RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9975
(382 letters)
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 387 bits (996), Expect = e-132
Identities = 123/385 (31%), Positives = 192/385 (49%), Gaps = 15/385 (3%)
Query: 2 KDVKYFGILIGTYPALLIKDPGLIMRILVKD-FRYFYDRGFHVSDSDVLGTNLFFLRNPK 60
K K +G G P L I DP +I +LVK+ + F +R + + + + +
Sbjct: 45 KYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPV-GFMKSAISIAEDEE 103
Query: 61 WKLLRNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHK-KEWPTRQLMGDAMTDI 119
WK LR+ F+S KLK I+ Q D L+ L A K + + G D+
Sbjct: 104 WKRLRSLLSPTFTSGKLKEMVPIIAQ--YGDVLVRNLRREAETGKPVTLKDVFGAYSMDV 161
Query: 120 VCKAICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFS--PYLAKKVHI--FPR 175
+ G+ I S+ NP V F +I F + + ++I FPR
Sbjct: 162 ITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPR 221
Query: 176 ILHTYFDDLTWKTIEMRKEKN-IRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFI 234
+ + + E R E R D LQL+++ ++ ++ LS V+ I
Sbjct: 222 EVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKET--ESHKALSDLELVAQSII 279
Query: 235 MILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVL 294
I AGYET+++ S ++ELA HPD+Q K+++EI V + TYD++ +M++LD V+
Sbjct: 280 FIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVL-PNKAPPTYDTVLQMEYLDMVV 338
Query: 295 SETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
+ETLR++P+A + R C ++ I G I KGV V +P+ ALH DP W +PE + P+R
Sbjct: 339 NETLRLFPIAMRLERVCKKDVEINGM--FIPKGVVVMIPSYALHRDPKYWTEPEKFLPER 396
Query: 355 FSEENSASIIPGSYSPFGDGPRICI 379
FS++N +I P Y+PFG GPR CI
Sbjct: 397 FSKKNKDNIDPYIYTPFGSGPRNCI 421
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 242 bits (619), Expect = 3e-76
Identities = 86/389 (22%), Positives = 153/389 (39%), Gaps = 37/389 (9%)
Query: 5 KYFGILIGTYPALLIKDPGLIMRILVK----DFRYFYDRGFHVSDSDVLGTNLFFLRN-P 59
+ + ++++ P + + L+ Y V + G L N
Sbjct: 25 PVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYE 84
Query: 60 KWKLLRNKTVS-VFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKE----WPTRQLMGD 114
+W R + + FS + L S + + ++ L++ L A +
Sbjct: 85 RWHKQR-RVIDLAFSRSSLVSLMETFNE--KAEQLVEILEAKADGQTPVSMQDMLTYT-- 139
Query: 115 AMTDIVCKAICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFP 174
AM DI+ KA G+E + + Q + +RNT+ F P K++
Sbjct: 140 AM-DILAKAAFGMETSMLLGAQKPLS--QAVKLMLEGITASRNTLAKFLPGKRKQLREVR 196
Query: 175 RILHTYFDDLTWKTIEMRKE----KNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVS 230
+ + ++ R+E +D+L +L+ AE E +
Sbjct: 197 ESIRF-LRQVGRDWVQRRREALKRGEEVPADILTQILK---------AEEGAQDDEGLLD 246
Query: 231 NIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFL 290
N +AG+ETS + T+ EL+ P+I +++ E+ +V S + ++ L ++++L
Sbjct: 247 NFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIG-SKRYLDFEDLGRLQYL 305
Query: 291 DQVLSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETY 350
QVL E+LR+YP A FR EE I G + + T + ++DP T+
Sbjct: 306 SQVLKESLRLYPPAWGTFRLLEEETLIDG--VRVPGNTPLLFSTYVMGRMDTYFEDPLTF 363
Query: 351 NPDRFSEENSASIIPGSYSPFGDGPRICI 379
NPDRF +Y PF G R CI
Sbjct: 364 NPDRFGPGAPKP--RFTYFPFSLGHRSCI 390
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 223 bits (570), Expect = 1e-68
Identities = 55/393 (13%), Positives = 117/393 (29%), Gaps = 52/393 (13%)
Query: 15 PALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTNLFFLRNP-------------KW 61
A + ++P ++ + K F +D + GT +
Sbjct: 77 GAFIAENPQVVALLDGKSFPVLFDVDKVEKKDLLTGTYMPSTELTGGYRILSYLDPSEPK 136
Query: 62 KLLRNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPT-RQLMGDAMTDIV 120
+ + F +L D L + K + +
Sbjct: 137 HEKLKNLLFFLLKSSRNRIFPEFQA--TYSELFDSLEKELSLKGKADFGGSSDGTAFNFL 194
Query: 121 CKAICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRILHTY 180
+A G K A + N S L + I ++HT+
Sbjct: 195 ARAFYGTNPADTKLK--------ADAPGLITKWVLFNLHPLLSIGLPRV--IEEPLIHTF 244
Query: 181 FDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAGY 240
+ ++ ++L+E A+ +SRE N+ A
Sbjct: 245 SLPPALVKSDYQRLYEFFLESAGEILVE---------ADKLGISREEATHNLLF---ATC 292
Query: 241 ETSTTTSSLTLHELAHH-----PDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLS 295
+ + + + +++ +EI+ V + +GG++T +++KM+ V+
Sbjct: 293 FNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMGAIEKMELTKSVVY 352
Query: 296 ETLRIYPLANMIFRECMEEYNIPGTDHV--IEKGVFVQLPTLALHTDPALWKDPETYNPD 353
E LR P + ++ I D ++ G + DP ++ + + P+
Sbjct: 353 ECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYGYQPLATRDPKIFDRADEFVPE 412
Query: 354 RFSEENSASIIPGSYSPFG-------DGPRICI 379
RF E ++ G G + C
Sbjct: 413 RFVGEEGEKLLRHVLWSNGPETETPTVGNKQCA 445
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 222 bits (567), Expect = 2e-68
Identities = 84/383 (21%), Positives = 142/383 (37%), Gaps = 27/383 (7%)
Query: 5 KYFGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTNLF--FLRNPKWK 62
+ F + LI + D G LF + WK
Sbjct: 38 EIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLFTSWTHEKNWK 97
Query: 63 LLRNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQL-MGDAMT---- 117
N + FS +K ++V + L+ + + + + MT
Sbjct: 98 KAHNILLPSFSQQAMKGYHAMMVD--IAVQLVQKWERLNADEH-----IEVPEDMTRLTL 150
Query: 118 DIVCKAICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRIL 177
D + +S H + +M A N P + F +
Sbjct: 151 DTIGLCGFNYRFNSFYRDQP-HPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDI 209
Query: 178 HTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMIL 237
+DL K I RK + DLL +L + E L E I ++
Sbjct: 210 KV-MNDLVDKIIADRKASGEQSDDLLTHMLNGKDPE-----TGEPLDDENIRYQIITFLI 263
Query: 238 AGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSET 297
AG+ET++ S L+ L +P + K +E +V +Y +K++K++ VL+E
Sbjct: 264 AGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLV--DPVPSYKQVKQLKYVGMVLNEA 321
Query: 298 LRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWK-DPETYNPDRFS 356
LR++P A E+ + G ++ +EKG + + LH D +W D E + P+RF
Sbjct: 322 LRLWPTAPAFSLYAKEDTVLGG-EYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERF- 379
Query: 357 EENSASIIPGSYSPFGDGPRICI 379
EN ++I ++ PFG+G R CI
Sbjct: 380 -ENPSAIPQHAFKPFGNGQRACI 401
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 219 bits (560), Expect = 4e-67
Identities = 72/387 (18%), Positives = 137/387 (35%), Gaps = 43/387 (11%)
Query: 5 KYFGILIGTYPALLIKDPGLIMRILVKDFRY--FYDRGFHVSDSDVLGTNLFFLRNPKWK 62
++ + I L+I + I+ + F + +F WK
Sbjct: 83 EFMRVWISGEETLIISKSSSMFHIMKHNHYSSRFGSKLGLQCIGMHEKGIIFNNNPELWK 142
Query: 63 LLRNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKE----WPTRQLMGDAMTD 118
R + S L + + +D L E ++ L+ M D
Sbjct: 143 TTRPFFMKALSGPGLVRMVTVCAE--SLKTHLDRLEEVTNESGYVDVLT---LLRRVMLD 197
Query: 119 IVCKAICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRILH 178
+ + + S V +Q A + S L KK + L
Sbjct: 198 TSNTLFLRIPL----DESAIVVKIQGYFDAWQALLIKPDIFFKISW-LYKKYEKSVKDLK 252
Query: 179 TYFDDLTWKTIEMRK------EKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNI 232
D I ++ EK D L+ + L+RE I
Sbjct: 253 ----DAIEVLIAEKRRRISTEEKLEECMDFATELILA--------EKRGDLTRENVNQCI 300
Query: 233 FIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQ 292
M++A +T + + L +A HP++++ + KEI+ V E I D ++K+K ++
Sbjct: 301 LEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEIQTVIGER--DIKIDDIQKLKVMEN 358
Query: 293 VLSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
+ E++R P+ +++ R+ +E+ I G + ++KG + L +H + P +
Sbjct: 359 FIYESMRYQPVVDLVMRKALEDDVIDG--YPVKKGTNIILNIGRMH-RLEFFPKPNEFTL 415
Query: 353 DRFSEENSASIIPGSYSPFGDGPRICI 379
+ F++ + PFG GPR C
Sbjct: 416 ENFAKNVP----YRYFQPFGFGPRGCA 438
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 216 bits (552), Expect = 3e-66
Identities = 68/391 (17%), Positives = 140/391 (35%), Gaps = 39/391 (9%)
Query: 1 MKDVKYFG----ILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTNLFFL 56
M ++ G I +G + +P L + + + + + + +
Sbjct: 48 MSQLRDHGDVVRIKLGPKTVYAVTNPELTGALALNPDYHIAGPLWESLEGLLGKEGVATA 107
Query: 57 RNPKWKLLRNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQL--MGD 114
P + R F + + I+ + + L + W +
Sbjct: 108 NGPLHRRQRRTIQPAFRLDAIPAYGPIMEE--EAHALTE---------RWQPGKTVDATS 156
Query: 115 AMT----DIVCKAICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLA-KK 169
+ + + + + R VA+ + R + P A ++
Sbjct: 157 ESFRVAVRVAARCLLRGQYMD-ERAERLCVALATVFRGMYRRMVVPLGPLYRLPLPANRR 215
Query: 170 VHIFPRILHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLE-VYEQEQMLPAENRVLSRELF 228
+ LH D++ I R+ + DLL LLE + + +
Sbjct: 216 FNDALADLHLLVDEI----IAERRASGQKPDDLLTALLEAKDD-------NGDPIGEQEI 264
Query: 229 VSNIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMK 288
+ ++ G ET +T L LA HP+ D++R E++ VT G + ++ ++K++
Sbjct: 265 HDQVVAILTPGSETIASTIMWLLQALADHPEHADRIRDEVEAVT--GGRPVAFEDVRKLR 322
Query: 289 FLDQVLSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPE 348
V+ E +R+ P ++ R + E + G + I G + A+ DP + D
Sbjct: 323 HTGNVIVEAMRLRPAVWVLTRRAVAESELGG--YRIPAGADIIYSPYAIQRDPKSYDDNL 380
Query: 349 TYNPDRFSEENSASIIPGSYSPFGDGPRICI 379
++PDR+ E +A++ + PF G R C
Sbjct: 381 EFDPDRWLPERAANVPKYAMKPFSAGKRKCP 411
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 216 bits (551), Expect = 6e-66
Identities = 66/394 (16%), Positives = 137/394 (34%), Gaps = 33/394 (8%)
Query: 5 KY---FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTN----LFFLR 57
KY + +G ++ + DP + + + + + +
Sbjct: 44 KYGPIYREKLGNVESVYVIDPEDVALLFKSEGPNPERFLIPPWVAYHQYYQRPIGVLLKK 103
Query: 58 NPKWKLLRNKTVSVFSSAK-LKSSFDILVQDKCSDDLIDYLNENAHK---KEWPT--RQL 111
+ WK R + + K+ +L D S D + L+ K +
Sbjct: 104 SAAWKKDRVALNQEVMAPEATKNFLPLL--DAVSRDFVSVLHRRIKKAGSGNYSGDISDD 161
Query: 112 MGDAMTDIVCKAICGLEIHSIKNPSREHV-----AMQNMAFASSFRG-FARNTINFFSPY 165
+ + + I G ++ A+ M S + F
Sbjct: 162 LFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTK 221
Query: 166 LAKKVHIFPRILHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSR 225
K ++ + D T ++K D +L + + +S
Sbjct: 222 TWKDHVAAWDVIFSKADIYTQNFYWELRQKGSVHHDYRGILYRLLGDSK--------MSF 273
Query: 226 ELFVSNIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLK 285
E +N+ M+ G +T++ T L+E+A + +QD +R E+ + L+
Sbjct: 274 EDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAARHQ-AQGDMATMLQ 332
Query: 286 KMKFLDQVLSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWK 345
+ L + ETLR++P++ + R + + + ++I VQ+ AL +P +
Sbjct: 333 LVPLLKASIKETLRLHPISVTLQRYLVNDLVLRD--YMIPAKTLVQVAIYALGREPTFFF 390
Query: 346 DPETYNPDRFSEENSASIIPGSYSPFGDGPRICI 379
DPE ++P R+ ++ +I FG G R C+
Sbjct: 391 DPENFDPTRWLSKDK-NITYFRNLGFGWGVRQCL 423
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 213 bits (544), Expect = 3e-65
Identities = 85/380 (22%), Positives = 145/380 (38%), Gaps = 41/380 (10%)
Query: 7 FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTN-LFFLRNPKWKLLR 65
F + + I + K+ F + +S +LG N L + R
Sbjct: 47 FKTRLFGKNVIFISGALANRFLFTKEQETF-QATWPLSTRILLGPNALATQMGEIHRSRR 105
Query: 66 NKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVCKAIC 125
F L S + D ++ E + D+
Sbjct: 106 KILYQAFLPRTLDSYLPKM--DGIVQGYLEQW---GKANEVIWYPQLRRMTFDVAATLFM 160
Query: 126 GLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINF-FSPYL----AKKVHIFPRILHTY 180
G ++ F + +G I + + A+ + L
Sbjct: 161 GEKVSQNPQLFP--------WFETYIQGLFSLPIPLPNTLFGKSQRARAL------LLAE 206
Query: 181 FDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAGY 240
+ + I+ R+++ D L +LL + N+ LS I +++ AG+
