEEASWFRETEIYQTVLMR 89
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 26.5 bits (59), Expect = 2.7
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 17 IQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKE 56
+Q + G + F G + + L + + +E
Sbjct: 88 LQKAWVLHGGAQCGFCS---PGFIVSAKGLLDTNADPSRE 124
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase,
isomerase; 1.65A {Mycobacterium tuberculosis} PDB:
2qbv_A 2w19_C 2w1a_C*
Length = 90
Score = 25.5 bits (56), Expect = 2.9
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 20 RIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
I+ RA+ S K G + R RE ++
Sbjct: 27 EILALVKRRAEVS--KAIGKARMASGGTRLVHSREMKVI 63
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate
mutase domain, chorismate mutase; HET: TSA; 2.20A
{Escherichia coli} SCOP: a.130.1.1
Length = 109
Score = 25.4 bits (56), Expect = 3.1
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 21 IIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRD-DPEREKEI 79
++ ER + + E G K L D +RE+++ + D +
Sbjct: 21 LLALLAERRELA--VEVGKAKLLSHRPVRDIDRERDLL--ERLITLGKAHHLDAHYITRL 76
Query: 80 YITVIAE 86
+ +I +
Sbjct: 77 FQLIIED 83
>3rmi_A Chorismate mutase protein; emerald biostructures, structural
genomics, seattle structur genomics center for
infectious disease, ssgcid; 2.40A {Bartonella henselae}
Length = 114
Score = 25.5 bits (56), Expect = 3.1
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 21 IIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRD-DPEREKEI 79
+I ER F + G +K Y L DP RE+ +R A+D DP+ ++
Sbjct: 28 LIHILAER--FRCTQAIGRLKARYNLPAVDPLREQYQI--KRLRKLAIDTHFDPDFAEKF 83
Query: 80 YITVIAE 86
+I E
Sbjct: 84 LKFIIKE 90
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism,
hydrolase; HET: MSE; 2.00A {Coxiella burnetii}
Length = 178
Score = 25.3 bits (56), Expect = 4.5
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 22 IKAPGERAKFSIDKETGIVKTLYALDR 48
I A G K+ DKE G + +DR
Sbjct: 23 IPANGGEVKYEYDKELGFLT----VDR 45
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.5 bits (55), Expect = 4.5
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 10/37 (27%)
Query: 48 RDDPE-----REKEIYITTDIRVQALDRDDPEREKEI 79
+PE RE++ R+Q LD E+E
Sbjct: 81 TQEPESIRKWREEQ-----RKRLQELDAASKVMEQEW 112
>1ybz_A Chorismate mutase; conserved hypothetical protein,
hyperthermophIle, structural genomics, PSI, protein
structu initiative; 1.82A {Pyrococcus furiosus} SCOP:
a.130.1.1
Length = 91
Score = 24.9 bits (55), Expect = 4.6
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 27 ERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
+R + + + G +K L +D +RE+E+
Sbjct: 39 KRLEIA--QAIGKIKKELNLPIEDRKREEEVL 68
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC,
protein kinase, transfe; HET: LDN FLC; 1.82A {Homo
sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Length = 301
Score = 25.4 bits (56), Expect = 5.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 40 VKTLYALDRDDPEREKEIYITTDIR 64
VK + D RE E+Y T +R
Sbjct: 36 VKIFSSRDEKSWFRETELYNTVMLR 60
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural
genomics, structural genomics consortium, ATP-binding,
disease mutation; HET: ADP; 2.35A {Homo sapiens}
Length = 336
Score = 25.6 bits (56), Expect = 5.3
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 40 VKTLYALDRDDPEREKEIYITTDIR 64
VK +R + EK IY +
Sbjct: 41 VKVFSFANRQNFINEKNIYRVPLME 65
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo
sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A*
1py5_A* 1rw8_A*
Length = 303
Score = 25.4 bits (56), Expect = 5.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 40 VKTLYALDRDDPEREKEIYITTDIR 64
VK + + RE EIY T +R
Sbjct: 31 VKIFSSREERSWFREAEIYQTVMLR 55
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA;
NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Length = 104
Score = 24.7 bits (54), Expect = 5.9
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 27 ERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRD-DPEREKEIYITVIA 85
ER + K+ +K + +DPEREK IY IR + + D +I+ +I
Sbjct: 33 ERNSLA--KDVAEIKNQLGIPINDPEREKYIY--DRIRKLCKEHNVDENIGIKIFQRLIE 88
Query: 86 E 86
Sbjct: 89 H 89
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase);
thermostability, magnesium, hydrolase; 2.70A
{Sulfolobus acidocaldarius} SCOP: b.40.5.1
Length = 173
Score = 24.9 bits (55), Expect = 6.1
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 7 DVDPPSNGGTIQYRIIKAP-GERAKFSIDKETGIVKTLYALDR 48
+ P N + +++ P G K+ D E G++K +DR
Sbjct: 2 KLSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIK----VDR 40
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 24.9 bits (54), Expect = 9.1
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 27 ERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYIT-VIA 85
E + + + + E+ KE T+ V+A+ E Y+
Sbjct: 58 EVPALDNKARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAV---------EYYLQDKFQ 108
Query: 86 EDNGTPQLSDACTMKITVEDIND 108
E+ T EDIN+
Sbjct: 109 ENEQLKSCVAFIHFACTSEDINN 131
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A
{Thermococcus thioreducens} PDB: 3r6e_A* 3q3l_A 3i98_A
3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Length = 178
Score = 24.5 bits (54), Expect = 9.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 7 DVDPPSNGGTIQYRIIKAP-GERAKFSIDKETGIVKTLYALDR 48
+++P + Y +I+ P G R K+ +DK TG++K LDR
Sbjct: 6 ELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLK----LDR 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.381
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,921,209
Number of extensions: 112145
Number of successful extensions: 422
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 108
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)