Query psy9969
Match_columns 75
No_of_seqs 105 out of 333
Neff 4.6
Searched_HMMs 29240
Date Sat Aug 17 00:20:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i7w_B E-cadherin, epithelial- 99.8 7E-22 2.4E-26 136.3 3.7 55 5-59 96-150 (151)
2 1q55_A EP-cadherin, C-cadherin 99.8 3.6E-20 1.2E-24 150.6 0.0 57 4-60 823-879 (880)
3 3fnr_A Arginyl-tRNA synthetase 23.0 16 0.00054 28.0 -0.3 17 37-53 73-89 (464)
4 1a3q_A Protein (nuclear factor 12.2 92 0.0031 22.8 1.6 17 8-24 14-30 (285)
5 1f7u_A Arginyl-tRNA synthetase 11.2 67 0.0023 25.3 0.6 18 38-55 187-204 (607)
6 2hnh_A DNA polymerase III alph 10.8 53 0.0018 27.4 -0.1 12 14-25 360-371 (910)
7 3bua_E HSNM1B, DNA cross-LINK 10.5 1E+02 0.0034 16.2 1.0 11 45-55 1-11 (36)
8 3ktp_B Trinucleotide repeat-co 9.5 70 0.0024 15.2 0.1 9 41-49 4-12 (22)
9 2hi6_A UPF0107 protein AF0055; 9.3 1.2E+02 0.0043 19.9 1.4 16 4-22 51-66 (141)
10 3r3q_A Suppressor protein STP2 9.3 2.8E+02 0.0096 18.3 3.2 27 35-61 128-161 (162)
No 1
>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*
Probab=99.84 E-value=7e-22 Score=136.28 Aligned_cols=55 Identities=29% Similarity=0.451 Sum_probs=36.7
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCcCcchHHHHHhhcCCCC
Q psy9969 5 KIYTFPFLKISRHTTNRKPRSPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPS 59 (75)
Q Consensus 5 ~~~~~~y~~EG~gS~AGSLSSL~Ss~~d~~~~~dyL~~WGPrFq~LA~ly~~~~~ 59 (75)
-+.+.+|.+||.||+|||||||.|++.+.+++|+||.+|||||++||+||+..+.
T Consensus 96 ~D~l~~Y~yEG~gS~agSLSsl~S~~~~~d~d~d~L~~wGPrF~~LA~~yg~~~~ 150 (151)
T 1i7w_B 96 YDSLLVFDYEGSGSEAASLSSLNSSESDQDQDYDYLNEWGNRFKKLADMYGGGED 150 (151)
T ss_dssp CCCCCCCCCCCCCCCCTTCCCC-----------CCTTTSCGGGHHHHHHC-----
T ss_pred ccceeeeeecCCCCccCccccccccCcccCcCchhhcccchhHHHHHHHhccCCC
Confidence 3467889999999999999999998888899999999999999999999997654
No 2
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=99.76 E-value=3.6e-20 Score=150.64 Aligned_cols=57 Identities=30% Similarity=0.478 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCcCcchHHHHHhhcCCCCC
Q psy9969 4 NKIYTFPFLKISRHTTNRKPRSPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSD 60 (75)
Q Consensus 4 ~~~~~~~y~~EG~gS~AGSLSSL~Ss~~d~~~~~dyL~~WGPrFq~LA~ly~~~~~~ 60 (75)
+.++...|.|||.||+|||||||.|+..+++++|+||++|||||+|||+||+..+.+
T Consensus 823 p~D~l~~y~yEG~gS~agSlssl~s~~~~~d~d~d~L~~~gprF~~LA~~~~~~~~~ 879 (880)
T 1q55_A 823 PYDSLLVFDYEGSGSEAASLSSLNSSNSNDEHDYNYLSDWGSRFRKLADMYGGDDDE 879 (880)
T ss_dssp ---------------------------------------------------------
T ss_pred cccceeeecccCCCCcCCCchhcccCCCccccChhhhcccchhhHHHHHHhCCCcCC
Confidence 345778999999999999999999999999999999999999999999999987653
No 3
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=22.99 E-value=16 Score=28.01 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=14.2
Q ss_pred CCccCCcCcchHHHHHh
Q psy9969 37 FDYLSNFGPRFRKLADM 53 (75)
Q Consensus 37 ~dyL~~WGPrFq~LA~l 53 (75)
-.|++|||-+|..|+.-
T Consensus 73 ~nyi~D~G~Q~g~l~~~ 89 (464)
T 3fnr_A 73 EYYVNDAGNQIYLLGLS 89 (464)
T ss_dssp EEEECCCHHHHHHHHHH
T ss_pred EeeeCCccHHHHHHHHH
Confidence 36899999999999643
No 4
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A
Probab=12.21 E-value=92 Score=22.81 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=12.6
Q ss_pred ccccccCCCCCCCCCCC
Q psy9969 8 TFPFLKISRHTTNRKPR 24 (75)
Q Consensus 8 ~~~y~~EG~gS~AGSLS 24 (75)
.|-|.|+-+|+.||||-
T Consensus 14 ~~RfRY~~EG~s~Gsi~ 30 (285)
T 1a3q_A 14 GFRFRYGCEGPSHGGLP 30 (285)
T ss_dssp SBCCEETTTCSCSCCCC
T ss_pred cceeEEeeccCCCCCCc
Confidence 45556778889999974
No 5
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=11.22 E-value=67 Score=25.32 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=14.9
Q ss_pred CccCCcCcchHHHHHhhc
Q psy9969 38 DYLSNFGPRFRKLADMYG 55 (75)
Q Consensus 38 dyL~~WGPrFq~LA~ly~ 55 (75)
.|+.|||-+|..|+.-|.