Sbjct: 207 LEKI----IKARQQQPPSEEDALGILLAARDDN------NQPLSLPELKDQILLLLFAGH 256
Query: 241 ETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRI 300
ET T+ S L H DI+++VR+E ++ ++T ++LKKM +LDQVL E LR+
Sbjct: 257 ETLTSALSSFCLLLGQHSDIRERVRQEQNKLQL--SQELTAETLKKMPYLDQVLQEVLRL 314
Query: 301 YPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFSEENS 360
P FRE +++ G KG V H DP L+ DPE ++P+RF+ + S
Sbjct: 315 IPPVGGGFRELIQDCQFQG--FHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGS 372
Query: 361 ASII-PGSYSPFGDGPRICI 379
A+ P ++ PFG G R C+
Sbjct: 373 ATHNPPFAHVPFGGGLRECL 392
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 213 bits (545), Expect = 3e-65
Identities = 79/381 (20%), Positives = 142/381 (37%), Gaps = 34/381 (8%)
Query: 7 FGILIGTYPALLIKDPGLIMRILVKDFRYFY-DRGFHVSDSDVLGTNL-FFLRNPKWKLL 64
F + + + + + + V G + + + NP +
Sbjct: 48 FSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQ 107
Query: 65 RNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVCKAI 124
+ S + A K I+ + + + + E+ E + + + + +
Sbjct: 108 KKMLKSGLNIAHFKQHVSIIEK--ETKEYFESWGESG---EKNVFEALSELIILTASHCL 162
Query: 125 CGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLA-----KKVHIFPRILHT 179
G EI S + +A GF+ + P ++ R +
Sbjct: 163 HGKEIRS------QLNEKVAQLYADLDGGFSH--AAWLLPGWLPLPSFRRRDRAHREIKD 214
Query: 180 YFDDLTWKTIEMRKEKNIRRSDLLQLLLE-VYEQEQMLPAENRVLSRELFVSNIFIMILA 238
F I+ R++ + D+LQ LL+ Y+ + L + E+ + ++LA
Sbjct: 215 IFYKA----IQKRRQSQEKIDDILQTLLDATYKDGRPLTDD------EV-AGMLIGLLLA 263
Query: 239 GYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETL 298
G TS+TTS+ LA +Q K E K V E+ +TYD LK + LD+ + ETL
Sbjct: 264 GQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETL 323
Query: 299 RIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFSEE 358
R+ P ++ R + G + I G V + W + +NPDR+ ++
Sbjct: 324 RLRPPIMIMMRMARTPQTVAG--YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQD 381
Query: 359 NSASIIPGSYSPFGDGPRICI 379
N AS +Y PFG G CI
Sbjct: 382 NPASGEKFAYVPFGAGRHRCI 402
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 209 bits (533), Expect = 2e-63
Identities = 65/390 (16%), Positives = 131/390 (33%), Gaps = 52/390 (13%)
Query: 18 LIKDPGLIMRILVKDFRYFYDRGFHVSDSDVL-GT---NLFFLRNPKWKLLRNKTVSVFS 73
+ +P +I+ + K F +D V D+ GT + + + + +
Sbjct: 62 VSSNPKVIVLLDAKSFPILFDV-SKVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHA 120
Query: 74 SAK------LKSSFDILVQ--DKCSDDLIDYLNENAHKKEWP-TRQLMGDAMTDIVCKAI 124
K LK+S + ++ + +L + L K + A + +A
Sbjct: 121 QLKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLGRAY 180
Query: 125 CGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIF--PRILHTYFD 182
NP + SS+ F +P L + F +LHT+
Sbjct: 181 FN------SNPEETKLGTSAPTLISSWVLF------NLAPTLDLGLPWFLQEPLLHTFRL 228
Query: 183 DLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAGYET 242
K + +S ++ + + V E + +F + +
Sbjct: 229 PAFLIKSTYNKLYDYFQSVATPVMEQ--------AEKLGVPKDEAVHNILFAVCFNTFGG 280
Query: 243 STTTSSLTLHELA-HHPDIQDKVRKEIKQVTRE-SGGKITYDSLKKMKFLDQVLSETLRI 300
TL + ++ ++ +EI+ + G +T +++++M V+ E+LRI
Sbjct: 281 VKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRI 340
Query: 301 YPLANMIFRECMEEYNIPGTDH--VIEKGVFVQLPTLALHTDPALWKDPETYNPDRFSEE 358
P + + + I D ++KG + DP ++ PE Y PDRF +
Sbjct: 341 EPPVPPQYGKAKSNFTIESHDATFEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFVGD 400
Query: 359 NSASIIPGSYSPFGDGP---------RICI 379
A Y + +GP + C
Sbjct: 401 GEA---LLKYVWWSNGPETESPTVENKQCA 427
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 208 bits (532), Expect = 4e-63
Identities = 60/386 (15%), Positives = 141/386 (36%), Gaps = 25/386 (6%)
Query: 5 KY---FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGF----HVSDSDVLGTNLFFLR 57
KY F + +G++ ++ + P L+ + + + D L L
Sbjct: 60 KYGQIFRMKLGSFDSVHLGSPSLLEALYRTESAHPQRLEIKPWKAYRDHRNEAYGLMILE 119
Query: 58 NPKWKLLRNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPT--RQLMGDA 115
+W+ +R+ D + + D ++ ++E ++ +
Sbjct: 120 GQEWQRVRSAFQKKLMKPVEIMKLDKKINEVL-ADFLERMDELCDERGRIPDLYSELNKW 178
Query: 116 MTDIVCKAICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPR 175
+ +C + ++ + E A + F + + + ++
Sbjct: 179 SFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGKMMVTPVELHKRLNTKVWQA 238
Query: 176 ILHT--YFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
I+ R ++ + L ++Y+Q+ LS++ + +
Sbjct: 239 HTLAWDTIFKSVKPCIDNRLQR-YSQQPGADFLCDIYQQDH--------LSKKELYAAVT 289
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
+ LA ET+ + L+ L+ +P Q ++ +E++ V + L+ M +L
Sbjct: 290 ELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSV-LPDNQTPRAEDLRNMPYLKAC 348
Query: 294 LSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPD 353
L E++R+ P R + + + + KG + L T L + ++D + P+
Sbjct: 349 LKESMRLTPSVPFTTRTLDKPTVLGE--YALPKGTVLTLNTQVLGSSEDNFEDSHKFRPE 406
Query: 354 RFSEENSASIIPGSYSPFGDGPRICI 379
R+ ++ I P ++ PFG G R+CI
Sbjct: 407 RWLQKEK-KINPFAHLPFGIGKRMCI 431
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 204 bits (522), Expect = 1e-61
Identities = 60/403 (14%), Positives = 136/403 (33%), Gaps = 47/403 (11%)
Query: 5 KY---FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTN-LFFLRNPK 60
K+ F + I +P ++L + + + + + G + +
Sbjct: 45 KHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATSAKAFGHRSIDPMDGNT 104
Query: 61 WKLLRNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPT---RQLMGDAMT 117
+ + + + L S + ++ + + ++ N+ W T M
Sbjct: 105 TENINDTFIKTLQGHALNSLTESMM-ENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMF 163
Query: 118 DIVCKAICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFP-RI 176
+ I G ++ ++ F + + P L + I R
Sbjct: 164 EAGYLTIFGRDLTRRDTQKAH--------ILNNLDNFKQ--FDKVFPALVAGLPIHMFRT 213
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
H + L +K S+L+ L + + + + +++
Sbjct: 214 AHNAREKLAESLRHENLQKRESISELISLRMFLNDTLSTFDDLEKA-------KTHLVVL 266
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGK---------ITYDSLKKM 287
A + + +L ++ +P+ +E+K+ +G K ++ L +
Sbjct: 267 WASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDL 326
Query: 288 KFLDQVLSETLRIYPLANMIFRECMEEYNIP--GTDHVIEKGVFVQLPTLALHTDPALWK 345
LD ++ E+LR+ + + R E++ + + I K + L +H DP ++
Sbjct: 327 PVLDSIIKESLRLSSAS-LNIRTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYP 385
Query: 346 DPETYNPDRFSEEN---------SASIIPGSYSPFGDGPRICI 379
DP T+ DR+ +EN + + Y PFG G IC
Sbjct: 386 DPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGATICP 428
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 200 bits (509), Expect = 1e-59
Identities = 65/399 (16%), Positives = 130/399 (32%), Gaps = 47/399 (11%)
Query: 7 FGILIGTYPALLIKDPGLIMRILVK-----DFRYFYDRGFHVSDSDVLGTNL-FFLRNPK 60
F IL+G ++ DP ++ + DF + + L + + +
Sbjct: 55 FTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIFLMER----IFDVQLPHYSPSDE 110
Query: 61 WKLLRNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHK-KEWPTRQLMGDAMTDI 119
++ +L++ + L+ E E +
Sbjct: 111 KARMK----LTLLHRELQA-LTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRA 165
Query: 120 VCKAICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRILHT 179
+ G+E + S+ + + +FR R L+ + +
Sbjct: 166 GYLTLYGIEALPRTHESQAQDRVHSADVFHTFRQLDRLLPKLARGSLSVGDKDHMCSVKS 225
Query: 180 YFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAG 239
L R+ RS L+ L E+ + S E+ + + + A
Sbjct: 226 RLWKLLSPARLARRAH---RSKWLESYLLHLEEMGV--------SEEMQARALVLQLWAT 274
Query: 240 YETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGK------ITYDSLKKMKFLDQV 293
+ L L +P+ VR E++ + ++ + L LD V
Sbjct: 275 QGNMGPAAFWLLLFLLKNPEALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSV 334
Query: 294 LSETLRIYPLANMIFRECMEEYNIP---GTDHVIEKGVFVQL-PTLALHTDPALWKDPET 349
LSE+LR+ I RE + + +P G + + +G + L P L+ DP ++ DPE
Sbjct: 335 LSESLRLTAAP-FITREVVVDLAMPMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEV 393
Query: 350 YNPDRFSEENSAS---------IIPGSYSPFGDGPRICI 379
+ +RF + + + P+G G C+
Sbjct: 394 FKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCL 432
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 197 bits (504), Expect = 3e-59
Identities = 63/383 (16%), Positives = 125/383 (32%), Gaps = 38/383 (9%)
Query: 7 FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTNLFFLRNPKWKLLRN 66
+ +L+ + + + G + F +
Sbjct: 41 GTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPIFGEGVVF-DASPERRKE- 98
Query: 67 KTVSV-FSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVCKAIC 125
+ ++K + +I E E + +
Sbjct: 99 MLHNAALRGEQMKGHAATIED--QVRRMIADWGEAG---EIDLLDFFAELTIYTSSACLI 153
Query: 126 GLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYL----AKKVHIFPRILHTYF 181
G + + + RG + + PYL ++ L
Sbjct: 154 GKKFRD------QLDGRFAKLYHELERGTDP--LAYVDPYLPIESFRRRDEARNGLVALV 205
Query: 182 DDLTWKTIEMRKE---KNIRRSDLLQLLLE-VYEQEQMLPAENRVLSRELFVSNIFIMIL 237
D+ + R + D+L +L+ E S + M+
Sbjct: 206 ADI----MNGRIANPPTDKSDRDMLDVLIAVKAETG------TPRFSADEITGMFISMMF 255
Query: 238 AGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSET 297
AG+ TS+ T+S TL EL H D V E+ ++ + G +++ +L+++ L+ VL ET
Sbjct: 256 AGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGD-GRSVSFHALRQIPQLENVLKET 314
Query: 298 LRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFSE 357
LR++P ++ R E+ + G H I +G V + P + DP + P R+ +
Sbjct: 315 LRLHPPLIILMRVAKGEFEVQG--HRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQ 372
Query: 358 ENSASII-PGSYSPFGDGPRICI 379
++ ++ PFG G C+
Sbjct: 373 PRQEDLLNRWTWIPFGAGRHRCV 395
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 184 bits (468), Expect = 4e-54
Identities = 74/390 (18%), Positives = 140/390 (35%), Gaps = 51/390 (13%)
Query: 7 FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTNLFFLR-NPKWKLLR 65
F I I ++ DP R + R + V G + + P+ +
Sbjct: 41 FTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVPVFGEGVAYAAPYPRMREQL 100
Query: 66 NKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWP--TRQLMGDAMTDIVCKA 123
N + AK ++ + ++ ++ N K E + + + C+
Sbjct: 101 NFLAEELTIAKFQNFVPAIQ-----HEVRKFMAANWDKDEGEINLLEDCSTMIINTACQC 155
Query: 124 ICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLA-------KKVHIFPRI 176
+ G ++ + R + M F P L + H
Sbjct: 156 LFGEDLRKRLDARRFAQLLAKME-----SSLIP--AAVFLPILLKLPLPQSARCHEARTE 208
Query: 177 LHTYFDDLTWKTIEMRKE----KNIRRSDLLQLLLE-VYEQEQMLPAENRVLSRELFVSN 231
L ++ I RKE K+ SDLL LL VY + +S
Sbjct: 209 LQKILSEI----IIARKEEEVNKDSSTSDLLSGLLSAVYR-------DGTPMSLHEVCGM 257
Query: 232 IFIMILAGYETSTTTSSLTLHELAHHPDI--QDKVRKEIKQVTRESGGKITYDSLKKMKF 289
I + AG TS+ T++ ++ L H ++ + +RKEI++ + + + +M F
Sbjct: 258 IVAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEFPAQLN---YNNVMDEMPF 314
Query: 290 LDQVLSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPET 349
++ E++R P M+ R+ M + + +V+ KG + L H D + +P
Sbjct: 315 AERCARESIRRDPPLLMLMRKVMADVKVGS--YVVPKGDIIACSPLLSHHDEEAFPEPRR 372
Query: 350 YNPDRFSEENSASIIPGSYSPFGDGPRICI 379
++P+R + G++ FG G CI
Sbjct: 373 WDPERDEKV------EGAFIGFGAGVHKCI 396
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 177 bits (452), Expect = 2e-52
Identities = 61/375 (16%), Positives = 112/375 (29%), Gaps = 81/375 (21%)
Query: 11 IGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTNLFFLRNPKWKLLRNKTVS 70
+ +P LI DP + L+ + + + S + G L WK R K +
Sbjct: 38 LPRFPLALIFDPEGVEGALLAE-GTTKATFQYRALSRLTGRGLLTDWGESWKEAR-KALK 95
