Query psy9969
Match_columns 75
No_of_seqs 105 out of 333
Neff 4.6
Searched_HMMs 13730
Date Sat Aug 17 00:21:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9969.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9969hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f7ua2 c.26.1.1 (A:136-483) A 29.1 8 0.00059 26.0 0.9 17 38-54 52-68 (348)
2 d1iq0a2 c.26.1.1 (A:97-466) Ar 21.4 12 0.00086 25.4 0.6 21 37-57 50-70 (370)
3 d1a3qa2 b.2.5.3 (A:37-226) p52 19.0 21 0.0015 23.0 1.4 17 9-25 15-31 (184)
4 d1g7ea_ c.47.1.7 (A:) Endoplas 15.5 29 0.0021 19.4 1.3 17 42-58 36-52 (122)
5 d1gjia2 b.2.5.3 (A:7-181) p65 13.4 25 0.0018 22.4 0.6 17 9-25 14-30 (175)
6 d1bvoa_ b.2.5.3 (A:) Dorsal ho 12.6 29 0.0021 22.1 0.7 17 9-25 14-30 (175)
7 d1ikna2 b.2.5.3 (A:19-191) p65 10.8 47 0.0034 21.0 1.3 17 9-25 14-30 (173)
8 d2ccaa2 a.93.1.3 (A:436-720) C 9.6 52 0.0038 22.0 1.3 17 43-59 265-281 (285)
9 d1ynra1 a.3.1.1 (A:1-80) Cytoc 8.4 88 0.0064 15.9 1.7 16 43-58 21-36 (80)
10 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 6.3 80 0.0058 15.8 0.8 21 38-58 15-35 (65)
No 1
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.12 E-value=8 Score=26.04 Aligned_cols=17 Identities=35% Similarity=0.720 Sum_probs=15.1
Q ss_pred CccCCcCcchHHHHHhh
Q psy9969 38 DYLSNFGPRFRKLADMY 54 (75)
Q Consensus 38 dyL~~WGPrFq~LA~ly 54 (75)
.|++|||.+|..|+.-|
T Consensus 52 ~yvnD~G~Qi~~l~~~~ 68 (348)
T d1f7ua2 52 NYLGDWGKQFGLLAVGF 68 (348)
T ss_dssp EEEBCCSHHHHHHHHHH
T ss_pred EEECCchHHHHHHHHHH
Confidence 68999999999998765
No 2
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=21.44 E-value=12 Score=25.36 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=16.7
Q ss_pred CCccCCcCcchHHHHHhhcCC
Q psy9969 37 FDYLSNFGPRFRKLADMYGED 57 (75)
Q Consensus 37 ~dyL~~WGPrFq~LA~ly~~~ 57 (75)
-.|++|||-+|-+|+--+...
T Consensus 50 ~nyigD~G~Qi~~l~~~~~~~ 70 (370)
T d1iq0a2 50 LNYIDDTGRQAAETLFALRHY 70 (370)
T ss_dssp EEEECTTSHHHHHHHHHHHHT
T ss_pred EEeECCchHHHHHHHHHHHHh
Confidence 368999999999998766543
No 3
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.01 E-value=21 Score=22.98 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=12.1
Q ss_pred cccccCCCCCCCCCCCC
Q psy9969 9 FPFLKISRHTTNRKPRS 25 (75)
Q Consensus 9 ~~y~~EG~gS~AGSLSS 25 (75)
|-|.|+-+|+.||||--
T Consensus 15 ~RfRY~cEG~saGsi~G 31 (184)
T d1a3qa2 15 FRFRYGCEGPSHGGLPG 31 (184)
T ss_dssp BCCEETTTCSCSCCCCB
T ss_pred cccCcccCCCCCCCCCc
Confidence 45556777789999854
No 4
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.48 E-value=29 Score=19.36 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.1
Q ss_pred CcCcchHHHHHhhcCCC
Q psy9969 42 NFGPRFRKLADMYGEDP 58 (75)
Q Consensus 42 ~WGPrFq~LA~ly~~~~ 58 (75)
.|.|.|++||+.+....
