RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9969
         (75 letters)



>d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus
          subtilis [TaxId: 1423]}
          Length = 115

 Score = 24.4 bits (52), Expect = 1.2
 Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 7/48 (14%)

Query: 1  MKINKIYTFPF-------LKISRHTTNRKPRSPSTVTDEGDLNFDYLS 41
          +KI +I TFP           +      +      +  E  ++     
Sbjct: 1  VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGEC 48


>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 411

 Score = 24.3 bits (52), Expect = 1.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 46  RFRKLADMYGEDPSDE 61
            F  L   YGED  D+
Sbjct: 359 EFESLMHTYGEDSGDK 374


>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 332

 Score = 24.2 bits (52), Expect = 1.8
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 38  DYLSNFGPRFRKLADMYGEDPSDEEDENY 66
              SN    +++L D +  DP     E +
Sbjct: 261 MMHSNMETLYKELGDYFVFDPKKLSVEEF 289


>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon
          Thermococcus gorgonarius [TaxId: 71997]}
          Length = 426

 Score = 24.1 bits (51), Expect = 2.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 25 SPSTVTDEGDLNFDYLSNFGPRFRK 49
          SP T+  EG   +D     G +F K
Sbjct: 72 SPDTLNREGCEEYDVAPQVGHKFCK 96


>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 285

 Score = 23.2 bits (49), Expect = 3.9
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 8/46 (17%)

Query: 16  RHTTNRKPRSPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDE 61
           +  + +   + S V    DL F   SN     R L ++YG D +  
Sbjct: 246 KDGSGKVKWTGSRV----DLVF--GSN--SELRALVEVYGADDAQP 283


>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia
          coli [TaxId: 562]}
          Length = 87

 Score = 22.5 bits (48), Expect = 5.9
 Identities = 3/15 (20%), Positives = 5/15 (33%)

Query: 50 LADMYGEDPSDEEDE 64
           A+ +  D      E
Sbjct: 54 AAERFEPDADRANYE 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 287,157
Number of extensions: 10719
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 8
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.5 bits)