Query: 71 -VFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQL-MGDAMT----DIVCKAI 124
F ++ + + + + EW + + M ++ +A
Sbjct: 96 DPFLPKNVRGYREAMEE--EARAFFG---------EWRGEERDLDHEMLALSLRLLGRA- 143
Query: 125 CGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRILHTYFDDL 184
F + + +L
Sbjct: 144 ---------------------LFGKPLSPSLAEHALKALDRIMAQTRSPLALLDL----- 177
Query: 185 TWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAGYETST 244
RK++ + L++ L RE +S +++AG+ET
Sbjct: 178 -AAEARFRKDRGALYREAEALIVH---------PPLSHLPRERALSEAVTLLVAGHETVA 227
Query: 245 TTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRIYPLA 304
+ + + L+H PD Q +V + + E LR+YP A
Sbjct: 228 SALTWSFLLLSHRPDWQKRVAESEEAAL-------------------AAFQEALRLYPPA 268
Query: 305 NMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFSEENSASII 364
++ R + + G + L + D E + P+RF EE
Sbjct: 269 WILTRRLERPLLLGE--DRLPPGTTLVLSPYVTQRLH--FPDGEAFRPERFLEERGTP-- 322
Query: 365 PGSYSPFGDGPRICI 379
G Y PFG G R+C+
Sbjct: 323 SGRYFPFGLGQRLCL 337
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 166 bits (421), Expect = 1e-47
Identities = 43/381 (11%), Positives = 95/381 (24%), Gaps = 61/381 (16%)
Query: 7 FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTN-LFFLRNPKWKLLR 65
F + + + D + + G N + + +
Sbjct: 37 FQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQGMDGSAHIHRK 96
Query: 66 NKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVCKAIC 125
+S+ + K +++ + + E + + + + C
Sbjct: 97 MLFLSLMTPPHQKRLAELMTE--EWKAAVTRW---EKADEVVLFEEAKEILCRVACYWAG 151
Query: 126 GLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRILHTYFDDLT 185
V + F F + ++ + + +
Sbjct: 152 VPL-------KETEVKERADDFIDMVDAFG---AVGPRHWKGRRAR---PRAEEWIEVM- 197
Query: 186 WKTIEMRKEKNIR--RSDLLQLLLEV-YEQEQMLPAENRVLSRELFVSNIFIMILAGYET 242
IE + ++ L + E L + + I +L
Sbjct: 198 ---IEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSR--------MAAIELINVLRPIVA 246
Query: 243 STTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRIYP 302
+ + L HP ++ +R + + + E R YP
Sbjct: 247 ISYFLVFSALALHEHPKYKEWLRSG------------------NSREREMFVQEVRRYYP 288
Query: 303 LANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFSEENSAS 362
+ +++ +KG V L + DP LW P+ + P+RF+E
Sbjct: 289 FGPFLGALVKKDFVWNN--CEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAEREEN- 345
Query: 363 IIPGSYSPFGDGP----RICI 379
P G G C
Sbjct: 346 --LFDMIPQGGGHAEKGHRCP 364
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 154 bits (392), Expect = 6e-43
Identities = 59/395 (14%), Positives = 125/395 (31%), Gaps = 51/395 (12%)
Query: 5 KY---FGILIGTYPALLIKDPGLIMRILVK-DFRYFYDRGFHVSDSDVLGTNLFFLRNPK 60
K+ F + ++ D +L + + L NP+
Sbjct: 50 KHGDIFTVRAAGLYITVLLDSNCYDAVLSDVASLDQTSYAQVLM-KRIFNMILPSH-NPE 107
Query: 61 WKLLRNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIV 120
+ R + F A L + + L+ EW L + ++
Sbjct: 108 SEKKRAE--MHFQGASLTQLSNSMQN--NLRLLMTPSEMGLKTSEWKKDGLF-NLCYSLL 162
Query: 121 CKAICGLEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRI--LH 178
K + +N + + F + P LA+ + +
Sbjct: 163 FKTGYL-TVFGAENNNSAA-------LTQIYEEF--RRFDKLLPKLAR-TTVNKEEKQIA 211
Query: 179 TYFDDLTWKTI-EMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMIL 237
+ + WK + ++ R L ++ + E + E+ + + +
Sbjct: 212 SAAREKLWKWLTPSGLDRKPREQSWLGSYVKQLQDEG--------IDAEMQRRAMLLQLW 263
Query: 238 AGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSET 297
+ + + L HP+ VR+EI + + K D VL ET
Sbjct: 264 VTQGNAGPAAFWVMGYLLTHPEALRAVREEI----QGGKHLRLEERQKNTPVFDSVLWET 319
Query: 298 LRIYPLANMIFRECMEEYNIP---GTDHVIEKGVFVQL-PTLALHTDPALWKDPETYNPD 353
LR+ A +I R+ ++ I G ++ + +G + + P ++ DP + + PE + D
Sbjct: 320 LRLTAAA-LITRDVTQDKKICLSNGQEYHLRRGDRLCVFPFISPQMDPQIHQQPEMFQFD 378
Query: 354 RFSEEN---------SASIIPGSYSPFGDGPRICI 379
RF + + + + P+G +C
Sbjct: 379 RFLNADRTEKKDFFKNGARVKYPSVPWGTEDNLCP 413
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 139 bits (351), Expect = 2e-37
Identities = 41/378 (10%), Positives = 100/378 (26%), Gaps = 64/378 (16%)
Query: 11 IGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTN-LFFLRNPKWKLLRNKTV 69
+K +LG + L + + +
Sbjct: 40 FLLKKTNCLKGAKAAEIFYDTTRFEREGAMPVAIQKTLLGQGGVQGLDGETHRHRKQMFM 99
Query: 70 SVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQ--LMGDAMTDIVCKAICGL 127
+ + ++++ + + W + + D + + + +A+C
Sbjct: 100 GLMTPERVRALAQLF------EAEWR-----RAVPGWTRKGEIVFYDELHEPLTRAVCAW 148
Query: 128 EIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRILHTYFDDLTWK 187
+ + + A + + F + LA+ R + + +
Sbjct: 149 AGVPLPDDEAGNRAGE---LRALFDAAGSASPRHLWSRLAR------RRVDAWAKRI--- 196
Query: 188 TIEMRKEKNI--RRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAGYETSTT 245
IE + +I + + + L + + +L
Sbjct: 197 -IEGIRAGSIGSGSGTAAYAIAWHRD-------RHDDLLSPHVAAVELVNVLRPTVAIAV 248
Query: 246 TSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRIYPLAN 305
+ H L I+ + ++ + + + E R YP
Sbjct: 249 YITFVAHALQTCSGIRAALVQQ-------------------PDYAELFVQEVRRFYPFFP 289
Query: 306 MIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFSEENSASIIP 365
+ +++ G +G V L + D A W DP+ + P+RF +
Sbjct: 290 AVVARASQDFEWEG--MAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFRAWDED---S 344
Query: 366 GSYSPFGDGP----RICI 379
++ P G G C
Sbjct: 345 FNFIPQGGGDHYLGHRCP 362
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 113 bits (284), Expect = 8e-28
Identities = 73/406 (17%), Positives = 149/406 (36%), Gaps = 63/406 (15%)
Query: 5 KY---FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVL--GTNLFFLR-N 58
K + + +G +++ I +++ + F R S V ++ +
Sbjct: 55 KLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQDISLGDYS 114
Query: 59 PKWKLLRNKTVSVFSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTD 118
WK + T S +SS + V + + + A +
Sbjct: 115 LLWKAHKKLTRSALLLGT-RSSMEPWVDQLT-QEFCERMRVQAGAPVTIQK-EFSLLTCS 171
Query: 119 IVCKAICGLEIHSIKNPSR---EHVAMQNM--AFASSFRGFARNTINFFSPYLAKKVHIF 173
I+C G ++ A + ++ ++ ++ P+L F
Sbjct: 172 IICYLTFG---------NKEDTLVHAFHDCVQDLMKTWDHWSIQILDMV-PFL----RFF 217
Query: 174 P-------RILHTYFDDLTWKTIEMRKEK----NIRRSDLLQLLLEVYEQEQMLPAENRV 222
P + D + K + KE R D+ +L+ ++++
Sbjct: 218 PNPGLWRLKQAIENRDHMVEKQLRRHKESMVAGQWR--DMTDYMLQGVGRQRVEEGPG-Q 274
Query: 223 LSRELFVSNIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQV--TRESGGKIT 280
L ++ + + G ET+ +T S + L HHP+IQ ++++E+ + S ++T
Sbjct: 275 LLEGHVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVT 334
Query: 281 YDSLKKMKFLDQVLSETLRIYPLANM-IFRECME-----EYNIPGTDHVIEKGVFVQLPT 334
Y ++ L+ ++E LR+ P+ + + Y+IP +G+ V +P
Sbjct: 335 YKDRARLPLLNATIAEVLRLRPVVPLALPHRTTRPSSIFGYDIP-------EGMVV-IPN 386
Query: 335 L-ALHTDPALWKDPETYNPDRFSEENSASIIPGSYSPFGDGPRICI 379
L H D +W+ P + PDRF E + S FG G R+C+
Sbjct: 387 LQGAHLDETVWEQPHEFRPDRFLEPGAN----PSALAFGCGARVCL 428
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 112 bits (283), Expect = 1e-27
Identities = 85/396 (21%), Positives = 151/396 (38%), Gaps = 46/396 (11%)
Query: 7 FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRG-FHVSDSDVLGTNLFFLRN-PKWKLL 64
F + +G +++ ++ LV F DR + L R W
Sbjct: 51 FSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKMGGLLNSRYGRGWVDH 110
Query: 65 RNKTVSV---FSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVC 121
R V+ F + SF+ + ++ D + + + L+ +A+++I
Sbjct: 111 RRLAVNSFRYFGYGQ--KSFESKILEET-KFFNDAIETYKGRPFDFKQ-LITNAVSNITN 166
Query: 122 KAICGL-------EIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFP 174
I G + + E N+ A+S F N + K
Sbjct: 167 LIIFGERFTYEDTDFQHMIELFSE-----NVELAASASVFLYNAFPWIGILPFGKHQQLF 221
Query: 175 RILHTYFDDLTWKTIEMRKE----KNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVS 230
R D + IE + + + L+ E +Q + S+E +
Sbjct: 222 RNA-AVVYDFLSRLIEKASVNRKPQLPQ--HFVDAYLD--EMDQGKNDPSSTFSKENLIF 276
Query: 231 NIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFL 290
++ +I+AG ET+T + +A +P+IQ +V+KEI + GK ++D KM +
Sbjct: 277 SVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIM-GPNGKPSWDDKCKMPYT 335
Query: 291 DQVLSETLRIYPLANM-IFRECME-----EYNIPGTDHVIEKGVFVQLPTL-ALHTDPAL 343
+ VL E LR + + IF E Y+IP KG V + L ++H D
Sbjct: 336 EAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIP-------KGTTV-ITNLYSVHFDEKY 387
Query: 344 WKDPETYNPDRFSEENSASIIPGSYSPFGDGPRICI 379
W+DPE ++P+RF + + + PF G R C+
Sbjct: 388 WRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCL 423
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 106 bits (267), Expect = 2e-25
Identities = 86/419 (20%), Positives = 154/419 (36%), Gaps = 78/419 (18%)
Query: 5 KY---FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVL--GTNLFFLRN- 58
KY + + +GT +++ L +L+K + F R + + F +
Sbjct: 41 KYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSG 100
Query: 59 PKWKLLRNKTVSVFSSAKL-KSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMT 117
W+L R ++ F+ K + ++ + L D L + + + + A+T
Sbjct: 101 AHWQLHRRLAMATFALFKDGDQKLEKIICQEI-STLCDMLATHNGQSIDISF-PVFVAVT 158
Query: 118 DIVCKAICG----------LEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLA 167
+++ I + + S + ++ P+L
Sbjct: 159 NVISLICFNTSYKNGDPELNVIQNYNE--------GIIDNLSKD-----SLVDLV-PWL- 203
Query: 168 KKVHIFP-------RILHTYFDDLTWKTIEMRKEK----NIRRSDLL-QLLLEVYEQEQM 215
IFP + +DL K +E KEK +I ++L L+ +
Sbjct: 204 ---KIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSIT--NMLDTLMQAKMNSDNG 258
Query: 216 LPAENRVLSR------ELFVSNIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIK 269
++ + +IF AG ET+T+ TL L H+P ++ K+ +EI
Sbjct: 259 NAGPDQDSELLSDNHILTTIGDIFG---AGVETTTSVVKWTLAFLLHNPQVKKKLYEEID 315
Query: 270 QVTRESGGKITYDSLKKMKFLDQVLSETLRIYPLANM-IFRECME-----EYNIPGTDHV 323
Q T ++ L+ + E LR+ P+A M I + E+ +
Sbjct: 316 QNV-GFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVD----- 369
Query: 324 IEKGVFVQLPTL-ALHTDPALWKDPETYNPDRFSEENSASII--PGSYSPFGDGPRICI 379
KG V + L ALH + W P+ + P+RF +I SY PFG GPR CI
Sbjct: 370 --KGTEV-IINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCI 425
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 106 bits (266), Expect = 2e-25
Identities = 73/419 (17%), Positives = 137/419 (32%), Gaps = 71/419 (16%)
Query: 5 KY---FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVL-GTNLFFLRN-P 59
+Y F I +G+ P +++ I + LV+ F DR S V G ++ F
Sbjct: 40 RYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVVSGGRSMAFGHYSE 99
Query: 60 KWKLLRNKTVSV---FSSAKL--KSSFDILVQDKCSDDLIDYLNENAHKKE--WPTRQLM 112
WK+ R S+ F + + + + V + +L+ L + P L
Sbjct: 100 HWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEA-RELVALLVRGSADGAFLDPRP-LT 157
Query: 113 GDAMTDIVCKAICG----------LEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFF 162
A+ +++ G E+ S + + + ++
Sbjct: 158 VVAVANVMSAVCFGCRYSHDDPEFRELLSHNE--------EFGRTVGAG-----SLVDVM 204
Query: 163 S-----PYLAKKVHIFPRILHTYFDDLTWKTIEMRKEK----NIRRSDLLQLLLEVYEQE 213
P + V L+ F + E R D++ + E
Sbjct: 205 PWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESLRPGAAPR-DMMDAFIL--SAE 261
Query: 214 QMLPAENRVLSRELFVSNIFIMIL----AGYETSTTTSSLTLHELAHHPDIQDKVRKEIK 269
+ ++ L + N+ I A +T +T L +PD+Q +V+ E+
Sbjct: 262 KKAAGDSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELD 321
Query: 270 QVTRESGGKITYDSLKKMKFLDQVLSETLRIYPLANM-IFRECME-----EYNIPGTDHV 323
QV + ++ L E +R + I Y+IP
Sbjct: 322 QVV-GRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIP----- 375