T Consensus 36 ~~~~~~~~la~~~~~~~ 52 (122)
T d1g7ea_ 36 EKQDEFKRLAENSASSD 52 (122)
T ss_dssp TTTHHHHHHHHHGGGCS
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 47799999999997753
No 5
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]}
Probab=13.36 E-value=25 Score=22.43 Aligned_cols=17 Identities=6% Similarity=-0.048 Sum_probs=10.1
Q ss_pred cccccCCCCCCCCCCCC
Q psy9969 9 FPFLKISRHTTNRKPRS 25 (75)
Q Consensus 9 ~~y~~EG~gS~AGSLSS 25 (75)
|-|.|+-+|+.||||--
T Consensus 14 ~RfRY~~EG~s~Gsi~G 30 (175)
T d1gjia2 14 MRFRYKCEGRSAGSIPG 30 (175)
T ss_dssp BCCEEGGGCSCCCCCCB
T ss_pred ceeEecccCCCCCCCCc
Confidence 33445555667888754
No 6
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Probab=12.56 E-value=29 Score=22.09 Aligned_cols=17 Identities=6% Similarity=-0.052 Sum_probs=10.1
Q ss_pred cccccCCCCCCCCCCCC
Q psy9969 9 FPFLKISRHTTNRKPRS 25 (75)
Q Consensus 9 ~~y~~EG~gS~AGSLSS 25 (75)
|-|.|+-+|+.||||--
T Consensus 14 ~RfRY~~Eg~s~Gsi~G 30 (175)
T d1bvoa_ 14 LRFRYECEGRSAGSIPG 30 (175)
T ss_dssp CCCBCGGGCSCCCCCCB
T ss_pred ceeEecccCCCCCCCcc
Confidence 34445555567888754
No 7
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.81 E-value=47 Score=20.97 Aligned_cols=17 Identities=6% Similarity=-0.048 Sum_probs=9.5
Q ss_pred cccccCCCCCCCCCCCC
Q psy9969 9 FPFLKISRHTTNRKPRS 25 (75)
Q Consensus 9 ~~y~~EG~gS~AGSLSS 25 (75)
|-|.|+-+|+.||||--
T Consensus 14 ~RfRY~~Eg~s~Gsi~G 30 (173)
T d1ikna2 14 MRFRYKCEGRSAGSIPG 30 (173)
T ss_dssp CCCEETTTCSCSCCCCB
T ss_pred ceeEecccCCCCCCCcc
Confidence 33445555556777653
No 8
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.61 E-value=52 Score=22.03 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=14.1
Q ss_pred cCcchHHHHHhhcCCCC
Q psy9969 43 FGPRFRKLADMYGEDPS 59 (75)
Q Consensus 43 WGPrFq~LA~ly~~~~~ 59 (75)
+-|.|++++++|...+.
T Consensus 265 ~D~~fR~~ve~YA~Dd~ 281 (285)
T d2ccaa2 265 SNSELRALVEVYGADDA 281 (285)
T ss_dssp HSHHHHHHHHHHTSTTC
T ss_pred cCHHHHHHHHHHhcccc
Confidence 46999999999987654
No 9
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
Probab=8.44 E-value=88 Score=15.87 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=12.8
Q ss_pred cCcchHHHHHhhcCCC
Q psy9969 43 FGPRFRKLADMYGEDP 58 (75)
Q Consensus 43 WGPrFq~LA~ly~~~~ 58 (75)
-||.|..|+..|....
T Consensus 21 ~gP~~~~l~~~~~~~~ 36 (80)
T d1ynra1 21 VGPAYADVAKKYAGRK 36 (80)
T ss_dssp SSCCHHHHHHHHTTCT
T ss_pred CCCCccchhhhccccc
Confidence 4899999999886543
No 10
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.35 E-value=80 Score=15.77 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=16.8
Q ss_pred CccCCcCcchHHHHHhhcCCC
Q psy9969 38 DYLSNFGPRFRKLADMYGEDP 58 (75)
Q Consensus 38 dyL~~WGPrFq~LA~ly~~~~ 58 (75)
+.+...|..|..+|..++.+.
T Consensus 15 ~~~~~~G~~W~~Ia~~~~~Rt 35 (65)
T d2cu7a1 15 QGLAKFGRRWTKISKLIGSRT 35 (65)
T ss_dssp HHHHHTCSCHHHHHHHHSSSC
T ss_pred HHHHHhcchHHHHHHHcCCCC
Confidence 456778999999999997654
Done!