T Consensus 187 ~~i~D~G~Q~~~l~~~~~ 204 (607)
T 1f7u_A 187 NYLGDWGKQFGLLAVGFE 204 (607)
T ss_dssp EEEBCCSHHHHHHHHHHH
T ss_pred EeecCcchHHHHHHHHHH
Confidence 789999999999975543
No 6
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=10.75 E-value=53 Score=27.40 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCC
Q psy9969 14 ISRHTTNRKPRS 25 (75)
Q Consensus 14 EG~gS~AGSLSS 25 (75)
-|+||.||||=+
T Consensus 360 pGRGSaagSlVa 371 (910)
T 2hnh_A 360 PGRGSGAGSLVA 371 (910)
T ss_dssp SCCTTGGGCHHH
T ss_pred CCcccHHHHHHH
Confidence 489999999643
No 7
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=10.46 E-value=1e+02 Score=16.18 Aligned_cols=11 Identities=45% Similarity=0.480 Sum_probs=8.1
Q ss_pred cchHHHHHhhc
Q psy9969 45 PRFRKLADMYG 55 (75)
Q Consensus 45 PrFq~LA~ly~ 55 (75)
|.|+.||--|=
T Consensus 1 ~e~r~LALKYL 11 (36)
T 3bua_E 1 SEFRGLALKYL 11 (36)
T ss_pred CchHHHHHHHH
Confidence 67888887663
No 8
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=9.55 E-value=70 Score=15.15 Aligned_cols=9 Identities=33% Similarity=0.704 Sum_probs=6.9
Q ss_pred CCcCcchHH
Q psy9969 41 SNFGPRFRK 49 (75)
Q Consensus 41 ~~WGPrFq~ 49 (75)
.+|-|.||+
T Consensus 4 ~sWpPef~p 12 (22)
T 3ktp_B 4 INWPPEFHP 12 (26)
T ss_pred ccCCccccc
Confidence 468898885
No 9
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=9.33 E-value=1.2e+02 Score=19.91 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=12.4
Q ss_pred ccccccccccCCCCCCCCC
Q psy9969 4 NKIYTFPFLKISRHTTNRK 22 (75)
Q Consensus 4 ~~~~~~~y~~EG~gS~AGS 22 (75)
.|+.+|+ -|.||..||
T Consensus 51 gkILv~P---~gkGSt~gS 66 (141)
T 2hi6_A 51 GRILVFP---GGKGSTVGS 66 (141)
T ss_dssp TSEEEES---CCSCCSSCT
T ss_pred CeEEEec---CCCCccHHH
Confidence 4566777 789998887
No 10
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=9.32 E-value=2.8e+02 Score=18.27 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=19.7
Q ss_pred CCCCccCCcCcc-------hHHHHHhhcCCCCCC
Q psy9969 35 LNFDYLSNFGPR-------FRKLADMYGEDPSDE 61 (75)
Q Consensus 35 ~~~dyL~~WGPr-------Fq~LA~ly~~~~~~~ 61 (75)
--..||.+|-|. .+.|..++++..++.
T Consensus 128 I~lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 128 IALPILHAWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp BCCGGGGSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred EeCcccccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 356899999994 667777777766553
Done!