Query: 324 IEKGVFVQLPTL-ALHTDPALWKDPETYNPDRFSEENSA--SIIPGSYSPFGDGPRICI 379
K V +++ DP W +PE ++P RF +++ + F G R CI
Sbjct: 376 --KDTVV-FVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCI 431
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 105 bits (265), Expect = 3e-25
Identities = 72/386 (18%), Positives = 131/386 (33%), Gaps = 67/386 (17%)
Query: 29 LVKDFRYFYDRGF-----HVSDSDVLGTNLFFLRNPKWKLLRNKTVSV---FSSAKLKSS 80
LV DR + P W+ R +VS K S
Sbjct: 69 LVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQRRFSVSTLRNLGLGK--KS 126
Query: 81 FDILVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVCKAICG----------LEIH 130
+ V ++ L ++ + P L+ A+++++ CG L +
Sbjct: 127 LEQWVTEEA-ACLCAAFANHSGRPFRPNG-LLDKAVSNVIASLTCGRRFEYDDPRFLRLL 184
Query: 131 SIKNPSREHVAMQNMAFASSFRGFARNTINFFS-----PYLAKKVHIFPRILHTYFDDLT 185
+ + + S F +N P LA KV F + T D
Sbjct: 185 DLAQ--------EGLKEESGFLR---EVLNAVPVLLHIPALAGKVLRFQKAFLTQLD--- 230
Query: 186 WKTIEMRKEK-----NIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAGY 240
+ + + R DL + L E E+ + E + + AG
Sbjct: 231 -ELLTEHRMTWDPAQPPR--DLTEAFLA--EMEKAKGNPESSFNDENLRIVVADLFSAGM 285
Query: 241 ETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRI 300
T++TT + L + HPD+Q +V++EI V + M + V+ E R
Sbjct: 286 VTTSTTLAWGLLLMILHPDVQRRVQQEIDDVI-GQVRRPEMGDQAHMPYTTAVIHEVQRF 344
Query: 301 YPLANM-IFRECMEE-----YNIPGTDHVIEKGVFVQLPTL-ALHTDPALWKDPETYNPD 353
+ + + + + IP KG + + L ++ D A+W+ P ++P+
Sbjct: 345 GDIVPLGVTHMTSRDIEVQGFRIP-------KGTTL-ITNLSSVLKDEAVWEKPFRFHPE 396
Query: 354 RFSEENSASIIPGSYSPFGDGPRICI 379
F + + P ++ PF G R C+
Sbjct: 397 HFLDAQGHFVKPEAFLPFSAGRRACL 422
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 104 bits (262), Expect = 8e-25
Identities = 86/421 (20%), Positives = 151/421 (35%), Gaps = 78/421 (18%)
Query: 5 KY---FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTN--LFFLRN- 58
+Y I IG+ P L++ I + LV+ F R + + + F +
Sbjct: 47 RYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLITDGQSLTFSTDSG 106
Query: 59 PKWKLLRNKTVSV---FSSAK-LKSSFDILVQDKCS---DDLIDYLNENAHKKEW--PTR 109
P W R + FS A SS +++ S LI L E P
Sbjct: 107 PVWAARRRLAQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYN 166
Query: 110 QLMGDAMTDIVCKAICG----------LEIHSIKNPSREHVAMQNMAFASSFRGFARNTI 159
+ ++ +++ G L + + + + ASS N +
Sbjct: 167 -QVVVSVANVIGAMCFGQHFPESSDEMLSLVKNTH--------EFVETASSG-----NPL 212
Query: 160 NFFSPYLAKKVHIFP-------RILHTYFDDLTWKTIEMRKEK----NIRRSDLLQLLLE 208
+FF P L P + + F KT++ + ++R D+ L +
Sbjct: 213 DFF-PIL----RYLPNPALQRFKAFNQRFLWFLQKTVQEHYQDFDKNSVR--DITGALFK 265
Query: 209 VYEQEQMLPAENRVLSRELFVSNIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEI 268
++ A ++ +E V+ + + AG++T TT S +L L P+IQ K++KE+
Sbjct: 266 --HSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKEL 323
Query: 269 KQVTRESGGKITYDSLKKMKFLDQVLSETLRIYPLANM-IFRECME-----EYNIPGTDH 322
V + ++ +L+ + ET R I + IP
Sbjct: 324 DTVI-GRERRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIP---- 378
Query: 323 VIEKGVFVQLPTL-ALHTDPALWKDPETYNPDRFSEENSASI---IPGSYSPFGDGPRIC 378
K V ++ DP LW+DP + P+RF + +I + FG G R C
Sbjct: 379 ---KKCCV-FVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRC 434
Query: 379 I 379
I
Sbjct: 435 I 435
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 102 bits (256), Expect = 4e-24
Identities = 78/381 (20%), Positives = 139/381 (36%), Gaps = 62/381 (16%)
Query: 29 LVKDFRYFYDRGFHVSDSDVLGTNLFFLRNPKWKLLRNKTVSV---FSSAKLKSSFDILV 85
L+ F RG + + F P WK +R +++ + K + +
Sbjct: 69 LLDYKDEFSGRGDLPAFHAHRDRGIIFNNGPTWKDIRRFSLTTLRNYGMGK--QGNESRI 126
Query: 86 QDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVCKAICG----------LEIHSIKNP 135
Q + L++ L + + PT L+G A +++ + L + + N
Sbjct: 127 QREA-HFLLEALRKTQGQPFDPTF-LIGCAPCNVIADILFRKHFDYNDEKFLRLMYLFN- 183
Query: 136 SREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRILHTYFD------DLTWKTI 189
+N S+ N F +L H P + + +
Sbjct: 184 -------ENFHLLSTPWLQL---YNNFPSFL----HYLPGSHRKVIKNVAEVKEYVSERV 229
Query: 190 EMRKEK----NIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAGYETSTT 245
+ + R DL LL E E+ + R+ + + + + AG ET++T
Sbjct: 230 KEHHQSLDPNCPR--DLTDCLLV--EMEKEKHSAERLYTMDGITVTVADLFFAGTETTST 285
Query: 246 TSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRIYPLAN 305
T L L +P+I++K+ +EI +V ++M ++D V+ E R L
Sbjct: 286 TLRYGLLILMKYPEIEEKLHEEIDRVI-GPSRIPAIKDRQEMPYMDAVVHEIQRFITLVP 344
Query: 306 M-IFRECMEE-----YNIPGTDHVIEKGVFVQLPTL-ALHTDPALWKDPETYNPDRFSEE 358
+ E + Y IP KG V +PTL ++ D + DPE + P+ F E
Sbjct: 345 SNLPHEATRDTIFRGYLIP-------KGTVV-VPTLDSVLYDNQEFPDPEKFKPEHFLNE 396
Query: 359 NSASIIPGSYSPFGDGPRICI 379
N + PF G R+C
Sbjct: 397 NGKFKYSDYFKPFSTGKRVCA 417
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 102 bits (256), Expect = 5e-24
Identities = 81/383 (21%), Positives = 136/383 (35%), Gaps = 65/383 (16%)
Query: 29 LVKDFRYFYDRG-FHVSDSDVLGTNLFFLRNPKWKLLRNKTVSV---FSSAKLKSSFDIL 84
L+ F RG F +++ G + F KWK +R ++ F K S +
Sbjct: 70 LIDLGEEFSGRGIFPLAERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGK--RSIEDR 127
Query: 85 VQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVCKAICGL-----------EIHSIK 133
VQ++ L++ L + PT L C IC + + ++
Sbjct: 128 VQEEA-RCLVEELRKTKASPCDPTFIL-----GCAPCNVICSIIFHKRFDYKDQQFLNLM 181
Query: 134 NPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRILHTYFD------DLTWK 187
E N+ SS N FSP + FP + +
Sbjct: 182 EKLNE-----NIKILSSPWIQ---ICNNFSPII----DYFPGTHNKLLKNVAFMKSYILE 229
Query: 188 TIEMRKEK----NIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAGYETS 243
++ +E N + D + L E+E+ + E + + AG ET+
Sbjct: 230 KVKEHQESMDMNNPQ--DFIDCFLMKMEKEKHNQ--PSEFTIESLENTAVDLFGAGTETT 285
Query: 244 TTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRIYPL 303
+TT L L HP++ KV++EI++V M + D V+ E R L
Sbjct: 286 STTLRYALLLLLKHPEVTAKVQEEIERVI-GRNRSPCMQDRSHMPYTDAVVHEVQRYIDL 344
Query: 304 ANM-IFRECMEE-----YNIPGTDHVIEKGVFVQLPTL-ALHTDPALWKDPETYNPDRFS 356
+ + Y IP KG + L +L ++ D + +PE ++P F
Sbjct: 345 LPTSLPHAVTCDIKFRNYLIP-------KGTTI-LISLTSVLHDNKEFPNPEMFDPHHFL 396
Query: 357 EENSASIIPGSYSPFGDGPRICI 379
+E + PF G RIC+
Sbjct: 397 DEGGNFKKSKYFMPFSAGKRICV 419
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 101 bits (255), Expect = 5e-24
Identities = 78/383 (20%), Positives = 129/383 (33%), Gaps = 65/383 (16%)
Query: 29 LVKDFRYFYDRG-FHVSDSDVLGTNLFFLRNPKWKLLRNKTVSV---FSSAKLKSSFDIL 84
LV F RG D G + F + K LR +++ F K +
Sbjct: 69 LVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGK--RGIEER 126
Query: 85 VQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVCKAICGL-----------EIHSIK 133
+Q++ LID L PT L + V I + E S+
Sbjct: 127 IQEEA-GFLIDALRGTGGANIDPTFFL-----SRTVSNVISSIVFGDRFDYKDKEFLSLL 180
Query: 134 NPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRILHTYFD------DLTWK 187
F S+ G FS + P F D K
Sbjct: 181 RMMLG-----IFQFTSTSTGQL---YEMFSSVM----KHLPGPQQQAFQLLQGLEDFIAK 228
Query: 188 TIEMRKEK----NIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAGYETS 243
+E + + R D + L ++ N + V + + G ET
Sbjct: 229 KVEHNQRTLDPNSPR--DFIDSFLI--RMQEEEKNPNTEFYLKNLVMTTLNLFIGGTETV 284
Query: 244 TTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRIYPL 303
+TT L HP+++ KV +EI +V + ++ KM +++ V+ E R +
Sbjct: 285 STTLRYGFLLLMKHPEVEAKVHEEIDRVI-GKNRQPKFEDRAKMPYMEAVIHEIQRFGDV 343
Query: 304 ANM-IFRECMEE-----YNIPGTDHVIEKGVFVQLPTL-ALHTDPALWKDPETYNPDRFS 356
M + R ++ + +P KG V P L ++ DP+ + +P+ +NP F
Sbjct: 344 IPMSLARRVKKDTKFRDFFLP-------KGTEV-YPMLGSVLRDPSFFSNPQDFNPQHFL 395
Query: 357 EENSASIIPGSYSPFGDGPRICI 379
E ++ PF G R C
Sbjct: 396 NEKGQFKKSDAFVPFSIGKRNCF 418
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 101 bits (253), Expect = 1e-23
Identities = 87/404 (21%), Positives = 151/404 (37%), Gaps = 63/404 (15%)
Query: 7 FGILIGTYPALLIKDPGLIMRILVKDFRYFYDRG-FHVSDSDVLGTNLFFLRNPKWKLLR 65
F + +G+ P +++ I LV F RG V D G + F +W+ LR
Sbjct: 47 FTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALR 106
Query: 66 NKTVSV---FSSAKLKSSFDILVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVCK 122
+++ F K S + +Q++ L++ L ++ T L ++I+C
Sbjct: 107 RFSLATMRDFGMGK--RSVEERIQEEA-RCLVEELRKSKGALLDNTL-LFHSITSNIICS 162
Query: 123 AICG----------LEIHSIKNPSREHVAMQNMAFASSFRGFARNTINFFSPYLAKKVHI 172
+ G L + + Q+ + SSF FS +L
Sbjct: 163 IVFGKRFDYKDPVFLRLLDLFF--------QSFSLISSFSSQ---VFELFSGFL----KH 207
Query: 173 FPRILHTYFD------DLTWKTIEMRKEK----NIRRSDLLQLLLEVYEQEQMLPAENRV 222
FP + +++E + N R D + + L E+ +
Sbjct: 208 FPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPR--DFIDVYLL--RMEKDKSDPSSE 263
Query: 223 LSRELFVSNIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYD 282
+ + + + AG ET++TT + +P + ++V+KEI+QV S D
Sbjct: 264 FHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVI-GSHRPPALD 322
Query: 283 SLKKMKFLDQVLSETLRIYPLANM-IFRECMEE-----YNIPGTDHVIEKGVFVQLPTL- 335
KM + D V+ E R+ L + ++ Y IP K V P L
Sbjct: 323 DRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIP-------KNTEV-FPVLS 374
Query: 336 ALHTDPALWKDPETYNPDRFSEENSASIIPGSYSPFGDGPRICI 379
+ DP ++ P T+NP F + N A + PF G RIC+
Sbjct: 375 SALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICL 418
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 71.5 bits (176), Expect = 7e-14
Identities = 39/205 (19%), Positives = 62/205 (30%), Gaps = 46/205 (22%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
Y IE R + DL +L R + + ++
Sbjct: 186 ADDYLWPF----IEKRMAQ--PGDDLFSRILSEPVGG-------RPWTVDEARRMCRNLL 232
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
G +T + LA HP+ Q +R+ L + E
Sbjct: 233 FGGLDTVAAMIGMVALHLARHPEDQRLLRER--------------PDL-----IPAAADE 273
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFS 356
+R YP + R + + + G I KG V LP++ + DPA ++ PE DR
Sbjct: 274 LMRRYPTVAV-SRNAVADVDADGV--TIRKGDLVYLPSVLHNLDPASFEAPEEVRFDRGL 330
Query: 357 EENS--ASIIPGSYSPFGDGPRICI 379
G G C+
Sbjct: 331 APIRHTT---------MGVGAHRCV 346
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 68.1 bits (167), Expect = 1e-12
Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 39/206 (18%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
L Y + I+ R+ SDL+ +L + LS + ++ I ++
Sbjct: 221 LSQYLMPV----IKERRVN--PGSDLISILCTSEYEGM-------ALSDKDILALILNVL 267
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
LA E + T +L ++ L ++P+ + V + SL + + ++E
Sbjct: 268 LAATEPADKTLALMIYHLLNNPEQMNDVLAD--------------RSL-----VPRAIAE 308
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFS 356
TLR P +I R+ ++ + G I+K V A + DP ++ P+ +N R
Sbjct: 309 TLRYKPPVQLIPRQLSQDTVVGGM--EIKKDTIVFCMIGAANRDPEAFEQPDVFNIHR-- 364
Query: 357 EENSASIIPGSYSP---FGDGPRICI 379
E+ + FG G C+
Sbjct: 365 EDLGIKSAFSGAARHLAFGSGIHNCV 390
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 66.6 bits (163), Expect = 3e-12
Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 44/203 (21%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
L+ Y + IE R++K +D + ++ R ++ + +++
Sbjct: 201 LYDYLIPI----IEQRRQK--PGTDAISIVANGQVNG-------RPITSDEAKRMCGLLL 247
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
+ G +T S ++ LA P+ + ++ + + E
Sbjct: 248 VGGLDTVVNFLSFSMEFLAKSPEHRQELIER--------------PER-----IPAACEE 288
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFS 356
LR + L R +Y G ++KG + LP + D P + R
Sbjct: 289 LLRRFSLVAD-GRILTSDYEFHGV--QLKKGDQILLPQMLSGLDERENACPMHVDFSRQK 345
