RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9968
(118 letters)
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 40.9 bits (95), Expect = 2e-06
Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 29/108 (26%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYALDRDDPEREKEI 57
++ + + Y I + + F I+ ETG +
Sbjct: 19 KRLVQIKSNKDRFN-KVYYSITGQGADNPPQGVFRIEWETGWMLVTR------------- 64
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
D E + ++ A + + + I V D
Sbjct: 65 ------------PLDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 40.0 bits (92), Expect = 6e-06
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 21/96 (21%)
Query: 11 PSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDR 70
P + +++K+ GIV LDR+
Sbjct: 33 PDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESE------------------- 73
Query: 71 DDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDI 106
+ + ++ D+G + T+ + V D+
Sbjct: 74 --YVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 38.6 bits (89), Expect = 2e-05
Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 29/108 (26%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPG---ERAKFSIDKETGIVKTLYALDRDDPEREKEI 57
+ + G + Y I F I++ETG +K LDR+
Sbjct: 22 KNLVQIKSNKDKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRER------- 73
Query: 58 YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
+ A + + D + ITV D
Sbjct: 74 ------------------IATYTLFSHAVSSNGNAVEDPMEILITVTD 103
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 37.0 bits (84), Expect = 8e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 72 DPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
D E+ E +TV A D LS I + D
Sbjct: 80 DREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 36.2 bits (82), Expect = 1e-04
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 44 YALDRDDPEREKEIYITTDIRVQAL----DRDDPEREKEIYITVIAEDNGTPQLSDACTM 99
Y + DPE + T + + D E + V A D LS
Sbjct: 47 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKA 106
Query: 100 KITVED 105
ITV+D
Sbjct: 107 VITVKD 112
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 35.6 bits (81), Expect = 3e-04
Identities = 12/107 (11%), Positives = 23/107 (21%), Gaps = 27/107 (25%)
Query: 1 MQVHATDVDPPSNGGTIQYRIIKAPGERAK--FSIDKETGIVKTLYALDRDDPEREKEIY 58
++ N + F I+ +G +
Sbjct: 21 QELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK-------------- 66
Query: 59 ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
D E ++ A D Q+ + + I V D
Sbjct: 67 -----------PLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 31.9 bits (71), Expect = 0.005
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 60 TTDIRVQALDRDDPEREKEIYITVIAEDN---GTPQLSDACTMKITVEDI 106
+ + D E K+ + + E+ P + T+ +TVED+
Sbjct: 64 SNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 28.9 bits (63), Expect = 0.065
Identities = 5/42 (11%), Positives = 10/42 (23%), Gaps = 2/42 (4%)
Query: 70 RDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
++ + I V+ D + TV
Sbjct: 65 PTQQLKKGDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAI 104
>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 165
Score = 29.1 bits (65), Expect = 0.080
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 14 GGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRD-D 72
G + ++ A ER + + K L +D R ++ + A + D
Sbjct: 1 GTSQLAELVDAAAERLEVA--DPVAAFKWRAQLPIEDSGRVEQQL--AKLGEDARSQHID 56
Query: 73 PEREKEIYITVIAE 86
P+ ++ I
Sbjct: 57 PDYVTRVFDDQIRA 70
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 27.4 bits (59), Expect = 0.29
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 73 PEREKEIYITVIAEDNGTP---QLSDACTMKITVED 105
E+ ++ + + A D LS+ T ITV D
Sbjct: 79 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 24.4 bits (53), Expect = 2.4
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 17 IQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRD-DPER 75
+ +++ ER + + E G K L D +RE+++ + D
Sbjct: 13 LDEKLLALLAERRELA--VEVGKAKLLSHRPVRDIDRERDLL--ERLITLGKAHHLDAHY 68
Query: 76 EKEIYITVIAE 86
++ +I +
Sbjct: 69 ITRLFQLIIED 79
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 24.6 bits (52), Expect = 3.0
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 80 YITVIAEDNGTPQLSDACTMKITVEDINDNEPMFD 114
+ A+D T + + ++ E EPM +
Sbjct: 78 KFLIYAQDKETQEKWQ-VAVNLSREPTLTEEPMKE 111
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246
{Methanococcus jannaschii [TaxId: 2190]}
Length = 93
Score = 23.7 bits (51), Expect = 4.3
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 27 ERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRD-DPEREKEIYITVIA 85
ER + K+ +K + +DPEREK IY IR + + D +I+ +I
Sbjct: 33 ERNSLA--KDVAEIKNQLGIPINDPEREKYIY--DRIRKLCKEHNVDENIGIKIFQRLIE 88
Query: 86 E 86
Sbjct: 89 H 89
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 74
Score = 22.8 bits (49), Expect = 6.8
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 17 IQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
I +II +R + + + G +K L +D +RE+E+
Sbjct: 13 IDNQIISLLKKRLEIA--QAIGKIKKELNLPIEDRKREEEVL 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.135 0.381
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 465,755
Number of extensions: 21464
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 26
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.6 bits)