BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9969
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 36 NFDYLSNFGPRFRKLADMYGEDPSDE 61
+++YLS++G RFRKLADMYG D +E
Sbjct: 855 DYNYLSDWGSRFRKLADMYGGDDDEE 880
>pdb|1I7X|B Chain B, Beta-CateninE-Cadherin Complex
pdb|1I7X|D Chain D, Beta-CateninE-Cadherin Complex
Length = 151
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 34 DLNFDYLSNFGPRFRKLADMYG 55
D ++DYL+ +G RF+KLADMYG
Sbjct: 125 DQDYDYLNEWGNRFKKLADMYG 146
>pdb|1I7W|B Chain B, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|D Chain D, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
Length = 151
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 34 DLNFDYLSNFGPRFRKLADMYG 55
D ++DYL+ +G RF+KLADMYG
Sbjct: 125 DQDYDYLNEWGNRFKKLADMYG 146
>pdb|3IFQ|C Chain C, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|D Chain D, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 107
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 34 DLNFDYLSNFGPRFRKLADMYG 55
D ++DYL+ +G RF+KLADMYG
Sbjct: 81 DQDYDYLNEWGNRFKKLADMYG 102
>pdb|3QDE|A Chain A, The Structure Of Cellobiose Phosphorylase From Clostridium
Thermocellum In Complex With Phosphate
pdb|3QDE|B Chain B, The Structure Of Cellobiose Phosphorylase From Clostridium
Thermocellum In Complex With Phosphate
Length = 811
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 28 TVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSD 60
TV GD+ FDY +RK+A Y ED SD
Sbjct: 663 TVVGRGDMAFDY-------YRKIAPAYIEDVSD 688
>pdb|1O7J|A Chain A, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
pdb|1O7J|B Chain B, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
pdb|1O7J|C Chain C, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
pdb|1O7J|D Chain D, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
Length = 327
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 33 GDLNFDYLSNFGPRFRKLADMYGEDPSDEEDEN 65
G L D L N P +KLA++ GE S+ EN
Sbjct: 32 GALGVDTLINAVPEVKKLANVKGEQFSNMASEN 64
>pdb|1HFJ|A Chain A, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Sulfate
pdb|1HFJ|C Chain C, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Sulfate
pdb|1HFK|A Chain A, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Weak Sulfate
pdb|1HFK|C Chain C, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Weak Sulfate
pdb|1HG0|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG1|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HG1|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HG1|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HG1|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1JSL|A Chain A, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSL|B Chain B, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSL|C Chain C, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSL|D Chain D, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSR|A Chain A, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|B Chain B, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|C Chain C, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|D Chain D, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1HFW|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HFW|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HFW|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HFW|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
Length = 327
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 33 GDLNFDYLSNFGPRFRKLADMYGEDPSDEEDEN 65
G L D L N P +KLA++ GE S+ EN
Sbjct: 32 GALGVDTLINAVPEVKKLANVKGEQFSNMASEN 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,491,585
Number of Sequences: 62578
Number of extensions: 89914
Number of successful extensions: 120
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 12
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)