Query: 357 EENSASIIPGSYSPFGDGPRICI 379
++ FG G +C+
Sbjct: 346 VSHTT---------FGHGSHLCL 359
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 66.2 bits (162), Expect = 3e-12
Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 35/178 (19%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
+ Y D + I R DL+ L++ ++ + I +++
Sbjct: 207 FYAYVDPI----IRARVGG--DGDDLITLMVNSEI-------NGERIAHDKAQGLISLLL 253
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
L G +T S + LA HP++ ++R + L + E
Sbjct: 254 LGGLDTVVNFLSFFMIHLARHPELVAELRSD--------------PLK-----LMRGAEE 294
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
R +P+ + R ++ G +++G + LPT D A +P + R
Sbjct: 295 MFRRFPVVSE-ARMVAKDQEYKGV--FLKRGDMILLPTALHGLDDAANPEPWKLDFSR 349
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 65.4 bits (160), Expect = 6e-12
Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 34/178 (19%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
L Y L I+ R+ DL+ L+ V E L + E+ ++ +++
Sbjct: 208 LRDYLRAL----IDERRRT--PGEDLMSGLVAVEESGDQLTED------EI-IATCNLLL 254
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
+AG+ET+ + + P + + S V+ E
Sbjct: 255 IAGHETTVNLIANAALAMLRTPGQWAALAAD--------------GSR-----ASAVIEE 295
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
T+R P ++ R ++ I H + KG + L A H DP + P+ ++PDR
Sbjct: 296 TMRYDPPVQLVSRYAGDDLTIGT--HTVPKGDTMLLLLAAAHRDPTIVGAPDRFDPDR 351
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 65.4 bits (160), Expect = 7e-12
Identities = 35/203 (17%), Positives = 69/203 (33%), Gaps = 44/203 (21%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
Y + I R+ +DL+ +L V + + + + + +++
Sbjct: 208 FFEYVAPI----IAARRGG--SGTDLITRILNVEIDG-------KPMPDDRALGLVSLLL 254
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
L G +T + L+ HP+ ++R+E L + + E
Sbjct: 255 LGGLDTVVNFLGFMMIYLSRHPETVAEMRRE--------------PLK-----LQRGVEE 295
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFS 356
R + + + R + + GT ++++G + LPT D DP T + R
Sbjct: 296 LFRRFAVVSD-ARYVVSDMEFHGT--MLKEGDLILLPTALHGLDDRHHDDPMTVDLSRRD 352
Query: 357 EENSASIIPGSYSPFGDGPRICI 379
+S F GP C
Sbjct: 353 VTHST---------FAQGPHRCA 366
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 64.2 bits (157), Expect = 1e-11
Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 46/205 (22%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
L ++ +E ++ L LL+ + ++ ++ I +
Sbjct: 186 LSARVAEM----LEDKRVN--PGDGLADSLLDAARAGE--------ITESEAIATILVFY 231
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
G+ + + A P++ R + +S +++E
Sbjct: 232 AVGHMAIGYLIASGIELFARRPEVFTAFRND--------------ESA-----RAAIINE 272
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFS 356
+R+ P R E+ I G +IE G ++ A + DP ++ DP+ ++ R
Sbjct: 273 MVRMDPPQLSFLRFPTEDVEIGG--VLIEAGSPIRFMIGAANRDPEVFDDPDVFDHTRPP 330
Query: 357 EENS--ASIIPGSYSPFGDGPRICI 379
+ + FG GP C
Sbjct: 331 AASRNLS---------FGLGPHSCA 346
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 63.8 bits (156), Expect = 2e-11
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 44/203 (21%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
YF +L I+ RK + D++ +LL+ E+++ L+ E S ++
Sbjct: 187 AMAYFKEL----IQKRKRH--PQQDMISMLLKGREKDK--------LTEEEAASTCILLA 232
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
+AG+ET+ S ++ L HP+ K+R+ L + + E
Sbjct: 233 IAGHETTVNLISNSVLCLLQHPEQLLKLREN--------------PDL-----IGTAVEE 273
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFS 356
LR M R E+ +I G I +G V L A + DP+++ +P+ ++ R
Sbjct: 274 CLRYESPTQMTARVASEDIDICG--VTIRQGEQVYLLLGAANRDPSIFTNPDVFDITRSP 331
Query: 357 EENSASIIPGSYSPFGDGPRICI 379
+ + FG G +C+
Sbjct: 332 NPHLS---------FGHGHHVCL 345
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 63.4 bits (155), Expect = 3e-11
Identities = 37/204 (18%), Positives = 73/204 (35%), Gaps = 43/204 (21%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
+ ++ + +N +D+L +LL+ L + EL V+ + +I
Sbjct: 205 GLALLHGV----LD-ERRRNPLENDVLTMLLQAEADGSRLSTK------EL-VALVGAII 252
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
AG +T+ + + L P+ + V+ E L + L E
Sbjct: 253 AAGTDTTIYLIAFAVLNLLRSPEALELVKAE--------------PGL-----MRNALDE 293
Query: 297 TLRIYPLANM-IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRF 355
LR + + R ++ G I+KG V L + D ++ P+ ++ R
Sbjct: 294 VLRFDNILRIGTVRFARQDLEYCG--ASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRD 351
Query: 356 SEENSASIIPGSYSPFGDGPRICI 379
+ + A +G GP +C
Sbjct: 352 TSASLA---------YGRGPHVCP 366
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 62.6 bits (153), Expect = 6e-11
Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 49/206 (23%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
L+TY L + + + LL L+ +E L + E+ V
Sbjct: 195 LYTYLHGL----VGRK-----QAEPEDGLLDELIARQLEEGDLDHD------EV-VMIAL 238
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
++++AG+ET+ +L L HP+ D + ++ + V
Sbjct: 239 VLLVAGHETTVNAIALGALTLIQHPEQIDVLLRD--------------PGA-----VSGV 279
Query: 294 LSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPD 353
+ E LR +++ I R E+ + G I+ G V + ++ D +++P+ ++
Sbjct: 280 VEELLRFTSVSDHIVRMAKEDIEVGGA--TIKAGDAVLVSITLMNRDAKAYENPDIFDAR 337
Query: 354 RFSEENSASIIPGSYSPFGDGPRICI 379
R + + FG G C+
Sbjct: 338 RNARHHVG---------FGHGIHQCL 354
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 62.3 bits (152), Expect = 8e-11
Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 40/181 (22%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
YF ++ R DLL LL+ + L + + V
Sbjct: 206 FTRYFRRE----VDRR-----GGDDRDDLLTLLVRARDTGSPLSVD------GI-VGTCV 249
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
++ AG+ET+T + + L H D+ D++R
Sbjct: 250 HLLTAGHETTTNFLAKAVLTLRAHRDVLDELRTT--------------PES-----TPAA 290
Query: 294 LSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPD 353
+ E +R P + R E+ + H I +G V + + DPA + DP+ +
Sbjct: 291 VEELMRYDPPVQAVTRWAYEDIRLGD--HDIPRGSRVVALLGSANRDPARFPDPDVLDVH 348
Query: 354 R 354
R
Sbjct: 349 R 349
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 61.9 bits (151), Expect = 9e-11
Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 35/178 (19%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
L + L I R+ +D++ ++ LS + + I++
Sbjct: 184 LVAHARTL----IAERRTN--PGNDIMSRVIMSKIDG-------ESLSEDDLIGFFTILL 230
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
L G + + S LA +++ ++ L + + E
Sbjct: 231 LGGIDNTARFLSSVFWRLAWDIELRRRLIAH--------------PEL-----IPNAVDE 271
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
LR Y A + R +E + ++ G L D + + P+ +R
Sbjct: 272 LLRFYGPAMV-GRLVTQEVTVGDI--TMKPGQTAMLWFPIASRDRSAFDSPDNIVIER 326
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 61.1 bits (149), Expect = 1e-10
Identities = 43/206 (20%), Positives = 73/206 (35%), Gaps = 50/206 (24%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
Y + + R RR DLL L+L+ +++ +SR VS +
Sbjct: 186 FADYVERA----LARR-----RREGGEDLLALMLDAHDRGL--------MSRNEIVSTVV 228
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
I G+ET + + L HPD D +R+ L L Q
Sbjct: 229 TFIFTGHETVASQVGNAVLSLLAHPDQLDLLRRR--------------PDL-----LAQA 269
Query: 294 LSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPD 353
+ E LR P R+ + + G + + V + A + DP + P+ ++ +
Sbjct: 270 VEECLRYDPSVQSNTRQLDVDVELRG--RRLRRDDVVVVLAGAANRDPRRYDRPDDFDIE 327
Query: 354 RFSEENSASIIPGSYSPFGDGPRICI 379
R + + FG G R C+
Sbjct: 328 RDPVPSMS---------FGAGMRYCL 344
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 61.1 bits (149), Expect = 2e-10
Identities = 46/207 (22%), Positives = 75/207 (36%), Gaps = 46/207 (22%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
L+ D L I + R + D+ LL+ + E + LS E +
Sbjct: 191 LYEVLDQL----IAAK-----RATPGDDMTSLLIAARDDE----GDGDRLSPEELRDTLL 237
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
+MI AGYET+ +H L PD VRK + V
Sbjct: 238 LMISAGYETTVNVIDQAVHTLLTRPDQLALVRKG--------------EVT-----WADV 278
Query: 294 LSETLRIY-PLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
+ ETLR + ++ R + + +P I +G + A + P +D +T++
Sbjct: 279 VEETLRHEPAVKHLPLRYAVTDIALPD-GRTIARGEPILASYAAANRHPDWHEDADTFDA 337
Query: 353 DRFSEENSASIIPGSYSPFGDGPRICI 379
R +E+ A FG G C+
Sbjct: 338 TRTVKEHLA---------FGHGVHFCL 355
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 60.7 bits (148), Expect = 2e-10
Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 32/155 (20%)
Query: 201 DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMILAGYETSTTTSSLTLHELAHHPDI 260
++ +L +NR L+ + + I ++I+ G ET+T + + +PDI
Sbjct: 158 GIINVLAGS-------SLKNRKLTMDEKIKYIMLLIIGGNETTTNLIGNMIRVIDENPDI 210
Query: 261 QDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRIY-PLANMIFRECMEEYNIPG 319
D K + ETLR Y P+ + R E+ I
Sbjct: 211 IDDALKNR----------------------SGFVEETLRYYSPIQFLPHRFAAEDSYINN 248
Query: 320 TDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
I+KG V + + + D + +P+ + R
Sbjct: 249 K--KIKKGDQVIVYLGSANRDETFFDEPDLFKIGR 281
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 60.7 bits (148), Expect = 2e-10
Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 39/181 (21%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
+ + DL +E R R DLL L+ V + + LS + S
Sbjct: 192 VVNFILDL----VERR-----RTEPGDDLLSALIRVQDDDD------GRLSADELTSIAL 236
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
+++LAG+E S + + + L HPD VR++ S L
Sbjct: 237 VLLLAGFEASVSLIGIGTYLLLTHPDQLALVRRD--------------PSA-----LPNA 277
Query: 294 LSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPD 353
+ E LR R EE I G I + V + A + DP + DP ++
Sbjct: 278 VEEILRYIAPPETTTRFAAEEVEIGGV--AIPQYSTVLVANGAANRDPKQFPDPHRFDVT 335
Query: 354 R 354
R
Sbjct: 336 R 336
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 60.4 bits (147), Expect = 3e-10
Identities = 38/203 (18%), Positives = 64/203 (31%), Gaps = 41/203 (20%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
L Y R+ DL+ L+ R L E + ++
Sbjct: 193 LTAYLKAR----CAERRAD--PGDDLISRLVLAEVDG-------RALDDEEAANFSTALL 239
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
LAG+ T+T + L HP D ++ + ++ E
Sbjct: 240 LAGHITTTVLLGNIVRTLDEHPAHWDAAAED--------------PGR-----IPAIVEE 280
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFS 356
LR P + R + + G I V V L+ + D DP+ ++P R
Sbjct: 281 VLRYRPPFPQMQRTTTKATEVAGV--PIPADVMVNTWVLSANRDSDAHDDPDRFDPSR-- 336
Query: 357 EENSASIIPGSYSPFGDGPRICI 379
+ A+ + FG G C+
Sbjct: 337 KSGGAAQL-----SFGHGVHFCL 354
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 60.3 bits (147), Expect = 3e-10
Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 43/204 (21%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
Y + +E + L+ L + + +S ELF +
Sbjct: 185 DIEYMAGI----LE-NPN---ITTGLMGELSRLRKDP-----AYSHVSDELFATIGVTFF 231
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
AG ++ + + L L P +++ + ++ L + + E
Sbjct: 232 GAGVISTGSFLTTALISLIQRPQLRNLLHEK--------------PEL-----IPAGVEE 272
Query: 297 TLRIY-PLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRF 355
LRI A+ + R + + ++ KG V + + DP + +P + DR
Sbjct: 273 LLRINLSFADGLPRLATADIQVGDV--LVRKGELVLVLLEGANFDPEHFPNPGSIELDRP 330
Query: 356 SEENSASIIPGSYSPFGDGPRICI 379
+ P S+ FG G C
Sbjct: 331 N--------PTSHLAFGRGQHFCP 346
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 58.8 bits (143), Expect = 9e-10
Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 38/206 (18%)
Query: 151 FRGFARNTINFFSPYLAKKVHIFPRI--LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLE 208
+A N F P + R Y + + +
Sbjct: 177 LLPYAGLVFNAFGPPNELRQSAIERSAPHQAYVAEQ----CQRPN----LAPGGFGACIH 228
Query: 209 VYEQEQMLPAENRVLSRELFVSNIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEI 268
+ ++ E + ++ AG +T+ + ++ LA PD ++R +
Sbjct: 229 AFSDT-------GEITPEEAPLLVRSLLSAGLDTTVNGIAAAVYCLARFPDEFARLRAD- 280
Query: 269 KQVTRESGGKITYDSLKKMKFLDQVLSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGV 328
SL E +R FR + + G I +G
Sbjct: 281 -------------PSL-----ARNAFEEAVRFESPVQTFFRTTTRDVELAGA--TIGEGE 320
Query: 329 FVQLPTLALHTDPALWKDPETYNPDR 354
V + + + DP W DP+ Y+ R
Sbjct: 321 KVLMFLGSANRDPRRWDDPDRYDITR 346
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 58.8 bits (143), Expect = 1e-09
Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 33/179 (18%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
+ YF L IE R+ + D + L+ + ++ F M+
Sbjct: 200 MMAYFTGL----IERRRTE--PADDAISHLVAAGVGA-----DGDTAGTLSILAFTFTMV 248
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
G +T T ++ L PD + + + + + E
Sbjct: 249 TGGNDTVTGMLGGSMPLLHRRPDQRRLLLDD--------------PEG-----IPDAVEE 289
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWK-DPETYNPDR 354
LR+ + R + I T I G V L + + D + D + R
Sbjct: 290 LLRLTSPVQGLARTTTRDVTIGDT--TIPAGRRVLLLYGSANRDERQYGPDAAELDVTR 346
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 58.5 bits (142), Expect = 1e-09
Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 33/178 (18%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
+ Y L E R+ DL L+E + LS S +++
Sbjct: 226 IGAYATAL----AEDRRVN--HHDDLTSSLVEA-------EVDGERLSSREIASFFILLV 272
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
+AG ET+ + + L+ +P+ +D+ + +D L + E
Sbjct: 273 VAGNETTRNAITHGVLALSRYPEQRDRWWSD-------------FDGL-----APTAVEE 314
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
+R + R ++ + GT + G V L + + D + + DP T++ R
Sbjct: 315 IVRWASPVVYMRRTLTQDIELRGTK--MAAGDKVSLWYCSANRDESKFADPWTFDLAR 370
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 58.4 bits (142), Expect = 1e-09
Identities = 46/207 (22%), Positives = 78/207 (37%), Gaps = 49/207 (23%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
+ Y L I+ + R DLL L+ + + L+ E +
Sbjct: 214 MSGYLSRL----IDSK-----RGQDGEDLLSALVRTSD------EDGSRLTSEELLGMAH 258
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
I+++AG+ET+ + ++ L HPD +R + +L LD
Sbjct: 259 ILLVAGHETTVNLIANGMYALLSHPDQLAALRAD--------------MTL-----LDGA 299
Query: 294 LSETLRIY-PLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
+ E LR P+ + +R +E ++ GT VI G V + H P + DP ++
Sbjct: 300 VEEMLRYEGPVESATYRFPVEPVDLDGT--VIPAGDTVLVVLADAHRTPERFPDPHRFDI 357
Query: 353 DRFSEENSASIIPGSYSPFGDGPRICI 379
R + + A FG G CI
Sbjct: 358 RRDTAGHLA---------FGHGIHFCI 375
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 58.4 bits (142), Expect = 1e-09
Identities = 50/207 (24%), Positives = 76/207 (36%), Gaps = 50/207 (24%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
L Y DDL I + DL + QE L L VS F
Sbjct: 197 LRAYIDDL----ITRK-----ESEPGDDLFSRQIARQRQEGTLDHA------GL-VSLAF 240
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
+++ AG+ET+ SL + L HP+ V+
Sbjct: 241 LLLTAGHETTANMISLGVVGLLSHPEQLTVVKAN--------------PGR-----TPMA 281
Query: 294 LSETLRIYPLANM-IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
+ E LR + +A+ R E+ I G I+ G V + L+ + DPA++KDP +
Sbjct: 282 VEELLRYFTIADGVTSRLATEDVEIGGV--SIKAGEGVIVSMLSANWDPAVFKDPAVLDV 339
Query: 353 DRFSEENSASIIPGSYSPFGDGPRICI 379
+R + + A FG GP C+
Sbjct: 340 ERGARHHLA---------FGFGPHQCL 357
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 58.1 bits (141), Expect = 2e-09
Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 44/204 (21%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
YF L R K+ +DL+ +L M P E ++ N+ ++I
Sbjct: 217 CAAYFQVL----WNERVNKD-PGNDLISMLAHSPATRNMTPEE--------YLGNVLLLI 263
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
+ G +T+ + + + L +PD K++ +L ++ ++ E
Sbjct: 264 VGGNDTTRNSMTGGVLALHKNPDQFAKLKAN--------------PAL-----VETMVPE 304
Query: 297 TLRIY-PLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRF 355
+R PLA+M R + + + G I KG V + + + D + PE + DR
Sbjct: 305 IIRWQTPLAHM-RRTAIADSELGG--KTIRKGDKVVMWYYSGNRDDEVIDRPEEFIIDRP 361
Query: 356 SEENSASIIPGSYSPFGDGPRICI 379
P + FG G C+
Sbjct: 362 R--------PRQHLSFGFGIHRCV 377
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 57.6 bits (140), Expect = 2e-09
Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 51/208 (24%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
+ Y DL I+ R R+ DL+ L++ +Q+ L + EL +
Sbjct: 206 AYAYMGDL----IDRR-----RKEPTDDLVSALVQARDQQDSLSEQ------EL-LDLAI 249
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
+++AGYE++TT + ++ L P+++ ++ L +
Sbjct: 250 GLLVAGYESTTTQIADFVYLLMTRPELRRQLLDR--------------PEL-----IPSA 290
Query: 294 LSETLRIYPL--ANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYN 351
+ E R PL R +E+ + G I G V T A + D A + D + +
Sbjct: 291 VEELTRWVPLGVGTAFPRYAVEDVTLRGV--TIRAGEPVLASTGAANRDQAQFPDADRID 348
Query: 352 PDRFSEENSASIIPGSYSPFGDGPRICI 379
DR ++ FG G C+
Sbjct: 349 VDRTPNQHLG---------FGHGVHHCL 367
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 57.6 bits (140), Expect = 2e-09
Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 51/208 (24%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
LH Y DL +E + R LL LL V + + LS+E V+
Sbjct: 187 LHGYLSDL----LERK-----RTEPDDALLSSLLAVSD------EDGDRLSQEELVAMAM 231
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
++++AG+ET+ + L HPD + + ++ SL +
Sbjct: 232 LLLIAGHETTVNLIGNGVLALLTHPDQRKLLAED--------------PSL-----ISSA 272
Query: 294 LSETLRIY--PLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYN 351
+ E LR + P++ R E+ G I G V L A + D +P+ +
Sbjct: 273 VEEFLR-FDSPVSQAPIRFTAEDVTYSGV--TIPAGEMVMLGLAAANRDADWMPEPDRLD 329
Query: 352 PDRFSEENSASIIPGSYSPFGDGPRICI 379
R + FG G C+
Sbjct: 330 ITRDASGGVF---------FGHGIHFCL 348
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 57.6 bits (140), Expect = 2e-09
Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 50/207 (24%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
L L ++ R R + DL+ L+ + + ++ L ++
Sbjct: 189 LGGLLYQL----VQER-----RANPGDDLISALITTEDPDGVVDDM------FL-MNAAG 232
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
+++A ++T+ L L PD +R++ SL +
Sbjct: 233 TLLIAAHDTTACMIGLGTALLLDSPDQLALLRED--------------PSL-----VGNA 273
Query: 294 LSETLRIYPLANM-IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
+ E LR + R + + G I KG V LA DPA ++PE ++
Sbjct: 274 VEELLRYLTIGQFGGERVATRDVELGGV--RIAKGEQVVAHVLAADFDPAFVEEPERFDI 331
Query: 353 DRFSEENSASIIPGSYSPFGDGPRICI 379
R + A FG G CI
Sbjct: 332 TRRPAPHLA---------FGFGAHQCI 349
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 57.2 bits (139), Expect = 2e-09
Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 52/209 (24%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
L Y L +E R D++ L + + + V F
Sbjct: 192 LLDYLAIL----VEQR-----LVEPKDDIISKLCTEQVKPG-------NIDKSDAVQIAF 235
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
++++AG T +L + LA HPD +++ SL Q
Sbjct: 236 LLLVAGNATMVNMIALGVATLAQHPDQLAQLKAN--------------PSL-----APQF 276
Query: 294 LSETLRIYPLANM-IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
+ E R + + + I R E+ I ++ + + + D ++++P+ +N
Sbjct: 277 VEELCRYHTASALAIKRTAKEDVMIGDK--LVRANEGIIASNQSANRDEEVFENPDEFNM 334
Query: 353 DRFSEENS--ASIIPGSYSPFGDGPRICI 379
+R FG G CI
Sbjct: 335 NRKWPPQDPLG---------FGFGDHRCI 354
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 57.2 bits (139), Expect = 3e-09
Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 50/207 (24%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
L Y D L I + L+ L+ + E EL +S
Sbjct: 196 LAGYLDGL----ITQF-----QTEPGAGLVGALVADQLANGEIDRE------EL-ISTAM 239
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
++++AG+ET+ + +SL++ L HP+ +R + SL +
Sbjct: 240 LLLIAGHETTASMTSLSVITLLDHPEQYAALRAD--------------RSL-----VPGA 280
Query: 294 LSETLRIYPLANM-IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
+ E LR +A++ R + + G +I G V + + D +++DP+ +
Sbjct: 281 VEELLRYLAIADIAGGRVATADIEVEGQ--LIRAGEGVIVVNSIANRDGTVYEDPDALDI 338
Query: 353 DRFSEENSASIIPGSYSPFGDGPRICI 379
R + + A FG G C+
Sbjct: 339 HRSARHHLA---------FGFGVHQCL 356
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 3e-09
Identities = 81/447 (18%), Positives = 139/447 (31%), Gaps = 155/447 (34%)
Query: 6 YFG---ILIGTYPAL---LIKDPGLIMRILVK---DFRYFYDRGFHVSDSDVLGTNLFFL 56
YF L TY L LIK + L++ D + +G ++L +L
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-----NILE----WL 219
Query: 57 RNPKWKLLRNKT--VSVFSSAKLKSSFDI--LVQDKCSDDLIDYLNENAHKKEWPTRQLM 112
NP + T S + S + ++Q L Y+ T +L+
Sbjct: 220 ENP------SNTPDKDYLLSIPI--SCPLIGVIQ------LAHYVV---------TAKLL 256
Query: 113 GDAMTDIVCKAICGLEIHS--IKNPSREHVAMQNMAFASSFRGFARNTINF----FSPYL 166
G + + + G HS + V +A S+ F + F ++
Sbjct: 257 GFTPGE-LRSYLKGATGHSQGL-------VTAVAIAETDSWESFFVSVRKAITVLF--FI 306
Query: 167 AKKVH-IFPRILHTYFDDLTWKTIEMRKEKN---------IRRSDLLQLLLEVYEQEQML 216
+ + +P L +E E N I Q+ V + L
Sbjct: 307 GVRCYEAYPNT------SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 217 PAENRV---L--SRELFVSNIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQV 271
PA +V L + V ++G S L+ L +RK
Sbjct: 361 PAGKQVEISLVNGAKNLV-------VSGPPQS-------LYGLNLT------LRK----A 396
Query: 272 TRESG---GKITYDSLKKMKFLDQVL-------SETLRIYPLANMIFRECMEEY------ 315
SG +I + S +K+KF ++ L S L P +++I ++ ++
Sbjct: 397 KAPSGLDQSRIPF-SERKLKFSNRFLPVASPFHSHLLV--PASDLINKDLVKNNVSFNAK 453
Query: 316 --NIP------GTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFSEENSAS-II-- 364
IP G+D + G + + P W T A+ I+
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW--ETTTQ-------FKATHILDF 504
Query: 365 -PGSYSPFGD---------GPRICIVS 381
PG S G G R+ +
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAG 531
Score = 47.4 bits (112), Expect = 7e-06
Identities = 63/391 (16%), Positives = 121/391 (30%), Gaps = 111/391 (28%)
Query: 68 TVSVFSSAKLKSSF-DILVQ---DKCSDD--------LIDYLNENAHKKEW----PTRQL 111
T S F +++L+ F IL + +DD + +L + E Q+
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 112 MGDAMTDIVCKAICGLEIHSI----KNPSREHVAMQNMAFASSFRGFARNTIN------- 160
+ +T+ + G +IH++ + + + AR
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT--ARIMAKRPFDKKS 141
Query: 161 ---FFSPYLAKKVHIFPRIL------HTYFDDL--TWKTIEMRKEKNIRRS-DLLQLLLE 208
F + I YF++L ++T + I+ S + L L+
Sbjct: 142 NSALFRAVGEGNAQLVA-IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 209 -------VYEQ----EQMLPAENRVLSRELFVSN------IFIMILAGYETSTTTSSLTL 251
V+ Q + L + ++ +S I ++ LA Y T
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV-------TA 253
Query: 252 HELAHHPDIQDKVRKEIKQVTRESGGKIT-------------YDSLKK-MKFLDQVLSET 297
L P ++R +K T S G +T + S++K + L +
Sbjct: 254 KLLGFTP---GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 298 LRIYPLANM---IFRECMEEYNIPGTDHVIEKGVFVQLPT--LALH--TDPALWKDPETY 350
YP ++ I + +E +GV P+ L++ T +
Sbjct: 311 YEAYPNTSLPPSILEDSLEN----------NEGV----PSPMLSISNLTQEQVQDYVNKT 356
Query: 351 NPDRFSEENSASIIPGSYSPFGDGPRICIVS 381
N I S +G + +VS
Sbjct: 357 N-SHLPAGKQVEI-----SLV-NGAKNLVVS 380
Score = 36.6 bits (84), Expect = 0.014
Identities = 49/281 (17%), Positives = 75/281 (26%), Gaps = 107/281 (38%)
Query: 92 DLIDYLNENAHKKEW-----PTRQLMGDAMTDIVCKAICGLEIHSIKNPSRE-HVAMQNM 145
DL Y A + W + G ++ DIV L IH + M
Sbjct: 1634 DL--YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 146 AFASSFRGFARNTINFFSPYLAKKVHIF--PR-ILHTYFDDLTWKTIEMRKEKNIRRSDL 202
F + G + F + F + +L T T
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL-----SATQFT-------------- 1732
Query: 203 LQ---LLLEVYEQEQMLPAENRVL-SRELFVSNIFIMILAGYETSTTTSSLTLH---E-- 253
Q L+E A L S+ L ++ AG H E
Sbjct: 1733 -QPALTLMEK--------AAFEDLKSKGLIPADAT---FAG------------HSLGEYA 1768
Query: 254 -LAHHPD---IQD-----KVRKEIKQ--VTRESGGKITY----------------DSLKK 286
LA D I+ R Q V R+ G+ Y ++L+
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 287 MKFLDQVLSET---LRIYPLANMIFRECMEEYNIPGTDHVI 324
+++V T + I N YN+ +V
Sbjct: 1829 --VVERVGKRTGWLVEI---VN---------YNVENQQYVA 1855
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 57.3 bits (139), Expect = 3e-09
Identities = 42/207 (20%), Positives = 72/207 (34%), Gaps = 50/207 (24%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
L L + R R DL+ L+ + + E +L +S +
Sbjct: 201 LFGLLGGL----VAER-----REEPRDDLISKLVTDHLVPGNVTTE------QL-LSTLG 244
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
I I AG ET+T+ +L+ L P++ ++RK+ L +
Sbjct: 245 ITINAGRETTTSMIALSTLLLLDRPELPAELRKD--------------PDL-----MPAA 285
Query: 294 LSETLRIYPLANM-IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
+ E LR+ +A+ R E+ + G + V + DP + DPE +
Sbjct: 286 VDELLRVLSVADSIPLRVAAEDIELSGR--TVPADDGVIALLAGANHDPEQFDDPERVDF 343
Query: 353 DRFSEENSASIIPGSYSPFGDGPRICI 379
R + A FG G C+
Sbjct: 344 HRTDNHHVA---------FGYGVHQCV 361
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 56.9 bits (138), Expect = 3e-09
Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 43/203 (21%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
+ + I R+ DL+ +L+ + L S + V +++
Sbjct: 182 YNDFTRAT----IAARRAD--PTDDLVSVLVSSEVDGERL-------SDDELVMETLLIL 228
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
+ G ET+ T S +L + D D ++++ SL L + E
Sbjct: 229 IGGDETTRHTLSGGTEQLLRNRDQWDLLQRD--------------PSL-----LPGAIEE 269
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFS 356
LR + R + G + G + L + + D A++ +PE ++ R
Sbjct: 270 MLRWTAPVKNMCRVLTADTEFHG--TALCAGEKMMLLFESANFDEAVFCEPEKFDVQRNP 327
Query: 357 EENSASIIPGSYSPFGDGPRICI 379
+ A FG G C+
Sbjct: 328 NSHLA---------FGFGTHFCL 341
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 54.9 bits (133), Expect = 1e-08
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 23/132 (17%)
Query: 223 LSRELFVSNIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYD 282
LS + I ++++AG ET+T S ++ + ++R+ +
Sbjct: 194 LSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNL-WQRIRE---------------E 237
Query: 283 SLKKMKFLDQVLSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPA 342
+L + + E LR P R+ E + IE+G +V++ + + D
Sbjct: 238 NL-----YLKAIEEALRYSPPVMRTVRKTKERVKLGDQ--TIEEGEYVRVWIASANRDEE 290
Query: 343 LWKDPETYNPDR 354
++ D E + PDR
Sbjct: 291 VFHDGEKFIPDR 302
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 55.0 bits (133), Expect = 1e-08
Identities = 34/207 (16%), Positives = 63/207 (30%), Gaps = 52/207 (25%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
Y + I R+ ++ ++ Y + + E
Sbjct: 190 FSRYLLAM----IARE-----RKEPGEGMIGAVVAEYGDD---------ATDEELRGFCV 231
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
++LAG + + L + + HP+ D R + + +
Sbjct: 232 QVMLAGDDNISGMIGLGVLAMLRHPEQIDAFRGD--------------EQS-----AQRA 272
Query: 294 LSETLRIYPLANM-IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
+ E +R + R E+ + G I+KG V A + DPAL D + +
Sbjct: 273 VDELIRYLTVPYSPTPRIAREDLTLAGQ--EIKKGDSVICSLPAANRDPALAPDVDRLDV 330
Query: 353 DRFSEENSASIIPGSYSPFGDGPRICI 379
R + A FG G C+
Sbjct: 331 TREPIPHVA---------FGHGVHHCL 348
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 55.0 bits (133), Expect = 1e-08
Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 38/178 (21%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
+ YFD+L I R+++ DL+ L + L+ + + N ++
Sbjct: 210 ILVYFDEL----ITARRKE--PGDDLVSTL-----------VTDDDLTIDDVLLNCDNVL 252
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
+ G ET+ + +H LA P + +R + +D V+ E
Sbjct: 253 IGGNETTRHAITGAVHALATVPGLLTALRDG--------------SAD-----VDTVVEE 293
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
LR A + R + I G + G V A + DPA + DP+T+ P R
Sbjct: 294 VLRWTSPAMHVLRVTTADVTINGR--DLPSGTPVVAWLPAANRDPAEFDDPDTFLPGR 349
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 55.0 bits (133), Expect = 2e-08
Identities = 24/179 (13%), Positives = 69/179 (38%), Gaps = 36/179 (20%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
+ YF+ R+ + D++ LL + + + + +
Sbjct: 219 FYDYFNGF----TVDRRSC--PKDDVMSLLANS-------KLDGNYIDDKYINAYYVAIA 265
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
AG++T++++S + L+ +P+ + + +L + +++ E
Sbjct: 266 TAGHDTTSSSSGGAIIGLSRNPEQLALAKSD--------------PAL-----IPRLVDE 306
Query: 297 TLRIY-PLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
+R P+ + R + + + G I++G + L + + D ++ +P+ ++ R
Sbjct: 307 AVRWTAPVKSF-MRTALADTEVRGQ--NIKRGDRIMLSYPSANRDEEVFSNPDEFDITR 362
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 55.0 bits (133), Expect = 2e-08
Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 34/178 (19%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
YF L R+ D+ ++ + +S I
Sbjct: 241 FERYFAGL----AAERRRN--PTDDVATVIANA-------VVDGEPMSDRDTAGYYIITA 287
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
AG++T++ +S+ LA PD+ +V+ + +L L ++ E
Sbjct: 288 SAGHDTTSASSAGAALALARDPDLFARVKAD--------------RNL-----LPGIVEE 328
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
+R R + + G I G ++ L +A + DPA + +P ++P R
Sbjct: 329 AIRWTTPVQHFMRTAATDTELCG--QKIAAGDWLMLNYVAANHDPAQFPEPRKFDPTR 384
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 54.6 bits (132), Expect = 2e-08
Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 52/207 (25%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
+ Y D+L + + R LL +++ + ++ E
Sbjct: 199 FNRYLDNL----LARQ-----RADPDDGLLGMIVRDHGDN---------VTDEELKGLCT 240
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
+IL G ET + L +P + + + ++V
Sbjct: 241 ALILGGVETVAGMIGFGVLALLDNPGQIELLFES--------------PEK-----AERV 281
Query: 294 LSETLRIYPLANM-IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
++E +R R +++ I G +I+ G +V L + D AL DP+ +
Sbjct: 282 VNELVRYLSPVQAPNPRLAIKDVVIDGQ--LIKAGDYVLCSILMANRDEALTPDPDVLDA 339
Query: 353 DRFSEENSASIIPGSYSPFGDGPRICI 379
+R + + FG G C+
Sbjct: 340 NRAAVSDVG---------FGHGIHYCV 357
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 53.8 bits (130), Expect = 3e-08
Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 50/208 (24%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
L + D + + R + DL L++ E L E+ VS +
Sbjct: 194 LASIMTDT----VAAK-----RAAPGDDLTSALIQASENGDHLTDA------EI-VSTLQ 237
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
+M+ AG+ET+ + + L+ HP+ + V ++ V
Sbjct: 238 LMVAAGHETTISLIVNAVVNLSTHPEQRALVLSG--------------EAE-----WSAV 278
Query: 294 LSETLRIY-PLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWK-DPETYN 351
+ ETLR P ++++ R E+ + VI G + + AL D + ++
Sbjct: 279 VEETLRFSTPTSHVLIRFAAEDVPVGDR--VIPAGDALIVSYGALGRDERAHGPTADRFD 336
Query: 352 PDRFSEENSASIIPGSYSPFGDGPRICI 379
R S + FG GP +C
Sbjct: 337 LTRTS--------GNRHISFGHGPHVCP 356
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 53.4 bits (129), Expect = 5e-08
Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 42/182 (23%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
+ Y IE R + DL ++ + L + +
Sbjct: 206 MFDYLVAA----IEKR-----KVEPGDDLTSDIVRAFHDGV--------LDDYELRTLVA 248
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
+++AGYET+ +L +++ A HPD K+++ L Q
Sbjct: 249 TVLVAGYETTNHQLALAMYDFAQHPDQWMKIKEN--------------PEL-----APQA 289
Query: 294 LSETLRIYPLANM-IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
+ E LR P + R E++ + G I G V + H DP ++ D + ++
Sbjct: 290 VEEVLRWSPTLPVTATRVAAEDFEVNGV--RIPTGTPVFMCAHVAHRDPRVFADADRFDI 347
Query: 353 DR 354
Sbjct: 348 TV 349
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 53.1 bits (128), Expect = 6e-08
Identities = 33/179 (18%), Positives = 66/179 (36%), Gaps = 38/179 (21%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
L Y + E + + D++ L++ + LS + F + ++
Sbjct: 220 LIGYAMKM----AEEKAKN--PADDIVTQLIQA-------DIDGEKLSDDEFGFFVVMLA 266
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
+AG ET+ + + + A HPD + +K + E
Sbjct: 267 VAGNETTRNSITQGMMAFAEHPDQWELYKKVR---------------------PETAADE 305
Query: 297 TLRIY-PLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
+R P+ R + +Y + G I+KG V + + + D +++DP T+N R
Sbjct: 306 IVRWATPVTAF-QRTALRDYELSG--VQIKKGQRVVMFYRSANFDEEVFQDPFTFNILR 361
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 51.9 bits (125), Expect = 1e-07
Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 53/208 (25%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
L+ + + + R S D+ +L + + + V
Sbjct: 198 LYGWITET----VRAR-----AGSEGGDVYSMLGAAVGRGE--------VGETEAVGLAG 240
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
+ + G T L+ L ++ ++R+
Sbjct: 241 PLQIGGEAV-THNVGQMLYLLLTRRELMARMRER--------------PGA-----RGTA 280
Query: 294 LSETLRIYPLANM--IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYN 351
L E LR + R +E+ + GT I G V + LA + DP ++ DP+ +
Sbjct: 281 LDELLRWISHRTSVGLARIALEDVEVHGT--RIAAGEPVYVSYLAANRDPDVFPDPDRID 338
Query: 352 PDRFSEENSASIIPGSYSPFGDGPRICI 379
DR + A +G+G C
Sbjct: 339 LDRDPNPHLA---------YGNGHHFCT 357
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 51.9 bits (125), Expect = 2e-07
Identities = 43/208 (20%), Positives = 75/208 (36%), Gaps = 53/208 (25%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
++ YF DL I +R S D+ LL +++ ++ V
Sbjct: 195 MNAYFSDL----IGLR-----SDSAGEDVTSLLGAAVGRDE--------ITLSEAVGLAV 237
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
++ + G T S H L P++ +++R E + +
Sbjct: 238 LLQIGGEAV-TNNSGQMFHLLLSRPELAERLRSE--------------PEI-----RPRA 277
Query: 294 LSETLRIYPLANM--IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYN 351
+ E LR P N + R +E+ I G I G V + LA + DP ++ DP+ +
Sbjct: 278 IDELLRWIPHRNAVGLSRIALEDVEIKGV--RIRAGDAVYVSYLAANRDPEVFPDPDRID 335
Query: 352 PDRFSEENSASIIPGSYSPFGDGPRICI 379
+R + + FG GP C
Sbjct: 336 FERSPNPHVS---------FGFGPHYCP 354
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 51.5 bits (124), Expect = 2e-07
Identities = 26/159 (16%), Positives = 47/159 (29%), Gaps = 32/159 (20%)
Query: 223 LSRELFVSNIFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYD 282
L+ + ++ AG ++ + + LA HPD + +
Sbjct: 226 LTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAHPDQRAAALAD--------------P 271
Query: 283 SLKKMKFLDQVLSETLRIYPLAN--MIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTD 340
+ + + + E LR + R E+ G I G V + D
Sbjct: 272 DV-----MARAVEEVLRTARAGGSVLPPRYASEDMEFGGV--TIRAGDLVLFDLGLPNFD 324
Query: 341 PALWKDPETYNPDRFSEENSASIIPGSYSPFGDGPRICI 379
+ PE ++ R + FG G CI
Sbjct: 325 ERAFTGPEEFDAARTPNPHLT---------FGHGIWHCI 354
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 50.8 bits (122), Expect = 4e-07
Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 30/148 (20%)
Query: 232 IFIMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLD 291
+ AG E + T + ++ P + +++ + +
Sbjct: 216 ALRALFAGAEMTANTVVDAVLAVSAEPGLAERIADD--------------PAA-----AQ 256
Query: 292 QVLSETLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYN 351
+ ++E LR++P ++ R E + HVI +G V + A + DP ++ +P+ +
Sbjct: 257 RTVAEVLRLHPALHLERRTATAEVRLGE--HVIGEGEEVVVVVAAANRDPEVFAEPDRLD 314
Query: 352 PDRFSEENSASIIPGSYSPFGDGPRICI 379
DR + +
Sbjct: 315 VDRPDADRAL---------SAHRGHPGR 333
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 47.2 bits (113), Expect = 5e-06
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 42/178 (23%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQEQMLPAENRVLSRELFVSNIFIMI 236
L ++ ++ RK K DL + N LS +++
Sbjct: 167 LISFSKKE----LDSRKGK--EIVDLTGKIA------------NSNLSELEKEGYFILLM 208
Query: 237 LAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSE 296
+AG ET+T + + + D VR++ +L + + E
Sbjct: 209 IAGNETTTNLIGNAIEDFTLYNS-WDYVREK--------------GAL-------KAVEE 246
Query: 297 TLRIYPLANMIFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNPDR 354
LR P R E+ I VI++G V++ + + D ++KDP+++ PDR
Sbjct: 247 ALRFSPPVMRTIRVTKEKVKIRDQ--VIDEGELVRVWIASANRDEEVFKDPDSFIPDR 302
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 47.2 bits (113), Expect = 5e-06
Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 57/207 (27%)
Query: 177 LHTYFDDLTWKTIEMRKEKNIRRS---DLLQLLLEVYEQEQMLPAENRVLSRELFVSNIF 233
+ Y L + RR ++ +++ + E +S E
Sbjct: 180 IVNYTKRL----TSGK-----RRDPGDGMIGVIVREHGAE---------ISDEELAGLAE 221
Query: 234 IMILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLKKMKFLDQV 293
++ E ++ + L HPD +R++ L +D
Sbjct: 222 GNLIMAAEQMAAQLAVAVLLLVTHPDQMALLREK--------------PEL-----IDSA 262
Query: 294 LSETLRIYPLANM-IFRECMEEYNIPGTDHVIEKGVFVQLPTLALHTDPALWKDPETYNP 352
E LR + R + + + G I G + LA + P + ++
Sbjct: 263 TEEVLRHASIVEAPAPRVALADVRMAGR--DIHAGDVLTCSMLATNRAP-----GDRFDI 315
Query: 353 DRFSEENSASIIPGSYSPFGDGPRICI 379
R + A FG G CI
Sbjct: 316 TREKATHMA---------FGHGIHHCI 333
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 8e-05
Identities = 55/393 (13%), Positives = 108/393 (27%), Gaps = 148/393 (37%)
Query: 14 YP-ALLIKDPGLIMRILVKDFRYFYDRGFHVSDSDVLGTNLFFLRNPKWKLL---RNKTV 69
Y LL+ +V ++ N F N K+L R K V
Sbjct: 243 YENCLLVLL--------------------NVQNAKAW--NAF---NLSCKILLTTRFKQV 277
Query: 70 SVFSSAKLKSSFDI------LVQDKCSDDLIDYLNENAHKKEWPTRQLMGDAMTDIVCK- 122
+ F SA + + L D+ L+ YL+ ++ P R+ V
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDLP-RE---------VLTT 325
Query: 123 -----AICGLEIHSIKNPSR----EHVAMQNMAFASSFRGFARNTINFFSPYLAKKVH-- 171
+I I + +HV + +N P +K+
Sbjct: 326 NPRRLSIIAESIR--DGLATWDNWKHV--NCDKLTTIIESS----LNVLEPAEYRKMFDR 377
Query: 172 --IFP-------RILHTYFDDLTWKTIEMRKEKNIRRSDL-------------LQLLL-- 207
+FP +L + D+ + + K + S + + L L
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 208 -------------------EVYEQEQMLP--------------------AENRVLSRELF 228
+ ++ + ++P E L R +F
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 229 VSNIFI---MILAGYETSTTTSSLTLHELAHHPDIQDKVRKEIKQVTRESGGKITYDSLK 285
+ F+ + + + S L +Q ++ + Y+ L
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSIL--------NTLQQ-LKFYKPYICDNDP---KYERLV 545
Query: 286 K--MKFLDQVLSETLRIYPLANMIFRECMEEYN 316
+ FL ++ E L +++ M E
Sbjct: 546 NAILDFLPKI-EENLICSKYTDLLRIALMAEDE 577
Score = 39.8 bits (92), Expect = 0.002
Identities = 50/402 (12%), Positives = 115/402 (28%), Gaps = 115/402 (28%)
Query: 20 KDPGLIMRILVKDFRYFYDRGFHVSDS--DVLGT----NLFFLRNPK-------WKLLR- 65
KD I+ + F +D V D +L ++ ++ W LL
Sbjct: 19 KD---ILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 66 -NKTVSVFSSAKLKSSFDIL---VQDKCSDDLIDYLN-ENAHKKEWPTRQLMGDAMTDIV 120
+ V F L+ ++ L ++ + + + + Q+ V
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---YNV 131
Query: 121 CKAICGLEIHS-IKNPSRE-HVAMQNMAFASSFRGFARNTINFFSPYLAKKVHIFPRILH 178
+ L++ + +V + + G + +A V + ++
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVL------GSGKTW-------VALDVCLSYKVQC 178
Query: 179 TYFDDLTWKTIEMRKEKNIRRSDLLQLLLEVYEQ---------EQMLPAENRVLS----- 224
+ W + ++ +L++L ++ Q + + R+ S
Sbjct: 179 KMDFKIFW--LNLKNCN--SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 225 RELFVSNIF---IMILAGYETST-------------TTSSLTLHELAHHPDIQDKVRKEI 268
R L S + +++L + + TT + + + I
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-----FLSAATTTHI 289
Query: 269 KQVTRESGGKITYDSLKKM--KFLDQVLS----ETLRIYPLA-NMIFRECMEEYNIPGTD 321
+T D +K + K+LD E L P ++I
Sbjct: 290 SLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES----------- 336
Query: 322 HVIEKGVFVQLPTLALHTDPALWKDPETYNPDRFSEENSASI 363
+ A W + + N D+ + +S+
Sbjct: 337 ---------------IRDGLATWDNWKHVNCDKLTTIIESSL 363
>2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein
ubiquitination, structural genomics, STRU genomics
consortium, SGC, ligase; 1.87A {Homo sapiens} SCOP:
d.345.1.1 PDB: 2gwf_B 2ogb_A
Length = 144
Score = 33.8 bits (77), Expect = 0.035
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 82 DILVQDKCSDDLIDYLNENAHKKEWP-------TRQLMGDAMTDIVCKAICG 126
LV+ C +++ L ENAH++ WP TRQ+ + V K I G
Sbjct: 58 RSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPG 109
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex...; cubic core, HOMO trimer,
oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus}
PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 31.1 bits (71), Expect = 0.46
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 263 KVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRIYPLANMIFRECMEE------YN 316
K+R+E+K + G K+++ M F + S L +P+ N E + +N
Sbjct: 69 KLREELKPIAFARGIKLSF-----MPFFLKAASLGLLQFPILNASVDENCQNITYKASHN 123
Query: 317 I 317
I
Sbjct: 124 I 124
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.98
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 16/37 (43%)
Query: 283 SLKKMKFLDQVLSETLRIY-----P-LANMIFRECME 313
+LKK L +L++Y P LA + ME
Sbjct: 21 ALKK-------LQASLKLYADDSAPALA---IKATME 47
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Length = 163
Score = 29.6 bits (67), Expect = 1.1
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 136 SREHVAMQNMAF------ASSF-RGFARNTINF 161
SRE A+ A A SF R F RN IN
Sbjct: 66 SRESAALALKALGIAGVIAESFGRIFYRNAINI 98
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 29.9 bits (68), Expect = 1.6
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 249 LTLHELAHHPDIQD--KVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRIYPLAN 305
+TL + A D+ RK+ K + E G K+T+ + ++ + L LR YP+ N
Sbjct: 224 VTLMDEA---DVTKLVAHRKKFKAIAAEKGIKLTF-----LPYVVKALVSALREYPVLN 274
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase;
2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB:
1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A
1dpc_A
Length = 243
Score = 29.5 bits (67), Expect = 1.7
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 16/77 (20%)
Query: 249 LTLHELAHHPDIQD--KVRKEIKQVTRESGGKITYDSLKKMKFLDQVLSETLRIYPLANM 306
+T E A DI + R K V ++G K+T + L + + L+ P N
Sbjct: 41 VTQFESA---DITELEAFRVAQKAVAEKAGVKLTV-----LPLLLKACAYLLKELPDFNS 92
Query: 307 IFRECMEE------YNI 317
+ +I
Sbjct: 93 SLAPSGQALIRKKYVHI 109
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis,
leucine biosynthesis, structural genomics, NPPSFA; 2.10A
{Methanocaldococcus jannaschii}
Length = 170
Score = 28.8 bits (65), Expect = 1.7
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 136 SREHVAMQNMAF------ASSF-RGFARNTINF 161
SRE + A SF R F RN IN
Sbjct: 66 SREQAVIAIKYCGIKAVIAKSFARIFYRNAINV 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.1 bits (65), Expect = 3.7
Identities = 28/187 (14%), Positives = 55/187 (29%), Gaps = 45/187 (24%)
Query: 157 NTINFFSPYLAKKVHIFPRILHTYFDDLTWKTIEMRKEKNIRR--SDLLQLLLEVYEQ-- 212
+ P + I+ + N+R +L ++E Y +
Sbjct: 1449 PILLVDFPSTSSLTQIYGTFNRALM----------KLLPNLRSFADNLTDAMVEFYSESQ 1498
Query: 213 EQMLPAENRVLS---RELFVSNIFIMILAGYETSTTTSSLTLHELAHHP----------D 259
++ P REL S +L +T + L L H +
Sbjct: 1499 KRFTPDIQAHYIYSPREL--SRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVE 1556
Query: 260 IQDK--VRKEIKQVTRESGGKITYDSLKK--------MKFLDQVLSETLRIYPLANMIFR 309
++K K+I +V + + D+LK+ K V LR +
Sbjct: 1557 TEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKDYQPVNRSDLR------EYVK 1610
Query: 310 ECMEEYN 316
++ +
Sbjct: 1611 ARLKVFY 1617
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 28.1 bits (63), Expect = 4.6
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 260 IQDKVRK---EIKQVTRESGGKITYDSL 284
I +K + VT +SG KI YD L
Sbjct: 74 INEKAESIDPDANTVTTQSGKKIEYDYL 101
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 28.3 bits (64), Expect = 5.1
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 17/41 (41%)
Query: 254 LAHHPDIQDKV----------------RKEIKQVTRESGGK 278
L HHP++ KV K +K VT E GGK
Sbjct: 228 LCHHPNV-AKVSFTGSVPTGKKVMEMSAKTVKHVTLELGGK 267
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 27.9 bits (63), Expect = 5.8
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 17/41 (41%)
Query: 254 LAHHPDIQDKV----------------RKEIKQVTRESGGK 278
LA HPD+ DKV + +K V+ E GGK
Sbjct: 225 LATHPDV-DKVAFTGSSATGSKIMTAAAQLVKPVSLELGGK 264
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 27.9 bits (63), Expect = 6.0
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 18/42 (42%)
Query: 254 LAHHPDIQDKV-----------------RKEIKQVTRESGGK 278
L HP I +K+ +K+VT E GGK
Sbjct: 216 LTEHPLI-EKISFTGGTSTGKKVMASASSSSLKEVTMELGGK 256
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 27.9 bits (63), Expect = 6.2
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 17/41 (41%)
Query: 254 LAHHPDIQDKVR--------KEI--------KQVTRESGGK 278
L +HPD+ KV +++ K VT E GGK
Sbjct: 223 LVNHPDV-AKVSLTGSVPTGRKVAAAAAGHLKHVTMELGGK 262
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 27.8 bits (62), Expect = 6.2
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 260 IQDKVRK---EIKQVTRESGGKITYDSL 284
I + E + +T G + YD L
Sbjct: 77 IAQSAEQIDAEAQNITLADGNTVHYDYL 104
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 27.9 bits (63), Expect = 6.3
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 18/42 (42%)
Query: 254 LAHHPDIQDKVR--------KEI---------KQVTRESGGK 278
L+ HPD+ K+ K I K+V+ E GGK
Sbjct: 252 LSDHPDV-RKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGK 292
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 27.5 bits (62), Expect = 7.8
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 18/42 (42%)
Query: 254 LAHHPDIQDKV-----------------RKEIKQVTRESGGK 278
+A H D+ DKV +K+VT E GGK
Sbjct: 232 IASHEDV-DKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGK 272
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.411
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,010,606
Number of extensions: 362540
Number of successful extensions: 1078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 925
Number of HSP's successfully gapped: 118
Length of query: 382
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 287
Effective length of database: 4,049,298
Effective search space: 1162148526
Effective search space used: 1162148526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)